Query 013873
Match_columns 434
No_of_seqs 710 out of 3028
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 08:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0268 Sof1-like rRNA process 100.0 3.6E-74 7.8E-79 465.8 29.4 416 1-434 1-433 (433)
2 KOG0271 Notchless-like WD40 re 100.0 2E-49 4.3E-54 324.3 24.4 299 58-388 107-466 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-46 1.4E-50 307.4 18.0 259 45-342 196-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-43 6.7E-48 291.6 19.8 259 60-358 169-432 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.8E-42 4E-47 283.6 20.1 296 31-342 122-479 (480)
6 KOG0286 G-protein beta subunit 100.0 1.1E-39 2.4E-44 258.2 28.1 268 59-358 48-317 (343)
7 KOG0315 G-protein beta subunit 100.0 7.3E-40 1.6E-44 253.4 25.8 275 47-356 21-300 (311)
8 KOG0279 G protein beta subunit 100.0 8E-39 1.7E-43 251.8 27.1 258 58-355 7-273 (315)
9 KOG0279 G protein beta subunit 100.0 7.5E-39 1.6E-43 251.9 25.8 249 54-344 51-313 (315)
10 KOG0263 Transcription initiati 100.0 1.9E-39 4.1E-44 289.6 22.7 252 58-349 370-654 (707)
11 KOG0318 WD40 repeat stress pro 100.0 2.4E-37 5.2E-42 263.6 29.2 302 55-383 179-583 (603)
12 KOG0282 mRNA splicing factor [ 100.0 7.5E-39 1.6E-43 270.1 18.4 274 54-342 202-503 (503)
13 KOG0291 WD40-repeat-containing 100.0 1.5E-37 3.2E-42 275.6 27.2 277 46-360 330-628 (893)
14 KOG0286 G-protein beta subunit 100.0 8.3E-37 1.8E-41 242.0 25.9 268 36-342 67-343 (343)
15 KOG0265 U5 snRNP-specific prot 100.0 2.8E-37 6E-42 245.5 23.0 277 57-390 38-325 (338)
16 KOG0295 WD40 repeat-containing 100.0 6.8E-38 1.5E-42 255.2 19.6 277 56-388 98-391 (406)
17 KOG0295 WD40 repeat-containing 100.0 3.6E-38 7.8E-43 256.8 16.9 273 32-343 116-405 (406)
18 KOG0273 Beta-transducin family 100.0 8E-37 1.7E-41 257.0 25.1 245 66-352 235-490 (524)
19 KOG0284 Polyadenylation factor 100.0 8.8E-39 1.9E-43 264.1 12.3 273 32-344 104-380 (464)
20 KOG0296 Angio-associated migra 100.0 2E-35 4.4E-40 240.9 30.0 271 56-344 54-398 (399)
21 KOG0284 Polyadenylation factor 100.0 8.4E-38 1.8E-42 258.3 14.9 268 63-387 93-364 (464)
22 KOG0285 Pleiotropic regulator 100.0 4.6E-36 9.9E-41 244.1 22.1 254 57-352 142-397 (460)
23 KOG0316 Conserved WD40 repeat- 100.0 3.3E-36 7.2E-41 231.4 19.7 277 58-393 9-290 (307)
24 KOG0645 WD40 repeat protein [G 100.0 1E-34 2.2E-39 227.7 25.5 286 57-393 5-300 (312)
25 KOG0263 Transcription initiati 100.0 2.5E-35 5.5E-40 263.4 24.3 216 48-302 433-650 (707)
26 KOG0319 WD40-repeat-containing 100.0 5.7E-35 1.2E-39 258.7 25.9 328 31-361 69-594 (775)
27 KOG0266 WD40 repeat-containing 100.0 2E-34 4.4E-39 264.1 28.5 279 59-392 151-441 (456)
28 KOG0315 G-protein beta subunit 100.0 4.5E-34 9.7E-39 221.5 23.8 239 45-322 60-308 (311)
29 cd00200 WD40 WD40 domain, foun 100.0 3.4E-33 7.3E-38 244.6 31.4 272 59-387 2-275 (289)
30 KOG0273 Beta-transducin family 100.0 4.8E-34 1.1E-38 240.3 23.9 265 38-344 249-523 (524)
31 KOG0276 Vesicle coat complex C 100.0 3E-34 6.5E-39 249.6 23.2 257 58-353 5-266 (794)
32 KOG1407 WD40 repeat protein [F 100.0 3.1E-34 6.7E-39 223.9 19.9 275 60-394 14-293 (313)
33 KOG0643 Translation initiation 100.0 5.8E-33 1.3E-37 217.5 26.1 283 61-387 5-301 (327)
34 KOG0293 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 236.5 20.8 283 57-396 215-505 (519)
35 KOG0266 WD40 repeat-containing 100.0 1.1E-33 2.3E-38 259.4 25.1 275 31-344 166-454 (456)
36 KOG0291 WD40-repeat-containing 100.0 1.1E-32 2.4E-37 244.8 29.7 278 62-356 261-562 (893)
37 KOG0281 Beta-TrCP (transducin 100.0 5.3E-35 1.2E-39 237.2 12.0 257 45-349 216-482 (499)
38 KOG0318 WD40 repeat stress pro 100.0 4.1E-32 8.9E-37 231.8 29.0 242 58-302 51-351 (603)
39 KOG0265 U5 snRNP-specific prot 100.0 6.3E-33 1.4E-37 220.8 19.3 274 32-342 55-336 (338)
40 KOG0306 WD40-repeat-containing 100.0 4.7E-32 1E-36 240.8 26.3 291 46-366 394-686 (888)
41 KOG0292 Vesicle coat complex C 100.0 6.2E-33 1.4E-37 250.4 20.7 280 61-354 4-290 (1202)
42 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.8E-36 210.4 25.4 272 31-344 21-311 (312)
43 cd00200 WD40 WD40 domain, foun 100.0 7.2E-32 1.6E-36 236.2 26.7 258 45-342 30-289 (289)
44 KOG0319 WD40-repeat-containing 100.0 2.4E-32 5.3E-37 242.2 23.3 257 61-348 360-623 (775)
45 KOG0281 Beta-TrCP (transducin 100.0 2.2E-33 4.8E-38 227.8 15.2 234 64-349 195-433 (499)
46 KOG0277 Peroxisomal targeting 100.0 1.6E-32 3.5E-37 213.5 18.2 243 65-343 59-308 (311)
47 KOG0278 Serine/threonine kinas 100.0 9.4E-33 2E-37 214.3 16.9 272 61-349 9-302 (334)
48 KOG0285 Pleiotropic regulator 100.0 7.5E-33 1.6E-37 225.5 16.9 262 43-345 170-440 (460)
49 PLN00181 protein SPA1-RELATED; 100.0 9.9E-31 2.1E-35 257.7 34.4 244 66-343 532-792 (793)
50 KOG0283 WD40 repeat-containing 100.0 1.7E-31 3.7E-36 240.9 23.9 256 58-347 258-579 (712)
51 KOG0276 Vesicle coat complex C 100.0 4.7E-32 1E-36 236.0 19.0 286 23-348 12-302 (794)
52 PLN00181 protein SPA1-RELATED; 100.0 1.6E-30 3.5E-35 256.2 31.4 284 61-389 478-779 (793)
53 KOG0293 WD40 repeat-containing 100.0 2.7E-32 6E-37 226.2 15.7 274 32-346 232-515 (519)
54 KOG0275 Conserved WD40 repeat- 100.0 1E-31 2.2E-36 216.4 18.4 285 51-389 197-495 (508)
55 KOG0288 WD40 repeat protein Ti 100.0 1.2E-31 2.6E-36 222.3 18.3 266 38-342 189-459 (459)
56 KOG0292 Vesicle coat complex C 100.0 3.4E-31 7.3E-36 239.3 21.1 285 26-349 11-326 (1202)
57 KOG0973 Histone transcription 100.0 4.8E-30 1E-34 237.6 28.0 294 63-358 10-369 (942)
58 KOG0305 Anaphase promoting com 100.0 1.9E-30 4.2E-35 228.1 24.2 257 49-346 200-463 (484)
59 KOG0313 Microtubule binding pr 100.0 7E-30 1.5E-34 209.8 24.3 265 64-344 103-418 (423)
60 PTZ00421 coronin; Provisional 100.0 3E-29 6.5E-34 228.9 31.1 256 65-352 19-298 (493)
61 PTZ00421 coronin; Provisional 100.0 2.3E-29 5.1E-34 229.6 29.7 230 61-326 70-315 (493)
62 KOG0310 Conserved WD40 repeat- 100.0 1.9E-30 4E-35 219.9 20.4 260 50-352 13-276 (487)
63 KOG0640 mRNA cleavage stimulat 100.0 9.3E-31 2E-35 209.5 17.5 278 60-389 106-412 (430)
64 PTZ00420 coronin; Provisional 100.0 3.4E-29 7.5E-34 229.4 30.2 245 46-327 54-319 (568)
65 KOG0274 Cdc4 and related F-box 100.0 7.1E-30 1.5E-34 233.2 24.2 256 48-352 230-490 (537)
66 KOG1407 WD40 repeat protein [F 100.0 2.6E-29 5.5E-34 196.5 23.4 261 42-344 38-311 (313)
67 KOG0316 Conserved WD40 repeat- 100.0 7E-30 1.5E-34 196.7 19.1 258 45-343 38-298 (307)
68 KOG0306 WD40-repeat-containing 100.0 6.6E-30 1.4E-34 227.2 21.3 264 61-385 368-646 (888)
69 KOG0264 Nucleosome remodeling 100.0 2.1E-29 4.5E-34 211.9 22.4 253 63-344 121-404 (422)
70 KOG0282 mRNA splicing factor [ 100.0 7.9E-31 1.7E-35 221.8 13.0 265 100-393 205-494 (503)
71 KOG0288 WD40 repeat protein Ti 100.0 1.6E-30 3.5E-35 215.7 14.5 279 53-389 162-447 (459)
72 KOG0277 Peroxisomal targeting 100.0 1.6E-29 3.5E-34 196.9 19.0 271 70-394 12-299 (311)
73 KOG0300 WD40 repeat-containing 100.0 2E-29 4.3E-34 202.7 19.6 289 56-386 138-457 (481)
74 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-27 3.3E-32 192.0 30.3 257 60-354 8-272 (311)
75 KOG0289 mRNA splicing factor [ 100.0 3.3E-29 7.3E-34 209.2 21.3 238 66-342 219-460 (506)
76 KOG0289 mRNA splicing factor [ 100.0 1.5E-28 3.3E-33 205.3 24.7 252 52-343 247-505 (506)
77 KOG0772 Uncharacterized conser 100.0 6.6E-30 1.4E-34 217.9 16.1 299 52-391 153-475 (641)
78 KOG0294 WD40 repeat-containing 100.0 1.1E-28 2.5E-33 198.0 22.2 242 59-346 36-283 (362)
79 KOG0278 Serine/threonine kinas 100.0 1.2E-29 2.6E-34 197.1 15.8 228 38-306 73-302 (334)
80 KOG0643 Translation initiation 100.0 1.4E-28 3.1E-33 192.9 21.7 262 48-345 34-318 (327)
81 PTZ00420 coronin; Provisional 100.0 3.1E-27 6.8E-32 216.6 32.8 233 84-347 49-296 (568)
82 KOG2096 WD40 repeat protein [G 100.0 7.6E-28 1.6E-32 193.6 24.1 251 59-344 79-402 (420)
83 KOG0641 WD40 repeat protein [G 100.0 9.4E-27 2E-31 178.6 27.4 251 65-345 31-304 (350)
84 KOG1539 WD repeat protein [Gen 100.0 3.8E-27 8.2E-32 212.1 28.8 297 43-344 179-648 (910)
85 KOG0647 mRNA export protein (c 100.0 1.7E-27 3.7E-32 190.2 23.1 250 64-353 25-290 (347)
86 KOG0274 Cdc4 and related F-box 100.0 5.9E-28 1.3E-32 220.7 23.1 265 42-355 183-452 (537)
87 KOG1274 WD40 repeat protein [G 100.0 4.4E-27 9.5E-32 214.0 27.4 250 63-345 10-263 (933)
88 KOG4283 Transcription-coupled 100.0 5.2E-27 1.1E-31 186.9 22.8 309 49-384 26-365 (397)
89 KOG0308 Conserved WD40 repeat- 100.0 1.9E-28 4E-33 214.7 15.9 262 54-346 61-329 (735)
90 KOG0299 U3 snoRNP-associated p 100.0 1E-27 2.2E-32 201.9 19.7 279 59-393 135-445 (479)
91 KOG0310 Conserved WD40 repeat- 100.0 2.2E-27 4.8E-32 201.3 21.7 256 49-346 51-311 (487)
92 KOG0299 U3 snoRNP-associated p 100.0 3.4E-27 7.4E-32 198.7 22.1 251 63-342 199-454 (479)
93 KOG1446 Histone H3 (Lys4) meth 100.0 8.3E-27 1.8E-31 187.8 23.3 275 32-346 22-305 (311)
94 KOG0646 WD40 repeat protein [G 100.0 9.9E-28 2.1E-32 202.4 17.8 219 65-353 80-316 (476)
95 KOG0647 mRNA export protein (c 100.0 6E-27 1.3E-31 187.1 20.7 258 45-333 49-312 (347)
96 KOG1332 Vesicle coat complex C 100.0 1.9E-27 4.1E-32 184.3 17.3 250 62-345 7-287 (299)
97 KOG0296 Angio-associated migra 100.0 1E-26 2.2E-31 190.4 22.2 256 32-301 72-398 (399)
98 KOG0308 Conserved WD40 repeat- 100.0 2.8E-27 6.1E-32 207.3 19.0 246 64-346 19-287 (735)
99 KOG0313 Microtubule binding pr 100.0 9.1E-27 2E-31 191.6 20.8 198 63-301 190-418 (423)
100 KOG1036 Mitotic spindle checkp 100.0 5.9E-26 1.3E-30 182.1 24.3 247 65-354 12-272 (323)
101 KOG0275 Conserved WD40 repeat- 100.0 7.9E-28 1.7E-32 194.1 12.0 274 32-342 221-507 (508)
102 KOG0640 mRNA cleavage stimulat 100.0 6.6E-27 1.4E-31 187.6 16.5 257 56-344 162-426 (430)
103 KOG0305 Anaphase promoting com 100.0 2.3E-26 4.9E-31 202.6 21.2 263 70-393 181-451 (484)
104 KOG0641 WD40 repeat protein [G 99.9 8E-25 1.7E-29 168.0 26.5 243 62-344 85-349 (350)
105 KOG0283 WD40 repeat-containing 99.9 2.2E-26 4.9E-31 208.1 20.4 209 56-303 359-578 (712)
106 KOG0264 Nucleosome remodeling 99.9 9.8E-27 2.1E-31 195.9 16.5 261 107-395 122-395 (422)
107 KOG4328 WD40 protein [Function 99.9 6E-26 1.3E-30 191.2 20.5 265 60-355 180-461 (498)
108 KOG0269 WD40 repeat-containing 99.9 2.6E-27 5.7E-32 211.5 12.7 234 68-394 89-330 (839)
109 KOG0302 Ribosome Assembly prot 99.9 1.4E-26 3E-31 190.4 15.9 258 61-393 146-428 (440)
110 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.4E-30 198.8 22.2 250 48-347 37-291 (745)
111 KOG1273 WD40 repeat protein [G 99.9 6.8E-25 1.5E-29 176.4 23.5 268 69-355 26-333 (405)
112 KOG0639 Transducin-like enhanc 99.9 1.5E-25 3.3E-30 190.9 20.9 263 64-343 417-703 (705)
113 KOG2055 WD40 repeat protein [G 99.9 6.2E-25 1.3E-29 185.3 23.8 267 66-344 213-512 (514)
114 KOG1408 WD40 repeat protein [F 99.9 9.4E-25 2E-29 193.7 25.9 287 67-354 325-681 (1080)
115 KOG0300 WD40 repeat-containing 99.9 7.8E-26 1.7E-30 182.1 17.2 263 43-346 167-478 (481)
116 KOG0772 Uncharacterized conser 99.9 1E-25 2.3E-30 192.5 18.2 221 101-347 159-397 (641)
117 KOG0294 WD40 repeat-containing 99.9 2.4E-25 5.2E-30 179.0 19.3 223 40-303 57-283 (362)
118 KOG1036 Mitotic spindle checkp 99.9 7.2E-25 1.6E-29 175.9 21.9 240 63-334 51-294 (323)
119 KOG2445 Nuclear pore complex c 99.9 4.5E-24 9.7E-29 171.2 25.0 259 63-347 10-321 (361)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.8E-24 2.1E-28 186.2 30.1 268 49-353 14-288 (300)
121 KOG1539 WD repeat protein [Gen 99.9 1.1E-23 2.3E-28 190.1 29.3 274 66-353 159-615 (910)
122 KOG0650 WD40 repeat nucleolar 99.9 6.1E-25 1.3E-29 191.0 20.6 283 54-341 388-732 (733)
123 KOG0269 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 200.8 13.7 230 41-346 105-342 (839)
124 KOG0267 Microtubule severing p 99.9 5.9E-26 1.3E-30 201.5 10.2 236 60-335 22-259 (825)
125 KOG0301 Phospholipase A2-activ 99.9 6.3E-24 1.4E-28 187.9 21.4 245 57-352 5-255 (745)
126 KOG1063 RNA polymerase II elon 99.9 1.4E-23 3E-28 185.7 21.1 308 58-387 183-678 (764)
127 KOG0321 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 181.4 21.3 262 60-346 94-393 (720)
128 KOG2919 Guanine nucleotide-bin 99.9 4.1E-23 9E-28 166.8 19.9 276 68-393 51-360 (406)
129 KOG2106 Uncharacterized conser 99.9 1E-21 2.2E-26 167.8 28.9 263 67-349 247-526 (626)
130 KOG0973 Histone transcription 99.9 1.1E-23 2.4E-28 195.7 18.3 216 58-304 121-358 (942)
131 KOG1188 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 170.5 16.7 256 80-344 41-346 (376)
132 KOG1408 WD40 repeat protein [F 99.9 3.4E-23 7.3E-28 184.0 19.7 247 64-346 457-715 (1080)
133 KOG0267 Microtubule severing p 99.9 8.2E-25 1.8E-29 194.3 9.0 230 80-354 5-236 (825)
134 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-23 2.8E-28 179.0 15.5 281 46-385 12-305 (673)
135 KOG0307 Vesicle coat complex C 99.9 5.6E-24 1.2E-28 198.6 14.3 247 66-347 64-330 (1049)
136 KOG0270 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 172.6 17.5 209 62-305 239-453 (463)
137 KOG1009 Chromatin assembly com 99.9 7.9E-22 1.7E-26 164.1 22.7 282 66-349 13-377 (434)
138 KOG1034 Transcriptional repres 99.9 1.2E-23 2.5E-28 170.3 11.5 262 44-344 113-383 (385)
139 KOG1332 Vesicle coat complex C 99.9 1.6E-22 3.4E-27 157.2 16.9 229 42-301 29-286 (299)
140 KOG0302 Ribosome Assembly prot 99.9 2.3E-22 4.9E-27 165.8 18.3 226 55-298 200-435 (440)
141 KOG0270 WD40 repeat-containing 99.9 2.5E-22 5.4E-27 169.0 18.9 243 70-349 177-454 (463)
142 KOG0268 Sof1-like rRNA process 99.9 3.7E-23 8E-28 169.5 13.0 228 38-306 81-350 (433)
143 KOG1538 Uncharacterized conser 99.9 5.3E-22 1.1E-26 175.2 20.2 259 68-348 14-297 (1081)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.5E-21 1.4E-25 168.2 27.6 250 80-389 2-264 (300)
145 KOG2048 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 169.0 26.5 251 64-348 23-279 (691)
146 KOG2106 Uncharacterized conser 99.9 1.2E-20 2.5E-25 161.5 27.5 288 48-348 136-481 (626)
147 KOG1063 RNA polymerase II elon 99.9 2.7E-22 5.8E-27 177.6 17.8 299 60-386 355-736 (764)
148 KOG1007 WD repeat protein TSSC 99.9 1.6E-21 3.5E-26 155.3 20.5 253 59-344 56-361 (370)
149 KOG0642 Cell-cycle nuclear pro 99.9 2.3E-22 5.1E-27 174.1 16.6 270 60-352 288-569 (577)
150 KOG0322 G-protein beta subunit 99.9 2.2E-22 4.7E-27 158.2 14.7 261 57-343 5-322 (323)
151 KOG1274 WD40 repeat protein [G 99.9 2.6E-21 5.5E-26 176.8 23.6 236 62-341 52-297 (933)
152 KOG4283 Transcription-coupled 99.9 5.7E-22 1.2E-26 158.3 16.8 217 106-348 40-280 (397)
153 KOG4378 Nuclear protein COP1 [ 99.9 3.9E-22 8.5E-27 170.0 16.7 231 56-326 71-305 (673)
154 KOG1445 Tumor-specific antigen 99.9 1.7E-21 3.6E-26 171.1 19.0 195 28-236 83-295 (1012)
155 KOG2048 WD40 repeat protein [G 99.9 6.6E-21 1.4E-25 168.6 21.7 270 35-345 36-320 (691)
156 KOG0307 Vesicle coat complex C 99.9 2.6E-22 5.7E-27 187.6 13.1 277 70-393 10-316 (1049)
157 KOG0646 WD40 repeat protein [G 99.9 5.9E-21 1.3E-25 161.7 19.9 232 84-347 12-250 (476)
158 KOG2096 WD40 repeat protein [G 99.9 9.3E-21 2E-25 153.1 18.4 219 91-345 63-309 (420)
159 KOG1587 Cytoplasmic dynein int 99.9 8.2E-20 1.8E-24 166.1 26.8 256 65-346 241-518 (555)
160 KOG0321 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 167.9 18.0 285 65-393 46-380 (720)
161 KOG0639 Transducin-like enhanc 99.9 1E-21 2.3E-26 167.7 11.0 228 31-300 472-703 (705)
162 KOG4328 WD40 protein [Function 99.9 5.1E-21 1.1E-25 161.7 14.9 288 26-345 188-496 (498)
163 KOG0649 WD40 repeat protein [G 99.9 2.6E-19 5.6E-24 139.4 22.3 249 68-344 12-274 (325)
164 KOG1273 WD40 repeat protein [G 99.9 4E-20 8.6E-25 149.2 18.3 232 112-356 26-292 (405)
165 KOG2055 WD40 repeat protein [G 99.9 1.9E-19 4E-24 152.5 21.7 233 109-389 213-451 (514)
166 KOG1517 Guanine nucleotide bin 99.9 1.4E-19 3E-24 167.9 22.5 287 64-390 1062-1368(1387)
167 KOG0303 Actin-binding protein 99.8 1.9E-19 4.1E-24 149.6 19.9 228 61-325 76-320 (472)
168 KOG1524 WD40 repeat-containing 99.8 4.1E-20 8.8E-25 159.4 16.3 209 80-343 76-285 (737)
169 KOG2445 Nuclear pore complex c 99.8 1.6E-19 3.5E-24 145.3 18.1 262 32-301 21-318 (361)
170 KOG0644 Uncharacterized conser 99.8 4.3E-21 9.3E-26 173.5 9.2 275 57-349 181-473 (1113)
171 KOG4227 WD40 repeat protein [G 99.8 1.3E-19 2.8E-24 150.5 16.5 296 59-387 49-371 (609)
172 KOG0303 Actin-binding protein 99.8 3.7E-19 8E-24 147.9 18.3 172 105-347 77-252 (472)
173 KOG1310 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 156.9 15.6 238 58-353 42-312 (758)
174 KOG2110 Uncharacterized conser 99.8 1.3E-17 2.9E-22 137.7 25.7 239 65-347 4-251 (391)
175 KOG1334 WD40 repeat protein [G 99.8 1.6E-19 3.6E-24 153.9 14.7 293 57-389 133-452 (559)
176 KOG0290 Conserved WD40 repeat- 99.8 2.3E-18 5E-23 137.6 20.0 224 63-340 93-361 (364)
177 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.6E-23 141.2 18.1 236 67-335 105-361 (406)
178 COG2319 FOG: WD40 repeat [Gene 99.8 5.1E-17 1.1E-21 151.0 31.2 254 61-353 60-323 (466)
179 KOG0771 Prolactin regulatory e 99.8 1.8E-18 3.9E-23 145.3 17.8 206 70-347 148-357 (398)
180 PRK01742 tolB translocation pr 99.8 4.2E-18 9.2E-23 156.2 22.0 236 88-386 183-428 (429)
181 KOG0650 WD40 repeat nucleolar 99.8 1.2E-18 2.5E-23 152.4 16.8 265 102-390 393-722 (733)
182 KOG1963 WD40 repeat protein [G 99.8 5.3E-17 1.2E-21 148.5 28.0 273 64-352 203-547 (792)
183 KOG1034 Transcriptional repres 99.8 2.9E-19 6.4E-24 145.0 11.7 232 64-348 87-341 (385)
184 KOG1007 WD repeat protein TSSC 99.8 2E-18 4.4E-23 137.8 16.0 282 81-391 28-348 (370)
185 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-19 8.3E-24 154.4 12.7 241 31-309 301-569 (577)
186 KOG1523 Actin-related protein 99.8 2.9E-17 6.2E-22 133.2 21.8 251 63-335 7-269 (361)
187 KOG1538 Uncharacterized conser 99.8 2.3E-17 5E-22 146.3 22.0 249 31-301 19-293 (1081)
188 KOG1240 Protein kinase contain 99.8 3.7E-17 8E-22 154.3 23.9 266 55-349 1037-1339(1431)
189 KOG0290 Conserved WD40 repeat- 99.8 1.8E-17 3.9E-22 132.5 17.8 204 63-297 147-361 (364)
190 KOG1272 WD40-repeat-containing 99.8 7E-19 1.5E-23 149.2 10.4 228 68-342 131-360 (545)
191 KOG2110 Uncharacterized conser 99.8 1E-15 2.3E-20 126.7 28.3 238 68-345 48-331 (391)
192 PRK11028 6-phosphogluconolacto 99.8 9.2E-16 2E-20 136.7 30.4 250 66-344 34-304 (330)
193 KOG1009 Chromatin assembly com 99.8 3.2E-17 6.9E-22 137.0 19.2 256 42-306 32-377 (434)
194 KOG2321 WD40 repeat protein [G 99.8 1.1E-16 2.5E-21 139.5 21.3 260 64-354 49-312 (703)
195 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-15 5.2E-20 139.7 31.9 265 45-347 86-362 (466)
196 KOG2111 Uncharacterized conser 99.8 1.6E-15 3.4E-20 123.2 26.0 240 68-347 7-259 (346)
197 KOG1963 WD40 repeat protein [G 99.8 8.6E-17 1.9E-21 147.1 19.7 288 41-353 32-331 (792)
198 KOG3881 Uncharacterized conser 99.8 5.2E-16 1.1E-20 129.3 21.6 252 65-351 54-327 (412)
199 KOG1445 Tumor-specific antigen 99.7 3E-17 6.5E-22 144.8 14.6 192 85-347 599-801 (1012)
200 KOG4497 Uncharacterized conser 99.7 1.2E-17 2.5E-22 136.0 11.0 262 66-394 48-382 (447)
201 KOG1517 Guanine nucleotide bin 99.7 6.1E-17 1.3E-21 150.7 16.6 281 32-347 1072-1384(1387)
202 KOG0649 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 123.0 17.0 212 110-353 11-244 (325)
203 PRK11028 6-phosphogluconolacto 99.7 1.1E-14 2.3E-19 129.8 28.1 233 82-346 5-260 (330)
204 KOG1354 Serine/threonine prote 99.7 9.2E-16 2E-20 125.8 18.4 271 66-347 25-362 (433)
205 KOG2394 WD40 protein DMR-N9 [G 99.7 3.7E-16 8.1E-21 135.3 16.7 189 180-386 192-387 (636)
206 KOG1587 Cytoplasmic dynein int 99.7 2.6E-15 5.7E-20 137.0 22.1 237 89-350 222-478 (555)
207 KOG1188 WD40 repeat protein [G 99.7 4.3E-16 9.2E-21 127.6 15.1 172 182-353 49-251 (376)
208 KOG2139 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 122.3 21.5 250 66-346 98-385 (445)
209 KOG2139 WD40 repeat protein [G 99.7 1.9E-14 4E-19 119.0 24.4 263 65-344 139-431 (445)
210 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-15 3.2E-20 131.7 18.1 222 76-350 183-458 (636)
211 PRK01742 tolB translocation pr 99.7 1.8E-15 4E-20 138.9 20.0 217 59-325 196-426 (429)
212 PF08662 eIF2A: Eukaryotic tra 99.7 6.5E-15 1.4E-19 118.8 19.5 153 168-352 10-186 (194)
213 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.2E-18 122.1 29.9 260 80-353 6-356 (369)
214 KOG2111 Uncharacterized conser 99.7 1.2E-13 2.7E-18 112.4 26.2 176 89-302 75-257 (346)
215 KOG0644 Uncharacterized conser 99.7 9.5E-17 2.1E-21 145.8 9.2 228 47-304 213-471 (1113)
216 PRK03629 tolB translocation pr 99.7 7.3E-14 1.6E-18 128.0 27.4 212 89-344 179-406 (429)
217 PRK05137 tolB translocation pr 99.7 6.5E-14 1.4E-18 129.2 26.9 215 89-347 182-415 (435)
218 PRK04922 tolB translocation pr 99.7 2.8E-14 6E-19 131.4 23.5 213 89-345 184-412 (433)
219 KOG1524 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 130.7 14.7 185 58-297 96-282 (737)
220 PRK02889 tolB translocation pr 99.7 6.8E-14 1.5E-18 128.4 25.5 205 89-336 176-392 (427)
221 KOG1523 Actin-related protein 99.7 1.3E-14 2.8E-19 118.0 18.0 211 105-347 6-239 (361)
222 KOG2314 Translation initiation 99.6 7.1E-14 1.5E-18 121.9 22.0 261 69-344 213-573 (698)
223 KOG1272 WD40-repeat-containing 99.6 3E-16 6.6E-21 133.5 7.0 203 109-353 129-332 (545)
224 KOG1310 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 125.7 17.4 189 47-238 73-307 (758)
225 KOG3881 Uncharacterized conser 99.6 4.9E-14 1.1E-18 117.7 18.9 227 65-325 104-342 (412)
226 KOG0771 Prolactin regulatory e 99.6 4.2E-14 9.2E-19 119.3 17.9 183 167-390 148-341 (398)
227 KOG4227 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 115.5 20.2 250 63-343 102-386 (609)
228 PRK03629 tolB translocation pr 99.6 3.1E-13 6.8E-18 123.9 24.0 218 62-324 194-427 (429)
229 KOG4497 Uncharacterized conser 99.6 2.6E-14 5.7E-19 116.7 13.3 277 50-351 75-398 (447)
230 PRK04922 tolB translocation pr 99.6 3E-13 6.6E-18 124.6 22.1 220 60-324 197-432 (433)
231 KOG1240 Protein kinase contain 99.6 1.9E-13 4.1E-18 129.8 20.0 232 94-355 1034-1284(1431)
232 PRK05137 tolB translocation pr 99.6 8.9E-13 1.9E-17 121.7 23.8 219 60-324 195-432 (435)
233 PF08662 eIF2A: Eukaryotic tra 99.6 3.9E-13 8.5E-18 108.5 18.6 152 114-307 10-184 (194)
234 PRK02889 tolB translocation pr 99.6 4.7E-13 1E-17 122.9 21.4 222 60-325 189-425 (427)
235 KOG0322 G-protein beta subunit 99.6 5E-14 1.1E-18 111.6 12.5 161 64-233 148-322 (323)
236 PF10282 Lactonase: Lactonase, 99.5 6.6E-11 1.4E-15 105.6 32.0 257 66-348 36-328 (345)
237 TIGR02800 propeller_TolB tol-p 99.5 9E-12 1.9E-16 115.2 24.7 211 89-343 170-396 (417)
238 PRK00178 tolB translocation pr 99.5 2.4E-11 5.2E-16 112.4 26.5 211 90-344 180-406 (430)
239 KOG2315 Predicted translation 99.5 1.4E-11 3.1E-16 108.0 23.1 260 66-345 34-391 (566)
240 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.3E-10 2.9E-15 100.9 28.9 270 50-352 31-338 (352)
241 PF02239 Cytochrom_D1: Cytochr 99.5 2.2E-11 4.8E-16 108.4 24.2 252 52-310 22-356 (369)
242 KOG1409 Uncharacterized conser 99.5 5.2E-12 1.1E-16 104.1 18.4 195 66-301 68-270 (404)
243 KOG2321 WD40 repeat protein [G 99.5 2E-12 4.3E-17 113.5 16.8 207 71-347 138-346 (703)
244 KOG1334 WD40 repeat protein [G 99.5 5.2E-13 1.1E-17 114.8 13.0 276 50-348 168-470 (559)
245 PRK04792 tolB translocation pr 99.5 3E-11 6.4E-16 111.4 25.7 216 90-350 199-430 (448)
246 PRK01029 tolB translocation pr 99.5 2.9E-11 6.3E-16 110.5 25.0 223 89-349 165-408 (428)
247 COG5170 CDC55 Serine/threonine 99.5 1.8E-12 4E-17 105.4 14.5 270 65-345 25-368 (460)
248 KOG0974 WD-repeat protein WDR6 99.5 3.1E-12 6.8E-17 119.9 17.8 194 117-346 95-290 (967)
249 PRK01029 tolB translocation pr 99.4 7.8E-11 1.7E-15 107.7 25.3 223 65-326 183-426 (428)
250 KOG1409 Uncharacterized conser 99.4 1.3E-11 2.8E-16 101.8 17.5 243 56-348 14-274 (404)
251 TIGR02800 propeller_TolB tol-p 99.4 3.4E-11 7.3E-16 111.3 22.7 199 60-302 183-398 (417)
252 PRK00178 tolB translocation pr 99.4 4.3E-11 9.3E-16 110.7 22.8 220 61-325 193-428 (430)
253 KOG1064 RAVE (regulator of V-A 99.4 1E-12 2.3E-17 129.2 11.8 201 63-355 2205-2409(2439)
254 PRK04792 tolB translocation pr 99.4 6.4E-11 1.4E-15 109.2 22.8 215 65-324 216-446 (448)
255 KOG4714 Nucleoporin [Nuclear s 99.4 1.2E-11 2.6E-16 98.1 13.1 245 58-342 27-316 (319)
256 PLN02919 haloacid dehalogenase 99.4 1.5E-09 3.3E-14 109.4 30.7 270 70-348 571-892 (1057)
257 COG2706 3-carboxymuconate cycl 99.4 9.2E-09 2E-13 86.3 29.9 266 62-344 35-321 (346)
258 PF04158 Sof1: Sof1-like domai 99.4 5.7E-12 1.2E-16 83.7 8.3 86 345-430 3-88 (88)
259 KOG4547 WD40 repeat-containing 99.3 1E-10 2.2E-15 103.5 18.0 195 119-345 3-221 (541)
260 KOG0280 Uncharacterized conser 99.3 1.2E-10 2.6E-15 94.2 16.7 227 87-346 44-286 (339)
261 KOG2041 WD40 repeat protein [G 99.3 1.3E-10 2.9E-15 105.1 18.8 248 66-330 14-324 (1189)
262 KOG0974 WD-repeat protein WDR6 99.3 3.7E-10 8E-15 106.4 22.0 146 74-235 141-289 (967)
263 COG5354 Uncharacterized protei 99.3 8.3E-10 1.8E-14 96.1 22.1 261 65-346 31-350 (561)
264 KOG4547 WD40 repeat-containing 99.3 6.8E-10 1.5E-14 98.4 21.3 186 79-302 5-221 (541)
265 KOG0280 Uncharacterized conser 99.3 1.8E-10 4E-15 93.2 15.0 201 69-347 124-336 (339)
266 KOG0882 Cyclophilin-related pe 99.3 8.6E-11 1.9E-15 100.5 13.3 267 65-356 8-317 (558)
267 KOG1912 WD40 repeat protein [G 99.3 1.5E-09 3.2E-14 99.3 21.5 295 55-350 44-557 (1062)
268 KOG4190 Uncharacterized conser 99.3 1.6E-11 3.4E-16 107.7 8.1 227 102-355 728-959 (1034)
269 PF10282 Lactonase: Lactonase, 99.3 1.9E-08 4.1E-13 89.9 28.0 227 66-322 86-345 (345)
270 KOG1912 WD40 repeat protein [G 99.2 3.5E-09 7.6E-14 96.9 20.8 259 65-345 14-305 (1062)
271 KOG1354 Serine/threonine prote 99.2 1.7E-10 3.7E-15 95.4 10.6 230 108-357 24-315 (433)
272 KOG3914 WD repeat protein WDR4 99.2 7.5E-10 1.6E-14 93.6 14.4 86 268-354 148-233 (390)
273 KOG4532 WD40-like repeat conta 99.2 1.5E-08 3.3E-13 81.3 20.5 243 70-346 71-333 (344)
274 KOG3914 WD repeat protein WDR4 99.2 2.6E-09 5.7E-14 90.4 17.1 158 68-242 64-231 (390)
275 PF08450 SGL: SMP-30/Gluconola 99.2 3E-07 6.4E-12 78.3 29.9 223 71-332 4-243 (246)
276 COG5354 Uncharacterized protei 99.2 2.6E-08 5.5E-13 87.1 22.7 254 47-347 109-398 (561)
277 KOG4190 Uncharacterized conser 99.2 1.3E-10 2.9E-15 102.0 8.8 243 59-342 728-986 (1034)
278 TIGR03300 assembly_YfgL outer 99.2 5.7E-08 1.2E-12 88.5 26.4 249 80-353 66-347 (377)
279 COG4946 Uncharacterized protei 99.1 7.8E-08 1.7E-12 83.4 24.9 140 63-217 356-502 (668)
280 KOG0309 Conserved WD40 repeat- 99.1 4.6E-10 1E-14 101.9 11.7 243 68-346 69-341 (1081)
281 PF04762 IKI3: IKI3 family; I 99.1 8.9E-08 1.9E-12 95.1 28.2 253 64-343 73-378 (928)
282 KOG2315 Predicted translation 99.1 3.9E-08 8.3E-13 87.0 21.5 212 64-324 163-410 (566)
283 PRK04043 tolB translocation pr 99.1 9.4E-08 2E-12 87.0 24.8 210 90-346 170-402 (419)
284 KOG1645 RING-finger-containing 99.1 1.6E-08 3.4E-13 85.8 18.0 267 59-345 186-462 (463)
285 KOG1832 HIV-1 Vpr-binding prot 99.1 1.5E-10 3.2E-15 107.2 5.4 218 59-332 1094-1319(1516)
286 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 85.7 24.2 194 68-305 189-404 (419)
287 PF15492 Nbas_N: Neuroblastoma 99.0 1.6E-07 3.5E-12 76.6 21.1 46 313-358 228-273 (282)
288 KOG4532 WD40-like repeat conta 99.0 8.4E-08 1.8E-12 77.1 18.8 230 86-356 49-294 (344)
289 KOG0309 Conserved WD40 repeat- 99.0 3.2E-09 7E-14 96.6 11.2 246 66-363 24-306 (1081)
290 COG2706 3-carboxymuconate cycl 99.0 1.5E-06 3.3E-11 73.3 26.1 221 70-323 92-345 (346)
291 PF04762 IKI3: IKI3 family; I 99.0 3.9E-07 8.5E-12 90.6 26.6 272 61-345 205-520 (928)
292 TIGR02658 TTQ_MADH_Hv methylam 99.0 9.4E-07 2E-11 77.3 25.7 234 89-353 27-296 (352)
293 PLN02919 haloacid dehalogenase 99.0 3E-07 6.6E-12 93.1 25.4 223 68-305 625-892 (1057)
294 TIGR03300 assembly_YfgL outer 99.0 5.3E-07 1.1E-11 82.2 24.2 244 80-341 106-376 (377)
295 PF08450 SGL: SMP-30/Gluconola 98.9 1.1E-06 2.3E-11 74.9 24.0 196 114-353 4-221 (246)
296 PF07433 DUF1513: Protein of u 98.9 1.7E-06 3.6E-11 73.0 24.0 235 68-340 6-281 (305)
297 PF13360 PQQ_2: PQQ-like domai 98.9 7.1E-07 1.5E-11 75.7 22.3 228 87-349 1-235 (238)
298 COG4946 Uncharacterized protei 98.9 4.1E-07 8.9E-12 79.1 20.0 202 118-351 275-484 (668)
299 PF00400 WD40: WD domain, G-be 98.9 2.4E-09 5.2E-14 61.7 4.6 38 57-95 2-39 (39)
300 PF00400 WD40: WD domain, G-be 98.9 6E-09 1.3E-13 60.0 6.0 39 99-137 1-39 (39)
301 KOG1920 IkappaB kinase complex 98.8 3.6E-06 7.7E-11 81.8 25.7 214 65-304 67-325 (1265)
302 KOG2695 WD40 repeat protein [G 98.8 1.3E-08 2.9E-13 84.5 8.2 147 184-354 235-386 (425)
303 KOG4714 Nucleoporin [Nuclear s 98.8 8.1E-08 1.7E-12 76.8 11.9 201 80-299 102-316 (319)
304 KOG1275 PAB-dependent poly(A) 98.8 2.1E-07 4.6E-12 87.2 16.1 177 123-342 149-340 (1118)
305 KOG2041 WD40 repeat protein [G 98.8 5.5E-07 1.2E-11 82.3 18.3 224 109-335 14-279 (1189)
306 COG5170 CDC55 Serine/threonine 98.8 5.8E-08 1.3E-12 79.7 10.6 228 108-355 25-321 (460)
307 KOG2066 Vacuolar assembly/sort 98.8 2.1E-07 4.5E-12 86.1 15.1 186 66-344 39-233 (846)
308 KOG2114 Vacuolar assembly/sort 98.8 2.5E-06 5.3E-11 79.9 21.6 209 68-313 27-255 (933)
309 KOG1064 RAVE (regulator of V-A 98.8 7.7E-08 1.7E-12 96.2 11.7 167 159-354 2204-2376(2439)
310 KOG2695 WD40 repeat protein [G 98.7 5.8E-08 1.3E-12 80.8 9.1 169 83-323 228-401 (425)
311 KOG0882 Cyclophilin-related pe 98.7 1E-07 2.2E-12 82.2 10.4 196 108-354 8-241 (558)
312 KOG1275 PAB-dependent poly(A) 98.7 3.3E-07 7.1E-12 86.0 13.8 153 80-299 188-340 (1118)
313 PF11768 DUF3312: Protein of u 98.7 0.00021 4.7E-09 64.8 31.1 77 268-347 256-332 (545)
314 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.9E-13 94.7 4.6 204 100-353 1092-1300(1516)
315 PRK11138 outer membrane biogen 98.7 1.2E-05 2.7E-10 73.6 23.4 248 80-343 121-393 (394)
316 PRK11138 outer membrane biogen 98.7 2.2E-05 4.8E-10 71.9 24.4 250 80-352 70-361 (394)
317 PF06433 Me-amine-dh_H: Methyl 98.6 2.2E-05 4.9E-10 67.2 21.0 252 89-353 17-329 (342)
318 KOG1008 Uncharacterized conser 98.6 1.7E-08 3.7E-13 90.7 1.5 243 66-387 56-317 (783)
319 PRK02888 nitrous-oxide reducta 98.5 1.2E-05 2.6E-10 74.4 18.6 196 74-302 200-405 (635)
320 PF03178 CPSF_A: CPSF A subuni 98.5 9.3E-05 2E-09 65.7 23.4 221 89-341 2-262 (321)
321 PF07433 DUF1513: Protein of u 98.5 4.1E-05 8.9E-10 64.8 19.4 157 72-241 56-254 (305)
322 PF04841 Vps16_N: Vps16, N-ter 98.5 0.0003 6.5E-09 64.2 26.0 198 90-325 62-270 (410)
323 PF11768 DUF3312: Protein of u 98.4 9.1E-06 2E-10 73.4 14.8 76 64-142 257-332 (545)
324 PRK02888 nitrous-oxide reducta 98.4 9.8E-05 2.1E-09 68.6 21.5 259 81-345 68-405 (635)
325 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00059 1.3E-08 55.5 24.1 114 74-202 18-134 (354)
326 PF06977 SdiA-regulated: SdiA- 98.4 0.00021 4.6E-09 59.6 21.4 222 61-341 16-247 (248)
327 PF13360 PQQ_2: PQQ-like domai 98.4 0.00018 3.9E-09 60.9 21.7 188 80-307 37-236 (238)
328 KOG3617 WD40 and TPR repeat-co 98.4 7.6E-06 1.7E-10 76.6 13.2 71 69-140 62-132 (1416)
329 KOG1645 RING-finger-containing 98.4 2.8E-05 6E-10 66.6 15.0 94 91-237 175-269 (463)
330 KOG2066 Vacuolar assembly/sort 98.3 6E-06 1.3E-10 76.8 11.2 151 167-356 43-199 (846)
331 KOG3617 WD40 and TPR repeat-co 98.3 1.4E-05 3.1E-10 74.9 13.5 107 70-191 19-131 (1416)
332 KOG1920 IkappaB kinase complex 98.3 0.00025 5.4E-09 69.6 21.9 198 109-346 68-324 (1265)
333 KOG2314 Translation initiation 98.3 7.9E-05 1.7E-09 66.7 17.2 186 67-293 347-559 (698)
334 COG3391 Uncharacterized conser 98.3 0.0023 5.1E-08 58.1 27.0 250 68-353 32-292 (381)
335 cd00216 PQQ_DH Dehydrogenases 98.3 0.00085 1.8E-08 63.2 24.6 257 80-353 62-433 (488)
336 PF04053 Coatomer_WDAD: Coatom 98.3 0.00063 1.4E-08 62.2 22.7 237 62-347 28-265 (443)
337 PF00780 CNH: CNH domain; Int 98.3 0.00088 1.9E-08 58.1 23.1 247 80-355 8-266 (275)
338 COG3386 Gluconolactonase [Carb 98.2 0.00087 1.9E-08 58.1 21.9 227 73-333 31-274 (307)
339 PF14583 Pectate_lyase22: Olig 98.2 0.0041 8.8E-08 54.8 27.8 255 73-344 42-381 (386)
340 COG0823 TolB Periplasmic compo 98.1 0.00024 5.1E-09 64.7 17.5 193 99-333 182-388 (425)
341 KOG2114 Vacuolar assembly/sort 98.1 0.00036 7.9E-09 65.9 18.6 201 116-352 30-251 (933)
342 PF02897 Peptidase_S9_N: Proly 98.1 0.0083 1.8E-07 55.5 29.4 242 67-348 124-408 (414)
343 COG0823 TolB Periplasmic compo 98.1 0.00047 1E-08 62.8 18.1 157 65-236 191-360 (425)
344 KOG3621 WD40 repeat-containing 98.1 0.0032 7E-08 58.5 22.9 119 65-192 32-155 (726)
345 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0045 9.7E-08 50.5 20.9 66 80-145 64-129 (354)
346 cd00216 PQQ_DH Dehydrogenases 98.0 0.014 3E-07 55.2 26.7 229 80-312 111-435 (488)
347 PF04053 Coatomer_WDAD: Coatom 98.0 0.0019 4E-08 59.2 19.5 143 163-346 32-175 (443)
348 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0096 2.1E-07 54.6 24.2 167 58-236 72-248 (410)
349 KOG1008 Uncharacterized conser 98.0 2.9E-06 6.3E-11 76.8 1.4 162 62-236 98-277 (783)
350 PF08553 VID27: VID27 cytoplas 98.0 0.00045 9.7E-09 66.8 16.0 139 183-344 504-647 (794)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0062 1.4E-07 55.1 22.2 67 285-353 228-299 (395)
352 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0014 3.1E-08 46.3 13.8 66 69-138 2-70 (111)
353 smart00320 WD40 WD40 repeats. 97.9 5.4E-05 1.2E-09 42.7 5.6 39 99-137 2-40 (40)
354 KOG4640 Anaphase-promoting com 97.8 8.8E-05 1.9E-09 67.5 8.7 78 66-145 20-98 (665)
355 smart00320 WD40 WD40 repeats. 97.8 3E-05 6.5E-10 43.8 4.1 38 57-95 3-40 (40)
356 KOG3621 WD40 repeat-containing 97.8 0.00028 6E-09 65.2 11.8 124 108-302 32-155 (726)
357 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.012 2.6E-07 53.0 22.5 240 66-333 42-346 (353)
358 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.004 8.7E-08 56.1 18.2 214 118-344 1-266 (353)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.026 5.7E-07 53.5 24.1 159 80-239 121-338 (527)
360 PF08596 Lgl_C: Lethal giant l 97.7 0.0027 5.9E-08 57.3 16.2 173 62-242 82-298 (395)
361 KOG4640 Anaphase-promoting com 97.7 0.00021 4.5E-09 65.2 8.7 80 271-352 20-100 (665)
362 COG3386 Gluconolactonase [Carb 97.7 0.017 3.7E-07 50.2 19.7 207 116-353 31-251 (307)
363 COG3391 Uncharacterized conser 97.7 0.044 9.6E-07 49.9 24.0 219 68-325 75-309 (381)
364 PF06433 Me-amine-dh_H: Methyl 97.5 0.048 1E-06 47.3 26.1 225 71-312 40-331 (342)
365 KOG2444 WD40 repeat protein [G 97.5 0.00023 5E-09 56.7 5.7 107 217-346 71-179 (238)
366 KOG2395 Protein involved in va 97.5 0.0032 6.9E-08 56.7 13.2 150 172-344 342-500 (644)
367 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.012 2.6E-07 41.7 13.3 97 211-340 10-110 (111)
368 KOG4499 Ca2+-binding protein R 97.4 0.038 8.2E-07 44.7 16.8 224 80-331 28-271 (310)
369 PF05694 SBP56: 56kDa selenium 97.4 0.086 1.9E-06 47.2 21.6 242 80-334 88-393 (461)
370 COG3490 Uncharacterized protei 97.3 0.046 1E-06 45.6 16.8 243 70-342 71-346 (366)
371 KOG4441 Proteins containing BT 97.3 0.073 1.6E-06 51.1 20.8 224 80-347 286-549 (571)
372 PF15492 Nbas_N: Neuroblastoma 97.3 0.045 9.8E-07 45.6 16.6 179 32-242 51-267 (282)
373 COG3204 Uncharacterized protei 97.3 0.06 1.3E-06 45.2 17.2 171 62-236 81-265 (316)
374 PF08553 VID27: VID27 cytoplas 97.3 0.013 2.8E-07 57.2 15.4 141 85-234 500-647 (794)
375 PRK13616 lipoprotein LpqB; Pro 97.3 0.098 2.1E-06 50.3 21.2 205 65-340 348-564 (591)
376 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0011 2.3E-08 39.1 5.0 35 314-349 11-45 (47)
377 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0011 2.4E-08 39.0 5.0 34 66-101 11-44 (47)
378 PF10168 Nup88: Nuclear pore c 97.2 0.15 3.3E-06 50.0 22.2 38 203-240 146-185 (717)
379 PHA02713 hypothetical protein; 97.2 0.068 1.5E-06 51.3 19.5 64 282-347 463-536 (557)
380 PF06977 SdiA-regulated: SdiA- 97.2 0.098 2.1E-06 44.0 17.8 133 204-352 65-208 (248)
381 KOG2444 WD40 repeat protein [G 97.2 0.00085 1.8E-08 53.6 5.2 61 217-302 115-178 (238)
382 PF03178 CPSF_A: CPSF A subuni 97.1 0.083 1.8E-06 47.0 18.2 160 184-345 3-203 (321)
383 KOG2280 Vacuolar assembly/sort 97.1 0.051 1.1E-06 51.5 16.6 221 89-345 64-298 (829)
384 COG3490 Uncharacterized protei 97.1 0.047 1E-06 45.6 14.5 157 73-240 120-316 (366)
385 PHA02713 hypothetical protein; 97.0 0.051 1.1E-06 52.2 16.6 31 282-312 512-544 (557)
386 KOG2079 Vacuolar assembly/sort 97.0 0.019 4E-07 56.5 13.1 102 80-190 100-202 (1206)
387 KOG1897 Damage-specific DNA bi 96.9 0.54 1.2E-05 46.5 25.7 77 66-142 530-616 (1096)
388 KOG2079 Vacuolar assembly/sort 96.9 0.0054 1.2E-07 60.0 8.6 105 217-347 100-206 (1206)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.42 9.1E-06 43.5 23.0 86 269-354 305-408 (415)
390 PF05096 Glu_cyclase_2: Glutam 96.7 0.28 6.1E-06 41.2 19.2 192 67-290 45-249 (264)
391 KOG3630 Nuclear pore complex, 96.7 0.031 6.7E-07 55.4 12.6 144 163-331 100-260 (1405)
392 PRK13616 lipoprotein LpqB; Pro 96.6 0.068 1.5E-06 51.3 14.2 62 274-340 399-472 (591)
393 PF12234 Rav1p_C: RAVE protein 96.6 0.047 1E-06 51.9 12.8 123 67-191 30-156 (631)
394 PF05096 Glu_cyclase_2: Glutam 96.6 0.36 7.8E-06 40.6 20.5 195 100-333 34-249 (264)
395 TIGR03074 PQQ_membr_DH membran 96.6 0.5 1.1E-05 46.9 20.0 67 80-146 195-285 (764)
396 KOG4441 Proteins containing BT 96.5 0.29 6.2E-06 47.1 17.5 185 80-306 334-551 (571)
397 KOG2395 Protein involved in va 96.4 0.091 2E-06 47.8 12.7 144 82-234 349-500 (644)
398 PF15390 DUF4613: Domain of un 96.3 0.95 2.1E-05 42.3 24.6 152 67-233 20-185 (671)
399 PHA03098 kelch-like protein; P 96.2 0.52 1.1E-05 45.4 18.0 63 80-144 296-371 (534)
400 PF14870 PSII_BNR: Photosynthe 96.2 0.49 1.1E-05 41.1 15.5 155 65-231 143-301 (302)
401 PF14727 PHTB1_N: PTHB1 N-term 96.1 1 2.3E-05 41.1 27.2 151 76-233 34-203 (418)
402 COG3204 Uncharacterized protei 96.1 0.72 1.6E-05 39.1 20.4 172 105-303 81-265 (316)
403 PF08728 CRT10: CRT10; InterP 96.0 0.26 5.6E-06 47.6 14.2 164 65-233 39-245 (717)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.0 1.5 3.3E-05 41.9 19.7 224 121-350 69-339 (527)
405 PF14761 HPS3_N: Hermansky-Pud 95.9 0.46 1E-05 38.4 13.0 111 80-191 29-163 (215)
406 PF10214 Rrn6: RNA polymerase 95.9 2.3 4.9E-05 42.9 23.2 110 203-325 145-257 (765)
407 PF02897 Peptidase_S9_N: Proly 95.9 0.21 4.6E-06 46.3 13.1 115 206-346 126-262 (414)
408 TIGR02604 Piru_Ver_Nterm putat 95.9 1.4 2.9E-05 40.1 22.6 146 67-223 14-202 (367)
409 KOG3616 Selective LIM binding 95.8 0.2 4.3E-06 47.8 12.2 68 66-137 14-81 (1636)
410 PF15390 DUF4613: Domain of un 95.8 0.54 1.2E-05 43.8 14.6 124 204-344 57-186 (671)
411 TIGR03118 PEPCTERM_chp_1 conse 95.6 1.3 2.8E-05 37.9 21.7 74 280-354 209-289 (336)
412 PF10168 Nup88: Nuclear pore c 95.6 0.87 1.9E-05 44.9 16.1 34 270-303 145-181 (717)
413 PF07995 GSDH: Glucose / Sorbo 95.6 1.6 3.6E-05 38.9 25.4 263 68-339 3-330 (331)
414 KOG1900 Nuclear pore complex, 95.5 0.44 9.6E-06 48.6 14.0 172 58-237 71-275 (1311)
415 PF10647 Gmad1: Lipoprotein Lp 95.5 1.3 2.9E-05 37.7 22.1 152 111-294 25-188 (253)
416 KOG1897 Damage-specific DNA bi 95.5 3 6.6E-05 41.6 26.6 274 69-352 490-823 (1096)
417 PF10647 Gmad1: Lipoprotein Lp 95.5 1.1 2.3E-05 38.3 14.7 114 205-344 25-144 (253)
418 PHA03098 kelch-like protein; P 95.4 1.2 2.6E-05 42.9 16.8 64 282-347 437-514 (534)
419 PF00780 CNH: CNH domain; Int 95.2 1.8 4E-05 37.4 21.7 200 68-312 37-266 (275)
420 PF08728 CRT10: CRT10; InterP 95.1 2.1 4.6E-05 41.7 16.8 165 174-344 49-246 (717)
421 PF10313 DUF2415: Uncharacteri 94.9 0.15 3.3E-06 29.1 5.4 32 67-98 1-34 (43)
422 PHA02790 Kelch-like protein; P 94.9 3.4 7.5E-05 39.1 17.9 61 80-142 273-342 (480)
423 PF12234 Rav1p_C: RAVE protein 94.9 0.97 2.1E-05 43.4 13.8 112 206-344 32-156 (631)
424 PF14583 Pectate_lyase22: Olig 94.9 2.7 5.9E-05 37.6 22.5 105 95-212 16-131 (386)
425 PF10313 DUF2415: Uncharacteri 94.8 0.2 4.4E-06 28.6 5.6 33 204-236 1-35 (43)
426 TIGR02604 Piru_Ver_Nterm putat 94.8 3 6.5E-05 37.9 16.6 148 165-333 15-202 (367)
427 COG5167 VID27 Protein involved 94.7 1.2 2.6E-05 40.8 13.1 143 173-344 477-632 (776)
428 PRK10115 protease 2; Provision 94.7 5.1 0.00011 39.8 29.3 72 67-141 127-209 (686)
429 KOG4499 Ca2+-binding protein R 94.3 2.5 5.5E-05 34.6 13.6 149 66-222 108-272 (310)
430 KOG4460 Nuclear pore complex, 94.3 1.3 2.8E-05 40.7 12.3 27 111-137 105-131 (741)
431 COG5276 Uncharacterized conser 94.3 3 6.6E-05 35.5 22.4 161 109-309 86-249 (370)
432 PF07569 Hira: TUP1-like enhan 94.2 0.47 1E-05 39.3 9.0 70 279-349 18-100 (219)
433 COG4257 Vgb Streptogramin lyas 94.2 3 6.6E-05 35.1 15.7 188 111-346 63-264 (353)
434 PHA02790 Kelch-like protein; P 94.1 4.8 0.0001 38.2 16.8 60 282-346 407-472 (480)
435 COG3823 Glutamine cyclotransfe 94.0 2.7 5.9E-05 33.8 13.2 180 80-289 57-247 (262)
436 PF08801 Nucleoporin_N: Nup133 93.9 4.8 0.0001 37.4 16.2 31 272-302 190-220 (422)
437 KOG1983 Tomosyn and related SN 93.8 4 8.7E-05 42.2 16.4 72 270-348 197-268 (993)
438 PF14761 HPS3_N: Hermansky-Pud 93.6 3.3 7.1E-05 33.7 14.6 158 177-344 32-214 (215)
439 KOG1916 Nuclear protein, conta 93.6 0.072 1.6E-06 51.6 3.6 79 61-141 127-215 (1283)
440 KOG1900 Nuclear pore complex, 93.3 2.5 5.5E-05 43.5 13.6 157 173-347 89-275 (1311)
441 COG4590 ABC-type uncharacteriz 93.2 0.38 8.2E-06 43.2 7.1 245 78-349 126-391 (733)
442 KOG1916 Nuclear protein, conta 93.0 0.11 2.3E-06 50.5 3.8 71 66-138 180-264 (1283)
443 PF07569 Hira: TUP1-like enhan 92.9 0.77 1.7E-05 38.0 8.3 64 76-141 20-97 (219)
444 PF14870 PSII_BNR: Photosynthe 92.9 6 0.00013 34.6 23.9 117 202-347 143-263 (302)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 1.9 4.1E-05 39.4 10.8 81 58-141 299-400 (415)
446 COG3823 Glutamine cyclotransfe 92.4 4.2 9.2E-05 32.7 11.1 151 174-353 55-213 (262)
447 COG5167 VID27 Protein involved 92.4 1.7 3.7E-05 39.9 10.1 141 82-234 483-632 (776)
448 PF05694 SBP56: 56kDa selenium 92.1 9.3 0.0002 34.9 20.6 194 120-346 86-344 (461)
449 KOG3630 Nuclear pore complex, 91.9 1.5 3.2E-05 44.3 9.9 135 68-215 102-255 (1405)
450 PRK13684 Ycf48-like protein; P 91.9 9.1 0.0002 34.3 17.7 153 66-232 172-329 (334)
451 TIGR03074 PQQ_membr_DH membran 91.7 16 0.00035 36.8 25.7 161 80-241 261-484 (764)
452 PF03022 MRJP: Major royal jel 91.7 8.5 0.00018 33.5 13.7 174 165-345 2-216 (287)
453 PF14781 BBS2_N: Ciliary BBSom 91.6 4.4 9.5E-05 30.1 13.2 117 114-236 3-127 (136)
454 PF12657 TFIIIC_delta: Transcr 91.6 1.7 3.7E-05 34.5 8.6 70 166-235 7-122 (173)
455 PF07995 GSDH: Glucose / Sorbo 91.4 5.6 0.00012 35.6 12.5 112 205-337 3-136 (331)
456 PF08801 Nucleoporin_N: Nup133 91.4 7.5 0.00016 36.2 13.9 31 315-345 190-220 (422)
457 COG5290 IkappaB kinase complex 91.1 2.6 5.7E-05 41.0 10.2 102 112-223 249-356 (1243)
458 PF11635 Med16: Mediator compl 91.0 19 0.00041 36.4 20.7 70 270-339 258-345 (753)
459 PF03088 Str_synth: Strictosid 90.6 2.7 5.8E-05 28.9 7.5 42 289-332 33-74 (89)
460 KOG4659 Uncharacterized conser 90.5 25 0.00055 36.9 20.3 35 63-97 344-384 (1899)
461 PF14727 PHTB1_N: PTHB1 N-term 90.4 14 0.00031 33.9 19.7 151 79-232 145-316 (418)
462 COG4257 Vgb Streptogramin lyas 90.1 11 0.00023 32.0 19.7 234 67-345 62-306 (353)
463 TIGR02276 beta_rpt_yvtn 40-res 89.9 2.2 4.8E-05 24.1 5.9 32 281-312 1-33 (42)
464 TIGR02276 beta_rpt_yvtn 40-res 89.8 2 4.4E-05 24.2 5.7 32 76-107 1-32 (42)
465 KOG2247 WD40 repeat-containing 89.8 0.048 1E-06 49.1 -1.8 146 68-230 36-184 (615)
466 KOG2377 Uncharacterized conser 89.7 11 0.00024 34.4 12.3 105 202-330 65-169 (657)
467 KOG4460 Nuclear pore complex, 89.7 17 0.00038 33.8 13.9 34 273-306 167-203 (741)
468 KOG2377 Uncharacterized conser 89.6 8.2 0.00018 35.2 11.4 144 70-223 26-173 (657)
469 PF11715 Nup160: Nucleoporin N 89.3 1.5 3.3E-05 42.4 7.7 72 281-352 156-256 (547)
470 PRK14131 N-acetylneuraminic ac 89.2 17 0.00038 33.2 19.0 40 295-335 314-353 (376)
471 PRK10115 protease 2; Provision 88.8 27 0.00059 34.9 21.6 69 166-236 129-209 (686)
472 TIGR03606 non_repeat_PQQ dehyd 88.8 20 0.00044 33.4 15.3 33 203-236 29-61 (454)
473 PLN00033 photosystem II stabil 88.3 20 0.00044 32.9 17.5 147 69-231 241-396 (398)
474 COG5308 NUP170 Nuclear pore co 88.2 5.3 0.00011 39.6 10.0 149 87-240 100-281 (1263)
475 PF14781 BBS2_N: Ciliary BBSom 87.8 9.4 0.0002 28.4 12.9 70 70-142 2-84 (136)
476 PF07676 PD40: WD40-like Beta 87.6 2.5 5.4E-05 23.5 4.9 33 62-94 4-38 (39)
477 PF12657 TFIIIC_delta: Transcr 87.2 6.2 0.00013 31.3 8.7 30 111-140 87-122 (173)
478 COG4590 ABC-type uncharacteriz 87.0 5.1 0.00011 36.4 8.6 80 56-137 210-296 (733)
479 KOG2063 Vacuolar assembly/sort 87.0 38 0.00082 34.5 16.4 62 80-142 27-99 (877)
480 KOG1896 mRNA cleavage and poly 86.4 45 0.00098 34.8 18.8 154 122-301 1047-1213(1366)
481 KOG2247 WD40 repeat-containing 86.1 0.14 3E-06 46.3 -1.3 131 114-284 39-172 (615)
482 COG5290 IkappaB kinase complex 85.9 39 0.00084 33.5 15.8 31 108-138 111-141 (1243)
483 KOG3616 Selective LIM binding 85.7 16 0.00034 35.8 11.4 108 109-232 14-124 (1636)
484 PF12768 Rax2: Cortical protei 85.6 17 0.00037 31.5 11.0 55 89-143 16-76 (281)
485 KOG1898 Splicing factor 3b, su 85.2 21 0.00046 36.4 12.4 39 66-104 582-625 (1205)
486 KOG2280 Vacuolar assembly/sort 85.1 41 0.00089 33.1 18.2 159 66-239 83-251 (829)
487 PF10433 MMS1_N: Mono-function 85.1 37 0.0008 32.5 24.3 248 66-343 43-341 (504)
488 PF11715 Nup160: Nucleoporin N 84.7 3.2 6.8E-05 40.2 7.1 38 272-309 215-256 (547)
489 PRK13684 Ycf48-like protein; P 84.6 29 0.00064 31.1 24.3 77 270-349 213-292 (334)
490 PF07250 Glyoxal_oxid_N: Glyox 84.4 8.2 0.00018 32.5 8.3 125 72-201 72-207 (243)
491 COG5276 Uncharacterized conser 84.3 26 0.00057 30.2 25.7 151 66-237 86-244 (370)
492 TIGR03548 mutarot_permut cycli 84.3 30 0.00064 30.8 12.9 150 174-347 72-282 (323)
493 PF07676 PD40: WD40-like Beta 84.2 5.3 0.00011 22.1 5.4 30 202-231 7-38 (39)
494 KOG1898 Splicing factor 3b, su 83.8 56 0.0012 33.6 18.1 108 209-344 939-1048(1205)
495 COG1520 FOG: WD40-like repeat 82.6 38 0.00083 30.8 21.8 109 80-200 69-180 (370)
496 smart00036 CNH Domain found in 82.5 34 0.00073 30.1 25.5 59 80-141 14-75 (302)
497 PF07250 Glyoxal_oxid_N: Glyox 82.2 27 0.00058 29.5 10.5 147 185-353 48-206 (243)
498 PF01011 PQQ: PQQ enzyme repea 81.0 4.7 0.0001 22.3 4.0 26 81-106 2-27 (38)
499 smart00564 PQQ beta-propeller 80.6 4.2 9.2E-05 21.4 3.7 26 80-105 7-32 (33)
500 COG5308 NUP170 Nuclear pore co 80.4 19 0.00042 36.0 10.0 156 176-350 95-281 (1263)
No 1
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-74 Score=465.84 Aligned_cols=416 Identities=56% Similarity=0.977 Sum_probs=398.4
Q ss_pred CeeeEEecCCcccccccccccccccccCCCCCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCc
Q 013873 1 MKVKVISRSTDEFTRERSQDLQRVYHNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLK 80 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 80 (434)
|||++|+|+|.+++.++..+.+..+|++||.+||+++..+|.+++++.+++++++.||+..|.||.++|.|++=+|....
T Consensus 1 MKik~I~r~p~~y~~e~~~~~~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls 80 (433)
T KOG0268|consen 1 MKVKTISRNPDNYVRETKLDLQRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLS 80 (433)
T ss_pred CceeEeecCcccccchhhhcccccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999778
Q ss_pred eEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE
Q 013873 81 GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY 160 (434)
Q Consensus 81 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (434)
.+++|+.||.|+|||+.+..+..++..|.+.|..|++.. ..++++|.|.+|+.|.++. .+...+
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~--------------~p~~ti 144 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG--------------PPLHTI 144 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--------------Ccceee
Confidence 899999999999999999999999999999999999986 5789999999999999864 366667
Q ss_pred EecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce
Q 013873 161 VWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR 240 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 240 (434)
.....+..++.+..+..++++|..|.|||.....++..+....+.|.++.|+|....+|+++++|+.|.+||++...++.
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred eccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred EEEe-----------------eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 241 KVIM-----------------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 241 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
++.+ .++++.++|.||++.+..+..++.+|.+.|.+++|||.|+-|++||.|.+|+||..+.+
T Consensus 225 KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 225 KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 7654 38899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhcc
Q 013873 304 RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHR 383 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 383 (434)
....+++......|.|+.||.|.+|+++|++|+.|++|.....+.+..+.+++...+.|.+.++++|.|.++|+.|+.|.
T Consensus 305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR 384 (433)
T KOG0268|consen 305 HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHR 384 (433)
T ss_pred cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccchhcccceeecC
Q 013873 384 HLPKPIYKAASLRRTMMEAERRKAERRKAHSAPGSIVTEPVRKRRIIKEVE 434 (434)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 434 (434)
+.|..++++.+.+..+.+.++++|.++++++++ ++..++|+|.++.|+|
T Consensus 385 ~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~~~~kk~vv~~~~ 433 (433)
T KOG0268|consen 385 HLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYAPERKKHIVGEVE 433 (433)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcchhhcceeeeecC
Confidence 999999999999999999999999999999998 8999999999999876
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-49 Score=324.31 Aligned_cols=299 Identities=20% Similarity=0.371 Sum_probs=263.1
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
+...+.||.++|.|+.|+|+| ..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 456788999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-----CCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-----EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
..++... ...+..|...|.+++|.| ....+++++ |+++|||+..++++..+.+|...|+|+.
T Consensus 186 pktg~~~-----------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 186 PKTGQQI-----------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred CCCCCcc-----------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 9888642 233445677888888876 556788876 6799999999999999999999999999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcce--------------------------------------------------
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPAR-------------------------------------------------- 240 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------------- 240 (434)
|-- ..++++|+.|++|++|+...+...+
T Consensus 255 wGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 WGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 974 4589999999999999976532111
Q ss_pred ----EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCcc
Q 013873 241 ----KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
.....++.+..+++|+.....+++....+|..-|+.+.||||++++|+++.|..|++||-++|+.+..+..|- ..
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv-~~ 411 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV-AA 411 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc-ce
Confidence 1245588999999999999999999999999999999999999999999999999999999999998887654 89
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
|..++|+.|.++|++|+.|.+++||++.+.++..-+. +|..+|.++.|.|.-...
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-----------------Gh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-----------------GHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-----------------CCCceEEEEEecCCCcee
Confidence 9999999999999999999999999999988765553 688888888998876543
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-46 Score=307.40 Aligned_cols=259 Identities=24% Similarity=0.406 Sum_probs=238.3
Q ss_pred HHHHHhhhhccccccccccCCCCCeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCe
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 123 (434)
-+..++|+....+.+.+|.||++.|.++.|+|. ...-+|||+.||++++|++.+..++..+.+|...|..++|+|+|++
T Consensus 196 sG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 196 SGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred CCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 445779999888999999999999999999998 3468999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeeec
Q 013873 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQW 201 (434)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~ 201 (434)
|+|++.|.+-++||+.++. .....-.|...+.+++|++||.++++|+-+ -+|||++++.++..+.+
T Consensus 276 L~TasfD~tWRlWD~~tk~------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKS------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred eeecccccchhhcccccch------------hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 9999999999999999884 444555677899999999999999999854 89999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
|...|.+++|+|+| ..++||+.|++++|||++.......+ .+|.+-|+.+.|+|
T Consensus 344 H~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~i-------------------------pAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 344 HIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTI-------------------------PAHSNLVSQVKYSP 397 (459)
T ss_pred cccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceec-------------------------ccccchhhheEecc
Confidence 99999999999999 89999999999999999988775544 58999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 282 -TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 282 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
.|.+|+|++.|+++++|...+..++..+.+|. +.|.++++++|+.+|++++.|.++++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe-~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE-GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCc-cceEEEEeccCCceEEEeccCceeeecc
Confidence 78899999999999999999999988886655 8999999999999999999999999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-43 Score=291.59 Aligned_cols=259 Identities=21% Similarity=0.314 Sum_probs=231.4
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC--CCeEEEeeCCCcEEEee
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWN 137 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~dg~v~iwd 137 (434)
..--|-+.+|..+.|++++ ..|+|||.+|.++||+..+...+++|.+|.+.|.++.|+|. +..+++|+.||++++|+
T Consensus 169 ~SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3335678899999999999 99999999999999999999999999999999999999996 56899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
+++.. ....+..|...+..++|+|+|.++++++ .+-++||++++..+....+|...|.+++|+|+|
T Consensus 248 ~~~e~------------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 248 LSQET------------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred cCCCc------------chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 98753 2333445667888999999999999998 459999999999999999999999999999999
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
.++++|+.|..-++||++++..+..+ .+|..+|.+++|+|+|..|||||.|+++
T Consensus 316 -SL~~tGGlD~~~RvWDlRtgr~im~L-------------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 316 -SLAATGGLDSLGRVWDLRTGRCIMFL-------------------------AGHIKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred -ceeeccCccchhheeecccCcEEEEe-------------------------cccccceeeEeECCCceEEeecCCCCcE
Confidence 89999999999999999998776544 5899999999999999999999999999
Q ss_pred EEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 296 RIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
+|||++....+.++..| ..-|+.|.|+| .|.+|+|++.|++++||...+.++++++.+++..
T Consensus 370 kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred EEeeecccccceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence 99999988886666544 48899999999 8899999999999999999999999888654443
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-42 Score=283.56 Aligned_cols=296 Identities=24% Similarity=0.340 Sum_probs=253.9
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-EEeeccC
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQ 109 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~ 109 (434)
.+.|..............++|+..+.....+.+||...|.|++|+||| ..||+|+.||+|++||..+++++ ..+.+|.
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcc
Confidence 366666777777788889999999999999999999999999999999 99999999999999999998765 4689999
Q ss_pred CCeeEEEEcC-----CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--
Q 013873 110 GAVRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (434)
Q Consensus 110 ~~v~~i~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (434)
..|++++|.| ..++|++++.||.|+|||+..+. .......|..+++|+.|..+|. +++++
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~------------~~~~lsgHT~~VTCvrwGG~gl-iySgS~D 267 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT------------CVRTLSGHTASVTCVRWGGEGL-IYSGSQD 267 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCce------------EEEEeccCccceEEEEEcCCce-EEecCCC
Confidence 9999999976 56799999999999999997763 4455667788999999987764 44444
Q ss_pred CeEEEEeCCCCcceeeeecCCCceEEEEEc-----------CCC------------------------CcEEEEEecCCc
Q 013873 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFN-----------PAE------------------------PNVLATTASDRS 227 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~-----------~~~------------------------~~~l~~~~~dg~ 227 (434)
++|++|+...+.....+.+|...|+.++.+ |.+ +..|++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 679999999999999999999999999876 222 235999999999
Q ss_pred EEEEEccCC-------------------CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 228 ITLYDLRMS-------------------SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 228 i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
+.+|+.... .|...++..++.+..+.+|+.+... ....+.+|-++|+.++|+.|.++|++
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc-hhhhhhhccceeEEEEeccCccEEEE
Confidence 999997543 2344456778899999999988654 44567899999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
|+.|.++++||+++.++..-+.. |...|.++.|+|||..+++|+.|..+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCC-CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999887766654 448999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=258.21 Aligned_cols=268 Identities=22% Similarity=0.372 Sum_probs=230.8
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
.++|+||.+.|.++.|++|. ++|++++.||.+.|||.-+....+.++-....|..++|+|.|+++|+||-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 47899999999999999998 99999999999999999999888888888899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
.+...... ......+..|.+-+.++.|-+|+.++...+ .+..+||+++++.+..|.+|.+.|.+++++|..++
T Consensus 127 s~~d~~g~------~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGN------VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccccccc------ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 75421100 012223445566777788887665544333 45999999999999999999999999999996669
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
.|++|+.|+..++||+|.+...+.+ .+|...|+++.|.|+|.-|++|+.|++.++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF-------------------------~ghesDINsv~ffP~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTF-------------------------EGHESDINSVRFFPSGDAFATGSDDATCRL 255 (343)
T ss_pred eEEecccccceeeeeccCcceeEee-------------------------cccccccceEEEccCCCeeeecCCCceeEE
Confidence 9999999999999999988766654 599999999999999999999999999999
Q ss_pred EeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 298 FQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 298 wd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
||++....+..+... ...+|++++||..|++|++|..|..+.+||.-.++.+..+.+++++
T Consensus 256 yDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 256 YDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred EeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 999999888888543 2468999999999999999999999999999999999888655444
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.3e-40 Score=253.43 Aligned_cols=275 Identities=17% Similarity=0.298 Sum_probs=233.5
Q ss_pred HHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeE
Q 013873 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
.+++|+..++.+.++++.-.+.|+.+...|++ ..||+++. ..|++||++++. ++.++.+|+..|+++.|..+|+++
T Consensus 21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM 98 (311)
T ss_pred eeeeeehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence 57899999999999999999999999999998 88888875 579999999875 588999999999999999999999
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeee-c
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ-W 201 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~-~ 201 (434)
++|+.||+++|||++.. .+...+.+..++.++..+|+..-|++++ |.|++||+....+...+. .
T Consensus 99 yTgseDgt~kIWdlR~~-------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSL-------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EecCCCceEEEEeccCc-------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999875 3445566678999999999999998887 679999998876554443 3
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
....|.++...|+| ..++.+...|..++|++-.......+ .++..+..|++.+..+.+||
T Consensus 166 ~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l-------------------~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASEL-------------------EPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccc-------------------eEhhheecccceEEEEEECC
Confidence 35689999999999 78999999999999998764322222 34445678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhh
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
|+++||++|.|.+++||+.++.-........|...+..++||.||.||++|+.|+.+++|++..++.+....++.
T Consensus 226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 999999999999999999988733333344455899999999999999999999999999999999887776543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-39 Score=251.78 Aligned_cols=258 Identities=20% Similarity=0.364 Sum_probs=224.8
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-----CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
+..+|.+|++.|+.++..+.++..+++++.|.++.+|++.. |.+.+.+.+|...|..+..+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45688999999999999999889999999999999998754 5678889999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecC-CCceEEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWG-TDTVISV 209 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~-~~~i~~i 209 (434)
+++||+.++ .....+..|...+.+++++++...+++++. +|.+|++............ .+.|.|+
T Consensus 87 lrlWDl~~g------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 87 LRLWDLATG------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCV 154 (315)
T ss_pred EEEEEecCC------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEE
Confidence 999999887 356677788889999999999999999984 5999998766555444443 7899999
Q ss_pred EEcCCC-CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 210 RFNPAE-PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 210 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
.|+|+. ..++++++.|+++++||+++.+....+ .+|.+.++.+++||||.++++
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-------------------------~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-------------------------IGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-------------------------ccccccEEEEEECCCCCEEec
Confidence 999984 468999999999999999887665544 489999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
|+.||.+.+||++.++.+..+.. ...|.+++|+|+.-.|+.+.. ..|+|||+.++..+..+.+.
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred CCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhcccc
Confidence 99999999999999998666543 378999999999887777654 46999999999998887654
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-39 Score=251.93 Aligned_cols=249 Identities=22% Similarity=0.315 Sum_probs=214.1
Q ss_pred ccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcE
Q 013873 54 FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTV 133 (434)
Q Consensus 54 ~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v 133 (434)
..+..++.|.||+..|..+..+++| ++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 3455688999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEe--cCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCcceeeeecCCCceE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVW--KNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVI 207 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (434)
++|++-... ....... ..-+.++.|+|+ ..++++++ +.+++||+++.+....+.+|.+.++
T Consensus 130 klwnt~g~c-------------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 130 KLWNTLGVC-------------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred eeeeecccE-------------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 999985431 1111111 457899999998 56777776 5699999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
.++++|+| .+.++|+.||.+.+||++..+..+.+ +|...|.+++|+|+.-+|+
T Consensus 197 t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl--------------------------~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 197 TVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL--------------------------EAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred EEEECCCC-CEEecCCCCceEEEEEccCCceeEec--------------------------cCCCeEeeEEecCCceeEe
Confidence 99999999 89999999999999999988876655 7899999999999876666
Q ss_pred EEeCCCcEEEEeCCCCeeeeEEeccC--------CccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 288 TGSYDRTIRIFQYNGGRSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.+. +..|+|||+.++..+..+.... .....+++|++||..|++|-.|+.|++|.+.
T Consensus 250 ~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 250 AAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 555 5669999999988776653221 1234678999999999999999999999875
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-39 Score=289.64 Aligned_cols=252 Identities=27% Similarity=0.511 Sum_probs=224.3
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-------------------------------ceeEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------------------------------RTVCQYS 106 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-------------------------------~~~~~~~ 106 (434)
+..++..-...++|..|++++ .+||.|-.|..|++|.+... ....++.
T Consensus 370 c~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 556666677899999999998 89999999999999988731 1234467
Q ss_pred ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--e
Q 013873 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--Q 184 (434)
Q Consensus 107 ~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 184 (434)
+|.++|..+.|+|+.++|++|+.|+++++|.+.+.. ..+....|..+++.+.|+|.|-+|+++++ +
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s------------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS------------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccce------------eEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 999999999999999999999999999999998873 34444566779999999999999999985 4
Q ss_pred EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccce
Q 013873 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
.++|......++..+.+|.+.|.|+.|+|+. +++++|+.|.++++||+.++...+.
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRi----------------------- 572 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRI----------------------- 572 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEE-----------------------
Confidence 9999999999999999999999999999998 8999999999999999998876554
Q ss_pred eeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 265 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 265 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+.||.++|++++|||+|++|++|+.||.|.+||+.++..+..+..| .+.|.++.|+.||..||+|+.|..|++||+.
T Consensus 573 --F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 573 --FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred --ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 4699999999999999999999999999999999999998888776 6899999999999999999999999999987
Q ss_pred ccccc
Q 013873 345 ASEQL 349 (434)
Q Consensus 345 ~~~~~ 349 (434)
.....
T Consensus 650 ~~~~~ 654 (707)
T KOG0263|consen 650 KVIEL 654 (707)
T ss_pred hhccc
Confidence 65443
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-37 Score=263.57 Aligned_cols=302 Identities=17% Similarity=0.299 Sum_probs=245.0
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee---ccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
+-.|-.+++.|+.-|+|+.|+||| .+|++.+.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.|++++.|.
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 334567789999999999999999 999999999999999999999999998 8999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 211 (434)
+++|||+.+..+...+..... .......+.|..+..+.++.+|.|.+++.....++..+.+|...|+++..
T Consensus 258 t~KIWdVs~~slv~t~~~~~~---------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGST---------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV 328 (603)
T ss_pred eEEEEEeeccceEEEeecCCc---------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE
Confidence 999999998866544332211 12233445566555555666799999999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEE-------------------------------------------------
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKV------------------------------------------------- 242 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------------------------------------- 242 (434)
+|++ ..|++|+.||.|.-||...+...+..
T Consensus 329 ~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 329 SPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred cCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 9999 89999999999999998655322110
Q ss_pred --------------------------------------------------EeeecCceeEEEeeCCCCc-cceeeeeCcc
Q 013873 243 --------------------------------------------------IMRANEDCNCYSYDSRKLD-EAKCVHMGHE 271 (434)
Q Consensus 243 --------------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 271 (434)
...+..++.+++|...... ........|.
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 0006777888888877644 3344566899
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
++|++++||||+.+||+|...+.|.+||+.+.+........|...|.+++|+|+..++|+|+.|-.|.||++......-.
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 99999999999999999999999999999998875555555668999999999999999999999999999986544322
Q ss_pred CChhhhhhhHHHHHHHHhhccchhhhhhhhcc
Q 013873 352 LHPREQRKHAYHEAVKNRYKHLPEIKRIVRHR 383 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 383 (434)
+. -+|...|+.+.|--
T Consensus 568 ik----------------nAH~~gVn~v~wld 583 (603)
T KOG0318|consen 568 IK----------------NAHLGGVNSVAWLD 583 (603)
T ss_pred ec----------------cccccCceeEEEec
Confidence 22 25666688887743
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.5e-39 Score=270.10 Aligned_cols=274 Identities=19% Similarity=0.395 Sum_probs=234.4
Q ss_pred ccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 54 FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 54 ~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
.+...+.++.||+..|+++.|.|....+|++|+.|+.|+||++.. +.+++++.+|..+|.+++|+.+|..|++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 466778999999999999999994339999999999999999876 8899999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
|++||++++ .+...+.......++.++|++ +.+++|+ +.|+.||+++++.++.+..|-+.|..+
T Consensus 282 lKlwDtETG-------------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETG-------------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred eeeeccccc-------------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 999999998 456666677788999999998 7777776 569999999999999999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceE-------------------EEeeecCceeEEEeeCCCCc--cceeeee
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARK-------------------VIMRANEDCNCYSYDSRKLD--EAKCVHM 268 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 268 (434)
.|.+.+ ..|++.+.|+++++|+.+.+-+... .....+.++.+++|.....- .....+.
T Consensus 349 ~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 349 TFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred EEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 999988 7899999999999999887644332 33446667777777755432 2334556
Q ss_pred Ccc--cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEee
Q 013873 269 GHE--SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWK 342 (434)
Q Consensus 269 ~~~--~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~ 342 (434)
+|. +.-..+.|||||.+|++|+.||.+.+||.++-+....+..+ .+.+..+.|+| ....+|+++.||.|++|+
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 664 45667899999999999999999999999999888888766 48899999999 456799999999999996
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=275.56 Aligned_cols=277 Identities=17% Similarity=0.338 Sum_probs=235.3
Q ss_pred HHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE
Q 013873 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV 125 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 125 (434)
...-+|+.....++...+||...++|++++||| +++|||+.||.|+|||..++-+..+|..|++.|+.+.|+..|+.++
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence 345578888888999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC---eEEEEeCCCCcceeeeecC
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~ 202 (434)
+++-||+|+.||+.....-..+.. +......+++..|.|.++++++- .|.+|++.+|+.+..+.+|
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~-----------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTS-----------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred EeecCCeEEeeeecccceeeeecC-----------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 999999999999976644322222 12335678999999999999885 4999999999999999999
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
.++|.+++|+|.+ ..|++++.|.+|++||+-........ ..+...+..++|+|+
T Consensus 478 EgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEt-------------------------l~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 478 EGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVET-------------------------LEIRSDVLAVSFRPD 531 (893)
T ss_pred CCcceeeEEcccc-CeEEeccccceEEEEEeeccCceeee-------------------------EeeccceeEEEEcCC
Confidence 9999999999998 79999999999999998654322111 146678999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEec-------------------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHT-------------------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
|+.|++++.||.|.+||...+.....+.+ ......+.+++++||.+|++|+....|++|++
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999887655433211 11246889999999999999999999999999
Q ss_pred CcccccccCChhhhhhh
Q 013873 344 KASEQLGVLHPREQRKH 360 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~ 360 (434)
.++-+++.+.-..++.+
T Consensus 612 ~~~vllkkfqiS~N~sL 628 (893)
T KOG0291|consen 612 PEGVLLKKFQISDNRSL 628 (893)
T ss_pred chhheeeeEEeccccch
Confidence 99999988865554444
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=241.97 Aligned_cols=268 Identities=21% Similarity=0.328 Sum_probs=232.2
Q ss_pred hhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC------ceeEEeeccC
Q 013873 36 EKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR------RTVCQYSGHQ 109 (434)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~------~~~~~~~~h~ 109 (434)
.+..-........-+|+.++..-++.+.--...|-.++|+|.| +++|+|+.|+...||++.+. ...+.+.+|+
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 3333334445556689999988888888889999999999999 99999999999999999855 3456789999
Q ss_pred CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEE
Q 013873 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVD 186 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~ 186 (434)
+.+.|+.|.+| ..|+|++.|.+..+||++++. ....+..|...+.+++++| +++.+++++ +..+
T Consensus 146 gylScC~f~dD-~~ilT~SGD~TCalWDie~g~------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 146 GYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ceeEEEEEcCC-CceEecCCCceEEEEEcccce------------EEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 99999999885 579999999999999999984 4455567788999999999 999999987 5699
Q ss_pred EEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
+||++.+...+.|.+|...|+++.|.|+| .-|++|+.|++.++||+|....+..+.
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys----------------------- 268 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYS----------------------- 268 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeec-----------------------
Confidence 99999999999999999999999999999 789999999999999999876554431
Q ss_pred eeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 267 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 267 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
...-..+|++++||-.|++|++|..|.++.+||.-.++....+..| ...|+|+..+|||.-+++|+.|..++||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 1133568999999999999999999999999999888887777655 48999999999999999999999999994
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.8e-37 Score=245.54 Aligned_cols=277 Identities=22% Similarity=0.382 Sum_probs=229.4
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC-CCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA-NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
.++..+.||.+.|+.+.|+|+| ..||+|+.|..|.+|+.. ..+-...+++|.++|..+.|.++++.+++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 4566789999999999999998 999999999999999954 34556678899999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEc
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 212 (434)
||+++++...... .+..-+.++....-|..+++.+ +++++||+++...+..+.. .-.++++.|.
T Consensus 117 wD~~tG~~~rk~k------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~ 183 (338)
T KOG0265|consen 117 WDAETGKRIRKHK------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFK 183 (338)
T ss_pred Eecccceeeehhc------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEec
Confidence 9999996543332 3334455555555555555543 6799999999998888865 5679999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
..+ ..+.+|+-|+.|++||++....... +.+|..+|+.+..+|+|.++.+-+.|
T Consensus 184 d~s-~qv~sggIdn~ikvWd~r~~d~~~~-------------------------lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 184 DTS-DQVISGGIDNDIKVWDLRKNDGLYT-------------------------LSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ccc-cceeeccccCceeeeccccCcceEE-------------------------eecccCceeeEEeccCCCcccccccc
Confidence 887 6778999999999999988766554 46999999999999999999999999
Q ss_pred CcEEEEeCCCC----eeeeEEeccC---CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHH
Q 013873 293 RTIRIFQYNGG----RSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEA 365 (434)
Q Consensus 293 ~~i~iwd~~~~----~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
.++++||++.- +++..+..+. ......++|+|+++++.+|+.|..+++||..+...+..+.
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp------------ 305 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP------------ 305 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC------------
Confidence 99999998753 3345553321 2345678999999999999999999999999888777664
Q ss_pred HHHhhccchhhhhhhhccCCChHHH
Q 013873 366 VKNRYKHLPEIKRIVRHRHLPKPIY 390 (434)
Q Consensus 366 ~~~~~~~~~~v~~~~~~~~~~~~~~ 390 (434)
+|...|+++.|||.+|.+..
T Consensus 306 -----Gh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 306 -----GHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred -----CcceeEEEeeecCCCcEEEE
Confidence 78999999999999997663
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-38 Score=255.21 Aligned_cols=277 Identities=22% Similarity=0.341 Sum_probs=244.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
.++...+.||..+|+.+-|+|+- .++++++.|++|++||..+++....+++|...|.+|+|+..|++|++++.|-.+++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 36788899999999999999997 88999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
||..+.. ........+...+.++.+-|.|.++++++. +|..|++.++.++.++.+|...+..+..+.
T Consensus 177 Wd~~~~~-----------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 177 WDFDTFF-----------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred eeHHHHH-----------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 9987531 123334456678889999999999999984 599999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-----------
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT----------- 282 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~----------- 282 (434)
+| .++++++.|.++++|-+.+..+.. .+..|+.+|-+++|-|.
T Consensus 246 DG-ti~As~s~dqtl~vW~~~t~~~k~-------------------------~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 246 DG-TIIASCSNDQTLRVWVVATKQCKA-------------------------ELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred Ce-eEEEecCCCceEEEEEeccchhhh-------------------------hhhccccceEEEEecccccCcchhhccC
Confidence 88 899999999999999998775443 33589999999999874
Q ss_pred ----CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 283 ----GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 283 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
+.++++++.|++|++||+.++.++.++..+. ..|.+++|+|.|+||+++.+|+++++||+++.++..++.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~----- 373 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE----- 373 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEeccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-----
Confidence 3589999999999999999999999887655 899999999999999999999999999999999988775
Q ss_pred hhHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 359 KHAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
+|..-++.+.+|-..|.+
T Consensus 374 ------------ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 374 ------------AHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ------------CCcceeEEEecCCCCceE
Confidence 456667788888777743
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-38 Score=256.82 Aligned_cols=273 Identities=20% Similarity=0.343 Sum_probs=240.5
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeeccCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQG 110 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~ 110 (434)
+||.+...........++.|...++++.+.|+||++.|..++|+..| .+|++++.|-.+.+||..+ .+++..+.+|..
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 45555555555566678899999999999999999999999999999 9999999999999999987 466778889999
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEE
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIW 188 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~ 188 (434)
.|.+++|-|.|.++++++.|.+|+.|++.++-++.. ...+..-+..+..+.||.++++++. .+++|
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t------------~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT------------FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEe------------ccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 999999999999999999999999999998854332 3334457788999999999999985 49999
Q ss_pred eCCCCcceeeeecCCCceEEEEEcCC--------------CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 189 NHNRSQPINSFQWGTDTVISVRFNPA--------------EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~i~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
-..++++...+..|..+|.+++|.|. +..++.+++.|++|++||+.++.++.++
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL------------ 330 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL------------ 330 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE------------
Confidence 99999999999999999999999763 2358999999999999999988766554
Q ss_pred eeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
.+|...|.+++|+|.|+||+++..|+++++||++++++...+.. |..-+++++|+.+..++++|+-
T Consensus 331 -------------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 331 -------------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred -------------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-CcceeEEEecCCCCceEEeccc
Confidence 58999999999999999999999999999999999999988874 4478999999999999999999
Q ss_pred CCcEEEeec
Q 013873 335 DTNLRLWKA 343 (434)
Q Consensus 335 dg~v~vw~~ 343 (434)
|..+++|.-
T Consensus 397 dqt~KvwEc 405 (406)
T KOG0295|consen 397 DQTVKVWEC 405 (406)
T ss_pred cceeeeeec
Confidence 999999963
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-37 Score=256.97 Aligned_cols=245 Identities=21% Similarity=0.442 Sum_probs=210.4
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
+..|++++|+.+| ..||+|+.||.++||+. +|..+.++..|.++|.++.|+..|.||++++.||++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-- 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-- 310 (524)
T ss_pred cCCcceEEecCCC-CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE--
Confidence 4689999999999 99999999999999996 5777888999999999999999999999999999999999977743
Q ss_pred CCCCCCCCCCceeEEEec-CceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 146 SDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
...+... .+-..+.|..+..+..+.. +.|+++-+....|+.++.+|.+.|.++.|+|.+ .+|++++
T Consensus 311 -----------~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~S 378 (524)
T KOG0273|consen 311 -----------KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCS 378 (524)
T ss_pred -----------EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEec
Confidence 2222222 2335566665554444433 569999999999999999999999999999998 8999999
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC---------CEEEEEeCCCc
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---------REFVTGSYDRT 294 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~d~~ 294 (434)
.|++++||..........+ .+|...|..+.|+|.| ..+++++.|++
T Consensus 379 dD~TlkiWs~~~~~~~~~l-------------------------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSNSVHDL-------------------------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred CCCeeEeeecCCCcchhhh-------------------------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 9999999998766554433 4799999999999964 47999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
|++||+..+.++..+..|. .+|.+++|+|+|+++|+|+.||.|.+|+..+++.++..
T Consensus 434 V~lwdv~~gv~i~~f~kH~-~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQ-EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EEEEEccCCceeEeeccCC-CceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 9999999999999986655 89999999999999999999999999999999988665
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.8e-39 Score=264.07 Aligned_cols=273 Identities=20% Similarity=0.324 Sum_probs=233.6
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccC-C
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-G 110 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~ 110 (434)
..|..+.+-....-.+..+|+-..-.|-..++.|.+.|.++.|++++ .++++|+.+|.|++|+..- ..++.+..|. .
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~e 181 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM-NNVKIIQAHHAE 181 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch-hhhHHhhHhhhh
Confidence 33444444444455566788888888888889999999999999999 9999999999999999754 4445555554 9
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEE
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIW 188 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~ 188 (434)
.|++++|+|+...|++|+.||+|+|||....+ ....+..+.-.+.+++|+|...++++++.+ |.+|
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~k------------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCc------------hhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 99999999999999999999999999987653 233345566789999999999999999854 9999
Q ss_pred eCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
|.+++.++.++..|...|..+.|+|++ ++|++++.|..+++||+++.+... .+.
T Consensus 250 DprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~-------------------------~~r 303 (464)
T KOG0284|consen 250 DPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELF-------------------------TYR 303 (464)
T ss_pred cCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHH-------------------------Hhh
Confidence 999999999999999999999999999 899999999999999999655444 335
Q ss_pred CcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 269 GHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 269 ~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+|...+++++|+| ...+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8999999999999 567899999999999999987777777777788999999999999999999999999999753
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-35 Score=240.94 Aligned_cols=271 Identities=16% Similarity=0.220 Sum_probs=234.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
-.-+.+|..|++.|.+++.+|+. ++++||+.|..-.||++.++.....+.+|...|+++.|+.+|.+||||+.+|.|+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 34567899999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
|...++... ......-..+.=+.|+|.+.++++++ |.+-.|.+.++...+.+.+|..++++=.|.|
T Consensus 133 ~~~stg~~~------------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 133 FKVSTGGEQ------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEcccCceE------------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence 999887432 22222344566688999999999887 6699999999888899999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEee------------------------------------------------
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMR------------------------------------------------ 245 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------------------------ 245 (434)
+| ..++++..||+|++|++.++.+...+...
T Consensus 201 dG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 201 DG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 98 78899999999999999998777665411
Q ss_pred ------------------------ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 246 ------------------------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 246 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
+..++.+.+||...... ...-.|..+|+.+.|-+ ..+|++++.+|.|+.||.+
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence 66777777777654322 22336889999999998 7899999999999999999
Q ss_pred CCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 302 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+|++...+..|. ..|.+++++|+.+++++++.|+..+||++.
T Consensus 357 tG~l~~~y~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 357 TGQLKFTYTGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccceEEEEecCc-hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999987665 889999999999999999999999999864
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.4e-38 Score=258.28 Aligned_cols=268 Identities=20% Similarity=0.347 Sum_probs=231.2
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
..-...|..+.|.|+| ..|++|+..|.+.+|+..+......++.|..+|.++.|++++.++++|+.+|.|++|+..-..
T Consensus 93 NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 3445689999999999 999999999999999986655555678899999999999999999999999999999976442
Q ss_pred CCCCCCCCCCCCCceeEEEe-cCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
......+ ...|.+++|+|+...|++++ +.|+|||....+....+.+|.-.|.+++|+|.. .++
T Consensus 172 -------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLi 237 (464)
T KOG0284|consen 172 -------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLI 237 (464)
T ss_pred -------------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-cee
Confidence 2222233 37899999999888888876 569999999999999999999999999999987 799
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
++|+.|..|++||.+++.++.++ .+|...|..+.|+|++++|+++|.|..+++||
T Consensus 238 asgskDnlVKlWDprSg~cl~tl-------------------------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATL-------------------------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred EEccCCceeEeecCCCcchhhhh-------------------------hhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence 99999999999999999877655 48999999999999999999999999999999
Q ss_pred CCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhh
Q 013873 300 YNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKR 378 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 378 (434)
+++.+.+..+..+. ..|+++.|+| ...+|.+|+.||.|..|.+...+.+..+.. +|...|.+
T Consensus 293 iR~mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~----------------AHd~~iws 355 (464)
T KOG0284|consen 293 IRTMKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP----------------AHDGEIWS 355 (464)
T ss_pred hhHhHHHHHhhcch-hhheeeccccccccceeeccCCCceEEEeccccccccCCCc----------------ccccceee
Confidence 99777766665554 7899999999 677899999999999999986666666653 78889999
Q ss_pred hhhccCCCh
Q 013873 379 IVRHRHLPK 387 (434)
Q Consensus 379 ~~~~~~~~~ 387 (434)
++|||.-..
T Consensus 356 l~~hPlGhi 364 (464)
T KOG0284|consen 356 LAYHPLGHI 364 (464)
T ss_pred eecccccee
Confidence 999987653
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=244.12 Aligned_cols=254 Identities=22% Similarity=0.388 Sum_probs=225.7
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.+.+.++||.+.|.|+++.|.+ .+|++|+.|++|+|||+.++++..++.+|-..|..+++++--.||++++.|+.|+-|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 3678899999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
|++..+.+ .....+-+.+.+++.+|.-..+++++. .+++||+++...+..+.+|...|.++.+.|.
T Consensus 221 DLe~nkvI------------R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 221 DLEYNKVI------------RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred echhhhhH------------HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 99887543 334556788999999999999999985 4999999999999999999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
++ .+++|+.|++|++||++.+.....+ ..|...|.+++.+|....||+++.|.
T Consensus 289 dp-qvit~S~D~tvrlWDl~agkt~~tl-------------------------t~hkksvral~lhP~e~~fASas~dn- 341 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAGKTMITL-------------------------THHKKSVRALCLHPKENLFASASPDN- 341 (460)
T ss_pred CC-ceEEecCCceEEEeeeccCceeEee-------------------------ecccceeeEEecCCchhhhhccCCcc-
Confidence 84 6789999999999999987655443 47899999999999999999999776
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
|+-|++..+..+..+.. |..-|++++...|+ ++++|+++|.+.+||.+++-..+.+
T Consensus 342 ik~w~~p~g~f~~nlsg-h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSG-HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ceeccCCccchhhcccc-ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 89999999988777544 44789999998776 6888999999999999998766544
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-36 Score=231.36 Aligned_cols=277 Identities=19% Similarity=0.320 Sum_probs=237.2
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
-...|..|.++|.++.|+-+| ++.++++.|.+|++|+...+.+++++.+|...|..++.+.|...|++|+.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 456789999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCC--CcceeeeecCCCceEEEEEcC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR--SQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~ 213 (434)
+++++.. ...-.|...+..+.|+.+...+++++ ..+++||.++ .+|++.+....+.|.++....
T Consensus 88 V~TGkv~------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 88 VNTGKVD------------RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred cccCeee------------eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 9999643 33445567889999999999999987 5699999876 478888888889999999874
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
+.+++|+.||+++.||++.+...... -..+|+++.|+++++..+.++.|+
T Consensus 156 ---heIvaGS~DGtvRtydiR~G~l~sDy---------------------------~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 156 ---HEIVAGSVDGTVRTYDIRKGTLSSDY---------------------------FGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred ---cEEEeeccCCcEEEEEeecceeehhh---------------------------cCCcceeEEecCCCCEEEEeeccc
Confidence 67999999999999999987654332 356899999999999999999999
Q ss_pred cEEEEeCCCCeeeeEEeccCC-ccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhcc
Q 013873 294 TIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKH 372 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
++++.|-.+|+++..+..+.. .--...+++.....+++|+.||.|++||+....++..+.. ..
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~----------------~~ 269 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV----------------VS 269 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc----------------CC
Confidence 999999999999988866542 2345677888888999999999999999999888876642 12
Q ss_pred chhhhhhhhccCCChHHHHHH
Q 013873 373 LPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 373 ~~~v~~~~~~~~~~~~~~~~~ 393 (434)
...+..+++||..+..+..++
T Consensus 270 ~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 270 TVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred ceeEEeeecccCccceeEecC
Confidence 223688999999998765544
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-34 Score=227.74 Aligned_cols=286 Identities=22% Similarity=0.313 Sum_probs=227.7
Q ss_pred cccccccCCCCCeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCC---ceeEEe-eccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 57 PFIGALDGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANR---RTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
..++.+++|.+.|..++|+|. | .+||+|+.|..|++|+...+ .+...+ .+|+..|.+++|+|.|++|++++.|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 346788999999999999998 6 79999999999999998853 233333 47999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCC---cceeeeecCCCce
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRS---QPINSFQWGTDTV 206 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~---~~~~~~~~~~~~i 206 (434)
++.||.-..+.+ .....+-.|.+.+.+++|+++|.+||+++. .|-||..... .++..++.|...|
T Consensus 84 t~~Iw~k~~~ef----------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 84 TVVIWKKEDGEF----------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eEEEeecCCCce----------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999999776654 233444567789999999999999999985 4888987744 5678889999999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
..+.|+|.. .+|++++.|.+|++|+-... ......+.+.+|.+.|.+++|+|.|..|
T Consensus 154 K~V~WHPt~-dlL~S~SYDnTIk~~~~~~d----------------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 154 KHVIWHPTE-DLLFSCSYDNTIKVYRDEDD----------------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred cEEEEcCCc-ceeEEeccCCeEEEEeecCC----------------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 999999987 79999999999999986531 1223445667999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHH
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV 366 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
++++.|++|+||-+.+ .+...|...+..+.|. ...|++++.|+.|++|.-..+-.-. .+.-..
T Consensus 211 ~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p----------~~~l~~ 273 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEP----------SWNLLA 273 (312)
T ss_pred EEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCc----------hHHHHH
Confidence 9999999999998652 2334445789999998 4479999999999999876321111 122223
Q ss_pred HHhhccchhhhhhhhccCCChHHHHHH
Q 013873 367 KNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
.....|..+|+.+.|.|..+..+.+.+
T Consensus 274 ~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 274 KKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred hhhcccccccceEEEcCCCCCceeecC
Confidence 344578889999999997666554444
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-35 Score=263.37 Aligned_cols=216 Identities=19% Similarity=0.350 Sum_probs=194.7
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
..+.+.......+++-||+++|..+.|+|+. ++|++++.|++|++|.+.+...+..+++|..+|+++.|+|.|-||||+
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec
Confidence 3444445566677799999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCc
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDT 205 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~ 205 (434)
+.|++.++|...... .......+.+.+.|+.|+|+..++++++. ++++||..++..+..|.+|.++
T Consensus 512 s~D~tArLWs~d~~~------------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNK------------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred CCCceeeeeecccCC------------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 999999999987652 33344556778899999999999999985 4999999999999999999999
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
|++++|+|+| .+|++|+.||.|.+||+..+.....+ .+|.+.|.++.||.+|..
T Consensus 580 V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l-------------------------~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 580 VTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQL-------------------------KGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred eEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhh-------------------------hcccCceeEEEEecCCCE
Confidence 9999999998 89999999999999999988776644 489999999999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 013873 286 FVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~ 302 (434)
||+||.|++|++||+..
T Consensus 634 Lasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 634 LASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCCeEEEEEchh
Confidence 99999999999999863
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=258.72 Aligned_cols=328 Identities=23% Similarity=0.316 Sum_probs=259.2
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhccccccccccC-CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccC
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ 109 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 109 (434)
.+.|.+..+-....-...++|.+.++.+++.+.. |+.+|.-++|+|.+ .+|++|+.||.++|||+..+.+++.|++|.
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~g 147 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHG 147 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCC
Confidence 3555555554444455678889999999999998 99999999999999 999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCC--eEEEeeCCCcEEEeeCCCCCC-C------------------------------------------
Q 013873 110 GAVRGLTVSTDGR--ILVSCGTDCTVKLWNVPVATL-T------------------------------------------ 144 (434)
Q Consensus 110 ~~v~~i~~~~~~~--~l~s~~~dg~v~iwd~~~~~~-~------------------------------------------ 144 (434)
+.|.++.|+|+.. .|++|+.|+++++||+..... .
T Consensus 148 GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 148 GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 9999999988654 578888888889988753322 0
Q ss_pred ---------------CC-------------------------------CCCCC---------------------------
Q 013873 145 ---------------DS-------------------------------DDSTD--------------------------- 151 (434)
Q Consensus 145 ---------------~~-------------------------------~~~~~--------------------------- 151 (434)
.. .....
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence 00 00000
Q ss_pred ----------------------------------------------CCCCceeEEEecCceEEEeeccCCCEEEEeCC--
Q 013873 152 ----------------------------------------------NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-- 183 (434)
Q Consensus 152 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (434)
....+.....|...+.+++...+|.++++++.
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc
Confidence 00000011112223344454456667788774
Q ss_pred eEEEEeCCCC----cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC-----------------------
Q 013873 184 QVDIWNHNRS----QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS----------------------- 236 (434)
Q Consensus 184 ~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------- 236 (434)
.+++|.++.+ -++....+|.+.|.+++++..+..+|++++.|+++++|++...
T Consensus 388 svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 4999977443 3456667899999999999888899999999999999999872
Q ss_pred ----CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc
Q 013873 237 ----SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 237 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
.+...++..++.+.+..+|+.. ......++.+|...|.++.|+|..+.++|+|.|++|+||.+.+..++.++.+|
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH 546 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH 546 (775)
T ss_pred ceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc
Confidence 2233456668899999999988 56677788999999999999999999999999999999999999999999766
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhH
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHA 361 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 361 (434)
. ..|..+.|-.+|+.|++++.||-|++|++.+++++.++..+..+...
T Consensus 547 ~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWa 594 (775)
T KOG0319|consen 547 T-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWA 594 (775)
T ss_pred c-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEE
Confidence 5 88999999999999999999999999999999999999877666554
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=264.12 Aligned_cols=279 Identities=23% Similarity=0.439 Sum_probs=235.6
Q ss_pred cccccCC-CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 59 IGALDGH-RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 59 ~~~l~~h-~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
...+.+| ...|.|+.|+++| ..|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 4455454 8999999999999 889999999999999997777 77778899999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
||+.... ........|...+++++|+|+++++++++ +.|+|||+++++++..+..|.+.|++++|++
T Consensus 230 wd~~~~~-----------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 230 WDLKDDG-----------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eeccCCC-----------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 9994331 13344457788999999999999999887 4599999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcc--eEEEeeecCceeEEEeeCCCCccceeeeeCccc--CeEEEEEccCCCEEEEE
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPA--RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES--AVMDIDYSPTGREFVTG 289 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~ 289 (434)
++ ++|++++.||.|++||+.++... ..+ .++.. +++++.|+|++.+++++
T Consensus 299 d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 299 DG-NLLVSASYDGTIRVWDLETGSKLCLKLL-------------------------SGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred CC-CEEEEcCCCccEEEEECCCCceeeeecc-------------------------cCCCCCCceeEEEECCCCcEEEEe
Confidence 98 89999999999999999987632 221 23333 59999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeccCCc--cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHH
Q 013873 290 SYDRTIRIFQYNGGRSREIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVK 367 (434)
Q Consensus 290 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
+.|+.+++||+..+.....+..+... .+.+...++.+.++++|+.|+.|++|++.++..+..+.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------------- 418 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------------- 418 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc--------------
Confidence 99999999999999988888777654 45556668899999999999999999999987776554
Q ss_pred Hhhcc-chhhhhhhhccCCChHHHHH
Q 013873 368 NRYKH-LPEIKRIVRHRHLPKPIYKA 392 (434)
Q Consensus 368 ~~~~~-~~~v~~~~~~~~~~~~~~~~ 392 (434)
+| ...+..+.+||..+..+..+
T Consensus 419 ---~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 419 ---GHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ---CCCCCceeccccCCCcCeeeecC
Confidence 44 66677888888877655443
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=221.45 Aligned_cols=239 Identities=20% Similarity=0.379 Sum_probs=200.0
Q ss_pred HHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 45 LTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
...++++++.+.. .+.++.+|++.|+++.|..+| ..+++|+.||+++|||++.....+.++ |.++|+++..+|+..
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT 137 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc
Confidence 3446666665432 688999999999999999999 999999999999999999977666665 789999999999999
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC------c
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS------Q 194 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~------~ 194 (434)
.|++|..+|.|++||+....+..... ......+.++...|+|.+++++. |..++|++-.. +
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~li-----------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELI-----------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccC-----------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 99999999999999998764432211 12235778999999999999887 67999998654 4
Q ss_pred ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 195 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
++.+++.|.+.+..+.++|++ .+|++++.|.+++||+.... .. ....+.+|...+
T Consensus 207 P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~k-----------------------le~~l~gh~rWv 261 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FK-----------------------LELVLTGHQRWV 261 (311)
T ss_pred EhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-ee-----------------------eEEEeecCCceE
Confidence 677888999999999999998 89999999999999998765 11 112446899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEE
Q 013873 275 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
.+++||.||.||++|+.|+.+++||+..++....+..++ ....|++.
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~-K~~vc~~l 308 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH-KAAVCVAL 308 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCcc-cccEEEEe
Confidence 999999999999999999999999999999988888877 44455554
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.4e-33 Score=244.62 Aligned_cols=272 Identities=26% Similarity=0.487 Sum_probs=229.8
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
+.++.+|.+.|++++|+|++ .+|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 45788999999999999998 89999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
..+. .......+...+.++.+++++.++++++ +.+.+||+.+++....+..|...+.+++|+|++
T Consensus 81 ~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 147 (289)
T cd00200 81 ETGE------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG- 147 (289)
T ss_pred Cccc------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-
Confidence 8652 2222334455889999999988888775 679999999988888888888899999999986
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
.++++++.||.|++||++.......+ ..|...+.+++|+|+++.+++++.|+.|+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATL-------------------------TGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeE-------------------------ecCccccceEEECCCcCEEEEecCCCcEE
Confidence 78888877999999999866554433 36778999999999999999999999999
Q ss_pred EEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhh
Q 013873 297 IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEI 376 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 376 (434)
+||+..++....+..+ ...+.+++|+|++.++++++.||.|++|++.+++.+..+. .|...+
T Consensus 203 i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-----------------~~~~~i 264 (289)
T cd00200 203 LWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-----------------GHTNSV 264 (289)
T ss_pred EEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-----------------ccCCcE
Confidence 9999988777666433 3689999999999999988889999999999877766553 345567
Q ss_pred hhhhhccCCCh
Q 013873 377 KRIVRHRHLPK 387 (434)
Q Consensus 377 ~~~~~~~~~~~ 387 (434)
..++++|..+.
T Consensus 265 ~~~~~~~~~~~ 275 (289)
T cd00200 265 TSLAWSPDGKR 275 (289)
T ss_pred EEEEECCCCCE
Confidence 78888876443
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-34 Score=240.30 Aligned_cols=265 Identities=18% Similarity=0.330 Sum_probs=233.2
Q ss_pred hhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEE
Q 013873 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 117 (434)
.+++.......++|+. ++.++.+|..|.++|.++.|+..| ++|++++.||++.+||..++...+.+.-|..+-..+.|
T Consensus 249 ~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 3444444555667765 567888999999999999999999 99999999999999999999999999999988788999
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP 195 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~ 195 (434)
-.+ .-|++++.||.|+++.+... .....+..|++.|.++.|.|.+.+|++++ ++++||.......
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~------------~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGED------------RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCC------------CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 765 46899999999999999765 34455566889999999999999999987 5699999999999
Q ss_pred eeeeecCCCceEEEEEcCCCC--------cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 196 INSFQWGTDTVISVRFNPAEP--------NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
...+..|...|..+.|+|.++ ..+++++.|++|++||+..+.++..+
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f------------------------- 448 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL------------------------- 448 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-------------------------
Confidence 999999999999999998763 57899999999999999988777654
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
..|..+|++++|+|+|+++|+|+.||.|.+|+.++++....+... +.|..++|+.+|.+|..+-.||.+++-|++
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 489999999999999999999999999999999999998887655 679999999999999999999999999875
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-34 Score=249.61 Aligned_cols=257 Identities=20% Similarity=0.381 Sum_probs=231.8
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
+-+++..|++.|.++.|+|.. ..++++-.+|.|.|||.++...+..+.-..-+|.+..|.+-.+++++|+.|..|++|+
T Consensus 5 ~krk~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhHhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 345667799999999999998 8899999999999999999999999998899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCC-cceeeeecCCCceEEEEEcCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRS-QPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~ 214 (434)
+++. .+...+..|..-+.+++.+|...++++++.+ |++||.+.. .+.+++.+|...|.+++|+|.
T Consensus 84 ynt~------------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 84 YNTG------------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred cccc------------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence 9988 3556666777889999999999999998865 999999765 678899999999999999999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC--CEEEEEeCC
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG--REFVTGSYD 292 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d 292 (434)
+++.|++++.|++|++|.+....+..++ .+|...|+|+.|-+-| .+|++|+.|
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~~~nfTl-------------------------~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSPHPNFTL-------------------------EGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred CccceeeeeccccEEEEEcCCCCCceee-------------------------eccccCcceEEeccCCCcceEEecCCC
Confidence 9999999999999999999877666544 5999999999998855 589999999
Q ss_pred CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.+|+|||.++..++.++.+|. ..|..+.|+|.-..+++|+.||+++||+..+.++..++.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred ceEEEeecchHHHHHHhhccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 999999999999999887655 789999999999999999999999999999988776664
No 32
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=223.89 Aligned_cols=275 Identities=18% Similarity=0.292 Sum_probs=233.9
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE--eeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEe
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSGHQGAVRGLTVST-DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iw 136 (434)
+.+++|...|.+++|+-+| ..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| ....|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 6788999999999999999 9999999999999999988765544 468999999999998 56689999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
|++.+ ++.........-.-+.|+|+|.+++.++. .|.+.|.++.+.....+. .-.+..++|+.+
T Consensus 93 d~r~~-------------k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 93 DIRSG-------------KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNS 158 (313)
T ss_pred EeccC-------------cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCC
Confidence 99877 44555555555667899999999999985 499999998887766654 455778899866
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
+ ++|+.....|.|.|......++...+ .+|.....|+.|+|+|++||+|+.|..
T Consensus 159 n-d~Fflt~GlG~v~ILsypsLkpv~si-------------------------~AH~snCicI~f~p~GryfA~GsADAl 212 (313)
T KOG1407|consen 159 N-DLFFLTNGLGCVEILSYPSLKPVQSI-------------------------KAHPSNCICIEFDPDGRYFATGSADAL 212 (313)
T ss_pred C-CEEEEecCCceEEEEecccccccccc-------------------------ccCCcceEEEEECCCCceEeeccccce
Confidence 5 67777777899999998877666654 489999999999999999999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccch
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLP 374 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (434)
+.+||++..-+...+.... -+|..+.||.||++||+|+.|..|-|=++++|..+..+ .+..
T Consensus 213 vSLWD~~ELiC~R~isRld-wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI------------------~~~~ 273 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLD-WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI------------------PCEG 273 (313)
T ss_pred eeccChhHhhhheeecccc-CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe------------------eccC
Confidence 9999999887777775444 78999999999999999999999999999999988666 5677
Q ss_pred hhhhhhhccCCChHHHHHHH
Q 013873 375 EIKRIVRHRHLPKPIYKAAS 394 (434)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~~ 394 (434)
+...++|||..|.+.+...+
T Consensus 274 ~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CceeEEecCCCceeeEEecC
Confidence 88899999999988876653
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-33 Score=217.50 Aligned_cols=283 Identities=22% Similarity=0.327 Sum_probs=237.0
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
.|+||..+++.+.|+.+| .+|++++.|.+..||-..+|+.+.++.+|++.|+|+..+.+.+++++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 478999999999999999 9999999999999999989999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCC-------CCcceeeeecCCCce
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHN-------RSQPINSFQWGTDTV 206 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~-------~~~~~~~~~~~~~~i 206 (434)
+ +.+.......++..+.|+.+|++++... +.|.++|++ ...+...+..+.+.+
T Consensus 84 G-------------k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 84 G-------------KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred C-------------cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 8 5666777788999999999999887764 249999988 456788888889999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
+.+-|.|.+ ..+++|..||.|.+||++++..... ....|...|+.+.++||..++
T Consensus 151 t~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~------------------------s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 151 TSALWGPLG-ETIIAGHEDGSISIYDARTGKELVD------------------------SDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred eeeeecccC-CEEEEecCCCcEEEEEcccCceeee------------------------chhhhccccccccccCCcceE
Confidence 999999988 7899999999999999998643321 223688899999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHH
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV 366 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
++++.|.+-++||..+-..+..+... .+|++.+++|....++.|+.....-| ..+......|+.+....+ +.|-+
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~te--~PvN~aaisP~~d~VilgGGqeA~dV--TTT~~r~GKFEArFyh~i-~eEEi 280 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYTTE--RPVNTAAISPLLDHVILGGGQEAMDV--TTTSTRAGKFEARFYHLI-FEEEI 280 (327)
T ss_pred EecccCccceeeeccceeeEEEeeec--ccccceecccccceEEecCCceeeee--eeecccccchhhhHHHHH-HHHHh
Confidence 99999999999999999999998776 68999999997777777654332222 122333444555544444 44455
Q ss_pred HHhhccchhhhhhhhccCCCh
Q 013873 367 KNRYKHLPEIKRIVRHRHLPK 387 (434)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~ 387 (434)
....+|.++|+.+++||.-..
T Consensus 281 grvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred ccccccccCcceeEECCCCcc
Confidence 566789999999999998663
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=236.47 Aligned_cols=283 Identities=18% Similarity=0.265 Sum_probs=231.1
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcE
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTV 133 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v 133 (434)
.-.+.|..|++.|.-+.||++| .+||+++.|.+..+|++.... ..+++.+|..+|..+.|+||.++|++|+.|..+
T Consensus 215 qt~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 3456788999999999999999 999999999999999876543 477889999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC-CCceEEEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG-TDTVISVR 210 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~-~~~i~~i~ 210 (434)
.+||+.++......... +...+.+++|.|||..+++|+ +.+..||++... +...++. ...|.+++
T Consensus 294 ~lwDv~tgd~~~~y~~~-----------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG-----------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLA 361 (519)
T ss_pred eeccCCcchhhhhcccC-----------cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEE
Confidence 99999998654332211 246778999999999999998 459999986543 3333332 35689999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
..++| ..+++.+.|..|++|+.........+ ....+|+++.+|.||+++++.-
T Consensus 362 it~Dg-k~vl~v~~d~~i~l~~~e~~~dr~li--------------------------se~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 362 ITYDG-KYVLLVTVDKKIRLYNREARVDRGLI--------------------------SEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EcCCC-cEEEEEecccceeeechhhhhhhccc--------------------------cccCceeEEEEcCCCcEEEEEc
Confidence 99999 56667779999999998765433221 3467899999999999999999
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCc-cEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHH
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQ-RVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKN 368 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
.+..|.+||++..+.+..+.++..+ -+-.-+|-- +..++++|+.|+.|+||+..+++++.++.
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--------------- 479 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS--------------- 479 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---------------
Confidence 9999999999988777766555422 244455644 66899999999999999999999999886
Q ss_pred hhccchhhhhhhhccCCChHHHHHHHHH
Q 013873 369 RYKHLPEIKRIVRHRHLPKPIYKAASLR 396 (434)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 396 (434)
+|...|++++|.|..|.++.+++++.
T Consensus 480 --GHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 480 --GHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred --CCcceeeEEecCCCCHHHhhccCCCC
Confidence 68899999999999999998888654
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=259.39 Aligned_cols=275 Identities=23% Similarity=0.406 Sum_probs=234.6
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeC-CCCceeEEeec
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI-ANRRTVCQYSG 107 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~ 107 (434)
.+++.++..+.......+++|.....+ +.+.+.+|...|++++|+|++ .++++|+.|++|+|||+ ..+..++++.+
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 356677777777777788888887777 888889999999999999999 89999999999999999 55688999999
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
|...|++++|+|+++++++|+.|++|+|||+.++. .......+...+.++++++++.++++++ +.|
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 99999999999999999999999999999998863 3444556677999999999999999987 569
Q ss_pred EEEeCCCCc--ceeeeecCCCc--eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 186 DIWNHNRSQ--PINSFQWGTDT--VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 186 ~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
++||+.++. +...+..+... +.++.|+|++ .++++++.|+.+++||++.......+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~------------------ 373 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYT------------------ 373 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeec------------------
Confidence 999999998 55666665554 9999999998 799999999999999999877666542
Q ss_pred cceeeeeCccc---CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee--CCC
Q 013873 262 EAKCVHMGHES---AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDT 336 (434)
Q Consensus 262 ~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg 336 (434)
+|.. .+.+...++.+.++++|+.|+.|.+||+.++..+..+..+....+..+.|+|...++++++ .|+
T Consensus 374 -------~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 374 -------GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred -------ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 4444 3445556789999999999999999999998777777665357899999999999999988 789
Q ss_pred cEEEeecC
Q 013873 337 NLRLWKAK 344 (434)
Q Consensus 337 ~v~vw~~~ 344 (434)
.+++|...
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 99999864
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=244.79 Aligned_cols=278 Identities=19% Similarity=0.323 Sum_probs=235.6
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC-CcEEEeeCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-CTVKLWNVPV 140 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-g~v~iwd~~~ 140 (434)
|......|+|.+|++.. .+|++|-..|...+|++.....++.+.-...+|..++|+..|.+|+.|+.. |.+-||+..+
T Consensus 261 ln~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ecccccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 44455899999999987 999999999999999999999999998778899999999999999988764 8999999977
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 218 (434)
.. -......|...+.+++++|||.++++|+ |.|+|||..++-++.+|..|...|+.+.|+..+ +.
T Consensus 340 Es------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~ 406 (893)
T KOG0291|consen 340 ES------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NV 406 (893)
T ss_pred cc------------eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CE
Confidence 63 3344445667899999999999999997 569999999999999999999999999999988 89
Q ss_pred EEEEecCCcEEEEEccCCCcceEEEe--------------------eecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 219 LATTASDRSITLYDLRMSSPARKVIM--------------------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
+++.+.||+|+.||+......+++.. .+.....+++|+... ++...++.||++||.+++
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeE
Confidence 99999999999999876544443322 133445777787754 466677889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCe-eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhh
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGR-SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
|+|+|..|+++++|.+|++||+-... ....+... ..+..++|+|||+-|++++.||.|.+||+..+.++..+.++.
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~--sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR--SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred EccccCeEEeccccceEEEEEeeccCceeeeEeec--cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 99999999999999999999986542 33334333 579999999999999999999999999999999998887654
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.3e-35 Score=237.20 Aligned_cols=257 Identities=20% Similarity=0.388 Sum_probs=213.7
Q ss_pred HHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
.+.+++|+..+..++..|.||++.|.|+.|.. ..+++|+.|.+|+|||+++++++.++-+|...|..+.|+. .++
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~m 290 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYM 290 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEE
Confidence 45688999999999999999999999999975 6899999999999999999999999999999999999974 499
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~ 202 (434)
++++.|.++.+||+....-. .-......+...+..+.++.. ++++++| +|++|++.+++.+.++.+|
T Consensus 291 vtcSkDrsiaVWdm~sps~i---------t~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEecCCceeEEEeccCchHH---------HHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcc
Confidence 99999999999999765311 011122345567777777655 6666654 6999999999999999999
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
...|.|+.+. + .++++|++|.+|++||+..+...+. +.||+.-|.++.| |
T Consensus 360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRv-------------------------LeGHEeLvRciRF--d 409 (499)
T KOG0281|consen 360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRV-------------------------LEGHEELVRCIRF--D 409 (499)
T ss_pred cccceehhcc--C-eEEEecCCCceEEEEeccccHHHHH-------------------------HhchHHhhhheee--c
Confidence 9999999886 3 8999999999999999998876654 4699999999999 6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEE--------eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIY--------HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
.+.+++|+.||+|++||+..+...... ...|.+.|..+.| |...+++++.|.+|.|||+..+-.-
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 789999999999999999876432111 2334578999999 5667999999999999999877543
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-32 Score=231.78 Aligned_cols=242 Identities=17% Similarity=0.332 Sum_probs=187.8
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce--eEEeeccCCCeeEEEEcCCCCeEEEeeCC----C
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCGTD----C 131 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g 131 (434)
.+..+.+|...++-..|+|.| .++|+|...|+|+|||...... ..+++.-.++|..|+|+.++++|++.|.. |
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 356678999999999999999 8999999999999999865432 23466677889999999998888877653 5
Q ss_pred cEEEeeCCCCC--CCCC--------------CCCC-CCC--------CCce----eEEEecCceEEEeeccCCCEEEEeC
Q 013873 132 TVKLWNVPVAT--LTDS--------------DDST-DNS--------SEPL----AVYVWKNSFWAVDHQWEGDLFATAG 182 (434)
Q Consensus 132 ~v~iwd~~~~~--~~~~--------------~~~~-~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
.+.+||.-+.. +... +... ... ..+. ....|..-+.++.++|||..+++.+
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 67788863321 1100 0000 000 0111 1122445689999999999999987
Q ss_pred --CeEEEEeCCCCcceeeee---cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee------------
Q 013873 183 --AQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR------------ 245 (434)
Q Consensus 183 --~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------ 245 (434)
+.+.+||-.+++.+..+. .|.+.|.+++|+|++ ..|++++.|.+++|||+.+.+...++...
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 569999999999999888 799999999999999 78899999999999999988776665433
Q ss_pred -------ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 246 -------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 246 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
.+..+.+-.++..... +..+..+|...|+++..+|++++|++|+.||.|.-||..+
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 4455566666666665 7778889999999999999999999999999999999764
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=220.83 Aligned_cols=274 Identities=20% Similarity=0.342 Sum_probs=225.6
Q ss_pred CCChhhhhhhHHHHHHHHhhhhcc-ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFA-RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (434)
++|.....+......++-+|+++. -+-...++||+++|..+.|.+|+ +.+++++.|.+|+.||.++|+.++.+++|..
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~ 133 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKRIRKHKGHTS 133 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccceeeehhccccc
Confidence 555444444455555677888654 23456788999999999999999 9999999999999999999999999999999
Q ss_pred CeeEEEEcCCC-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEE
Q 013873 111 AVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 111 ~v~~i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
-|+++.-+.-| .++.+++.||++++||+++.. ++........++++.|..++..+.+++ +.|.+
T Consensus 134 ~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-------------~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 134 FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-------------AIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred eeeecCccccCCeEEEecCCCceEEEEeecccc-------------hhhccccceeEEEEEecccccceeeccccCceee
Confidence 99999855444 467788999999999998763 344444456778899999998888887 67999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
||++.+.....+.+|.+.|+.+..+|.| ..+.+-+.|.++++||++...+....+ .++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v---------------------~if 258 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCV---------------------KIF 258 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceE---------------------EEe
Confidence 9999999999999999999999999998 788899999999999999887766521 122
Q ss_pred eCc----ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 268 MGH----ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 268 ~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
.+| +.....++|+|++..+..|+.|..+++||..+...+..+.+ |.+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 222 23455689999999999999999999999988777666654 558999999999999999999999998743
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=240.76 Aligned_cols=291 Identities=18% Similarity=0.308 Sum_probs=245.6
Q ss_pred HHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE
Q 013873 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV 125 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 125 (434)
+..++|+.-+..+++++. .+.+.|..|.|.+ .++++|...|.+.+||+.+...+-++++|.+.|++++.+||+..++
T Consensus 394 ~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTIT--CGYILASKFVPGD-RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred CcEEEEEccCcceeEEec--cccEEEEEecCCC-ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 457899998899998887 4499999999988 9999999999999999999999888999999999999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeecCC
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+||.|.+|++||...-.-.......-..............+.++.++|||.+++.+ +.++.+|-+++.+...++-+|.
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk 550 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK 550 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence 99999999999974321110000000111223445567789999999999999988 5789999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
-+|.|+..+|++ .+++||+.|.+|++|-+.-+.+-..+ .+|...|+++.|-|..
T Consensus 551 LPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~-------------------------fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 551 LPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSF-------------------------FAHDDSVMSVQFLPKT 604 (888)
T ss_pred cceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhh-------------------------hcccCceeEEEEcccc
Confidence 999999999998 89999999999999999877666554 3899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHH
Q 013873 284 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
..+++||.|+.|+-||-..-..+..+..|+ ..|+|++.+|+|.++++++.|..|++|.......+-.......++.+|.
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE 683 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYE 683 (888)
T ss_pred eeEEEecCcceEEeechhhhhhheeeccch-heeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHH
Confidence 999999999999999999888888888777 8899999999999999999999999999877655555555555555565
Q ss_pred HHH
Q 013873 364 EAV 366 (434)
Q Consensus 364 ~~~ 366 (434)
+.+
T Consensus 684 ~l~ 686 (888)
T KOG0306|consen 684 TLL 686 (888)
T ss_pred Hhh
Confidence 433
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-33 Score=250.44 Aligned_cols=280 Identities=19% Similarity=0.342 Sum_probs=228.2
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
.|...+..|..++|+|.. .+++++-..|.|++||.+-+.++..|..|.++|..++|+|.+.++++||.|-.|++|++.+
T Consensus 4 kfEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 456668899999999998 8999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 218 (434)
.++. .....|..-+..+.|++...++++++. +|+||++.+.+++..+.+|...|.|..|+|.. .+
T Consensus 83 rrcl------------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-Dl 149 (1202)
T KOG0292|consen 83 RRCL------------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DL 149 (1202)
T ss_pred ceeh------------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ce
Confidence 7543 334456677888999999999998874 59999999999999999999999999999987 79
Q ss_pred EEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe--eC--CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 219 LATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY--DS--RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
++++|.|.+|++||+........-.......-..... |. ...-..+.++.||...|+-++|+|.-.+|++|+.|..
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 9999999999999986432211100000000000000 00 0112345677899999999999999999999999999
Q ss_pred EEEEeCCCCeeeeE-EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 295 IRIFQYNGGRSREI-YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 295 i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
|++|.++..+.-.. ...+|...|+++-|+|...+|++.|.|+.|+|||+...+.++++..
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred eeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 99999876553322 1234558899999999999999999999999999999999988843
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=210.41 Aligned_cols=272 Identities=18% Similarity=0.288 Sum_probs=214.8
Q ss_pred CCCCh-hhhhhhHHHHHHHHhhhhcc---ccccccc-cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeE
Q 013873 31 NLRPQ-EKAVEYVRALTAAKLEKIFA---RPFIGAL-DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVC 103 (434)
Q Consensus 31 ~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~ 103 (434)
..+|. ....+.......+++|+... -.+...| .+|+..|..++|+|.| ++|++|+.|.++.||.-..+ +++.
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEe
Confidence 34444 33344455555667777663 3344444 5899999999999999 89999999999999986654 5678
Q ss_pred EeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-
Q 013873 104 QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (434)
Q Consensus 104 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (434)
.+.+|...|.|++|+++|.+||+|+.|+.|-||.+...... .....+..|...+..+.|+|...+|++++
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf---------ec~aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF---------ECIAVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE---------EEEeeeccccccccEEEEcCCcceeEEecc
Confidence 89999999999999999999999999999999998744321 12223345667888999999999999987
Q ss_pred -CeEEEEeCC---CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 183 -AQVDIWNHN---RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 183 -~~i~i~d~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++|++|.-. ...+..++.+|...|.+++|+|.| ..|++++.|++++||.....-+
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~~-------------------- 229 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDLS-------------------- 229 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCcc--------------------
Confidence 569999765 346789999999999999999998 7899999999999998653211
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe------eeeEEeccCCccEEEEEEcCC-CCEEEE
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR------SREIYHTKRMQRVFCVKFSCD-ASYVIS 331 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~s~~-~~~l~s 331 (434)
..|...++.+.|. ...|++++.|+.|++|.-...- .+......|...|++++|+|. .++|++
T Consensus 230 ---------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 230 ---------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred ---------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceee
Confidence 2478899999997 4589999999999999765421 112223445578999999994 778999
Q ss_pred eeCCCcEEEeecC
Q 013873 332 GSDDTNLRLWKAK 344 (434)
Q Consensus 332 ~~~dg~v~vw~~~ 344 (434)
|+.||.|++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999874
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.2e-32 Score=236.18 Aligned_cols=258 Identities=27% Similarity=0.441 Sum_probs=220.4
Q ss_pred HHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
.+.+.+|+..+......+.+|...+.++.|+|++ .+|++++.||.|++||+.+++....+..|...|.++.|++++.++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence 4556677777776778889999999999999998 899999999999999999988888889999999999999998888
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (434)
++++.||.|.+||+.+... ......+...+.++.+++++.++++++ +.+.+||+..++.+..+..|
T Consensus 109 ~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKC------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEecCCCeEEEEECCCcEE------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 8888899999999975532 112223456789999999988888874 67999999999999899888
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
...+.++.|+|++ ..+++++.||.|++||++.......+ ..|...+.+++|+|+
T Consensus 177 ~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~ 230 (289)
T cd00200 177 TGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTL-------------------------RGHENGVNSVAFSPD 230 (289)
T ss_pred ccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecch-------------------------hhcCCceEEEEEcCC
Confidence 8899999999988 67778888999999999875443322 357779999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+.++++++.||.|++||+.++.....+. .+...+.+++|+|++.+|++++.||.|++|+
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8889888889999999999888777776 4447899999999999999999999999996
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=242.16 Aligned_cols=257 Identities=22% Similarity=0.379 Sum_probs=219.7
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEE
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKL 135 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~i 135 (434)
.+.||++.|.++....+| .+|+||+.|.++++|.++++ .++....+|++.|.+++++..+ .+|++++.|+++++
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 678999999999966676 89999999999999987544 2345567999999999997744 58999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
|++...+.... ............|...|++++.+|+..++++++. +..||++........+.+|...+.|+.|+|
T Consensus 439 W~l~~s~~~~~---~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 439 WDLPKSKETAF---PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred ecCCCcccccc---cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 99976221111 0000111123456789999999999999999984 599999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
.+ ++++|+|.|++|+||.+.+.++..++ .||...|..+.|-.+|+.|++|+.||
T Consensus 516 ~d-q~laT~SgD~TvKIW~is~fSClkT~-------------------------eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 516 ND-QLLATCSGDKTVKIWSISTFSCLKTF-------------------------EGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred cc-ceeEeccCCceEEEEEeccceeeeee-------------------------cCccceeEeeeeeeCCcEEEeccCCC
Confidence 88 89999999999999999998887765 58999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
.|++|++.++.+...+..|. ..|++++.+|.+.++++|+.||.|.+|.=.+.+.
T Consensus 570 liKlWnikt~eC~~tlD~H~-DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 570 LIKLWNIKTNECEMTLDAHN-DRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred cEEEEeccchhhhhhhhhcc-ceeEEEeecCccceeEecCCCeEEEEeecCcHHH
Confidence 99999999999999997766 8999999999999999999999999998665443
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=227.85 Aligned_cols=234 Identities=22% Similarity=0.437 Sum_probs=197.5
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
.....|.|+.+.. ..+++|..|++|+|||.++..+...+.||++.|.|+.|. .+.+++|+.|.+|++||+++++.
T Consensus 195 e~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ccCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 3567899999975 569999999999999999999999999999999999995 55999999999999999999854
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc---eeeeecCCCceEEEEEcCCCCcE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP---INSFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~ 218 (434)
+ ...+.+...+..+.++. .++++++ ..+.+||+..... ...+.+|...|+.+.|+. .+
T Consensus 270 l------------~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---ky 332 (499)
T KOG0281|consen 270 L------------NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KY 332 (499)
T ss_pred h------------hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ce
Confidence 3 23344555666666654 3555555 5699999987653 356778999999999985 69
Q ss_pred EEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 219 LATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
+++++.|.+|++|++.+...++.+ .+|...|.|+.+ .|+++++|+.|.+|++|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl-------------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTL-------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred EEEecCCceEEEEeccceeeehhh-------------------------hcccccceehhc--cCeEEEecCCCceEEEE
Confidence 999999999999999988777655 489999999988 78999999999999999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
|+..|.++..+.+|. .-|.++.| |.+.+++|+.||.|+|||+..+..-
T Consensus 386 di~~G~cLRvLeGHE-eLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 386 DIECGACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred eccccHHHHHHhchH-Hhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 999999998887665 77999999 5678999999999999999887543
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=213.52 Aligned_cols=243 Identities=23% Similarity=0.332 Sum_probs=203.1
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
-.+.+..++|++...+.+++++.||+++|||+.. ..++..++.|...|.++.|++ .+..+++++.||+|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999999889999999999999999643 357888999999999999998 56678888999999999987663
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
.......+...|+...|+|. .+++++++ +.+++||++.......+..|...|.|+.|+.-..+++
T Consensus 139 ------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 ------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 33334456678889999984 56777665 4599999987666666999999999999999888999
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iw 298 (434)
+||+.|+.|+.||++.... ++..+.+|.-.|..++|||. ...|++++.|-+++||
T Consensus 207 ~Tg~vd~~vr~wDir~~r~------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRT------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred EecCCCceEEEEehhhccc------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 9999999999999986542 23345689999999999995 4689999999999999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeec
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~ 343 (434)
|...+........+|..-+..+.|++ ++.++|+.+-|+.++||+.
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99866555444556768899999998 7789999999999999984
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-33 Score=214.32 Aligned_cols=272 Identities=23% Similarity=0.382 Sum_probs=235.2
Q ss_pred cccCCCCCeEEEEeCC---CCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 61 ALDGHRDGISCMAKNP---NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~---~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
+-.||+.+|..++|+| +| .+|++++.||.-.+-+-++|.-+.+|.+|.+.|++.+.+.+....++++.|=+-++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4589999999999986 56 8899999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCc-ceeeeecCCCceEEEEEcCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQ-PINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~ 214 (434)
.-++ ..+..+.++.-+.+++|+.|...+++++.+ ++|||++..+ +...+.+|.+.|..+.|...
T Consensus 88 a~tg-------------delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 88 AVTG-------------DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred hhhh-------------hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence 8777 345556677788999999999999999954 8999998764 56788899999999999987
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEee----------------ecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR----------------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
+ +.+++.+.|++|++||.+++...+.+... ......+..||...+..++... -...|.+..
T Consensus 155 D-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SAS 231 (334)
T KOG0278|consen 155 D-KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESAS 231 (334)
T ss_pred C-ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc--Ccccccccc
Confidence 7 77888899999999999998877766433 3445567778887776655432 345688999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
++|+-..+++|+.|..++.||+.++..+..+..+|.++|.|+.|+|||...++|+.||+|++|.+..++..
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999999999888876666699999999999999999999999999999877654
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-33 Score=225.46 Aligned_cols=262 Identities=19% Similarity=0.362 Sum_probs=228.8
Q ss_pred HHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 43 RALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
.....+++|++.++.+..+|.||-..|..+++++-. .||++++.|+.|+.||++..+.++.+.+|-+.|.|++.+|.-.
T Consensus 170 s~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 170 SADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred CCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 345568899999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeee
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ 200 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~ 200 (434)
.|++|+.|.++++||+++. ........+.+.+..+.+.|-...+++++ ++|++||+..++....+.
T Consensus 249 vl~t~grDst~RvWDiRtr------------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt 316 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTR------------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT 316 (460)
T ss_pred eEEecCCcceEEEeeeccc------------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee
Confidence 9999999999999999887 34455556788999999998777777776 679999999999999999
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
.|...+.+++.+|.. +.|++++.| .|+-|++..+.....+ .+|...|++++.+
T Consensus 317 ~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nl-------------------------sgh~~iintl~~n 369 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNL-------------------------SGHNAIINTLSVN 369 (460)
T ss_pred cccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhcc-------------------------ccccceeeeeeec
Confidence 999999999999987 788888876 6899999877665543 4899999999998
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeeEEec-------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 281 PTGREFVTGSYDRTIRIFQYNGGRSREIYHT-------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 281 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
.|| ++++|+.+|.+.+||.+++........ .....|++.+|...|..|++|..|.+|++|.-+.
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 775 788999999999999998866544311 1235789999999999999999999999998653
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.9e-31 Score=257.71 Aligned_cols=244 Identities=20% Similarity=0.303 Sum_probs=198.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
...|.+++|++....+|++|+.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-- 609 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-- 609 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--
Confidence 467999999986448999999999999999999999999999999999999997 78899999999999999997653
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeec-cCCCEEEEeC--CeEEEEeCCCCc-ceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATAG--AQVDIWNHNRSQ-PINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
..........+.++.|. +++.++++++ +.|++||++..+ ++..+.+|...|.++.|.+ + ..|+
T Consensus 610 -----------~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lv 676 (793)
T PLN00181 610 -----------SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLV 676 (793)
T ss_pred -----------EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEE
Confidence 22333345577888884 5788888876 569999998765 5677888999999999973 4 6899
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+++.|+.|++||++...... .......+.+|...+.+++|+|++.+|++|+.|+.|++|+.
T Consensus 677 s~s~D~~ikiWd~~~~~~~~-------------------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGI-------------------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEECCCEEEEEeCCCCcccc-------------------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 99999999999997532100 01122345689999999999999999999999999999998
Q ss_pred CCCeeeeEEe------------ccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 301 NGGRSREIYH------------TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 301 ~~~~~~~~~~------------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
........+. ..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 7654332221 123356999999999999999999999999986
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=240.94 Aligned_cols=256 Identities=20% Similarity=0.351 Sum_probs=207.2
Q ss_pred cccccc-CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC--------------------------------------
Q 013873 58 FIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-------------------------------------- 98 (434)
Q Consensus 58 ~~~~l~-~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------------------------------------- 98 (434)
..+.+. +|.+.|.++.|++|| .|||+||.||.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 345566 999999999999999 9999999999999998654
Q ss_pred ----------------------CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc
Q 013873 99 ----------------------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (434)
Q Consensus 99 ----------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (434)
.++++.|.+|.+.|.+|.|+.+ ++|++++.|.+|++|++... .+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-------------~C 402 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-------------EC 402 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-------------ce
Confidence 0133456689999999999987 48999999999999999765 78
Q ss_pred eeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 157 LAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
+..+.|..-|+|++|+| |.++|++|+ +.++||++...+.+.-... ..-|++++|.|+| ...++|+.+|.+++|+.
T Consensus 403 L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdG-k~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 403 LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDG-KGAVIGTFNGYCRFYDT 480 (712)
T ss_pred eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCC-ceEEEEEeccEEEEEEc
Confidence 89999999999999999 667888886 7899999998887766555 4789999999998 88999999999999999
Q ss_pred cCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeeeEEecc
Q 013873 234 RMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
...+......+...... ...|. .|+++.|.|. ...+++.+.|..|+|||.+...++..+.+.
T Consensus 481 ~~lk~~~~~~I~~~~~K----------------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKK----------------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred cCCeEEEeeeEeeccCc----------------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 87765554422111100 01233 8999999984 345777778999999999888877777544
Q ss_pred C-CccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 313 R-MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 313 ~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+ ...-....|+.||++|++|+.|..|++|+.....
T Consensus 544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4 2344678899999999999999999999986544
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-32 Score=236.00 Aligned_cols=286 Identities=17% Similarity=0.239 Sum_probs=241.9
Q ss_pred cccccCCCCCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee
Q 013873 23 RVYHNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV 102 (434)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 102 (434)
+..|.-.-++||.+...-..---+...+|+.-++.+++.+.--.-+|.+..|-.-. +.+++|+.|+.|+||+.++++.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccceee
Confidence 55666677788888764333333467899999999999999999999999999987 99999999999999999999999
Q ss_pred EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE-EecCceEEEeeccC-CCEEEE
Q 013873 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWE-GDLFAT 180 (434)
Q Consensus 103 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 180 (434)
..|..|.+.|.+++.+|...++++++.|-+|++||.+.. -.+...+ .|..-+.++++.|. .+.+++
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------------WACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc------------eeeeeEEcCcceEEEEEEecCCCccceee
Confidence 999999999999999999999999999999999999765 2334333 45557889999994 567777
Q ss_pred eC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC-CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeC
Q 013873 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE-PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDS 257 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
++ ++|++|.+.+..+..++.+|...|+|+++.+.| ..+|++|+.|.+|++||..+..++.++
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------- 223 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--------------- 223 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh---------------
Confidence 75 789999999999999999999999999998865 348999999999999999988777654
Q ss_pred CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
.||...|..+.|+|.-..+++|+.||+|+||+..+-++...+.-+. ..++|++-.+.++.++.|.+.|.
T Consensus 224 ----------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-eRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 224 ----------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-ERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred ----------hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC-ceEEEEeecCCCCeEEEeccCCc
Confidence 5899999999999999999999999999999998877766665444 78999999998888888887776
Q ss_pred EEEeecCcccc
Q 013873 338 LRLWKAKASEQ 348 (434)
Q Consensus 338 v~vw~~~~~~~ 348 (434)
|.+ ++...++
T Consensus 293 i~v-~lgreeP 302 (794)
T KOG0276|consen 293 VTV-KLGREEP 302 (794)
T ss_pred EEE-EccCCCC
Confidence 644 3433333
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-30 Score=256.17 Aligned_cols=284 Identities=15% Similarity=0.271 Sum_probs=214.6
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----c----eeEEeeccCCCeeEEEEcC-CCCeEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----R----TVCQYSGHQGAVRGLTVST-DGRILVSCGTDC 131 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~----~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg 131 (434)
.+.+|.+.|.+++|+|++ .+||+|+.||.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 356699999999999998 99999999999999997542 1 222333 456899999987 478999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
+|++||+.++.. ......+...+++++|+| ++.++++++ +.|++||+.++..+..+..+ ..+.+
T Consensus 556 ~v~lWd~~~~~~------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQL------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred eEEEEECCCCeE------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999976632 223334667899999996 788888886 56999999999888888754 67899
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
+.|++..+.+|++|+.||.|++||++...... ..+.+|...|.++.|. ++.+|++
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~------------------------~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPL------------------------CTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccc------------------------eEecCCCCCEEEEEEe-CCCEEEE
Confidence 99976555899999999999999997653211 1234799999999997 7889999
Q ss_pred EeCCCcEEEEeCCCC------eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHH
Q 013873 289 GSYDRTIRIFQYNGG------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 362 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 362 (434)
++.|+.|++||+..+ ..+..+. .|...+.+++|+|++.+|++|+.||.|++|+......+..+.........
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~- 755 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS- 755 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc-
Confidence 999999999999743 3344444 34477899999999999999999999999998766544322110000000
Q ss_pred HHHHHHhhccchhhhhhhhccCCChHH
Q 013873 363 HEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 363 ~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
. .....+...|.+++|+|....++
T Consensus 756 --~-~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 756 --G-LEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred --c-cccCCCCcEEEEEEEcCCCCeEE
Confidence 0 00123455689999988766543
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=226.15 Aligned_cols=274 Identities=18% Similarity=0.287 Sum_probs=215.2
Q ss_pred CCChhhhhhhHHHHHHHHhhhhcccc---ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-c
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARP---FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-G 107 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~ 107 (434)
+.+.+..++........-+|.+..-. +.+++.||..+|..+.||||. ++|++|+.|-.+.+||+.+|.....+. +
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhhcccC
Confidence 44445555555555555566665433 478999999999999999998 999999999999999999999887764 3
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
|...+.+++|.|||..+++|+.|+++..||++....- .........+.+++.++||..+++.+ ..+
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~------------~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i 378 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG------------NWEGVRDPKVHDLAITYDGKYVLLVTVDKKI 378 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh------------cccccccceeEEEEEcCCCcEEEEEecccce
Confidence 4688999999999999999999999999999765321 11111124688999999999887765 459
Q ss_pred EEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
++|+..+......+.. ..+|++++.+.++ .++++.-.+..+++||+.....++++
T Consensus 379 ~l~~~e~~~dr~lise-~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY----------------------- 433 (519)
T KOG0293|consen 379 RLYNREARVDRGLISE-EQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKY----------------------- 433 (519)
T ss_pred eeechhhhhhhccccc-cCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHh-----------------------
Confidence 9999877665544443 5779999999988 78888889999999999976665544
Q ss_pred eeeCcccC--eEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEe
Q 013873 266 VHMGHESA--VMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLW 341 (434)
Q Consensus 266 ~~~~~~~~--i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw 341 (434)
.||... +..-+|-. +..++++|+.|+.|+||+..+++++..+.+|. ..|++|+|+| +..++|+|++||+|+||
T Consensus 434 --~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 434 --FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred --hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-ceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 245432 33334443 55799999999999999999999999886655 8899999999 66789999999999999
Q ss_pred ecCcc
Q 013873 342 KAKAS 346 (434)
Q Consensus 342 ~~~~~ 346 (434)
.....
T Consensus 511 g~~~~ 515 (519)
T KOG0293|consen 511 GPSDN 515 (519)
T ss_pred cCCcc
Confidence 87643
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=216.44 Aligned_cols=285 Identities=15% Similarity=0.245 Sum_probs=232.6
Q ss_pred hhhccccccccc-cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE--------eeccCCCeeEEEEcCCC
Q 013873 51 EKIFARPFIGAL-DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--------YSGHQGAVRGLTVSTDG 121 (434)
Q Consensus 51 ~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~i~~~~~~ 121 (434)
...++..+.+.+ -|..+-+-|..|+||| ++|++|+.||.|.+||..+|+.... |.-+..+|.|++|+.|.
T Consensus 197 Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 197 EERYPTQLARSIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hhhchHHhhhheecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH
Confidence 333444444444 3556778999999999 9999999999999999999876443 34578999999999999
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeee
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSF 199 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~ 199 (434)
..|++|+.||.|++|.+.++.+...+.. .+...++++.|+.|+..+.+++. .+++..+.+|+.+..+
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdr-----------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDR-----------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhh-----------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 9999999999999999999976544332 34668899999999998888874 5999999999999999
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 200 QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 200 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
.+|.+.|+...|.++| +.+++++.||+|++|+..+..+..++.. .+...+|+++-.
T Consensus 345 rGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~-----------------------~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 345 RGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKP-----------------------LGTDYPVNSVIL 400 (508)
T ss_pred cCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccC-----------------------CCCcccceeEEE
Confidence 9999999999999999 8899999999999999999888776521 234567888888
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEecc--CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhh
Q 013873 280 SP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 280 sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
-| +...+++|...++|+|.++.. +....+..+ ..+...+.+.+|.|.++++.+.|+.++.|.+.+|++-.++..
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-- 477 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-- 477 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--
Confidence 77 556799999999999999864 555555333 235677788999999999999999999999999998877754
Q ss_pred hhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 357 QRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
|...+-.++.||+++.+.
T Consensus 478 ---------------hEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 478 ---------------HEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ---------------ccccccccccCcccchhh
Confidence 455566688888877544
No 55
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=222.33 Aligned_cols=266 Identities=18% Similarity=0.280 Sum_probs=217.9
Q ss_pred hhhhHHHHHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEE
Q 013873 38 AVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGL 115 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i 115 (434)
..+.......+++|++.... ++.+|.|-.++|+.+.|.+++ .++++++.|+.+++|++.+.+...++.+|++.|+++
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 33444556678999998877 889999999999999999999 899999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS 193 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~ 193 (434)
.|......+++|+.|.+|++||+....+...... ...+..+..+ ...++++- +.|++||.++.
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhheeccccc-------------cccccceEec--ceeeeecccccceEEEeccCC
Confidence 9988777799999999999999987654332211 1222223222 23344443 56999999999
Q ss_pred cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC
Q 013873 194 QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA 273 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (434)
.+......+ +.|+++..++++ ..+++++.|.++.+.|+++......+...+. ..+| .
T Consensus 333 ~~~~sv~~g-g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~-------------------k~as--D 389 (459)
T KOG0288|consen 333 DKTRSVPLG-GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGF-------------------KCAS--D 389 (459)
T ss_pred ceeeEeecC-cceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeecccc-------------------cccc--c
Confidence 999998885 489999999988 5666779999999999998877665533221 1233 3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCc-cEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 274 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ-RVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
.+.+.|||++.|+++||.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 788999999999999999999999999999998888665533 699999999999999999999999993
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.4e-31 Score=239.34 Aligned_cols=285 Identities=17% Similarity=0.266 Sum_probs=234.0
Q ss_pred ccCCCCCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe
Q 013873 26 HNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105 (434)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 105 (434)
|.-.-.+||.....-..---..+++|+.--..++..|.+|.++|..++|+|++ .+|++|+.|-.|+||+..+.+++.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhh
Confidence 44445567766543222223457889998899999999999999999999998 99999999999999999999999999
Q ss_pred eccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C
Q 013873 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (434)
Q Consensus 106 ~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (434)
.+|-+.|..+.|++.-.++++++.|.+|+||+..+..+ ......|..-+.|..|+|...++++++ .
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~------------iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC------------IAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce------------EEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999999999999999988732 233344555788999999999999887 5
Q ss_pred eEEEEeCCCCc-----------------------------ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 184 QVDIWNHNRSQ-----------------------------PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 184 ~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
+|++||+..-+ ....+.+|...|+-++|+|.- .++++|+.|..|++|.+.
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEec
Confidence 79999975310 113456788899999999988 699999999999999987
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCC
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 314 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 314 (434)
..+.-. +....+|.+.|.++-|+|..+++++.|.|++|+|||+...+.+..+...+
T Consensus 237 etKaWE-----------------------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren- 292 (1202)
T KOG0292|consen 237 ETKAWE-----------------------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN- 292 (1202)
T ss_pred ccccee-----------------------ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-
Confidence 543211 11345899999999999999999999999999999999999988886665
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 315 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
...+.++-+|..+++++|- |+-+.||.++...+.
T Consensus 293 dRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 293 DRFWILAAHPELNLFAAGH-DSGMIVFKLERERPA 326 (1202)
T ss_pred CeEEEEEecCCcceeeeec-CCceEEEEEcccCce
Confidence 7899999999999887765 666778888744443
No 57
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=4.8e-30 Score=237.57 Aligned_cols=294 Identities=18% Similarity=0.251 Sum_probs=226.5
Q ss_pred cCCCCCeEEEEeCCCCCceEEeee--CCCcEEEEeCCC------------CceeEEeeccCCCeeEEEEcCCCCeEEEee
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIAN------------RRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 128 (434)
..+...|.++..+|+| ..++||+ .||.++||+.+. .+.+.....|.+.|+|+.|++||++||+|+
T Consensus 10 ~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 3445679999999999 9999999 999999998652 234566778999999999999999999999
Q ss_pred CCCcEEEeeCCCCCCCCCCCC------CCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeee
Q 013873 129 TDCTVKLWNVPVATLTDSDDS------TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ 200 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~ 200 (434)
.|+.|.||..........+.. ...-........|...+..+.|+|++.++++++ +.|.||+..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999874111111111 111112334455778999999999999999997 569999999999999999
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee---------------------------ecCceeEE
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---------------------------ANEDCNCY 253 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~ 253 (434)
+|.+.|..+.|.|-| .+|++-+.|++|++|++........+... .+....+.
T Consensus 169 ~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 999999999999999 89999999999999997654333222111 11112222
Q ss_pred EeeCCCCccceeeeeCcccCeEEEEEccC-----CC------------EEEEEeCCCcEEEEeCCCCeeeeEEeccCCcc
Q 013873 254 SYDSRKLDEAKCVHMGHESAVMDIDYSPT-----GR------------EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-----~~------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
..-.+........+-||.+++.++.|+|. .+ .+|+|+.|++|.||.....+++...+.--...
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 22223445555566799999999999992 11 58899999999999997777776665555678
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
|.+++|+|||..|++++.||+|.+..++..+.-..+...+..
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~ 369 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEIS 369 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhc
Confidence 999999999999999999999999999987765555544433
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.9e-30 Score=228.09 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=221.1
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec-cCCCeeEEEEcCCCCeEEEe
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~ 127 (434)
-+|+..+.+.......+.+.|+++.|+++| .+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|
T Consensus 200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG 276 (484)
T KOG0305|consen 200 YLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG 276 (484)
T ss_pred EEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe
Confidence 366666666555555568999999999999 9999999999999999999999999988 99999999998 5689999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeeecCCCc
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDT 205 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~ 205 (434)
+.||.|..+|++....... ....|...++.+.|++++.++++++.+ +.|||.....++..+..|...
T Consensus 277 sr~~~I~~~dvR~~~~~~~-----------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA 345 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVS-----------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA 345 (484)
T ss_pred cCCCcEEEEEEecchhhhh-----------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence 9999999999987743211 245577889999999999999999854 999999999999999999999
Q ss_pred eEEEEEcCCCCcEEEEEe--cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 206 VISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
|.+++|+|....+||+|+ .|+.|++||..++.....+ ...+.|..|.|++..
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--------------------------dtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--------------------------DTGSQVCSLIWSKKY 399 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--------------------------ccCCceeeEEEcCCC
Confidence 999999999989999976 5899999999988776654 356789999999988
Q ss_pred CEEEEE--eCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 284 REFVTG--SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 284 ~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+-|+++ -.++.|.||++.+.+....+..|. ..|..++++|||..+++|+.|.++++|++-..
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHT-SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCc-ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 776664 356789999999987777775554 88999999999999999999999999998764
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7e-30 Score=209.77 Aligned_cols=265 Identities=24% Similarity=0.429 Sum_probs=217.4
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC---eEEEeeCCCcEEEeeCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR---ILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~---~l~s~~~dg~v~iwd~~~ 140 (434)
-|.+.|.++...+ ..+++|++||.+++||. .|+....+.+|.++|.+++|.-... .|++++.|.++++|..+.
T Consensus 103 ~hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 4888899888873 78999999999999996 6788899999999999988864333 599999999999999987
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCC-------------------------C
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR-------------------------S 193 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~-------------------------~ 193 (434)
+...... ......|...+.+++..++|..+++++ ..+.||+..+ .
T Consensus 179 ~~~~~~~--------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 179 GENKVKA--------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred chhhhhH--------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 7543221 111226788999999999999999987 4599999221 2
Q ss_pred cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce-----------------EEEeeecCceeEEEee
Q 013873 194 QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR-----------------KVIMRANEDCNCYSYD 256 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 256 (434)
.++..+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.... .+++.++.+..+.+||
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecC
Confidence 467788899999999999983 578899999999999998764433 3456688899999999
Q ss_pred CCCCcc--ceeeeeCcccCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-eeeEEeccCCccEEEEEEcCCCCEEEEe
Q 013873 257 SRKLDE--AKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGR-SREIYHTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 257 ~~~~~~--~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
.+.... ..+.+.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+..+ ...|.++.|. ++.+|++|
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~~~~IvSG 406 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-EGGLIVSG 406 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-CCceEEec
Confidence 987654 456678999999999999955 458999999999999999887 66666555 4899999998 56689999
Q ss_pred eCCCcEEEeecC
Q 013873 333 SDDTNLRLWKAK 344 (434)
Q Consensus 333 ~~dg~v~vw~~~ 344 (434)
+.|..|+|+.-.
T Consensus 407 GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 407 GADNKLRIFKGS 418 (423)
T ss_pred cCcceEEEeccc
Confidence 999999998754
No 60
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3e-29 Score=228.94 Aligned_cols=256 Identities=18% Similarity=0.226 Sum_probs=192.5
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-------------EEeeccCCCeeEEEEcC-CCCeEEEeeCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-------------CQYSGHQGAVRGLTVST-DGRILVSCGTD 130 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~i~~~~-~~~~l~s~~~d 130 (434)
|-..|.....++++ ..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 44566777777776 55677776777777775443221 23678999999999999 88899999999
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceE
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVI 207 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (434)
|+|++||+......... .........+...+.+++|+|++ .++++++ +.|+|||+.+++.+..+..|...|.
T Consensus 98 gtIkIWdi~~~~~~~~~-----~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNI-----SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred CEEEEEecCCCcccccc-----CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999765321110 01122334566789999999986 5777765 6799999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC-eEEEEEccCCCEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA-VMDIDYSPTGREF 286 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~l 286 (434)
+++|+|++ .+|++++.||.|++||++++.....+ .+|.+. +..+.|.+++..+
T Consensus 173 sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl-------------------------~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 173 SLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSV-------------------------EAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEE-------------------------ecCCCCcceEEEEcCCCCeE
Confidence 99999988 79999999999999999987654433 356554 4567899988888
Q ss_pred EEEe----CCCcEEEEeCCCCee-eeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecCcccccccC
Q 013873 287 VTGS----YDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 287 ~~~~----~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~ 352 (434)
++++ .|+.|++||++.... ...........+....|++++++|++|+ .||.|++||+.+++.+...
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 7765 478999999987543 3223223334566778999999999887 5999999999988766543
No 61
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.3e-29 Score=229.63 Aligned_cols=230 Identities=18% Similarity=0.264 Sum_probs=180.7
Q ss_pred cccCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCCC-------ceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDC 131 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg 131 (434)
.+.||.+.|++++|+| ++ .+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4789999999999999 66 89999999999999999765 3466788999999999999975 6899999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCc-eEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDT-VIS 208 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~-i~~ 208 (434)
+|+|||+.++.. ......+...+.+++|+|++.++++++ +.|++||+++++.+..+..|.+. ...
T Consensus 149 tVrIWDl~tg~~------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 149 VVNVWDVERGKA------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEEEECCCCeE------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 999999987632 122233566899999999999999887 56999999999999888888764 456
Q ss_pred EEEcCCCCcEEEEE---ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 209 VRFNPAEPNVLATT---ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 209 i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
+.|.+++..++.+| +.|+.|++||++......... ...+...+....|++++++
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-----------------------~~d~~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-----------------------DLDQSSALFIPFFDEDTNL 273 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-----------------------ccCCCCceEEEEEcCCCCE
Confidence 78888874444444 247999999998654322110 0123345666789999999
Q ss_pred EEEEe-CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 286 FVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 286 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
|++|+ .|+.|++||+.++............++.+++|.|.-
T Consensus 274 L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 274 LYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 99887 599999999999887766554444677888888853
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=219.89 Aligned_cols=260 Identities=15% Similarity=0.260 Sum_probs=210.9
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 129 (434)
.|+-++.+.+ ..-.+.|++++|+|..+.-+|+.+. -.+.||+..+......+......|.+++|..||.+|++|+.
T Consensus 13 ~w~~~~~~~~---~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 13 YWRQETFPPV---HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred hhhhhccccc---ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence 3444444433 2335789999999987666776664 47999999988888877778889999999999999999999
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE-EeCC--eEEEEeCCCCcceeeeecCCCce
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA-TAGA--QVDIWNHNRSQPINSFQWGTDTV 206 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~i~i~d~~~~~~~~~~~~~~~~i 206 (434)
.|.|++||+.+.. .......+..++....|+|.++.++ +++. .+.+||+.+......+.+|.+.|
T Consensus 89 sG~V~vfD~k~r~------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 89 SGHVKVFDMKSRV------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred cCcEEEeccccHH------------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 9999999975532 3344455677888888998776554 4442 38999999998777899999999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
.|.+|+|..++++++|+.||.|++||++... ....+ .|..+|..+.+-|.|..
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--------------------------nhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--------------------------NHGCPVESVLALPSGSL 210 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--------------------------cCCCceeeEEEcCCCCE
Confidence 9999999988999999999999999999873 33333 79999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+++++ .+.|+|||+.+|.........|...|+|+++..++..|++|+-||.|++||+.+.+.+..+
T Consensus 211 iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 211 IASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 99998 5679999999665544444435589999999999999999999999999999888887655
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.3e-31 Score=209.52 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=226.3
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC------------C------ceeEEeeccCCCeeEEEEcCCC
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------------R------RTVCQYSGHQGAVRGLTVSTDG 121 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~------------~------~~~~~~~~h~~~v~~i~~~~~~ 121 (434)
..+..|.+++.+.+|+||| .++|+|+.|.+|+|.|++. + -.++++-.|...|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3457899999999999999 9999999999999999871 1 2366777899999999999999
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeee
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSF 199 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~ 199 (434)
..|++|+.|++|++||+..... ......+....++.++.|+|.|.+++.+.. .+++||+++.++....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa----------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA----------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHH----------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999965533 223334445668899999999999999874 5999999998776443
Q ss_pred ---ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc-cCeE
Q 013873 200 ---QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE-SAVM 275 (434)
Q Consensus 200 ---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 275 (434)
..|.+.|+++.+++.+ ++.++++.||.|++||=-.+.++.++. ..|. ..|.
T Consensus 255 nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~------------------------~AH~gsevc 309 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIG------------------------NAHGGSEVC 309 (430)
T ss_pred CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHH------------------------hhcCCceee
Confidence 3478899999999998 899999999999999977776665542 2444 4788
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC----CccEEEEEEcCCCCEEEEee-CCCcEEEeecCcccccc
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR----MQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQLG 350 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~~~ 350 (434)
+..|..+|+|+++.|.|..|++|.+.+++.+..+.+.. ...-+...|+....|++.-. ..+.+.-||.+++..+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 99999999999999999999999999999998885542 11234456777777877655 35789999999987765
Q ss_pred cCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 351 VLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
.+. .+|.+.++.+.-+|..|.-+
T Consensus 390 l~s----------------lgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 390 LLS----------------LGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred hcc----------------cCCCCCceEEEeCCCCCcee
Confidence 443 38999999999999998654
No 64
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.4e-29 Score=229.44 Aligned_cols=245 Identities=19% Similarity=0.279 Sum_probs=185.0
Q ss_pred HHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--------eeEEeeccCCCeeEEEE
Q 013873 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--------TVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~i~~ 117 (434)
..+++|+....+.+..+.+|.+.|.+++|+|+.+.+|++|+.||+|+|||+.++. .+..+.+|...|.+++|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 3456666666677889999999999999999744899999999999999997642 34467889999999999
Q ss_pred cCCCCe-EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc
Q 013873 118 STDGRI-LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194 (434)
Q Consensus 118 ~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~ 194 (434)
+|++.. |++++.||+|++||+.++.. .....+...+.+++|+++|.++++++ +.|+|||+++++
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~-------------~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKR-------------AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcE-------------EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 998875 56899999999999987632 22233456789999999999999875 579999999999
Q ss_pred ceeeeecCCCceEEE-----EEcCCCCcEEEEEecCC----cEEEEEccCC-CcceEEEeeecCceeEEEeeCCCCccce
Q 013873 195 PINSFQWGTDTVISV-----RFNPAEPNVLATTASDR----SITLYDLRMS-SPARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 195 ~~~~~~~~~~~i~~i-----~~~~~~~~~l~~~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
.+..+.+|.+.+.+. .|++++ .++++++.|+ .|++||++.. .+...+
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~---------------------- 257 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTM---------------------- 257 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEE----------------------
Confidence 999999988765433 344666 5677766664 7999999853 333222
Q ss_pred eeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC
Q 013873 265 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 265 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 327 (434)
....+.+.+......++|.++++|+.|+.|++|++..+.....-...+..++.+++|.|...
T Consensus 258 -~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 258 -SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred -EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 11223344444444557889999999999999999877543333333446788999999653
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.1e-30 Score=233.19 Aligned_cols=256 Identities=24% Similarity=0.364 Sum_probs=219.6
Q ss_pred HHhhhhcccccccc-ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE
Q 013873 48 AKLEKIFARPFIGA-LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 48 ~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 126 (434)
+.+|+...+.++.. +.||.+.|.++++..-+ .+|++|+.|.++++||..+|++...+.+|.+.|.++...+ .++++
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~s 306 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVS 306 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEee
Confidence 45788888888888 99999999999999744 8999999999999999999999999999999999988754 47888
Q ss_pred eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
|+.|.+|++|+++++ ..+.... +..+|.++... +.++++++ +.|.+||+.+++++..+.+|.
T Consensus 307 gs~D~tVkVW~v~n~-------------~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNG-------------ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred ccCCceEEEEeccCc-------------ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 999999999999876 3444444 77888888888 55555554 779999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCC-CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
..|.++.+.+. ..+++|+.|++|++||+++. .+... +.+|...+.++.+ .
T Consensus 372 ~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~t-------------------------l~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 372 GRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHT-------------------------LQGHTSLVSSLLL--R 422 (537)
T ss_pred ceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhh-------------------------hcCCccccccccc--c
Confidence 99999988764 67899999999999999987 55443 3578888876665 6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+++|++++.|++|++||..++.++..+...+...|+++++. ...+++++.||.+.+||+.+++....+
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 78999999999999999999999999877555788888886 456888899999999999999988765
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=196.51 Aligned_cols=261 Identities=19% Similarity=0.275 Sum_probs=212.3
Q ss_pred HHHHHHHHhhhhcccccccc--ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC
Q 013873 42 VRALTAAKLEKIFARPFIGA--LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 119 (434)
........+|++....++.. ..||.+.|-.++|+|..+.+|++++.|.+|++||+..+++...+....+.+. +.|+|
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp 116 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSP 116 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcC
Confidence 33344455666655555444 4799999999999999889999999999999999999999998876656664 88999
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCE-EEEeC-CeEEEEeCCCCccee
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL-FATAG-AQVDIWNHNRSQPIN 197 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~i~i~d~~~~~~~~ 197 (434)
+|.+++.++.|..|.+.|.++.+.... ......+..+.|+.++.+ +++.| |.|.|......+++.
T Consensus 117 ~g~~~~~~~kdD~it~id~r~~~~~~~-------------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 117 DGEYIAVGNKDDRITFIDARTYKIVNE-------------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred CCCEEEEecCcccEEEEEecccceeeh-------------hcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 999999999999999999987654322 222334445666655554 44445 789999999999999
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.++.|.....||.|+|+| .+|++|+.|..+.+||+...-+.+.+ .-+.-+|..+
T Consensus 184 si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~i-------------------------sRldwpVRTl 237 (313)
T KOG1407|consen 184 SIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCI-------------------------SRLDWPVRTL 237 (313)
T ss_pred ccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheee-------------------------ccccCceEEE
Confidence 999999999999999999 89999999999999999877666654 3678899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC---------CcEEEeecC
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD---------TNLRLWKAK 344 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~v~vw~~~ 344 (434)
.||.||++||+|+.|..|-|=++++|..+..+.. .++...|+|+|...+||.+++| |.|++|-+.
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999999999999999987766644 3788999999999999987764 556666543
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7e-30 Score=196.69 Aligned_cols=258 Identities=15% Similarity=0.242 Sum_probs=211.4
Q ss_pred HHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
...+++|+...+.+++++.||...|..++.+.|+ ..|++|+.|..|.+||+++|+..+.+.+|.+.|+.+.|+.+...+
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV 116 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence 3457899999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE-EecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 203 (434)
++|+.|.++++||.++... .|++.+ .....+.++......-+..+.+|+++.||++.++....+- .
T Consensus 117 ~SgsfD~s~r~wDCRS~s~-----------ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g 183 (307)
T KOG0316|consen 117 ASGSFDSSVRLWDCRSRSF-----------EPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--G 183 (307)
T ss_pred EeccccceeEEEEcccCCC-----------CccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--C
Confidence 9999999999999987753 344333 3355777777765554445556899999999998776655 4
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE--EEEEcc
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM--DIDYSP 281 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~sp 281 (434)
.+|++++|++++ +..++++.|+++++.|-.+++.+..+ .+|.+.-. .++++.
T Consensus 184 ~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sY-------------------------kGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 184 HPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSY-------------------------KGHKNMEYKLDCCLNQ 237 (307)
T ss_pred CcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHh-------------------------cccccceeeeeeeecc
Confidence 679999999999 78889999999999998887766543 36655433 455666
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
....+++|+.||.|++||+.....+..+..+..-.|++++++|.-.-|+++. ++.+..|.-
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 6778999999999999999999888777665534489999999766666665 345667753
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.6e-30 Score=227.20 Aligned_cols=264 Identities=19% Similarity=0.366 Sum_probs=220.9
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
++.||...|.+++++.+. ..+++|+ .+++++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 568999999999999996 5566655 57999999999999999874 4899999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCC-----Cc--ce------eeeecCCCc
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNR-----SQ--PI------NSFQWGTDT 205 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~-----~~--~~------~~~~~~~~~ 205 (434)
..+. .....|.+.+++++.+||+..++++++ +|++||..- +. .. .++. -.+.
T Consensus 444 ~~l~------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~dd 510 (888)
T KOG0306|consen 444 ASLV------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDD 510 (888)
T ss_pred hhhh------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-cccc
Confidence 7543 223357889999999999999998875 599998532 11 11 1122 2567
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
|.|+.++|++ .+|+++-.|.++++|-+.+.+..- .+.||.-||.|+.+|||+++
T Consensus 511 vL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFfl-------------------------sLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 511 VLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFL-------------------------SLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred EEEEEEcCCC-cEEEEEeccCeEEEEEecceeeee-------------------------eecccccceeEEeccCCcCe
Confidence 9999999999 899999999999999987654333 23499999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHH
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEA 365 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
++|||.|..|++|-++-|.+...+..|. ..|.++.|.|...++.++|.||.|+-||-...+.++.+.
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHd-DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~------------ 631 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHD-DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD------------ 631 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhccc-CceeEEEEcccceeEEEecCcceEEeechhhhhhheeec------------
Confidence 9999999999999999999988887665 789999999999999999999999999999988887775
Q ss_pred HHHhhccchhhhhhhhccCC
Q 013873 366 VKNRYKHLPEIKRIVRHRHL 385 (434)
Q Consensus 366 ~~~~~~~~~~v~~~~~~~~~ 385 (434)
+|..+|.+++-.|.-
T Consensus 632 -----~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 632 -----GHHSEVWCLAVSPNG 646 (888)
T ss_pred -----cchheeeeeEEcCCC
Confidence 566677777776664
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-29 Score=211.89 Aligned_cols=253 Identities=21% Similarity=0.350 Sum_probs=201.9
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----------ceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----------RTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDC 131 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg 131 (434)
-.|.+.|+.+.+.|+.+.++|+++..+.|.|||..+. .+-..+.+|...-++++|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4599999999999999899999999999999997642 1223688999988899999843 4799999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCC--CCcceeeeecCCCce
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHN--RSQPINSFQWGTDTV 206 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~--~~~~~~~~~~~~~~i 206 (434)
+|++||+........ ..........+...+..++|++.. .+|++.+ +.+.|||++ +.++......|...+
T Consensus 201 ~i~lwdi~~~~~~~~-----~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 201 TICLWDINAESKEDK-----VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred cEEEEeccccccCCc-----cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999976643210 012233444566788999999854 4555544 569999999 566777888899999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GRE 285 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~ 285 (434)
.|++|+|.+..+||+|+.|++|++||+|.... +...+.+|...|.++.|||. ...
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------------~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------------PLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhccc------------------------CceeccCCCcceEEEEeCCCCCce
Confidence 99999999999999999999999999986533 34456799999999999995 457
Q ss_pred EEEEeCCCcEEEEeCCCCee-------------eeEEeccCCccEEEEEEcCCCCE-EEEeeCCCcEEEeecC
Q 013873 286 FVTGSYDRTIRIFQYNGGRS-------------REIYHTKRMQRVFCVKFSCDASY-VISGSDDTNLRLWKAK 344 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~vw~~~ 344 (434)
||+++.|+.+.|||+..-.. +...+.+|...|..+.|+|+..+ |++.+.|+.+.||+..
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999999999863211 12447778889999999997664 6678899999999986
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.9e-31 Score=221.83 Aligned_cols=265 Identities=20% Similarity=0.298 Sum_probs=218.3
Q ss_pred ceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEE
Q 013873 100 RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (434)
+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.... ........|..+|..+.|+.+|..+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchhhhhhhhccccCCee
Confidence 55778899999999999999 88999999999999999997631 2333445667789999999999999
Q ss_pred EEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceE---------------
Q 013873 179 ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK--------------- 241 (434)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------- 241 (434)
++++ ..+++||+++|+++..+.. ...++|+.|+|++.++|++|+.|+.|+.||+++++.++.
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 9987 5699999999999999986 567899999999999999999999999999998754332
Q ss_pred ---EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee---eEEeccC-C
Q 013873 242 ---VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR---EIYHTKR-M 314 (434)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~-~ 314 (434)
..+..+++..+.+|+.+...........+.-...++..+|+++++++-+.|+.|.+|.+...-.. ..+..+. .
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 24557888899999988776666666666667788999999999999999999999987543221 2222222 2
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 315 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
+--..+.|||||++|++|+.||.+.+||.++.+++..+. +|...+..+.|||..+..+.+++
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-----------------ah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-----------------AHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-----------------cCCcceEEEEecCCCcceeEecc
Confidence 445679999999999999999999999999998877664 67788889999999998776655
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=215.69 Aligned_cols=279 Identities=18% Similarity=0.298 Sum_probs=227.4
Q ss_pred hccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEeeCC
Q 013873 53 IFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (434)
Q Consensus 53 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 130 (434)
..+......+..|.+.|..+.|-++. ..|++|+.|..|++|+....+ .+.++.+..++|+++.|.+++.++++++.|
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC
Confidence 33445566788999999999999997 889999999999999987766 677788888999999999999999999999
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEE
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
+.+++|++........ +..|...++++.+......+++++. ++++||+....+..++-. .+.+..
T Consensus 241 ~~~r~Wnvd~~r~~~T------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnD 307 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHT------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCND 307 (459)
T ss_pred Cceeeeeccchhhhhh------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccc
Confidence 9999999988765333 3335667777777766666666664 599999999887776654 455667
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
|..++ ..+++|..|+.|++||.+...+...+ +-.+.|+++..+++|..|.+
T Consensus 308 I~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv--------------------------~~gg~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 308 IVCSI---SDVISGHFDKKVRFWDIRSADKTRSV--------------------------PLGGRVTSLDLSMDGLELLS 358 (459)
T ss_pred eEecc---eeeeecccccceEEEeccCCceeeEe--------------------------ecCcceeeEeeccCCeEEee
Confidence 77663 67999999999999999998877665 33458999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEecc---CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHH
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTK---RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEA 365 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
++.|.++.+.|+++......+... .....+.+.|||++.|+++|+.||.|+||++.++++...+...
T Consensus 359 ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s---------- 428 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS---------- 428 (459)
T ss_pred ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC----------
Confidence 999999999999998887776432 2346889999999999999999999999999999987766532
Q ss_pred HHHhhccchhhhhhhhccCCChHH
Q 013873 366 VKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 366 ~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
...+.|.+++|.|.-..++
T Consensus 429 -----~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 429 -----TSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred -----CCCcceEEEEEcCCCchhh
Confidence 1223689999998665554
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=196.87 Aligned_cols=271 Identities=18% Similarity=0.304 Sum_probs=208.2
Q ss_pred EEEEeCCCCCceEEeee-------CCCcEEEEeCCCCceeEEee--ccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCC
Q 013873 70 SCMAKNPNYLKGFFSGS-------MDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~ 139 (434)
.++.|||--.++||.+. ..|++.|.++...+-+..+. .-.+.+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889986556665542 36889999986554444432 24678999999984 5688899999999999964
Q ss_pred CCCCCCCCCCCCCCCCce-eEEEecCceEEEeeccCC-CEEEEe--CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 140 VATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQWEG-DLFATA--GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
.. ..++ ....|...+.++.+++-. ..++++ +++|++|+.+.++.+.++.+|...|....|+|..
T Consensus 92 ~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 92 MP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred CC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 33 2233 334567789999998844 344444 4889999999999999999999999999999999
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCc
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~ 294 (434)
+++|++++.||++++||++....... +..|...|.++.|+. +.+.|+||+.|+.
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMS-------------------------IEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeE-------------------------EEeccceeEeecccccCCcEEEecCCCce
Confidence 99999999999999999987643332 347889999999998 6678999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhh-cc
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRY-KH 372 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 372 (434)
|+.||++.-+.......+|.-.|..+.||| ...+|++++.|-+++|||....... .+.+ .|
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-----------------~e~~~~H 277 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-----------------IETVDHH 277 (311)
T ss_pred EEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-----------------hhhhhcc
Confidence 999999876543333355657899999999 4568999999999999999755432 1222 45
Q ss_pred chhhhhhhhccCCChHHHHHHH
Q 013873 373 LPEIKRIVRHRHLPKPIYKAAS 394 (434)
Q Consensus 373 ~~~v~~~~~~~~~~~~~~~~~~ 394 (434)
+.=+..+.|.+..|..+...+-
T Consensus 278 tEFv~g~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPGQVASTGW 299 (311)
T ss_pred ceEEeccccccccCceeeeccc
Confidence 5557888888888776655543
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=202.67 Aligned_cols=289 Identities=21% Similarity=0.361 Sum_probs=227.8
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
..+++.|.||.+.|..++-.... .++.+++.|.+.+||.++++.++..+.+|.+.|++|.|++.+.++++++.|++..|
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred EeehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 34678899999999999998876 79999999999999999999999999999999999999999999999999999999
Q ss_pred eeC------CCCCCCCCCCC-------------------CC---CCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE
Q 013873 136 WNV------PVATLTDSDDS-------------------TD---NSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 136 wd~------~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
|.. ........... .. .......+..+...+.+..|-..|..+++++ .+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 982 22111100000 00 0011122334556677777877887777765 679
Q ss_pred EEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
.+||++++.++..+.+|....+.++-+|.. .++++.+.|.+.++||++..-+ .+.
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~------------------------sV~ 351 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ------------------------SVA 351 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc------------------------eee
Confidence 999999999999999999999999999987 8999999999999999984322 223
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
++.+|...|+++.|.-+ ..+++|+.|.+|++||+++.+. +.++... ++++.++.+..+..|+.--++..|++||++
T Consensus 352 VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecC
Confidence 66799999999999865 4689999999999999987653 4444433 789999999988899998889999999996
Q ss_pred cccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 345 ASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
. ..+..+... .+.+|...|.+.+|....|
T Consensus 429 G-~RlaRlPrt------------sRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 429 G-NRLARLPRT------------SRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred C-CccccCCcc------------cccccceeeeeeeccccCc
Confidence 4 444444321 2237888888888865555
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-27 Score=192.00 Aligned_cols=257 Identities=17% Similarity=0.275 Sum_probs=210.2
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC--CCcEEEee
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT--DCTVKLWN 137 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--dg~v~iwd 137 (434)
+.|..-...|+++.|+++| .+|++++.|.+++|||..+++.++++..+.-.|..++|......++.++. |.+|+..+
T Consensus 8 k~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 4455567899999999999 89999999999999999999999999988889999999887777777666 88999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
+.+.+. ......|...|.+++.+|-+..+++++ ++|++||++..++...+..... ..++|.|.|
T Consensus 87 l~dNky------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~G 152 (311)
T KOG1446|consen 87 LHDNKY------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEG 152 (311)
T ss_pred eecCce------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCC
Confidence 988743 444556678899999999999998887 5699999998887766654333 457899988
Q ss_pred CcEEEEEecCCcEEEEEccCCC--cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 216 PNVLATTASDRSITLYDLRMSS--PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
-+||++.....|++||+|... |...+.+ ..+.....+.|.|||||++++.++..+
T Consensus 153 -LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i----------------------~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 153 -LIFALANGSELIKLYDLRSFDKGPFTTFSI----------------------TDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred -cEEEEecCCCeEEEEEecccCCCCceeEcc----------------------CCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 788888888899999998753 2222211 113456788999999999999999999
Q ss_pred cEEEEeCCCCeeeeEEeccCCc--cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
.+++.|.-+|.....+...... --.+.+|+||++++++|+.||+|.+|+++++..+..+.+
T Consensus 210 ~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 210 FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999988777544321 125788999999999999999999999999999887765
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=209.20 Aligned_cols=238 Identities=17% Similarity=0.313 Sum_probs=209.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
...++++...|.. +.+++|+.|.++.++|..+++.+..++||...|+.+.|+++...+++++.|-.|++|.....
T Consensus 219 ~pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---- 293 (506)
T KOG0289|consen 219 TPGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---- 293 (506)
T ss_pred CCCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----
Confidence 3678999999985 88999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC--CCceEEEEEcCCCCcEEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--TDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~ 221 (434)
..+.....+..+++.+..+|.|.++++++ +...+.|++++..+...... .-.+++.+|+||| .+|.+
T Consensus 294 --------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgt 364 (506)
T KOG0289|consen 294 --------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGT 364 (506)
T ss_pred --------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEec
Confidence 45666677889999999999999999987 45888999999888776652 3458999999999 89999
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
|..||.+++||+........+ .+|.++|..++|+.+|-||++++.|+.|++||++
T Consensus 365 gt~d~~vkiwdlks~~~~a~F-------------------------pght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKF-------------------------PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred cCCCceEEEEEcCCccccccC-------------------------CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 999999999999887655443 5899999999999999999999999999999999
Q ss_pred CCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 302 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
..+....+.......+.++.|.+.|.+|+.++.|=.|++++
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 88887777666556799999999999999998876666655
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=205.29 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=212.3
Q ss_pred hhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
+......+..|.||...|+.+.|+|+. ..+++++.|-.|+||.............|.++|+.+..+|.|.||++++.||
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence 333455678899999999999999998 8899999999999999988877777889999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEe---cCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCce
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVW---KNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTV 206 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i 206 (434)
+..+.|++++.. ...... .-.+.+.+|+|||.+|+++. +.++|||+..+..+..|.+|.++|
T Consensus 326 ~w~Fsd~~~g~~-------------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 326 TWAFSDISSGSQ-------------LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eEEEEEccCCcE-------------EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 999999988732 333333 23588999999999999986 669999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
..++|+.+| .+|++++.|+.|++||+|......++.. ....++.++.|.+.|.+|
T Consensus 393 k~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l------------------------~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 393 KAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQL------------------------DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred eEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeec------------------------cccccceeEEEcCCCCeE
Confidence 999999988 8999999999999999998876665532 223479999999999999
Q ss_pred EEEeCCCcEEEEeCCCCee--eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 287 VTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
+.++.|=.|++++-.+... ...+.. +.+..+++.|.....++++++.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccchhheEEeec
Confidence 9998887787777554433 333332 3357889999999999999999999888754
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=217.87 Aligned_cols=299 Identities=15% Similarity=0.205 Sum_probs=214.3
Q ss_pred hhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce----eEEe-eccCCCeeEEEEcCCCCeEEE
Q 013873 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT----VCQY-SGHQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~-~~h~~~v~~i~~~~~~~~l~s 126 (434)
...+...--.|.+|+..|+++++.|.| ..|++|+.|.+|++||+..... .+.+ ......|.++.|++.|..|++
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 334555556789999999999999999 9999999999999999875422 2222 234458999999999999998
Q ss_pred eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcc-eeeee--
Q 013873 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQP-INSFQ-- 200 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~-~~~~~-- 200 (434)
.+.....+|+|-.............--......-.|...+++.+|+|... .|++++ |+++|||++..+. +..+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 88888999999655443322211110011122233455778889999653 444443 7899999987543 22222
Q ss_pred ---cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc--CeE
Q 013873 201 ---WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES--AVM 275 (434)
Q Consensus 201 ---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 275 (434)
+..-.++.++|++++ .++++|+.||.|.+|+.+....... .++..+|.. .|+
T Consensus 312 ~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~----------------------~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV----------------------MKVKDAHLPGQDIT 368 (641)
T ss_pred cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc----------------------eEeeeccCCCCcee
Confidence 223478899999999 6799999999999999865432221 223457777 899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeee-eEEe-ccCCccEEEEEEcCCCCEEEEeeC------CCcEEEeecCccc
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-EIYH-TKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAKASE 347 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~~~ 347 (434)
||.||+||++|++-|.|+++++||++..+.. .... ....-+-+.++|||+.++|++|+. .|.+.+||..+.+
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 9999999999999999999999999875432 2221 112245678999999999999874 5789999999998
Q ss_pred ccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHH
Q 013873 348 QLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYK 391 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 391 (434)
.++.+.- ....|-.+.|||.+++++..
T Consensus 449 ~v~ki~i-----------------~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 449 TVYKIDI-----------------STASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred eEEEecC-----------------CCceEEEEeecchhhheeee
Confidence 8876642 13445556777777765443
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=197.98 Aligned_cols=242 Identities=18% Similarity=0.305 Sum_probs=194.4
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC--eEEEeeCCCcEEEe
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR--ILVSCGTDCTVKLW 136 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg~v~iw 136 (434)
+..+..|.++|++++.+. .++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 456789999999999974 8899999999999999999999999999999999999998765 89999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
+...-.+ ....-.+...|+.++.+|.+++.++.++ .++.||+-+++....+... ...+.+.|+|.
T Consensus 113 ~~~~W~~------------~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~ 179 (362)
T KOG0294|consen 113 RVGSWEL------------LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQ 179 (362)
T ss_pred EcCCeEE------------eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCC
Confidence 9865532 2233345667999999999999888775 4999999998876666543 33455999999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
| ..|+.++.+ .|-+|.+........+ .....+.++.|- ++.+|++|+.|+.
T Consensus 180 G-d~F~v~~~~-~i~i~q~d~A~v~~~i--------------------------~~~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 180 G-DHFVVSGRN-KIDIYQLDNASVFREI--------------------------ENPKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred C-CEEEEEecc-EEEEEecccHhHhhhh--------------------------hccccceeeeec-CCceEEEecCCce
Confidence 9 556555544 6888988766554433 122346666665 6778999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEE--cCCCCEEEEeeCCCcEEEeecCcc
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
|.+||.++..+...+..| ...|-++.+ .|++.+|+++++||.|+|||++..
T Consensus 231 i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999997777666554 488988884 668899999999999999999877
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-29 Score=197.09 Aligned_cols=228 Identities=19% Similarity=0.347 Sum_probs=199.4
Q ss_pred hhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-eeEEeeccCCCeeEEE
Q 013873 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYSGHQGAVRGLT 116 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~i~ 116 (434)
..+...+.-..++|+..++..++.|. |..-|.+++|+.|. .+|++|+.+..++|||++..+ +...+.+|++.|..+-
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 34445556678999999999998886 88899999999998 999999999999999998754 4667899999999999
Q ss_pred EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEEEeCCCCcc
Q 013873 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQP 195 (434)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~ 195 (434)
|....+.+++++.|++|++||..++ ..+.......++.++.++++|.++.++.| .|.+||..+..+
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTg-------------t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTG-------------TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccC-------------cEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence 9998899999999999999999988 45566667889999999999999998875 699999999999
Q ss_pred eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
+..+.. ...|.+...+|+. ..|++|+.|+.++.||..++.....+ ..+|.++|.
T Consensus 218 lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~------------------------nkgh~gpVh 271 (334)
T KOG0278|consen 218 LKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY------------------------NKGHFGPVH 271 (334)
T ss_pred eeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec------------------------ccCCCCceE
Confidence 988876 5668999999988 89999999999999999988665432 258999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeee
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
|+.|+|+|...++|+.||+|++|....++..
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999998776543
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-28 Score=192.94 Aligned_cols=262 Identities=16% Similarity=0.264 Sum_probs=209.7
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
..+|-...++.+.++.||++.|.|+..+.+. .+|++|+.|.++++||+++|+.+..++ ...+|..+.|+.+|++++.+
T Consensus 34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred ceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEE
Confidence 4567777888999999999999999999998 999999999999999999999999988 57899999999999988876
Q ss_pred eC-----CCcEEEeeCCCCCCCCCCCCCCCCCC-ceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc-ceee
Q 013873 128 GT-----DCTVKLWNVPVATLTDSDDSTDNSSE-PLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ-PINS 198 (434)
Q Consensus 128 ~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~ 198 (434)
.. .+.|.++|++..... ..... ..........+...-|.|-+..++++. |.|.+||.++++ .+..
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSD------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS 185 (327)
T ss_pred ehhhcCcceEEEEEEccCChhh------hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec
Confidence 44 478999999754321 01122 334445567889999999999999997 679999999974 5566
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
...|...|+.++++++. .+|++++.|.+-++||+++.....++ ....||++.+
T Consensus 186 ~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty--------------------------~te~PvN~aa 238 (327)
T KOG0643|consen 186 DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTY--------------------------TTERPVNTAA 238 (327)
T ss_pred hhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEe--------------------------eeccccccee
Confidence 67899999999999998 89999999999999999988777665 3467899999
Q ss_pred EccCCCEEEEEeCCCcEEE--EeCCCCe------------eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 279 YSPTGREFVTGSYDRTIRI--FQYNGGR------------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~i--wd~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
++|....++.|+.-...-| =+.+.++ .+.. ..+|-++|++++|+|+|+..++|+.||.|++..+.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr-vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR-VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc-ccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 9998877777664332222 1222222 1112 23455899999999999999999999999998765
Q ss_pred c
Q 013873 345 A 345 (434)
Q Consensus 345 ~ 345 (434)
.
T Consensus 318 ~ 318 (327)
T KOG0643|consen 318 S 318 (327)
T ss_pred c
Confidence 4
No 81
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.1e-27 Score=216.62 Aligned_cols=233 Identities=15% Similarity=0.237 Sum_probs=175.0
Q ss_pred eeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe
Q 013873 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW 162 (434)
Q Consensus 84 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (434)
.|+.+|.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++...... ..........+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----i~~p~~~L~gH 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----IKDPQCILKGH 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----cccceEEeecC
Confidence 3667889999998887888889999999999999996 789999999999999999764321000 00111223446
Q ss_pred cCceEEEeeccCCCEE-EEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 163 KNSFWAVDHQWEGDLF-ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
...+.+++|+|++..+ ++++ +.|++||+.+++.+..+. +...|.+++|+|+| .+|++++.|+.|++||++++...
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE
Confidence 6789999999998754 4543 679999999998777775 46789999999998 78899999999999999987655
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE-----EEEccCCCEEEEEeCCC----cEEEEeCCC-CeeeeEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD-----IDYSPTGREFVTGSYDR----TIRIFQYNG-GRSREIY 309 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~sp~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~ 309 (434)
..+ .+|.+.+.. ..|++++.+|++++.|+ .|+|||++. +.++...
T Consensus 203 ~tl-------------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 203 SSF-------------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred EEE-------------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 433 356655432 34568999999988775 799999985 4455444
Q ss_pred eccC-CccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 310 HTKR-MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 310 ~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.... .+.+......++|.++++|+.|+.|++|++..+.
T Consensus 258 ~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 258 SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 2222 1233333335568899999999999999997653
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.6e-28 Score=193.60 Aligned_cols=251 Identities=18% Similarity=0.354 Sum_probs=186.1
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC------------------------------------cee
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR------------------------------------RTV 102 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~------------------------------------~~~ 102 (434)
+..|+||.+.|++++|+.|| .+|+|++.|++|+||++++. ..+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 56789999999999999999 99999999999999998632 111
Q ss_pred EEee-----------------------ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 103 CQYS-----------------------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 103 ~~~~-----------------------~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
+.+. .|.-.|..+-...++.+|++++.|..|.+|++. ++.+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id----------- 225 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID----------- 225 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-----------
Confidence 1110 133455556666678899999999999999997 43322211
Q ss_pred EEecCceEEEeeccCCCEEEEeC--CeEEEEeCCC---C-----cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 160 YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR---S-----QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~---~-----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
.....-+..+++|+|+++++++ -++.+|.+-- | ..+..+.+|...|..++|+|+. ..+++.+.||.++
T Consensus 226 -tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 226 -TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWR 303 (420)
T ss_pred -cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEE
Confidence 1122345678999999999998 4699998532 2 3467788999999999999988 7899999999999
Q ss_pred EEEccCCCcceEEEeeecCceeEEEeeCCCCccce----eeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 013873 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK----CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 305 (434)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 305 (434)
+||+.-.-. ..+....+ ..+....+....+.++|+|+.|+.+. ...+.+|..+.++.
T Consensus 304 iwdtdVrY~------------------~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 304 IWDTDVRYE------------------AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD 364 (420)
T ss_pred EeeccceEe------------------cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc
Confidence 999763210 00000000 01112223334799999999888776 56799999999998
Q ss_pred eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 306 REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 306 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
...+...|...|++++|+++|+++++++ |..++++.-.
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 8888888888999999999999999987 6688887633
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.4e-27 Score=178.59 Aligned_cols=251 Identities=21% Similarity=0.334 Sum_probs=199.7
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC------C-----c----eeEEeeccCCCeeEEEEcCCCCeEEEeeC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------R-----R----TVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~------~-----~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 129 (434)
.+..|.+++|+|.| .+.+.|+...+.+|.-... + + ..+.-+.|.+.|.|.+|+|+|++|++|+.
T Consensus 31 dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 46789999999999 8999999999988874321 1 1 11223568999999999999999999999
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc----CCCEEEEeC-Ce--EEEEeCCCCcceeeeecC
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW----EGDLFATAG-AQ--VDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~--i~i~d~~~~~~~~~~~~~ 202 (434)
|.+|++.-.+...... ......+..+.+.+..++|-. .+.++++++ |+ |++-|..+++....+.+|
T Consensus 110 dk~ik~l~fn~dt~~~-------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNA-------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred CceEEEEecccccccc-------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 9999998765543321 134556667778888888754 355777766 44 777789999999999999
Q ss_pred CCceEEEE-EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 203 TDTVISVR-FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 203 ~~~i~~i~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
.+.|.++- |+ + -.|++|+.|.+|++||++.+..+..+-..... -.-....|.+++..|
T Consensus 183 tghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------------------~glessavaav~vdp 241 (350)
T KOG0641|consen 183 TGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------------------GGLESSAVAAVAVDP 241 (350)
T ss_pred cccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccC------------------CCcccceeEEEEECC
Confidence 99998774 43 3 78999999999999999988776654210000 001246799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
.|++|++|-.|....+||++.++.+..+..+. ..|.|+.|+|...|+++++.|..|++=|++.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999999999999999999999999997765 8899999999999999999999999999864
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-27 Score=212.13 Aligned_cols=297 Identities=17% Similarity=0.274 Sum_probs=230.9
Q ss_pred HHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 43 RALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
..-+..++|++.++..+.+++++.+.|+++.-+|-= ..+|.|..+|+|.++|+..++.+.+|+...+.|++++|..||.
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence 344567899999999999999999999999999986 8999999999999999999999999985469999999999987
Q ss_pred e-EEEeeCCCcEEEeeCCCCCCCCCCCCC-----------------------------------------------CCCC
Q 013873 123 I-LVSCGTDCTVKLWNVPVATLTDSDDST-----------------------------------------------DNSS 154 (434)
Q Consensus 123 ~-l~s~~~dg~v~iwd~~~~~~~~~~~~~-----------------------------------------------~~~~ 154 (434)
. +++|+..|.+.+||++..++....... ..+.
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 5 556667799999998655543211100 0000
Q ss_pred CceeEEE-------------------------------------------------------------------------
Q 013873 155 EPLAVYV------------------------------------------------------------------------- 161 (434)
Q Consensus 155 ~~~~~~~------------------------------------------------------------------------- 161 (434)
.++..+.
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 0000000
Q ss_pred -----------------------ec------CceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeee---ecCCCceE
Q 013873 162 -----------------------WK------NSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSF---QWGTDTVI 207 (434)
Q Consensus 162 -----------------------~~------~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~---~~~~~~i~ 207 (434)
+. ..+.+++.++-|++.+.| +|.|.+|++.+|-...++ ..|.+.|+
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 00 122445555555554444 367999999998877777 47899999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee-----------------ecCceeEEEeeCCCCccceeeeeCc
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-----------------ANEDCNCYSYDSRKLDEAKCVHMGH 270 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (434)
.++....+ ..+++++.+|.+.+||.........+.+. +..+..+.++|.... .....+.+|
T Consensus 498 gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh 575 (910)
T KOG1539|consen 498 GLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGH 575 (910)
T ss_pred EEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhcc
Confidence 99998876 78999999999999999887654443322 566677777776543 334456699
Q ss_pred ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC-CcEEEeecC
Q 013873 271 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-TNLRLWKAK 344 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~vw~~~ 344 (434)
.+.|++++|||||++|++++.|++|++||+.++.++..+... .+.+++.|+|+|.+||+...| .-|++|--.
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--SPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--CcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999999999999999999999998888665 688999999999999999988 679999643
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=190.18 Aligned_cols=250 Identities=19% Similarity=0.311 Sum_probs=199.3
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-cee-EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-RTV-CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
.-.+.|.+|+|||....++++||.||+|++|+++.. ... +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 347899999999965477889999999999999873 332 234569999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC--EEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD--LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
+...+..|..++..+.|-+... .|++++ .+|+.||++...++.++.. .+.+.++..-. .
T Consensus 105 -------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~---p 167 (347)
T KOG0647|consen 105 -------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLY---P 167 (347)
T ss_pred -------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhccC---c
Confidence 5666777888999999888766 777776 6799999999999988876 56677777653 5
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
+++++..+..|.+|+++.+....+. ....-.-.+.|++..+|....+.|+-+|.+.|
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~-----------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKR-----------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhh-----------------------hcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 7888889999999999765433221 11123446889999999888899999999999
Q ss_pred EeCCCC--eeeeEEeccC--------CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 298 FQYNGG--RSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 298 wd~~~~--~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
..++.+ +.-..+..|. .-.|++++|+|....|+|+|.||++.+||-+....+.+.+
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 999876 3334444443 1257889999998999999999999999988776665543
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=220.68 Aligned_cols=265 Identities=24% Similarity=0.375 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhhccccccccccC-CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE-eeccCCCeeEEEEcC
Q 013873 42 VRALTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVST 119 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~~ 119 (434)
.+.......|+....+-...+.+ |...+.|..|++ .++++++.|++|++||..++..+.. +.+|.+.|+++++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~ 259 (537)
T KOG0274|consen 183 RRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS 259 (537)
T ss_pred hhhhhccccccccccccceeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec
Confidence 33333344454444444445554 677899999993 6799999999999999999998888 999999999999988
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE--eCCeEEEEeCCCCccee
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT--AGAQVDIWNHNRSQPIN 197 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~ 197 (434)
.+.+|++|+.|.++++||..++.+... ...+.+.+.++...+. .+++ .+.+|++|++.++..+.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~------------l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~ 325 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHS------------LQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLN 325 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEE------------ecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEE
Confidence 788999999999999999988854322 2234455555555433 4444 45679999999999999
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.+.+|.+.|.++..+ + .++++|+.||+|++||+.+.+....+ .+|...|.++
T Consensus 326 l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl-------------------------~gH~~~V~sl 377 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSL-------------------------SGHTGRVYSL 377 (537)
T ss_pred EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeee-------------------------cCCcceEEEE
Confidence 999999999999998 3 78999999999999999977666554 5899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCC-eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGG-RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
.+.+. ..+++|+.|++|++||+++. +++..+..+. +-+.++.+ .+++|++++.||.|++||..+++++.++..+
T Consensus 378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred EecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc-cccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence 88665 89999999999999999999 7777775543 55555544 6789999999999999999999999988764
No 87
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=213.99 Aligned_cols=250 Identities=15% Similarity=0.267 Sum_probs=206.4
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
.+|+...+.++|.|+| ..|++++.||.|++|+..+. +.-..+..+...|.+++.. +.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 4799999999999999 89999999999999997765 3333444477788877764 458999999999999999877
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
. .........-++..++++.+|.+++.++.+ |++.+.........+.+|.++|.++.|+|.+ ++|
T Consensus 87 ~------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-~fL 153 (933)
T KOG1274|consen 87 E------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-NFL 153 (933)
T ss_pred C------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-CEE
Confidence 3 333455566788899999999999999865 9999999999999999999999999999998 899
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
|+.+.||.|++||+.++.....+...... .-......+..++|+|+|..|+..+.|+.|.+|+
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~-----------------n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKD-----------------NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCcc-----------------ccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 99999999999999987666544211000 0001145677899999988888888899999999
Q ss_pred CCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 300 YNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
..+......+...+ .+.+.++.|+|+|.|||+++.||.|.|||+++
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99998887775544 34499999999999999999999999999987
No 88
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.2e-27 Score=186.86 Aligned_cols=309 Identities=18% Similarity=0.231 Sum_probs=212.2
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc----------eeEE-----eeccCCCee
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----------TVCQ-----YSGHQGAVR 113 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~----------~~~~-----~~~h~~~v~ 113 (434)
++..+.-.+-...-..|.+.|+++...+.-+.++++|+.||.|.+||+++.. .... -.+|.-.|.
T Consensus 26 Ril~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is 105 (397)
T KOG4283|consen 26 RILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS 105 (397)
T ss_pred hhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence 3334433344444578999999999999766999999999999999997543 1111 135788999
Q ss_pred EEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC---EEEEeC--CeEEE
Q 013873 114 GLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFATAG--AQVDI 187 (434)
Q Consensus 114 ~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~i~i 187 (434)
.+.|-| |.-.+.+++.|.++++||.++. +....+.....+++-+++|-.. +++++. -.|++
T Consensus 106 s~~WyP~DtGmFtssSFDhtlKVWDtnTl-------------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTL-------------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL 172 (397)
T ss_pred eeEEeeecCceeecccccceEEEeecccc-------------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence 999999 5568889999999999999876 3445555667777777777432 455554 35999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC--cccee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL--DEAKC 265 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 265 (434)
-|+.+|.....+.+|.+.|.++.|+|....+|++|+.||.|++||++...-.. ...|..+. .+...
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf------------~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF------------RVLDQHNTKRPPILK 240 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee------------EEeecccCccCcccc
Confidence 99999999999999999999999999998999999999999999998653222 12222221 12222
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe--ccC---Cc-cEEEEEEcCCCCEEEEeeCCCcEE
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--TKR---MQ-RVFCVKFSCDASYVISGSDDTNLR 339 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~---~~-~v~~~~~s~~~~~l~s~~~dg~v~ 339 (434)
....|.+.+++++|+.+|.++++++.|..+++|+..+|....... ..+ .+ .+. +. +.+...++---.++.+.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~la 318 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLA 318 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEE
Confidence 356899999999999999999999999999999998876432211 001 01 111 11 22333333333445666
Q ss_pred EeecCcccccccCChhhhhhh--HHHHHHHHhhccchhhhhhhhccC
Q 013873 340 LWKAKASEQLGVLHPREQRKH--AYHEAVKNRYKHLPEIKRIVRHRH 384 (434)
Q Consensus 340 vw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 384 (434)
++++-++..+..+..+..+.. .|...+++.+.-....+...|.|.
T Consensus 319 ll~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 319 LLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 666666666655554422221 233344455555555566666663
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=214.69 Aligned_cols=262 Identities=19% Similarity=0.294 Sum_probs=214.6
Q ss_pred ccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeEEeeccCCCeeEEEE-cCCCCeEEEeeCC
Q 013873 54 FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGLTV-STDGRILVSCGTD 130 (434)
Q Consensus 54 ~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~i~~-~~~~~~l~s~~~d 130 (434)
...+++..++.|.+.|+.++...++ ..|+++|.|-+|++|+...+ -+..++..|...|.|+++ .++...+|+||-|
T Consensus 61 ~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD 139 (735)
T KOG0308|consen 61 PSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLD 139 (735)
T ss_pred cccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCC
Confidence 3456788999999999999999998 89999999999999999877 466778899999999999 7788899999999
Q ss_pred CcEEEeeCCCCCC--CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCce
Q 013873 131 CTVKLWNVPVATL--TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTV 206 (434)
Q Consensus 131 g~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i 206 (434)
+.|.+||++++.. +.++..... .-.......++++++..+.|.++++|+ +.+++||.++++.+..+++|...|
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~---~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNV 216 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTV---NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNV 216 (735)
T ss_pred ccEEEEEccCcchhhhhhcccccc---ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccce
Confidence 9999999998732 222221111 111115677899999999999998888 569999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
.++..+++| ..++++++||+|++||+....+..++. .|...|+++..+|+-..+
T Consensus 217 r~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~-------------------------vH~e~VWaL~~~~sf~~v 270 (735)
T KOG0308|consen 217 RVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYI-------------------------VHKEGVWALQSSPSFTHV 270 (735)
T ss_pred EEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEE-------------------------eccCceEEEeeCCCcceE
Confidence 999999999 788899999999999999887776653 688889999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
++|+.||.|..=|+++......+.. ...+|..+..+....-+-+++.|+.|+-|...-.
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999999999988533333222 2257777777754444566778899999987543
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=201.87 Aligned_cols=279 Identities=18% Similarity=0.281 Sum_probs=220.6
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE----E------------e--eccCCCeeEEEEcCC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC----Q------------Y--SGHQGAVRGLTVSTD 120 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----~------------~--~~h~~~v~~i~~~~~ 120 (434)
...+..|.-+|.|++++|++ .+.++++.+|+|.-|++.+++... . . .+|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 45667899999999999998 999999999999999998876331 0 1 268889999999999
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE--EeCCeEEEEeCCCCcceee
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA--TAGAQVDIWNHNRSQPINS 198 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~i~d~~~~~~~~~ 198 (434)
|+||++|+.|..|.||+.++.+.+ .....+...|.+++|-....-++ +.+..+.+|+++....+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv------------~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHV------------KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcccchh------------hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 999999999999999999888432 22355667788888876554444 4457799999999999999
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
+-+|++.|.++.....+ ..+.+|+.|+++++|++...... ++.+|.+.+-|++
T Consensus 282 lyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesql--------------------------ifrg~~~sidcv~ 334 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQL--------------------------IFRGGEGSIDCVA 334 (479)
T ss_pred HhCCccceeeechhccc-ceEEeccccceeEEEecccccee--------------------------eeeCCCCCeeeEE
Confidence 99999999999988766 67778889999999999443222 4458888999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC---C--------ccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR---M--------QRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~--------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
|-. ...|++|+.||.|.+|++...+++.+....| . ..|++++..|...++++|+.+|.|++|.+..+-
T Consensus 335 ~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred Eec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 974 4679999999999999999888877763332 1 278999999999999999999999999998772
Q ss_pred c-cccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 348 Q-LGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
. +..+ ..+...+-|+.++|.+.-..++...+
T Consensus 414 r~i~~l---------------~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 414 RAINLL---------------YSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ccccee---------------eecccccEEEEEEEccCCCEEEEecc
Confidence 2 2222 11234566788887776665554443
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=201.34 Aligned_cols=256 Identities=18% Similarity=0.285 Sum_probs=208.3
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC-CCCeEEEe
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSC 127 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~ 127 (434)
.+++..+...+.++.-..+.|.++.|-.|| .+||+|+..|.|+|||..+...+..+.+|+.+|..+.|+| ++..|++|
T Consensus 51 qly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 51 QLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred EEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence 344444555556666778999999999999 9999999999999999877777888999999999999999 55678889
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCC-cceeeeecCC
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRS-QPINSFQWGT 203 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~-~~~~~~~~~~ 203 (434)
+.|+.+++||+.+.. .......+..-+.+.+++|... ++++|+ |.|++||++.. ..+..+. |.
T Consensus 130 sDd~v~k~~d~s~a~------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg 196 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAY------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HG 196 (487)
T ss_pred CCCceEEEEEcCCcE------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CC
Confidence 999999999998763 2334556778899999999765 677776 67999999987 5555554 68
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
.+|.++.+.|.| .++++++. ..|++||+-++..... ....|...|+|+.+..++
T Consensus 197 ~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll~------------------------~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 197 CPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLLT------------------------SMFNHNKTVTCLRLASDS 250 (487)
T ss_pred CceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceehh------------------------hhhcccceEEEEEeecCC
Confidence 899999999988 67777664 5899999985543221 223599999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 284 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
..|++|+-|+.|++||+.+-+....+.-. ++|.+++.+|++..++.|..||.+.+=+....
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWKYP--GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeeecc--cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 99999999999999998887777766554 79999999999999999999999888754433
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.4e-27 Score=198.74 Aligned_cols=251 Identities=20% Similarity=0.318 Sum_probs=199.5
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
.+|...|.+++.++|| .+||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|++|++|+++...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 4899999999999999 999999999999999999999999999999999999999888899999999999999998763
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.....+.|...+..+....-+..+..++ .++++|++... ....+.++.+.+.|++|-.+. .|+
T Consensus 278 ------------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~--Hfv 342 (479)
T KOG0299|consen 278 ------------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE--HFV 342 (479)
T ss_pred ------------HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc--cee
Confidence 3445667788888888888888877775 56999999443 344567778899999998754 688
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+|+.+|.|.+|++...+++............. -...+...|++++..|..+++++|+.+|.|++|-+
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCc-------------cccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 99999999999999988876654322211100 00133468999999999999999999999999999
Q ss_pred CCCee-e-eEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEee
Q 013873 301 NGGRS-R-EIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWK 342 (434)
Q Consensus 301 ~~~~~-~-~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~ 342 (434)
..+-. + ..+...-.+-|++++|+++|++|++|. ....+-=|-
T Consensus 410 ~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 410 EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 88721 1 112222347899999999999766653 444444443
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-27 Score=187.81 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=216.7
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeC--CCcEEEEeCCCCceeEEeeccC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSM--DGDIRLWDIANRRTVCQYSGHQ 109 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~ 109 (434)
+++...............+++...+..+.++.-+.-.|..++|.... ..++.++. |.+|+..++.+.+.++.|.||.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryLsl~dNkylRYF~GH~ 100 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK 100 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEEEeecCceEEEcCCCC
Confidence 44444444444455567888888999999999999999999998776 66666665 8899999999999999999999
Q ss_pred CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEE
Q 013873 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDI 187 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i 187 (434)
..|.+|+.+|-+..+++++.|++|++||++..++... . ....-...++.|+|.++|++.+ .|.+
T Consensus 101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-------------l-~~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-------------L-NLSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-------------E-ecCCCcceeECCCCcEEEEecCCCeEEE
Confidence 9999999999889999999999999999986643221 1 1223345789999999999875 4999
Q ss_pred EeCCCC--cceeeeecC---CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 188 WNHNRS--QPINSFQWG---TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 188 ~d~~~~--~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
||++.- .+..++... ....+.+.|+|+| ..++.+...+.+++.|.-.+.....+....
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~---------------- 229 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYP---------------- 229 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeecc----------------
Confidence 999864 444444433 5678999999999 677777888999999988877555442111
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
....--...+|+||++++++|+.||+|.+|+++++.....+...+.+++.++.|+|...++++++ ..+.+|=
T Consensus 230 ------~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 230 ------NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred ------CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence 11111256789999999999999999999999999999998887778999999999888887765 4788886
Q ss_pred cCcc
Q 013873 343 AKAS 346 (434)
Q Consensus 343 ~~~~ 346 (434)
....
T Consensus 302 p~~~ 305 (311)
T KOG1446|consen 302 PDED 305 (311)
T ss_pred cccc
Confidence 6543
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.9e-28 Score=202.37 Aligned_cols=219 Identities=18% Similarity=0.324 Sum_probs=182.4
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
-.+.|.|++-+|.| .+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..--
T Consensus 80 ~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-- 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-- 156 (476)
T ss_pred cccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec--
Confidence 36789999999998 999999899999999999999999999999999999999999999999999999999974220
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCC-CcEEEEEe
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE-PNVLATTA 223 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~ 223 (434)
..+ +..+.+++..+..|.-+|+++...+.+ ...+++++
T Consensus 157 -----------------------------------~a~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 157 -----------------------------------SAD------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred -----------------------------------ccc------cCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 000 001446778888899999999988763 35799999
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
.|.++++||+..+..+.++ .....+.+++.+|-+..+++|+.+|.|.+.++...
T Consensus 196 ~D~t~k~wdlS~g~LLlti--------------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTI--------------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred CCceEEEEEeccceeeEEE--------------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 9999999999988666555 24668999999999999999999999999887532
Q ss_pred e----------------eeeEEeccCC-ccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 304 R----------------SREIYHTKRM-QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 304 ~----------------~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
. ....+.++.. ..|+|++++-||.+|++|+.||.|+|||+.+.++++++.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 2 1222333332 489999999999999999999999999999999887764
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6e-27 Score=187.05 Aligned_cols=258 Identities=17% Similarity=0.235 Sum_probs=198.2
Q ss_pred HHHHHhhhhccc-cc-cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 45 LTAAKLEKIFAR-PF-IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 45 ~~~~~~~~~~~~-~~-~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
.+.+++|.+... .+ -+....|.++|.+++|+.+| ..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+...
T Consensus 49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred CCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC
Confidence 456778877652 22 25568899999999999999 999999999999999999995 456678999999999988555
Q ss_pred --eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceee-e
Q 013873 123 --ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINS-F 199 (434)
Q Consensus 123 --~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~ 199 (434)
.|+||+.|.+|+.||.+.. .++........+++++.-..-..+++++..|.+|+++.+..... .
T Consensus 127 ~~cl~TGSWDKTlKfWD~R~~-------------~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~ 193 (347)
T KOG0647|consen 127 YQCLVTGSWDKTLKFWDTRSS-------------NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRI 193 (347)
T ss_pred cceeEecccccceeecccCCC-------------CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhh
Confidence 8999999999999999855 55666666777888887777778888889999999976533221 1
Q ss_pred ec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 200 QW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 200 ~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
.. -.-.+.|++..++. ..++.|+-+|.+.+..+....+...+.+........ ..+.--.|++|+
T Consensus 194 ~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~--------------~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 194 ESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS--------------VNDDVYAVNSIA 258 (347)
T ss_pred cCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCC--------------CCCceEEecceE
Confidence 11 23467899998887 456899999999999998875554443322211000 001123688999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
|+|.-..|+|+|.||++.+||-+....+.....+. .+|++.+|+.+|.+++.+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~-qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP-QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCC-CccceeEecCCCCEEEEEe
Confidence 99998999999999999999998777666655444 8999999999999887653
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=184.35 Aligned_cols=250 Identities=20% Similarity=0.267 Sum_probs=196.4
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC---ceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEEEe
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~iw 136 (434)
-..|.+.|..+...--| ..|||++.|++|+|+..++. +.+.+|.+|.++|+.++|.. -|.+|++|+.||.|.||
T Consensus 7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 46799999998888777 89999999999999998765 45778999999999999976 89999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC--CEEEEeC--CeEEEEeCCCC---cceeeeecCCCceEEE
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAG--AQVDIWNHNRS---QPINSFQWGTDTVISV 209 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~i~i~d~~~~---~~~~~~~~~~~~i~~i 209 (434)
.-..++. .+......+...+++++|.|.+ .+|++++ |.|.|.+.+.. ........|.-.++++
T Consensus 86 ke~~g~w----------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 86 KEENGRW----------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ecCCCch----------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 9888765 2344445667888999998864 4555554 77888876654 2234456788899999
Q ss_pred EEcCC---C----------CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 210 RFNPA---E----------PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 210 ~~~~~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
+|.|. | ...|++|+.|..|+||+.....-. ....+.+|...|..
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRD 212 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhh
Confidence 99986 2 145999999999999998765321 12235689999999
Q ss_pred EEEccCC----CEEEEEeCCCcEEEEeCCCC--eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 277 IDYSPTG----REFVTGSYDRTIRIFQYNGG--RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 277 ~~~sp~~----~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
++|.|.- .+||+|+.||+|.||..+.. .....+...-...+..+.||..|++|++++.|+.|.+|.-..
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9999953 46999999999999987632 112222222336799999999999999999999999998653
No 97
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1e-26 Score=190.38 Aligned_cols=256 Identities=22% Similarity=0.319 Sum_probs=205.2
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (434)
++|.....+........-+|++.++++...+.||.+.|+|+.|+.+| .+||||+.+|.|.||+..++.....+...-..
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~d 150 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVED 150 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCc
Confidence 44444444445555566789999999999999999999999999999 99999999999999999999988888766678
Q ss_pred eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEe
Q 013873 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (434)
+.-+.|+|-+..|+.|+.||.+-+|.+.+. ..+.....+..++.+-.+.|+|+.++++. |+|++|+
T Consensus 151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQ------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred eEEEEecccccEEEeecCCCcEEEEECCCc------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 888999999999999999999999999875 23444555677888999999999998885 7899999
Q ss_pred CCCCcceeeeecC---------------------------------------------------CCceEEEEEcCCC--C
Q 013873 190 HNRSQPINSFQWG---------------------------------------------------TDTVISVRFNPAE--P 216 (434)
Q Consensus 190 ~~~~~~~~~~~~~---------------------------------------------------~~~i~~i~~~~~~--~ 216 (434)
+.+++++..+... ...+.|+.+.|.. -
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 9998877665510 0011112222211 1
Q ss_pred cEEEEEecCCcEEEEEccCCCcce----------------EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 217 NVLATTASDRSITLYDLRMSSPAR----------------KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
.++++|+.||+|.|||+.....-. ..++.+..++.++.||.+. +..+..+.+|...|.+++++
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred chhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc-cceEEEEecCchheeEEEEc
Confidence 368889999999999987653222 2345588899999999986 46677888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCC
Q 013873 281 PTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 281 p~~~~l~~~~~d~~i~iwd~~ 301 (434)
|+.++++|+|.|++.+||+..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=207.34 Aligned_cols=246 Identities=22% Similarity=0.389 Sum_probs=204.2
Q ss_pred CCCCCeE---EEEeCCCCCceEEeeeCCCcEEEEeCCCCc------eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 64 GHRDGIS---CMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 64 ~h~~~V~---~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
.|...|. .+..+..+.++|+|||.||.|++|+..... ....++.|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555666 556666655889999999999999986432 3667889999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEee-ccCCCEEEEeC--CeEEEEeCCCCcc--e--------eeee-
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH-QWEGDLFATAG--AQVDIWNHNRSQP--I--------NSFQ- 200 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~i~i~d~~~~~~--~--------~~~~- 200 (434)
+|+...... ......-.|..-+.+++. .++..+++++| +.|.+||++++.. + ..+.
T Consensus 99 ~W~~~~~~~----------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 99 VWNAHKDNT----------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred EeecccCcc----------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 999876531 112223345667888888 77778888887 5699999997722 2 2223
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
++...|++++.++.+ .+|++|+..+.+++||.++.....++ .+|+..|..+..+
T Consensus 169 G~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkL-------------------------rGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKL-------------------------RGHTDNVRVLLVN 222 (735)
T ss_pred CCccceeeeecCCcc-eEEEecCcccceEEeccccccceeee-------------------------eccccceEEEEEc
Confidence 667889999999988 89999999999999999988776655 4999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 281 PTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 281 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+||..+++++.||+|++||+...+++.++..|. ..|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999987766 55999999999999999999999999998874
No 99
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=9.1e-27 Score=191.57 Aligned_cols=198 Identities=22% Similarity=0.450 Sum_probs=171.4
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC-------------------------CCceeEEeeccCCCeeEEEE
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA-------------------------NRRTVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~-------------------------~~~~~~~~~~h~~~v~~i~~ 117 (434)
.||...|-++...++| ..+++|+.|.+|.||+.. ++.++..+.+|.++|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 5999999999999999 999999999999999932 12356678899999999999
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCc-
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQ- 194 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~- 194 (434)
++ ...+++++.|.+|+.||+.++. ..........+.+++.++...++++++.+ +++||.+++.
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~-------------~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGG-------------LKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cC-CCceEeecccceEEEEEeeccc-------------ceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 98 5689999999999999999884 34445556788999999999999998854 9999998763
Q ss_pred --ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 195 --PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 195 --~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
....+.+|.+.|.++.|+|...+.|++|+.|+++++||+|... ++..+ .+|.
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-------------------------~~h~ 389 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-------------------------AGHN 389 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-------------------------ccCC
Confidence 4577889999999999999999999999999999999999876 54443 4899
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
..|.++.|+ ++.++++||.|++|+|+.-.
T Consensus 390 DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 390 DKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999997 56799999999999998643
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.9e-26 Score=182.09 Aligned_cols=247 Identities=17% Similarity=0.317 Sum_probs=198.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
-.+.|+.+.|+|.+ +.|++++.||++++||.........+. |..++.+++|.++ ..+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--- 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--- 85 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC---
Confidence 36889999999988 788888899999999999887666666 8999999999875 57999999999999999877
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
.......|..++.++...+....+++++ +.|.+||.+.......+.. ...|.++.... +.|++|
T Consensus 86 ----------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g---~~LvVg 151 (323)
T KOG1036|consen 86 ----------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSG---NRLVVG 151 (323)
T ss_pred ----------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccC---CEEEEe
Confidence 4555667788999999998888888776 6799999998666666655 34788888763 678899
Q ss_pred ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 223 ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 223 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
+.|..+.+||+++.....+. ....-.-.+.|+++-|++.-+++++-||.|.+=.++.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~-----------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQR-----------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred ecCceEEEEEcccccchhhh-----------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCC
Confidence 99999999999976544321 0112345688999999888899999999988866655
Q ss_pred C----eeeeEEeccC--------CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 303 G----RSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 303 ~----~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
. .....+..|. .-+|++++|+|-...|+||+.||.|.+||+.+.+.+..+..
T Consensus 209 s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 209 SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 4 2233333332 12799999999999999999999999999999988877753
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.9e-28 Score=194.07 Aligned_cols=274 Identities=17% Similarity=0.232 Sum_probs=225.4
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccc--------cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGAL--------DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC 103 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 103 (434)
+.|..+.+.......-+.+|+..++.+...| --|.++|.|+.|+.|. ..||+|+.||.|++|.+.+|.+++
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecchHHH
Confidence 5566666655666666778888777765444 3478999999999998 999999999999999999999999
Q ss_pred Eee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC
Q 013873 104 QYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (434)
Q Consensus 104 ~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
.|. .|+..|+|+.|+.|+..+++++.|.++++.-+.++++...+. .+.+-+....|.++|..+++++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr------------GHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR------------GHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc------------CccccccceEEcCCCCeEEEec
Confidence 986 899999999999999999999999999999999886654433 3345667788999999888876
Q ss_pred --CeEEEEeCCCCcceeeeecC--CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 183 --AQVDIWNHNRSQPINSFQWG--TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 183 --~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
|+|++|+..+.+++.+++.. .-+|.++...|..+..++++....+|.+.++... ..+.+.. +
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsS-G------------ 433 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSS-G------------ 433 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeecc-C------------
Confidence 67999999999999888753 4578899999999889999999999999987532 2222210 0
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcE
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 338 (434)
....+...+.+.||.|.++++.+.|+.++.|.+.+|++...+..+. ..+..++-+|..+.|++-+.||.+
T Consensus 434 ---------kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 434 ---------KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred ---------CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-ccccccccCcccchhhhhcccchh
Confidence 0123455677899999999999999999999999999888876655 678899999999999999999999
Q ss_pred EEee
Q 013873 339 RLWK 342 (434)
Q Consensus 339 ~vw~ 342 (434)
++|.
T Consensus 504 KLWk 507 (508)
T KOG0275|consen 504 KLWK 507 (508)
T ss_pred hhcC
Confidence 9996
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=6.6e-27 Score=187.56 Aligned_cols=257 Identities=15% Similarity=0.223 Sum_probs=206.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee---EEeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV---CQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
.|++++|-.|.+.|+++.|+|.. .+|++|+.|++|++||+...... +.++ ...+|.+|.|+|.|.+|+.|....+
T Consensus 162 hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred CceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCc
Confidence 37899999999999999999998 99999999999999998764332 2233 4578999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeec-C-CCceEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW-G-TDTVIS 208 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~-~~~i~~ 208 (434)
+++||+++.++.... .--..+...++++.+++.+.+.++++ |.|++||--+++++.++.. | ...|.+
T Consensus 240 ~rlYdv~T~Qcfvsa---------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSA---------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred eeEEeccceeEeeec---------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee
Confidence 999999887553221 11224567899999999999999987 6799999999999988864 3 457889
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
..|..++ .++++.+.|..+++|.+.++.++..+...+... ...--+...|+....|++.
T Consensus 311 a~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg--------------------rq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 311 AVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG--------------------RQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred EEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCccc--------------------chhhhhhhhhcCccceEEc
Confidence 9999988 899999999999999999998887765432211 1111223446666666554
Q ss_pred Ee-CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 289 GS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 289 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
-. ..+.+.-||.++......+..+|.+.+..+.-||.+.-+++|+.|-.+++|--.
T Consensus 370 pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 43 356789999999988888888888999999999999999999999999999754
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=202.57 Aligned_cols=263 Identities=19% Similarity=0.251 Sum_probs=209.6
Q ss_pred EEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCC
Q 013873 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS 149 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 149 (434)
+-+.|+.. +.||.|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+.......
T Consensus 181 nlldWss~--n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 181 NLLDWSSA--NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hHhhcccC--CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 34668854 5677665 45799999999987666665689999999999999999999999999999987754332221
Q ss_pred CCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCcEEEEEecCC
Q 013873 150 TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLATTASDR 226 (434)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg 226 (434)
.+...+-+++|. +..+.++. +.|..+|++..+.... +.+|...|..+.|++++ .+|++|+.|+
T Consensus 258 -----------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN 323 (484)
T KOG0305|consen 258 -----------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDN 323 (484)
T ss_pred -----------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCcc
Confidence 156677788887 44555554 6799999998877666 88899999999999999 8999999999
Q ss_pred cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEe--CCCcEEEEeCCCC
Q 013873 227 SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGS--YDRTIRIFQYNGG 303 (434)
Q Consensus 227 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~--~d~~i~iwd~~~~ 303 (434)
.+.|||.....+...+ ..|.+.|..++|+| ...+||+|+ .|++|++||..++
T Consensus 324 ~~~Iwd~~~~~p~~~~-------------------------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 324 VVFIWDGLSPEPKFTF-------------------------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ceEeccCCCccccEEE-------------------------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 9999999666555544 58999999999999 567888875 5999999999999
Q ss_pred eeeeEEeccCCccEEEEEEcCCCCEEEE--eeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhh
Q 013873 304 RSREIYHTKRMQRVFCVKFSCDASYVIS--GSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVR 381 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 381 (434)
..+...... +.|..|.|++..+-|++ |..++.|.||+..+.+.+..+. +|...|..+++
T Consensus 379 ~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-----------------gH~~RVl~la~ 439 (484)
T KOG0305|consen 379 ARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-----------------GHTSRVLYLAL 439 (484)
T ss_pred cEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-----------------CCcceeEEEEE
Confidence 988887666 78999999998876665 4467899999999977776664 56666777888
Q ss_pred ccCCChHHHHHH
Q 013873 382 HRHLPKPIYKAA 393 (434)
Q Consensus 382 ~~~~~~~~~~~~ 393 (434)
.|....++..++
T Consensus 440 SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 440 SPDGETIVTGAA 451 (484)
T ss_pred CCCCCEEEEecc
Confidence 888665554443
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8e-25 Score=168.02 Aligned_cols=243 Identities=22% Similarity=0.386 Sum_probs=189.2
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce-----eEEeeccCCCeeEEEEcCC----CCeEEEeeC-CC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRGLTVSTD----GRILVSCGT-DC 131 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~i~~~~~----~~~l~s~~~-dg 131 (434)
-+.|.+.|.|.+|+|.| .++++|+.|.+|++.-++.... -..|.-|.+.|..++|..+ +..|++++. |.
T Consensus 85 ~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 36789999999999999 9999999999999976654322 2356779999999999653 446666543 55
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeec-------C
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQW-------G 202 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~-------~ 202 (434)
.|.+-|...+ .....+..+..-.-..+++++.++++++. +|++||++-..++..+.. .
T Consensus 164 ~iy~tdc~~g-------------~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 164 KIYITDCGRG-------------QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred eEEEeecCCC-------------CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 5666665554 23333333333333346778889998874 599999998888776643 2
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
.+.|.+++..|.| .+|++|..|....+||++.+.+++.+ .+|...|.++.|||.
T Consensus 231 ssavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f-------------------------~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 231 SSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRF-------------------------HPHSADIRCVRFSPG 284 (350)
T ss_pred cceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeee-------------------------CCCccceeEEEeCCC
Confidence 3679999999998 89999999999999999998877655 489999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC---eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 283 GREFVTGSYDRTIRIFQYNGG---RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
..|+++|+.|..|++-|++.. ++.......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999999753 22233344555778889999988889999999999999764
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=208.07 Aligned_cols=209 Identities=20% Similarity=0.312 Sum_probs=173.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVK 134 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~ 134 (434)
...+..|.||.+.|..+.|+.+ ++|++++.|.+|++|++....+++.|. |..-|+|++|+| |.+||++|+-||.|+
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence 3456789999999999999998 789999999999999999999999987 999999999999 888999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC--------CC
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--------TD 204 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--------~~ 204 (434)
||++... ..........-|+++++.|+|...+.|. |.+++|+....+....+..+ ..
T Consensus 436 iWsI~d~-------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 436 LWSISDK-------------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EeecCcC-------------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999765 3444455567899999999999888886 88999999887766544321 23
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.|+.+.|.|..+..+++.+.|..|+|||.+....+.++.... ....-....|+.||+
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-----------------------n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-----------------------NTSSQISASFSSDGK 559 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-----------------------cCCcceeeeEccCCC
Confidence 799999999887778889999999999998777666542110 112234567899999
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 013873 285 EFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~ 303 (434)
+|++++.|..|++|++...
T Consensus 560 ~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEEeecCceEEEEeCCCC
Confidence 9999999999999998543
No 106
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=9.8e-27 Score=195.91 Aligned_cols=261 Identities=15% Similarity=0.230 Sum_probs=193.9
Q ss_pred ccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--
Q 013873 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG-- 182 (434)
Q Consensus 107 ~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 182 (434)
.|.+.|+.+.+.|. ...+++.+..+.|.|||.....-...... .....+.+..+...-++++|++... .+++++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEeeccCC
Confidence 48899999999994 45677788899999999876543322211 1122334455555567788887544 333333
Q ss_pred CeEEEEeCCCC-------cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 183 AQVDIWNHNRS-------QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 183 ~~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
+.|.+||++.. .+...+.+|...|..++|++....+|++++.|+.+.|||+|....
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~----------------- 262 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS----------------- 262 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-----------------
Confidence 46999998754 245678889999999999999989999999999999999996311
Q ss_pred eCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEee
Q 013873 256 DSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGS 333 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~ 333 (434)
.+.....+|.+.|+|++|+| ++..||+|+.|++|.+||+++.........+|...|.+|.|+| ....||+++
T Consensus 263 ------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 263 ------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred ------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 11123358999999999999 5667999999999999999987654444455668999999999 556889999
Q ss_pred CCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHHHH
Q 013873 334 DDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASL 395 (434)
Q Consensus 334 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 395 (434)
.|+.+.|||+..-...+. .+...-...+.+...-+|...|..+.|+|..|..+.+..++
T Consensus 337 ~D~rl~vWDls~ig~eq~---~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred cCCcEEEEeccccccccC---hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 999999999976444332 22222333445556678999999999999999988776654
No 107
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=6e-26 Score=191.17 Aligned_cols=265 Identities=18% Similarity=0.269 Sum_probs=204.9
Q ss_pred ccccCCCCCeEEEEeCCCCC-ceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcE
Q 013873 60 GALDGHRDGISCMAKNPNYL-KGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTV 133 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v 133 (434)
....-|...|++++|+|... .++|+|+..|+|-+||+.+. ..+..+..|.++|.++.|+| +...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 44567899999999999864 78999999999999999532 23556788999999999999 55689999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc-eeeeecCCCceEEEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP-INSFQWGTDTVISVR 210 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~-~~~~~~~~~~i~~i~ 210 (434)
++-|++........ ........+.++.++.+...++.++ |...+||++++.. ...+..|...|.+++
T Consensus 260 R~~D~~~~i~e~v~----------s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 260 RLQDFEGNISEEVL----------SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeeeecchhhHHHh----------hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 99999876432111 1112234566777877777766666 6799999998765 677778888999999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
++|..+.+|+|++.|++.+|||++....... +......|...|.+..|||.+-.|+|.+
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCC---------------------cceecccccceeeeeEEcCCCCceEeec
Confidence 9999999999999999999999986544332 1112347999999999999888899999
Q ss_pred CCCcEEEEeCC----CCeeeeEEeccC-C---ccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 291 YDRTIRIFQYN----GGRSREIYHTKR-M---QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 291 ~d~~i~iwd~~----~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
.|..|+|||.. ...+...+...+ . -......|.|+..+|++|-.-..|-|+|-..++.+..+..+
T Consensus 389 ~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 389 QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 99999999983 222222221111 1 23446789999999999999999999999999877776543
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=211.50 Aligned_cols=234 Identities=19% Similarity=0.351 Sum_probs=183.6
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCC---CceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIAN---RRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
.+..+.|+.-..++|||++..|.|.+||+.. .+.+..|..|...+++++|++ ...+|++|+.||+|++||++...-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4566778865568999999999999999987 566677889999999999998 556899999999999999975532
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
..++.+....|..+.|+|..++.|+++.
T Consensus 169 ----------------------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 169 ----------------------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ----------------------------------------------------cccccccchhhhceeeccCCCceEEEec
Confidence 2233445778999999999889999999
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
..|.+++||+|...... ..+.+|.++|.++.|+|++.+|||||.|+.|+|||+.++
T Consensus 197 dsG~lqlWDlRqp~r~~------------------------~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCE------------------------KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred CCceEEEeeccCchhHH------------------------HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 99999999998664332 234589999999999999999999999999999999877
Q ss_pred eeeeEEeccCCccEEEEEEcCCCCE-EEEee--CCCcEEEeecCcccc-cccCChhhhhhhHHHHHHHHhhccchhhhhh
Q 013873 304 RSREIYHTKRMQRVFCVKFSCDASY-VISGS--DDTNLRLWKAKASEQ-LGVLHPREQRKHAYHEAVKNRYKHLPEIKRI 379 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 379 (434)
+...........+|.+|.|-|..++ |++++ .|-.|+|||+...-. ..++ ..|.+.+..+
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~-----------------~eH~~~vt~i 315 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF-----------------LEHTDSVTGI 315 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee-----------------eccCccccce
Confidence 6655554455589999999997665 55554 488899999964321 1111 2577788888
Q ss_pred hhccCCChHHHHHHH
Q 013873 380 VRHRHLPKPIYKAAS 394 (434)
Q Consensus 380 ~~~~~~~~~~~~~~~ 394 (434)
+|....+..+...++
T Consensus 316 ~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSK 330 (839)
T ss_pred eccCCCceeeEeecC
Confidence 887766654444443
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=190.38 Aligned_cols=258 Identities=20% Similarity=0.326 Sum_probs=189.7
Q ss_pred cccCCCCCeEEEEeCCCC-CceEEeeeCCCcEEEEeCCC----------------CceeEEeeccCCCeeEEEEcCC-CC
Q 013873 61 ALDGHRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIAN----------------RRTVCQYSGHQGAVRGLTVSTD-GR 122 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~i~~~~~-~~ 122 (434)
..-+|.+.++.+.-++-+ ..+.++-+..|.|.|||+.. .+++.++.+|...=++++|+|- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 445788888888877764 35666778899999999752 2567788899999999999992 23
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecC
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 202 (434)
.|++|.--+.|++|...++.... . ...+.+|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~v---------------------------------------------d----~~Pf~gH 256 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKV---------------------------------------------D----QRPFTGH 256 (440)
T ss_pred ccccCccccceEeeeeccCceee---------------------------------------------c----Ccccccc
Confidence 58888888899999986653210 0 1234458
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
...|..++|+|....+|++|+.||+|+|||+|.......+ ....|.+.|+-|.|+.+
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-----------------------~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-----------------------STKAHNSDVNVISWNRR 313 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-----------------------EeeccCCceeeEEccCC
Confidence 8999999999999999999999999999999987443332 22589999999999998
Q ss_pred CCEEEEEeCCCcEEEEeCCC---CeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 283 GREFVTGSYDRTIRIFQYNG---GRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
..+||+|+.||+++|||++. ++++..+.. |..+|+++.|+| +...|++++.|..|.+||+....-..........
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~ 392 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE 392 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccccc
Confidence 88999999999999999975 445555544 458999999999 5567888889999999998654331111110000
Q ss_pred hh-HHHHHHHHhhcc--chhhhhhhhccCCChHHHHHH
Q 013873 359 KH-AYHEAVKNRYKH--LPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 359 ~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 393 (434)
.+ ...+.+ .+-| ..++..+.||+..|..+.+..
T Consensus 393 ~L~dlPpQL--LFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 393 GLQDLPPQL--LFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred chhcCCcee--EEEecchhHhhhheeccCCCCeEEEec
Confidence 00 001111 1344 567999999999998775543
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-25 Score=198.84 Aligned_cols=250 Identities=20% Similarity=0.352 Sum_probs=203.3
Q ss_pred HHhhhhcccccc--ccccCCCCCeEE-EEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE
Q 013873 48 AKLEKIFARPFI--GALDGHRDGISC-MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 48 ~~~~~~~~~~~~--~~l~~h~~~V~~-~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
.++|.-....++ ..+.+|.+-|.+ ++|.+.....|++|+.|++|.+|...+..++..+.+|...|.|++...++. +
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~ 115 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L 115 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence 455655555554 356889999988 888864335699999999999999999999999999999999999888876 9
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (434)
++|+.|.++++|...... .....|...++++..-|++ .+++++ ..|++|.- ++.+.+|.+|
T Consensus 116 iSgSWD~TakvW~~~~l~--------------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 116 ISGSWDSTAKVWRIGELV--------------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred EecccccceEEecchhhh--------------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc
Confidence 999999999999875432 1245677889999999988 555555 45999965 7889999999
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
.+.|..+++.+++ .|++++.||.|++|++ ++..+. .+.+|++-|++++..++
T Consensus 179 tD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l~-------------------------~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVLL-------------------------EMHGHTNFVYSISMALS 230 (745)
T ss_pred hhheeeeEEecCC--CeEeecCCceEEEEec-cCceee-------------------------eeeccceEEEEEEecCC
Confidence 9999999999975 4889999999999999 343333 33489999999998888
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+..+++++.|++++||+.. .+...+..+. ..|+++.+-++|. |++|++||.|+||.....+
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt-tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPT-TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCeEEEecCCceEEEeecC--ceEEEEecCc-cceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 8999999999999999987 4545553332 5799999998887 7778899999999887543
No 111
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=176.45 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=198.6
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (434)
-.|+.|++-| .+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|+|++.|..|.+||+..+.....+.
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999 999999999999999999999888899999999999999999999999999999999998887654332
Q ss_pred CCCC----------CCCceeEEE--------ecCce----------------EEEeeccCCCEEEEeC--CeEEEEeCCC
Q 013873 149 STDN----------SSEPLAVYV--------WKNSF----------------WAVDHQWEGDLFATAG--AQVDIWNHNR 192 (434)
Q Consensus 149 ~~~~----------~~~~~~~~~--------~~~~~----------------~~~~~~~~~~~~~~~~--~~i~i~d~~~ 192 (434)
.... ....+.... ...++ .+..+.+.|+++++|. |.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 2110 000000000 00000 1123566788888887 5699999999
Q ss_pred CcceeeeecCC-CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee--C
Q 013873 193 SQPINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM--G 269 (434)
Q Consensus 193 ~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 269 (434)
.+++..++... ..|..+.++-.| ..|+.-+.|..|+.|+++.-....+- ....+.+.+. -
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~----------------~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRD----------------GEVEPEHKLQDVV 247 (405)
T ss_pred heeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCcc----------------CCcChhHHHHHHH
Confidence 99998887765 778899999888 78889999999999998732111000 0000000000 0
Q ss_pred cccCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 270 HESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
....=.+++||.+|.|++.++. -..++||....|.++..+++........+.|+|-...+++- ..|.|++|....-..
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 1123356889999999887774 34699999999999999988776778899999998888877 678999999876665
Q ss_pred cccCChh
Q 013873 349 LGVLHPR 355 (434)
Q Consensus 349 ~~~~~~~ 355 (434)
-..|.|.
T Consensus 327 wsafAPd 333 (405)
T KOG1273|consen 327 WSAFAPD 333 (405)
T ss_pred hhhcCch
Confidence 5555443
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.5e-25 Score=190.89 Aligned_cols=263 Identities=19% Similarity=0.347 Sum_probs=207.4
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC---ceeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
.|.+-|.++..+... .+++||+. |-|+|||+... .++..+. .....|.++...|||+.|++||.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 488889999999887 89999996 67999998643 2333333 24567999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
........ .........+++++.+||.++.+++. |.|.|||+.+...+..|++|.+.+.||.++++|
T Consensus 495 AapTprik----------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG- 563 (705)
T KOG0639|consen 495 AAPTPRIK----------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG- 563 (705)
T ss_pred cCCCcchh----------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-
Confidence 76643211 11111223567889999998877654 789999999999999999999999999999999
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEE-----------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKV-----------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
..|.+|+.|.+|+.||++........ ...+-.++.+.+..... .....+.-|...|.++.|
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKF 641 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC--ccceeecccccEEEEEEe
Confidence 78899999999999999987554332 22234444444443332 333445578999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 280 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 280 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.+.|+++++.+.|+.+..|...-|..+. .....++|.++.+|.|.+||+||+.|....||.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiF--qskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCcccccee--eccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999988887554 4445589999999999999999999998888875
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.2e-25 Score=185.29 Aligned_cols=267 Identities=14% Similarity=0.285 Sum_probs=212.9
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~ 142 (434)
.++|+++.|+|.. .+|++|+.||+++||.+... ..++.+.-...+|.+.+|.|+|. .+++++.-..++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 5789999999998 89999999999999987643 45666666678999999999999 89999999999999998887
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
........... ...+..+.+++++.+++..| |-|.+....+++.+.+++. .+.|..++|+.++ ..|+
T Consensus 292 ~~k~~~~~g~e---------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSds-k~l~ 360 (514)
T KOG2055|consen 292 VTKLKPPYGVE---------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDS-KELL 360 (514)
T ss_pred cccccCCCCcc---------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCC-cEEE
Confidence 64332211111 33566788899999999988 5699999999999988886 6889999999988 6677
Q ss_pred EEecCCcEEEEEccCCCcceEE-------------------EeeecCceeEEEeeCCC-----CccceeeeeCcccCeEE
Q 013873 221 TTASDRSITLYDLRMSSPARKV-------------------IMRANEDCNCYSYDSRK-----LDEAKCVHMGHESAVMD 276 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~ 276 (434)
+.+.+|.|.+||++...+.+++ ...++..+.+-+|+... ...++..+..-...|++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 7778899999999988665554 34477777777888443 23445555566778999
Q ss_pred EEEccCCCEEEEEeC--CCcEEEEeCCCCeeeeEEecc--CCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 277 IDYSPTGREFVTGSY--DRTIRIFQYNGGRSREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
++|+||++.||.++. +..+++-.+.+......+... ..+.|+|++|+|.|.+||.|..+|.|.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999888774 677999988877665555332 24679999999999999999999999999874
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.4e-25 Score=193.73 Aligned_cols=287 Identities=15% Similarity=0.236 Sum_probs=210.1
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee---EEeeccCCCeeEEEEcCC-----------CCeEEEeeCCCc
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV---CQYSGHQGAVRGLTVSTD-----------GRILVSCGTDCT 132 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~-----------~~~l~s~~~dg~ 132 (434)
....++.|++.. ..|.+...|..++|||+++-..+ ..+--|...|+++.-.|. ...|++|+.|++
T Consensus 325 PD~IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 325 PDAIACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred CceeEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 456678899987 88999999999999999875433 334458888888876551 136899999999
Q ss_pred EEEeeCCCCCCCCCCCC-------------------------CCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE
Q 013873 133 VKLWNVPVATLTDSDDS-------------------------TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
|++|++........... ..........+.....+.+++++|+|.+|++|+ |++
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence 99999976321111000 000011223344556889999999999999998 789
Q ss_pred EEEeCCCCcceeeeecCCCceEEEEEcCC--CCcEEEEEecCCcEEEEEccCCCc-----------ceEE----------
Q 013873 186 DIWNHNRSQPINSFQWGTDTVISVRFNPA--EPNVLATTASDRSITLYDLRMSSP-----------ARKV---------- 242 (434)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~---------- 242 (434)
++|++...+....+..|...|.|+.++.. +..+|++++.|..|++||+...-. +..+
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 99999999999999999999999999753 346899999999999999864311 1111
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeC----cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC--Ccc
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMG----HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--MQR 316 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~ 316 (434)
++....+..+++-..++.........+ ....+++++..|..+++++++.|..|+|||+.+++....|...+ .+.
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 111222222222222211111111111 23468899999999999999999999999999999999885543 466
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
...+...|.|-||++.+.|.++.++|+.+|++++.+.+
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 77899999999999999999999999999999877644
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.8e-26 Score=182.10 Aligned_cols=263 Identities=19% Similarity=0.314 Sum_probs=213.1
Q ss_pred HHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC------C------------------
Q 013873 43 RALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA------N------------------ 98 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~------~------------------ 98 (434)
.+.-...+|.+-++.++.++.||.+.|+|+.|++.+ .++++++.|++-.||... .
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred ccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 334456789999999999999999999999999998 999999999999999621 0
Q ss_pred ----------------CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe
Q 013873 99 ----------------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW 162 (434)
Q Consensus 99 ----------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (434)
..++..+.+|.+.|.+..|...|+.+++++.|.+..+||++++..+... ..+
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L------------tGH 313 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL------------TGH 313 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc------------cCc
Confidence 0245668899999999999999999999999999999999999654443 334
Q ss_pred cCceEEEeeccCCCEEEEeCC--eEEEEeCCCC-cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 163 KNSFWAVDHQWEGDLFATAGA--QVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
....+-++-+|..+++++++. +.++||.+.. ..+..|++|.+.|+++.|.-+. .+++|+.|.+|++||+++....
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCc
Confidence 556667778899999998875 4999998743 5578899999999999999865 5889999999999999876432
Q ss_pred -eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE---eccCCc
Q 013873 240 -RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY---HTKRMQ 315 (434)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~ 315 (434)
.++ -...+++.++.+..+..++.--.+..|++||++..++.... ..+|..
T Consensus 392 lATI--------------------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 392 LATI--------------------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred ceee--------------------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 222 24568899999988889999888889999999876654333 344556
Q ss_pred cEEEEEEcCCCC--EEEEeeCCCcEEEeecCcc
Q 013873 316 RVFCVKFSCDAS--YVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 316 ~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~~~ 346 (434)
-|+|++|..+.. -|++++.|..+.-|++...
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 799999976543 4788999999999998754
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1e-25 Score=192.47 Aligned_cols=221 Identities=17% Similarity=0.260 Sum_probs=166.7
Q ss_pred eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE
Q 013873 101 TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (434)
Q Consensus 101 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
....+++|+..|.++++.|.|..|++|+.|-+|++||+........... .........+.++.+++.|..+++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-------~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR-------QLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh-------ccCcccccccceeeecCCCCeEEE
Confidence 3446788999999999999999999999999999999976543221100 001112346788999999887766
Q ss_pred eCC--eEEEEeCCCCcce------------eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeee
Q 013873 181 AGA--QVDIWNHNRSQPI------------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246 (434)
Q Consensus 181 ~~~--~i~i~d~~~~~~~------------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 246 (434)
..| ..+++|-.....+ ...++|...++|.+|+|.....|++++.||++++||+........++...
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 554 5889986654433 23356778899999999999999999999999999998766444332111
Q ss_pred cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee--EEeccCC--ccEEEEEE
Q 013873 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYHTKRM--QRVFCVKF 322 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~--~~v~~~~~ 322 (434)
. ..+..-+++.++|+|+|++||+|+.||.|.+|+..+..... .+...|. ..|+|+.|
T Consensus 312 ~-------------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 312 P-------------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred c-------------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 1 11345578999999999999999999999999986543322 2233343 48999999
Q ss_pred cCCCCEEEEeeCCCcEEEeecCccc
Q 013873 323 SCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 323 s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
|+||++|++-+.|+.+++||++..+
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ccccchhhhccCCCceeeeeccccc
Confidence 9999999999999999999997653
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=179.00 Aligned_cols=223 Identities=22% Similarity=0.365 Sum_probs=182.5
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCC-CceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc
Q 013873 40 EYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118 (434)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 118 (434)
+.......+.++++.....+..+-.|.+.|+++.|.+.- .+.|++|+.||.|.+|+......+..+++|.+.|+.++.+
T Consensus 57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH 136 (362)
T KOG0294|consen 57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH 136 (362)
T ss_pred eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec
Confidence 334455567788888888889999999999999999874 1389999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCccee
Q 013873 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPIN 197 (434)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~ 197 (434)
|.+++.++.+.|+.+++||+-.++. .........-..+.|+|.|..++... ..|-+|.+..-....
T Consensus 137 PS~KLALsVg~D~~lr~WNLV~Gr~-------------a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 137 PSGKLALSVGGDQVLRTWNLVRGRV-------------AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR 203 (362)
T ss_pred CCCceEEEEcCCceeeeehhhcCcc-------------ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh
Confidence 9999999999999999999987742 22333334444589999999777766 569999998877665
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.+.. ...+.|+.|... ..|++|+.|+.|.+||.....+.. .+.+|...|-++
T Consensus 204 ~i~~-~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~-------------------------~~~AH~~RVK~i 255 (362)
T KOG0294|consen 204 EIEN-PKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLT-------------------------EFLAHENRVKDI 255 (362)
T ss_pred hhhc-cccceeeeecCC--ceEEEecCCceEEEeccCCCccce-------------------------eeecchhheeee
Confidence 5544 355777777753 578899999999999988755544 345899999999
Q ss_pred EE--ccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 278 DY--SPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 278 ~~--sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
.+ .|++.+|++++.||.|++||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 84 567889999999999999999865
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.2e-25 Score=175.87 Aligned_cols=240 Identities=15% Similarity=0.181 Sum_probs=180.3
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
-.|..++.+++|.++ ..+++|+.||.|+.+|+.++.... +..|..+|.||.+++....+++||+|++|++||.+...
T Consensus 51 ~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 51 FKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred eecCCceeeeeccCC--ceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 458999999999986 679999999999999999887654 55699999999999988899999999999999987632
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeec--CCCceEEEEEcCCCCcEEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~ 220 (434)
..........|.++....+..++++.+..+.+||+++......... -.-.+.|+++.|++ .-++
T Consensus 128 -------------~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~ 193 (323)
T KOG1036|consen 128 -------------VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYV 193 (323)
T ss_pred -------------cccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceE
Confidence 2222333446777777766656667778899999998755432222 24568899999966 4577
Q ss_pred EEecCCcEEEEEccCCC--cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 221 TTASDRSITLYDLRMSS--PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
+++-||.|.+=.+.... ..+++.+.+... .. .. ..---+|++|+|+|-...|+||+.||.|.+|
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~--------~~-~~-----~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL--------SE-KD-----TEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeec--------cc-CC-----ceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 89999998876555441 122221111000 00 00 0112379999999998999999999999999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
|+.+.+.+..+.... ..|.+++|+.||..||.++.
T Consensus 260 d~~~rKrl~q~~~~~-~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 260 DLFNRKRLKQLAKYE-TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCcchhhhhhccCCC-CceEEEEeccCCCeEEEEec
Confidence 999988877776553 67999999999999999874
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-24 Score=171.20 Aligned_cols=259 Identities=19% Similarity=0.321 Sum_probs=187.7
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEEEe
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~iw 136 (434)
.+|.+-|.|+.|.+.| ..+|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+|+|+.|+++.||
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 6899999999999999 99999999999999996543 44556789999999999976 68999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCC------cceeeee------
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRS------QPINSFQ------ 200 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~------~~~~~~~------ 200 (434)
.-........ ...-............++.+.|.|. |..+++++ |.++||+.... .....++
T Consensus 89 EE~~~~~~~~---~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 89 EEQEKSEEAH---GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eecccccccc---cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 8532211100 0011223344455678999999884 56677665 77999986542 2222332
Q ss_pred -cCCCceEEEEEcCCC--CcEEEEEecC-----CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc
Q 013873 201 -WGTDTVISVRFNPAE--PNVLATTASD-----RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES 272 (434)
Q Consensus 201 -~~~~~i~~i~~~~~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (434)
.+.....|+.|+|.. +.+|++|+.+ +.+.||......... .....+.+|..
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw---------------------~kva~L~d~~d 224 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW---------------------LKVAELPDHTD 224 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee---------------------eeehhcCCCCC
Confidence 345677899999753 3578887766 467788765443211 11223348999
Q ss_pred CeEEEEEccC-C---CEEEEEeCCCcEEEEeCCCCe-----------------eeeE--EeccCCccEEEEEEcCCCCEE
Q 013873 273 AVMDIDYSPT-G---REFVTGSYDRTIRIFQYNGGR-----------------SREI--YHTKRMQRVFCVKFSCDASYV 329 (434)
Q Consensus 273 ~i~~~~~sp~-~---~~l~~~~~d~~i~iwd~~~~~-----------------~~~~--~~~~~~~~v~~~~~s~~~~~l 329 (434)
+|++++|.|+ | ..||+++.|| |+||.+.... .+.. ....|.+.|..+.|+-.|..|
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 9999999995 2 4699999999 9999987311 0111 134456899999999999999
Q ss_pred EEeeCCCcEEEeecCccc
Q 013873 330 ISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 330 ~s~~~dg~v~vw~~~~~~ 347 (434)
++.|.||.|++|...-..
T Consensus 304 sStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eecCCCceeeehhhhhhh
Confidence 999999999999876443
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=9.8e-24 Score=186.24 Aligned_cols=268 Identities=10% Similarity=0.116 Sum_probs=191.1
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceE-EeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
.+|+..+...+..+.+|.. +.+++|+|++ ..+ ++++.++.|++||..+++.+..+..+.. +..++|+|+++.++++
T Consensus 14 ~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 14 SVIDTATLEVTRTFPVGQR-PRGITLSKDG-KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIA 90 (300)
T ss_pred EEEECCCCceEEEEECCCC-CCceEECCCC-CEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEE
Confidence 3455555566667766544 6789999998 554 6778899999999999888777765443 5678999999877654
Q ss_pred -eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC---eEEEEeCCCCcceeeeecCC
Q 013873 128 -GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 128 -~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~ 203 (434)
+.|+.|++||+.+... ............+.++|++.+++++.. .+.+||..+++....+.. .
T Consensus 91 ~~~~~~l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKV-------------LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred cCCCCeEEEEECCCCeE-------------EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 5689999999976532 222222334567899999999887763 367789988776654433 3
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
....+++|+|++..+++++..++.|.+||+.+......+..... . . .........++|+|++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-----------~------~-~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-----------G------V-HPEAVQPVGIKLTKDG 218 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-----------c------c-ccccCCccceEECCCC
Confidence 34578999999854556666799999999987765443321000 0 0 0011123468899999
Q ss_pred CEEEE-EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe-eCCCcEEEeecCcccccccCC
Q 013873 284 REFVT-GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG-SDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 284 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~~ 353 (434)
+++++ .+.++.|.+||+.+++........ ..+.+++|+|+|.+|+++ +.+|.|.+||+.+++.+..+.
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEEeC--CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 98554 455778999999988776554333 468899999999999876 468999999999998877664
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=190.10 Aligned_cols=274 Identities=18% Similarity=0.307 Sum_probs=208.4
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.+.|+++.--+..-+.++.|+.+|.+.+||+++++.+++++++...|+++.=+|--..++.|..+|+|.++++..+
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---- 234 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---- 234 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC----
Confidence 3448887655555677999999999999999999999999999999999999998889999999999999999877
Q ss_pred CCCCCCCCCCceeEEEec-CceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeee-cCCCceEEEEEcCCCCcEEE
Q 013873 146 SDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~ 220 (434)
+.+..+.+. +.|.+++|..||..+.+.+ |++.+||++..+.+..+. .|.+.+....|.|.. .+++
T Consensus 235 ---------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ 304 (910)
T KOG1539|consen 235 ---------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLV 304 (910)
T ss_pred ---------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEe
Confidence 344555554 8999999999998665544 679999999998887776 677889999999966 6889
Q ss_pred EEecCCcEEEEEccCCCcceE-----------------------EEee--------------------------------
Q 013873 221 TTASDRSITLYDLRMSSPARK-----------------------VIMR-------------------------------- 245 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~-----------------------~~~~-------------------------------- 245 (434)
+++.|..+++|=..++.-..+ +...
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 999999888875542211000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 013873 246 -------------------------------------------------------------------------------- 245 (434)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (434)
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence
Q ss_pred -ecCceeEEEeeCCCCccceee--eeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE-------------
Q 013873 246 -ANEDCNCYSYDSRKLDEAKCV--HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY------------- 309 (434)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------- 309 (434)
+...+.+-.|+....-..... ...|.++|++++...-++.+++++.+|.+.+||.....+...+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence 222222222322221111111 1368889999999888899999999999999998754422111
Q ss_pred ---------------------------eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 310 ---------------------------HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 310 ---------------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
..+|...|++++|||||++|++++.|++|++||+.++.++..+.
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 12355689999999999999999999999999999999987653
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.1e-25 Score=191.05 Aligned_cols=283 Identities=20% Similarity=0.268 Sum_probs=210.3
Q ss_pred ccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC--eEEEeeCCC
Q 013873 54 FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR--ILVSCGTDC 131 (434)
Q Consensus 54 ~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg 131 (434)
++..+-..+.||++.|.|+...|.| .+|++|+.||+|+||.+.++.++.++. ..+.|.|++|+|.+. .||++ .+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~ 464 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGE 464 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecC
Confidence 3444556679999999999999998 999999999999999999999999887 567999999999655 44444 344
Q ss_pred cEEEeeCCCCCCC---------CCC---CCC-------------CCCCCceeEEEecCceEEEeeccCCCEEEEeCC---
Q 013873 132 TVKLWNVPVATLT---------DSD---DST-------------DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--- 183 (434)
Q Consensus 132 ~v~iwd~~~~~~~---------~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (434)
.+.|-+..-+..+ ... ... ...........+...+..+.|+..|.+|++...
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 4666654333111 000 000 000112345567788999999999999998653
Q ss_pred --eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce------------------EEE
Q 013873 184 --QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR------------------KVI 243 (434)
Q Consensus 184 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------~~~ 243 (434)
.|.|+++........|.-..+.+.++.|+|..+.+|+ ++ -..|++||+....... .-+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfV-aT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFV-AT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEE-Ee-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 4999999888777777666788999999998855444 43 4689999986542221 223
Q ss_pred eeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe------CCCCeee---eEEeccC-
Q 013873 244 MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ------YNGGRSR---EIYHTKR- 313 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd------~~~~~~~---~~~~~~~- 313 (434)
+.++.+..+..||......+...+.-|...+++++|++.-.+|++|+.||++.||. +..+.++ ..+.+|.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 44777888888898888888888889999999999999999999999999999984 2222222 2222221
Q ss_pred --CccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 314 --MQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 314 --~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
...|..+.|+|...+|++++.||.|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 2358889999999999999999999998
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-25 Score=200.83 Aligned_cols=230 Identities=15% Similarity=0.248 Sum_probs=188.4
Q ss_pred hHHHHHHHHhhhhcc---ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEE
Q 013873 41 YVRALTAAKLEKIFA---RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 41 ~~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 117 (434)
.....+.+.+|++.. .+++..|..|+..|+++.|++..+++|++|+.||+|++||++..+...++.+....|.++.|
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 344455666787765 67788899999999999999998899999999999999999999888889889999999999
Q ss_pred cC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcce
Q 013873 118 ST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI 196 (434)
Q Consensus 118 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 196 (434)
+| .+.+|+++...|.+++||++.. .++.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp---------------------------------------------------~r~~ 213 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQP---------------------------------------------------DRCE 213 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCc---------------------------------------------------hhHH
Confidence 99 6778999999999999999643 2345
Q ss_pred eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 197 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
..+..|.++|.|+.|+|++ .+||||+.|+.|+|||+.+........+ ....+|.+
T Consensus 214 ~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tI------------------------nTiapv~r 268 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTI------------------------NTIAPVGR 268 (839)
T ss_pred HHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEE------------------------eecceeee
Confidence 6677899999999999976 8999999999999999987654433321 34578999
Q ss_pred EEEccCCCE-EEEEeC--CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcc
Q 013873 277 IDYSPTGRE-FVTGSY--DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 277 ~~~sp~~~~-l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+.|-|...+ |++++. |-.|+|||++...........|...++.++|.. |...+.+++.||.|..-.++++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999997654 777754 778999999987766655556668899999965 5667889999998876665544
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.9e-26 Score=201.47 Aligned_cols=236 Identities=21% Similarity=0.405 Sum_probs=205.8
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
+.+..|...|.|+..-..+ ..+++|+.|..+-+|.+.....+..|.+|..+|.++.|++...+|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 3556799999999985555 889999999999999998888888899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
.... ...+..+...+..+.|+|-+.+++.++ .++.+||.+...+...+.+|...+.++.|+|+| .
T Consensus 101 eAk~------------vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G-r 167 (825)
T KOG0267|consen 101 EAKI------------VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG-R 167 (825)
T ss_pred hhhh------------hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC-c
Confidence 7743 334556677888899999999997665 579999999999999999999999999999998 8
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
+++.|+.|..+++||...++....+ ..|.+.+..+.|+|..-++++|+.|++|++
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef-------------------------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEF-------------------------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred eeeccCCcceeeeeccccccccccc-------------------------ccccccccccccCchhhhhccCCCCceeee
Confidence 9999999999999999877665543 479999999999999999999999999999
Q ss_pred EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC
Q 013873 298 FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 335 (434)
||+++-..+...... ...|.+++|+|++..+++|...
T Consensus 223 ~dletfe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 223 WDLETFEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eccceeEEeeccCCc-cCCceeeeecCCceeeecCchh
Confidence 999987766655444 4789999999999999888765
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=6.3e-24 Score=187.85 Aligned_cols=245 Identities=21% Similarity=0.382 Sum_probs=198.1
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee--EEeeccCCCeeE-EEEcC-CCCeEEEeeCCCc
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQYSGHQGAVRG-LTVST-DGRILVSCGTDCT 132 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-i~~~~-~~~~l~s~~~dg~ 132 (434)
.+.+.+.||...|..+++.+. ..++++|.||++++|+-...+.+ ..+.+|.+-|.+ +++.+ ++-.+++|+.|++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 345688999999999998876 57999999999999997665543 346778888877 88876 4446999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
+.+|..... ........|...+++++...++. +++++ .++++|-. ++....+.+|...|.++.
T Consensus 83 i~v~~~~~~------------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 83 IIVFKLSQA------------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVA 147 (745)
T ss_pred EEEEecCCC------------CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeee
Confidence 999998766 34445567788999999888888 55554 67999965 456667999999999999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
..|.+ .++||+.|.+|++|.-. .....+.+|+..|.++++-|++ .|++|+
T Consensus 148 ~l~e~--~~vTgsaDKtIklWk~~---------------------------~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 148 SLPEN--TYVTGSADKTIKLWKGG---------------------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred ecCCC--cEEeccCcceeeeccCC---------------------------chhhhhccchhheeeeEEecCC-CeEeec
Confidence 99976 78899999999999752 2233456999999999998875 578999
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.||.|++|++ ++..+..+..|. .-|.+++..+++..+++++.|++++||+.. ++.+.+
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred CCceEEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 9999999999 566666665554 789999988888899999999999999987 455444
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.4e-23 Score=185.66 Aligned_cols=308 Identities=18% Similarity=0.233 Sum_probs=217.8
Q ss_pred ccccccCCCCCeEEEEeCCCC--CceEEeeeCCCcEEEEeCCCCc---------------------ee----------EE
Q 013873 58 FIGALDGHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIANRR---------------------TV----------CQ 104 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~---------------------~~----------~~ 104 (434)
.+..+.||.+.|.+++|...+ ..+||++|.|..|+||.+.-+. .. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 466789999999999998765 2578999999999999864221 01 11
Q ss_pred eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--
Q 013873 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (434)
Q Consensus 105 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (434)
+.||.+.|.++.|+|.+..|++++.|.++.+|.-....-+-... ...-........++...|+|+++.+++.+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~-----vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV-----VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE-----EEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 24899999999999999999999999999999876542110000 00000011234688999999999998887
Q ss_pred CeEEEEeCCC---CcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc--------------------c
Q 013873 183 AQVDIWNHNR---SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP--------------------A 239 (434)
Q Consensus 183 ~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------~ 239 (434)
|..++|-... ......+.+|.+.|..++|+|.| .+|++.+.|.+-++|-.-..+. .
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 6799998332 23455677899999999999999 6888999999988875431100 0
Q ss_pred e-EE-Eee------------------------------------------------------------------------
Q 013873 240 R-KV-IMR------------------------------------------------------------------------ 245 (434)
Q Consensus 240 ~-~~-~~~------------------------------------------------------------------------ 245 (434)
. .+ .+.
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 0 00 000
Q ss_pred ---------------------------------------------------ecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 246 ---------------------------------------------------ANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 246 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
......+++|+...-.. ...+.+|.-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLTV 575 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLTV 575 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-hheecccceEE
Confidence 11223344455443332 23567899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeE---EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc--ccc
Q 013873 275 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI---YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS--EQL 349 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~--~~~ 349 (434)
+.++|||||++|++.+.|.++.+|.......... ....|..-|.++.|+|++.+++|++.|..|+||..... +.+
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 9999999999999999999999998754432211 13445567999999999999999999999999999877 333
Q ss_pred ccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCCh
Q 013873 350 GVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPK 387 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 387 (434)
..+ ....+...|+.++++|....
T Consensus 656 ~~~---------------a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 656 SRF---------------ACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred hhh---------------chhccCCceeeEEeeccccc
Confidence 221 22356777888888776543
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.6e-23 Score=181.42 Aligned_cols=262 Identities=19% Similarity=0.310 Sum_probs=185.7
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE--eeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEe
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSGHQGAVRGLTVST-DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iw 136 (434)
.....|.+.|..+.|-| |...|++++.|.++++||+++++.+.. +.+|.+.|.+++|.+ +...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 45678999999999999 558999999999999999999988776 889999999999999 45588999999999999
Q ss_pred eCCCCCCCCC-------CCCCCC---CCCcee-----EEEecCceEE---EeeccCCCEEEEeC---CeEEEEeCCCCcc
Q 013873 137 NVPVATLTDS-------DDSTDN---SSEPLA-----VYVWKNSFWA---VDHQWEGDLFATAG---AQVDIWNHNRSQP 195 (434)
Q Consensus 137 d~~~~~~~~~-------~~~~~~---~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~---~~i~i~d~~~~~~ 195 (434)
|++....... ...... ...+.. .......+.+ +.+..|...|++++ +.|++||+++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9865541100 000000 111111 1111223333 45556777777766 4599999987643
Q ss_pred eee--------eecC---CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccce
Q 013873 196 INS--------FQWG---TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 196 ~~~--------~~~~---~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
... +..+ .-.+.++.....|..++|++ .|+.|++|++.........
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~---------------------- 309 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVA---------------------- 309 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchh----------------------
Confidence 322 2222 23577888888885555555 5999999999865433221
Q ss_pred eeeeCcccC--eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC-CEEEEeeCCCcEEEe
Q 013873 265 CVHMGHESA--VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLW 341 (434)
Q Consensus 265 ~~~~~~~~~--i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw 341 (434)
.+.++... -..-..+|++.+|++|+.|...++|.+.+.........+|...|++++|.|.. .-++++++|..+++|
T Consensus 310 -~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 310 -EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIW 388 (720)
T ss_pred -hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEE
Confidence 11122111 11124689999999999999999999998877767767777899999998732 346777999999999
Q ss_pred ecCcc
Q 013873 342 KAKAS 346 (434)
Q Consensus 342 ~~~~~ 346 (434)
++..+
T Consensus 389 ~l~~~ 393 (720)
T KOG0321|consen 389 RLSNG 393 (720)
T ss_pred eccCc
Confidence 99654
No 128
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=166.82 Aligned_cols=276 Identities=13% Similarity=0.213 Sum_probs=201.2
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc------------eeEEee-ccCCCeeEEEEc-------CCCCeEEEe
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------------TVCQYS-GHQGAVRGLTVS-------TDGRILVSC 127 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------------~~~~~~-~h~~~v~~i~~~-------~~~~~l~s~ 127 (434)
-...+.|+||| .-|++-+.|..+.+|++...- ...++. .....|...+|- |+..++++.
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45568899999 889999999999999975210 011111 134567788885 567799999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEEEeCC-CCcc--eeee----
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHN-RSQP--INSF---- 199 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~-~~~~--~~~~---- 199 (434)
+.+.-|++||.-++++..+......... -....++.|+|||..+.++.. .|++||+. .+.. +...
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de-------~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDE-------YTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHh-------hhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence 9999999999999987555443322211 123468999999999999985 59999994 3322 1111
Q ss_pred -ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 200 -QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 200 -~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
.+..+.|.+++|+|.....++.|+....+-||.-....+.. .+.+|.+.|+.+.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-------------------------llggh~gGvThL~ 257 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-------------------------LLGGHGGGVTHLQ 257 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-------------------------eecccCCCeeeEE
Confidence 12367789999999998899999999888888776665554 3458999999999
Q ss_pred EccCCCEEEEEeC-CCcEEEEeCCCCe-eeeEEeccCCccEEE--EEEcCCCCEEEEeeCCCcEEEeecCc-ccccccCC
Q 013873 279 YSPTGREFVTGSY-DRTIRIFQYNGGR-SREIYHTKRMQRVFC--VKFSCDASYVISGSDDTNLRLWKAKA-SEQLGVLH 353 (434)
Q Consensus 279 ~sp~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~v~~--~~~s~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~ 353 (434)
|.++|+.|++|+. |..|..||++.-. ++..+..+....-.. ....|++++|++|+.||.|++||+.. +..+..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~- 336 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT- 336 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-
Confidence 9999999999985 6789999998643 333333332212223 44578999999999999999999987 5533333
Q ss_pred hhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 354 PREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
..+...++.++.+|..|....+.+
T Consensus 337 ----------------~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 337 ----------------GNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ----------------ccccccccceecCcccceeeeccC
Confidence 256778899999999997665544
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1e-21 Score=167.83 Aligned_cols=263 Identities=20% Similarity=0.290 Sum_probs=191.2
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
.-|.|++|.++| -++||..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.+ .
T Consensus 247 k~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k-~-- 320 (626)
T KOG2106|consen 247 KFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRK-L-- 320 (626)
T ss_pred eEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccc-c--
Confidence 679999999997 389999999999999988888777779999999999999986 5559999999999932222 1
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 226 (434)
..+......+.+..++-...+.++.+..+.|..=.++++- .....+|......++.+|+. .+|++++.|+
T Consensus 321 --------r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~-~q~~T~gqdk 390 (626)
T KOG2106|consen 321 --------RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSK-NQLLTCGQDK 390 (626)
T ss_pred --------ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCCh-hheeeccCcc
Confidence 2222233334444444443332333333444444444443 33445677789999999988 7889999999
Q ss_pred cEEEEEccCCCcceE----------------EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 227 SITLYDLRMSSPARK----------------VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 227 ~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
.+++|+ ..++... ....+...+..++.|..+ ...+..... ..+++++.|+|+|.+||.|+
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEec
Confidence 999999 2222221 233456666667777666 334444444 78999999999999999999
Q ss_pred CCCcEEEEeCCCC-eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 291 YDRTIRIFQYNGG-RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 291 ~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
.|+.|++|-+..+ .........+.++|+.+.||+|+++|.+-+.|-.|..|.....+++
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 9999999998654 4444444455589999999999999999999999999955444443
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.1e-23 Score=195.72 Aligned_cols=216 Identities=21% Similarity=0.362 Sum_probs=179.1
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
.+..|.+|.+.|..++|+|++ .+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-|+||++-+.|++|++|+
T Consensus 121 ~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 121 VVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred EEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 567789999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC------CeEEEEeCCCCcceeeeecCCCceEEEEE
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 211 (434)
+.+-.+..... .+.........+..+.|+|||.++++.. ..+.|.+-.+.+.-..+.+|..++.++.|
T Consensus 200 t~dw~i~k~It------~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 200 TSDWGIEKSIT------KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred cccceeeEeec------cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 76543322221 2222233345677899999999999875 24889888888888899999999999999
Q ss_pred cCC--------C----C----cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 212 NPA--------E----P----NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 212 ~~~--------~----~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
+|. | + .++|+|+.|++|.+|......|.... ..-....|.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi------------------------~~lf~~SI~ 329 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI------------------------HNLFNKSIV 329 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh------------------------hhhhcCcee
Confidence 982 1 1 17899999999999998666554322 112356899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
+++|+|||-.|+.|+.||+|.++.++...
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 99999999999999999999999987644
No 131
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=170.53 Aligned_cols=256 Identities=19% Similarity=0.316 Sum_probs=169.7
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCce
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (434)
..+|++...|+|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++.......+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 5689999999999999999999999999999999999987 4568999999999999999887654332222211
Q ss_pred eEEEecCceEEEeeccCCCEEEEeC------CeEEEEeCCCCcc-eeee-ecCCCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 158 AVYVWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQP-INSF-QWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~-~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
..+..+++....+.+++++. ..+.+||++..+. +..+ ..|.+.|+++.|+|..+++|++|+.||.|.
T Consensus 117 -----~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 117 -----GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred -----CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 24667777777888888875 2399999998766 5444 568999999999999999999999999999
Q ss_pred EEEccCCCcce-------------EE---------EeeecCceeEEEeeCCCCccceeeeeC-----------cccCeEE
Q 013873 230 LYDLRMSSPAR-------------KV---------IMRANEDCNCYSYDSRKLDEAKCVHMG-----------HESAVMD 276 (434)
Q Consensus 230 iwd~~~~~~~~-------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~ 276 (434)
+||+....... .+ +...+......+|+............+ ....+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 99987542111 11 111111222223333332211111000 0001111
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEeCC---C---CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 277 IDYSPTGREFVTGSY-DRTIRIFQYN---G---GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~-d~~i~iwd~~---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.....++.+++.++. -|...++-+. + .+....+..++..-|.++.|...+.++++|+.||.+.+|...
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 111113334444433 3444444332 1 223334455555667888888888999999999999999963
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=183.98 Aligned_cols=247 Identities=20% Similarity=0.329 Sum_probs=200.3
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC---CCCeEEEeeCCCcEEEeeCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST---DGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~~~dg~v~iwd~~~ 140 (434)
+-...+.|++.+|+| .+||+|..-|+++||++.+.+.+..+..|...|.|+.|+. ..++|++++.|..|++||+..
T Consensus 457 d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 345689999999999 9999999999999999999999999999999999999985 346899999999999999865
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC--CEEEEeCC-eEEEEeCCCCc-ceeeee-----cCCCceEEEEE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAGA-QVDIWNHNRSQ-PINSFQ-----WGTDTVISVRF 211 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~i~i~d~~~~~-~~~~~~-----~~~~~i~~i~~ 211 (434)
.-. .......|...|+++.|..+| ...++++. ....|+..... ....+. .....+..++.
T Consensus 536 ny~-----------l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 536 NYD-----------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ccc-----------hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 421 222334457788999888877 45555553 35555544311 111111 12457899999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
.|.. .++++++.|..|+|||+..++....+.. -.+|.+....+...|.|.|+++.+.
T Consensus 605 dp~~-k~v~t~cQDrnirif~i~sgKq~k~FKg----------------------s~~~eG~lIKv~lDPSgiY~atScs 661 (1080)
T KOG1408|consen 605 DPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKG----------------------SRDHEGDLIKVILDPSGIYLATSCS 661 (1080)
T ss_pred CCCc-ceEEEEecccceEEEeccccceeeeecc----------------------cccCCCceEEEEECCCccEEEEeec
Confidence 9987 7999999999999999998887765521 1367788888999999999999999
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
|.++.++|+.++++.....+|. ..|+.+.|.+|-+.|++.+.||.|.||.+...
T Consensus 662 dktl~~~Df~sgEcvA~m~GHs-E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHS-EAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcc-hheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999999999988886654 78999999999999999999999999998763
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.2e-25 Score=194.26 Aligned_cols=230 Identities=20% Similarity=0.399 Sum_probs=197.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
.++..+..+-.+++||.. .+..|...|.++..-..++.+++|+.|..+-+|.+.... ....+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------~i~S~ 66 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------AITSL 66 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------hhhee
Confidence 344555566677888754 345688889898887788899999999999999986552 23345
Q ss_pred EEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC
Q 013873 160 YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 237 (434)
..+..+|.++.++++..+++++. |.|++||+...+.+.++.+|...+.++.|+|-+ .+++.|+.|+.+.+||++...
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccC
Confidence 77888999999999999998886 679999999999999999999999999999998 788999999999999998766
Q ss_pred cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccE
Q 013873 238 PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 317 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 317 (434)
+...+ .+|...+..+.|+|+|++++.|+.|..++|||+..|+....|..+. +.+
T Consensus 146 c~~~~-------------------------~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e-~~v 199 (825)
T KOG0267|consen 146 CSHTY-------------------------KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE-GKV 199 (825)
T ss_pred ceeee-------------------------cCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc-ccc
Confidence 65543 5799999999999999999999999999999999999988886655 789
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 318 FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
..+.|+|..-++++|+.|++|++||+++.+.+....+
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999999999999999999999999998888766543
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-23 Score=179.01 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=210.9
Q ss_pred HHHHhhhhccccccccccCCC--CCeEEEEeCCCCCceEEee--eCCCcEEEEeCCCC--ce--eEEeeccCCCeeEEEE
Q 013873 46 TAAKLEKIFARPFIGALDGHR--DGISCMAKNPNYLKGFFSG--SMDGDIRLWDIANR--RT--VCQYSGHQGAVRGLTV 117 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~~~~~~l~sg--~~dg~i~iwd~~~~--~~--~~~~~~h~~~v~~i~~ 117 (434)
..+++|+...-.....+..|+ ..+..+.|+... .|+++ +.|..+++|.-... +. +....+ ..-.|++.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVAC 87 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccc--eEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhh
Confidence 345666665555544554443 348999998874 34444 45677899974322 11 122222 24455555
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP 195 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~ 195 (434)
.....|+++||..+.|+|||+....+ ......+...|+++.+.....+++++. |+|.|..+.++..
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~------------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLI------------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHH------------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 55568999999999999999984422 222334567888999999999998875 8899999999988
Q ss_pred eeeeecCCC-ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 196 INSFQWGTD-TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 196 ~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
...|....+ .+.-+.++|....+|.+++.+|.|.+||+....+.... ...|..+.
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~------------------------~~~HsAP~ 211 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA------------------------SEAHSAPC 211 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch------------------------hhhccCCc
Confidence 888877644 45589999999889999999999999999887766543 24799999
Q ss_pred EEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc-ccccC
Q 013873 275 MDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE-QLGVL 352 (434)
Q Consensus 275 ~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~ 352 (434)
..++|+| +..+|++.|.|..|.+||..+.+....+... .+.+.++|+++|.+|++|+..|.|..||++..+ ++.++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe
Confidence 9999999 4567899999999999999988776666544 478999999999999999999999999998654 33333
Q ss_pred ChhhhhhhHHHHHHHHhhccchhhhhhhhccCC
Q 013873 353 HPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 385 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 385 (434)
.+|...|.+++|.|..
T Consensus 290 -----------------sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 290 -----------------SAHDASVTRVAFQPSP 305 (673)
T ss_pred -----------------eecccceeEEEeeecc
Confidence 3677778999998774
No 135
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.6e-24 Score=198.63 Aligned_cols=247 Identities=18% Similarity=0.287 Sum_probs=196.2
Q ss_pred CCCeEEEEeCCCCCc---eEEeeeCCCcEEEEeCCCC------ceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEE
Q 013873 66 RDGISCMAKNPNYLK---GFFSGSMDGDIRLWDIANR------RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKL 135 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~---~l~sg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~i 135 (434)
....+.++|.+.|.. +||.|..||.|.+||...- ..+.+...|++.|..+.|++.+. .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457889999998733 4899999999999997652 33556778999999999999554 9999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeecCCC--ceEEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTD--TVISVR 210 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~--~i~~i~ 210 (434)
||+.......... .......|.+++|+..-. +|++++ |.+.|||++..+++..+..+.. .+..++
T Consensus 144 WDlnn~~tP~~~~----------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG----------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred eccCCcCCCCCCC----------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeee
Confidence 9998754322211 122345677888887554 455554 5699999999998888876544 477899
Q ss_pred EcCCCCcEEEEEecCC---cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC-CEE
Q 013873 211 FNPAEPNVLATTASDR---SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REF 286 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l 286 (434)
|+|+....+++++.|. .|.+||+|.... +..++.+|...|.++.|++.+ .+|
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~ass------------------------P~k~~~~H~~GilslsWc~~D~~ll 269 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASS------------------------PLKILEGHQRGILSLSWCPQDPRLL 269 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCC------------------------chhhhcccccceeeeccCCCCchhh
Confidence 9999988888887764 588899875433 333456899999999999955 899
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEeeCCCcEEEeecCccc
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 347 (434)
++++.|+.|.+|+.++++.+..+... ...+..+.|.|... .|++++-||.|.|+.+....
T Consensus 270 lSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 270 LSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999998888664 37899999999554 88889999999999998765
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.1e-23 Score=172.60 Aligned_cols=209 Identities=18% Similarity=0.271 Sum_probs=171.3
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~ 140 (434)
..+|++.|..++|+..-.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 4689999999999998779999999999999999999999999999999999999999 567999999999999999975
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCC-cceeeeecCCCceEEEEEcCCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
. ..........+.+-.++|.+.....+.+ +|.++-+|++.. +++.+++.|.+.|.++++++.-+
T Consensus 319 ~------------~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 319 P------------SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred c------------cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 3 2344455667788888998876544333 388999999876 89999999999999999999999
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEeCCCcE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRTI 295 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i 295 (434)
+++++++.|+.+++|++....+..... ..-.-+...|+++.|+-. +++.||..+.+
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~-----------------------~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSPKSVKE-----------------------HSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred cceeeccccceEEEEeecCCCCccccc-----------------------ccccccceeecccCCCcceEEEecCccceE
Confidence 999999999999999997665432210 000112356777777654 57888888899
Q ss_pred EEEeCCCCee
Q 013873 296 RIFQYNGGRS 305 (434)
Q Consensus 296 ~iwd~~~~~~ 305 (434)
+|||+.+...
T Consensus 444 ~vwd~~~~~~ 453 (463)
T KOG0270|consen 444 RVWDIFTNSP 453 (463)
T ss_pred EEeecccChh
Confidence 9999987654
No 137
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=7.9e-22 Score=164.14 Aligned_cols=282 Identities=16% Similarity=0.260 Sum_probs=209.9
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---------eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
..+|..+.|.+...+.|+||+.|..|++|-++.+. .+..+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999875699999999999999876432 244577899999999999999999999999999999
Q ss_pred eCCCCCCCCCCC-CCCCCC---CceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 137 NVPVATLTDSDD-STDNSS---EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 137 d~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
....-....... ...... .......+...++.++|++++.+++++. ..+++||+..++....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 876422110100 000000 0111223457889999999999999887 4599999999999999999999999999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEE-----------------------------------------e-----
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVI-----------------------------------------M----- 244 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------------------~----- 244 (434)
|.|-+ .++++-+.|...+.+.+.......... +
T Consensus 173 wDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 173 WDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred cchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 99987 788888888766666654332222111 0
Q ss_pred ---eecC-ceeEEEeeCCCCccceeeeeCcccCeEEEEEccC------------------CCEEEEEeCCCcEEEEeCCC
Q 013873 245 ---RANE-DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT------------------GREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 245 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~------------------~~~l~~~~~d~~i~iwd~~~ 302 (434)
.+.. -...|.|+......+...+.....+...+.|+|- +-.+|.++ .+.|+|||.++
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 0111 3455677777666776666666666666666651 22355555 56699999999
Q ss_pred CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 303 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
..++.....-|-..+++++|++||.+|+..+.||...+-.++..++-
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 88888888878899999999999999999999999988888776553
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.2e-23 Score=170.30 Aligned_cols=262 Identities=17% Similarity=0.271 Sum_probs=184.6
Q ss_pred HHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe---eccCCCeeEEEEcCC
Q 013873 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY---SGHQGAVRGLTVSTD 120 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~ 120 (434)
.++-+++.+.....+...+.||...|+.+.|+|+.++++++||.|.+|++||+++..++..+ .+|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 44556777888889999999999999999999998899999999999999999999998876 579999999999999
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ 200 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 200 (434)
|.+|++||.|.++++|++...++....... ..+++++...-.-.-...+.+. .+-.
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------------------~~~~~~~t~~pfpt~~~~fp~f------st~d 248 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELS------------------ITYSPNKTTRPFPTPKTHFPDF------STTD 248 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhh------------------cccCCCCccCcCCccccccccc------cccc
Confidence 999999999999999999866543322211 1222222110000000111111 1234
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc-CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE--
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLR-MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI-- 277 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 277 (434)
.|...|-|+.|.- +++++-+-++.|..|... ..+....+....+.. .....+.-....|+.+
T Consensus 249 iHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~------------Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 249 IHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESAT------------TILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccce------------eeeeEeccCccceEEEEE
Confidence 5788899999983 678898889999999872 222211110000000 0001111223344444
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeee---EEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSRE---IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+|.|-++.||.|...|.|.+||++...+.. .........|...+|+.||.+|+..++||.|.-||..
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 566778999999999999999998776531 2223334679999999999999999999999999864
No 139
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-22 Score=157.21 Aligned_cols=229 Identities=16% Similarity=0.242 Sum_probs=172.4
Q ss_pred HHHHHHHHhhhhcc---ccccccccCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCCCce--eEEeeccCCCeeEE
Q 013873 42 VRALTAAKLEKIFA---RPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGL 115 (434)
Q Consensus 42 ~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~i 115 (434)
..+...+++..+-. ..++.+|.||+++|..++|.. ..+.+||+++.||.|.||.-++++- ......|...|+++
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 33344444444422 257889999999999999954 4349999999999999999887743 44567899999999
Q ss_pred EEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC---C-----------CEEE
Q 013873 116 TVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE---G-----------DLFA 179 (434)
Q Consensus 116 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~ 179 (434)
+|.|. |-.|++++.||.|.|.+.+....- ........|.-.+.+++|.|. | ..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w---------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCc---------cchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 99984 568999999999999998765211 233334456677888888875 3 3477
Q ss_pred EeC--CeEEEEeCCCCc--ceeeeecCCCceEEEEEcCCC---CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 180 TAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAE---PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 180 ~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
+++ ..|.||+...+. .-..+..|.+.|..++|.|.- ...+++++.||++.||-.+......+.
T Consensus 180 SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~---------- 249 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK---------- 249 (299)
T ss_pred ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc----------
Confidence 776 459999988763 335588999999999999964 357999999999999987633222111
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
..+......+..+.||+.|+.|+.++.|+.|.+|.-+
T Consensus 250 ------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 250 ------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1222356789999999999999999999999999654
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=165.77 Aligned_cols=226 Identities=19% Similarity=0.380 Sum_probs=171.0
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee---EEeeccCCCeeEEEEcCC-CCeEEEeeCC
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV---CQYSGHQGAVRGLTVSTD-GRILVSCGTD 130 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~-~~~l~s~~~d 130 (434)
....+.++.+|...=+.++|||-....|++|..-+.|++|...++.-. ..|.+|+..|-.++|+|. ...|++|+-|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 345678899999999999999964456899988899999998886532 246789999999999994 4589999999
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCC---CcceeeeecCCCc
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR---SQPINSFQWGTDT 205 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~---~~~~~~~~~~~~~ 205 (434)
|+|+|||++.+.. ..++....+.+.|+.++|+....+|++|+ |.+.|||++. ++++..|..|..+
T Consensus 280 gsIrIWDiRs~~~----------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 280 GSIRIWDIRSGPK----------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ceEEEEEecCCCc----------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 9999999987743 34555667788999999999999888887 6799999876 5788999999999
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CC
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GR 284 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~ 284 (434)
|+++.|+|.....|++++.|..|.+||+................ .......+.........+..+.|++. ..
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-------L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG-------LQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc-------hhcCCceeEEEecchhHhhhheeccCCCC
Confidence 99999999998999999999999999997543321110000000 00111111111112446888999995 45
Q ss_pred EEEEEeCCCcEEEE
Q 013873 285 EFVTGSYDRTIRIF 298 (434)
Q Consensus 285 ~l~~~~~d~~i~iw 298 (434)
++++.+.|| +.||
T Consensus 423 ~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 423 LLVSTAIDG-FNVF 435 (440)
T ss_pred eEEEecccc-eeEE
Confidence 788888888 4454
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=168.96 Aligned_cols=243 Identities=18% Similarity=0.309 Sum_probs=179.8
Q ss_pred EEEEeCCC------CCceEEeeeCCCcEEEEeCCCCc---ee------------------EEeeccCCCeeEEEEcCC-C
Q 013873 70 SCMAKNPN------YLKGFFSGSMDGDIRLWDIANRR---TV------------------CQYSGHQGAVRGLTVSTD-G 121 (434)
Q Consensus 70 ~~~~~~~~------~~~~l~sg~~dg~i~iwd~~~~~---~~------------------~~~~~h~~~v~~i~~~~~-~ 121 (434)
.|++|... -++++|.|+.|..|.|||+.-.. +. ..-.+|+..|.+++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666432 13899999999999999986211 00 112369999999999874 4
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceee
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINS 198 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~ 198 (434)
..||+||.|.+|++||+.+++. ......+...|.++.|+|... ++++|+ +++.+.|.+.......
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKP------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCc------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 5899999999999999998843 222234677899999999654 555555 6799999985333222
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC-CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.-...+.|..++|.|..++.|+++..||+++-+|+|.. ++.. ....|.++|.++
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw-------------------------t~~AHd~~ISgl 379 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW-------------------------TLKAHDDEISGL 379 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee-------------------------EEEeccCCcceE
Confidence 22236779999999999999999999999999999876 3333 345899999999
Q ss_pred EEccC-CCEEEEEeCCCcEEEEeCCCCeeeeEE-eccCCccEEEEEEcCCCC-EEEEeeCCCcEEEeecCccccc
Q 013873 278 DYSPT-GREFVTGSYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 278 ~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
++++. ..++++++.|+.|++|++......... +....+...|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99984 457999999999999998765543322 111124567788888654 5677888889999999877554
No 142
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.7e-23 Score=169.52 Aligned_cols=228 Identities=18% Similarity=0.294 Sum_probs=177.1
Q ss_pred hhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-------------------
Q 013873 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------------------- 98 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~------------------- 98 (434)
..+.....+.+++|++....++.+|..|.+.|..+++.. ..+++++.|.+|+.|.++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 334455567889999999999999999999999999987 3478888899888887431
Q ss_pred -------------------CceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 99 -------------------RRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 99 -------------------~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
..++..+.--...|.++.|+|.. ..|++|+.|+.|.+||++.+ .++.
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-------------~Pl~ 224 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-------------SPLK 224 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC-------------Cccc
Confidence 11222233334567888888844 47778889999999999887 4445
Q ss_pred EEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCC-cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 235 (434)
.......-..++|+|.+..|++++.+ ++.||++.. .++....+|.+.|.+++|+|.| .-|++|+.|.+|+||..+.
T Consensus 225 KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 225 KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred eeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCC
Confidence 55555666789999988888888754 888888764 6788889999999999999999 7899999999999999886
Q ss_pred CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee
Q 013873 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
+..-..+ ....-..|.|+.||-|.+++++||.|+.|++|.....+.+
T Consensus 304 ~~SRdiY------------------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 304 GHSRDIY------------------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred Ccchhhh------------------------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 6432211 0112356899999999999999999999999987654433
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=175.24 Aligned_cols=259 Identities=14% Similarity=0.235 Sum_probs=191.9
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
.|..++|-|||..+++++ +..+.+||.+.|..+.++++|.+.|.|++|+.||+.+++|+.|..|.+|+-.
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-------- 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-------- 83 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc--------
Confidence 899999999994444444 3479999999999999999999999999999999999999999999999854
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 226 (434)
......+.|...|.|+.|+|-...+++++ ++.-+|......... .+ ....+.+++|..+| .+|+.|..+|
T Consensus 84 ------lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDG-qylalG~~nG 154 (1081)
T KOG1538|consen 84 ------LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDG-QYLALGMFNG 154 (1081)
T ss_pred ------ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hh-hheeEEEeeecCCC-cEEEEeccCc
Confidence 24456678889999999999999999988 778899876543322 22 14678999999998 8999999999
Q ss_pred cEEEEEccCCCcceEEEeeecCceeEEEe-----------------eCCCC-------ccceeeeeCcccCeEEEEEccC
Q 013873 227 SITLYDLRMSSPARKVIMRANEDCNCYSY-----------------DSRKL-------DEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 227 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
+|.+-+-. +++...+.-.+..+..++.. |.... +........-.-...|+.+.|+
T Consensus 155 TIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 155 TISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred eEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccC
Confidence 99987543 22222222222222222211 11100 0000000112234567889999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
|.++..||.|+.+.+|-- .|-.+.+... ....|+.++..|++++++.|+.||+|..|++.....
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHh
Confidence 999999999999999954 4555555433 347899999999999999999999999999876543
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=6.5e-21 Score=168.22 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=176.5
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
.++++++.||.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||..+++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------ 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------------ 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe------------
Confidence 678999999999999999999888887654 46789999999876 5667889999999987643221
Q ss_pred EEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC-cEEEEEcc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLR 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~iwd~~ 234 (434)
.........+.++|++..+++. ++.+.+||+.+.+.+..+..+ ..+.+++|+|++ .++++++.++ .+.+||..
T Consensus 69 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 69 -LPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDG-KIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred -ccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCC-CEEEEEecCCCeEEEEeCC
Confidence 1112234567889999866544 256999999988777766542 346889999988 6777777665 46677876
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeeeEEeccC
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYHTKR 313 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~ 313 (434)
+....... .....+.+++|+|+|++|+++ ..++.|.+||+.+++....+....
T Consensus 146 ~~~~~~~~--------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 146 TYEIVDNV--------------------------LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred CCeEEEEE--------------------------EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 55432221 112235678999999988554 469999999999987665543211
Q ss_pred ------CccEEEEEEcCCCCEEEE-eeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 314 ------MQRVFCVKFSCDASYVIS-GSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 314 ------~~~v~~~~~s~~~~~l~s-~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
......++|+|+++++++ .+.++.+.+||..+++.+..+. +...+..++|+|...
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~------------------~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL------------------VGQRVWQLAFTPDEK 261 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE------------------eCCCcceEEECCCCC
Confidence 112356889999998654 3456789999998877654331 122456778887776
Q ss_pred hHH
Q 013873 387 KPI 389 (434)
Q Consensus 387 ~~~ 389 (434)
.++
T Consensus 262 ~l~ 264 (300)
T TIGR03866 262 YLL 264 (300)
T ss_pred EEE
Confidence 554
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-21 Score=169.04 Aligned_cols=251 Identities=14% Similarity=0.223 Sum_probs=193.5
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce-eEEeecc-CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-VCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
--...|.|+||+.+. +.||.+-.||.|.||++..+=. ...+.++ ...|.+++|++. ..|++.+.+|.|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccC
Confidence 346789999999998 8899999999999999987633 3334443 468999999954 57888999999999999877
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCccee--eeecCCCceEEEEEcCCCCc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~ 217 (434)
+ .........+.+++++.+|.+..++.+. |.+..++...++... .+.-..+.+.+++|+|++ .
T Consensus 101 k------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~ 167 (691)
T KOG2048|consen 101 K------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-T 167 (691)
T ss_pred c------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-c
Confidence 3 3334444567899999999999888874 546666666555432 233346899999999998 7
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
.+++|+.||.|++||...+........... ..-.....-|+++.|-.+ ..|++|...|+|.+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d-----------------~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLD-----------------RLSKREPTIVWSVLFLRD-STIASGDSAGTVTF 229 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeeccc-----------------ccccCCceEEEEEEEeec-CcEEEecCCceEEE
Confidence 789999999999999988776552211000 001123445788888755 47999999999999
Q ss_pred EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 298 FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
||...+.+...+..+. ..|.+++..+++.++++++.|+.|.-|...++..
T Consensus 230 Wd~~~gTLiqS~~~h~-adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHD-ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EcccCcchhhhhhhhh-cceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999887776554 8899999999999999999999999998876644
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.2e-20 Score=161.46 Aligned_cols=288 Identities=15% Similarity=0.212 Sum_probs=202.0
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCC-CceEEee--eCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNY-LKGFFSG--SMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
+++|+..+-.-++.+......|+|++|++.. +.+|+.- +.+..+.+||...+......+..+..|....|+|.+..|
T Consensus 136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nl 215 (626)
T KOG2106|consen 136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNL 215 (626)
T ss_pred eeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcE
Confidence 4566665656666677788999999999863 3555543 344568999999888887788788899999999966655
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+.....|.+.+|+.+.+.+........ ...+..+.++.|.++|..+...+ |.|.||+..+.+.......|.
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~~fe--------k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQGIFE--------KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEeeccc--------cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC
Confidence 555556899999998886643322111 11235688999999999876654 679999998888877777999
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE---------EeeecCceeEEEeeCCCC-------ccceeee
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV---------IMRANEDCNCYSYDSRKL-------DEAKCVH 267 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~~~~~ 267 (434)
+.|.+++...+| . |++|+.|..|..||-. -...+.. .......+.+++-..++. .......
T Consensus 288 ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 288 GGVFSLCMLRDG-T-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred CceEEEEEecCc-c-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 999999999887 3 5679999999999932 1111111 111111111333332221 1223344
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC--------------------------------------CCeeeeEE
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN--------------------------------------GGRSREIY 309 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~--------------------------------------~~~~~~~~ 309 (434)
.+|......++.+|+.+.+++++.|+.+++|+-. +.. +...
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-lv~~ 443 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-LVTI 443 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-eEEE
Confidence 5777788888888888888888888888888721 111 1112
Q ss_pred eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 310 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+.. ..+++++.|+|+|.+||.|+.|+.|+||.+..+..
T Consensus 444 ~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 444 HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 222 46899999999999999999999999999976544
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.7e-22 Score=177.63 Aligned_cols=299 Identities=18% Similarity=0.254 Sum_probs=216.4
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc----eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
....||.+.|..++|+|.| .+|++.+.|.+-+++-.-..+ .+..-+-|...++|++|-+....+++|.....+|+
T Consensus 355 ~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred cccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 3568999999999999999 899999999999998654221 22233568888999999986678999999999999
Q ss_pred eeCCCC-----------CC-----------CCCCC------C---CC---------------------------------
Q 013873 136 WNVPVA-----------TL-----------TDSDD------S---TD--------------------------------- 151 (434)
Q Consensus 136 wd~~~~-----------~~-----------~~~~~------~---~~--------------------------------- 151 (434)
|+.... .. +.... . ..
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 985210 00 00000 0 00
Q ss_pred CCCCceeEEEecCceEEEeeccCCCEEEEeCC-------eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec
Q 013873 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-------QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 224 (434)
.-......+.|...+++++.+|++++++++.. .|.+|+..+...+..+.+|.-.|+.++|+|++ .+|++.+.
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsR 592 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG-RYLLSVSR 592 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC-cEEEEeec
Confidence 00111223456667899999999999999873 39999999999999999999999999999999 89999999
Q ss_pred CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 013873 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG- 303 (434)
Q Consensus 225 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~- 303 (434)
|.++.+|..........- ......|..-|.++.|+|++.+|+|+|.|.+|+||.....
T Consensus 593 DRt~sl~~~~~~~~~e~~---------------------fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFR---------------------FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred CceEEeeeeecccchhhh---------------------hccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999997543222110 0113579999999999999999999999999999998877
Q ss_pred -eeeeE-EeccCCccEEEEEEcC-C----CCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhh
Q 013873 304 -RSREI-YHTKRMQRVFCVKFSC-D----ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEI 376 (434)
Q Consensus 304 -~~~~~-~~~~~~~~v~~~~~s~-~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 376 (434)
+.+.. -.......|+.++|.| + +..+++|-..|.|.+|....-....+. ....+...+.....+...|
T Consensus 652 d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~aV 726 (764)
T KOG1063|consen 652 DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV-----GTFNLDTRLCATIGPDSAV 726 (764)
T ss_pred hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccc-----eeeeeccccccccChHHhh
Confidence 33333 2223447899999977 2 337788999999999996532221111 1111111233445778889
Q ss_pred hhhhhccCCC
Q 013873 377 KRIVRHRHLP 386 (434)
Q Consensus 377 ~~~~~~~~~~ 386 (434)
+.+.|.|...
T Consensus 727 ~rl~w~p~~~ 736 (764)
T KOG1063|consen 727 NRLLWRPTCS 736 (764)
T ss_pred heeEeccccc
Confidence 9999988753
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.6e-21 Score=155.28 Aligned_cols=253 Identities=18% Similarity=0.250 Sum_probs=186.8
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCC-------CcEEEEeCCCC---------ceeEEee-ccCCCeeEEEEcCCC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMD-------GDIRLWDIANR---------RTVCQYS-GHQGAVRGLTVSTDG 121 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~d-------g~i~iwd~~~~---------~~~~~~~-~h~~~v~~i~~~~~~ 121 (434)
-..|..|.+.|..++-+|..+.+|+|+..+ -.+.||.+... +++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345677899999999999887788877553 23789987643 2233343 455689999999999
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCC-CCCCCCCCCCCceeEEEecCceEEEeecc--CCCEEEEeC-CeEEEEeCCCCccee
Q 013873 122 RILVSCGTDCTVKLWNVPVATLT-DSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFATAG-AQVDIWNHNRSQPIN 197 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~i~i~d~~~~~~~~ 197 (434)
..+++-. |..|.+|++...... ........ ..+...+.+-+|+| ++..+++.+ +++..||+++.+...
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhc
Confidence 9998866 789999999876542 11111110 11344566777887 677777655 679999999988877
Q ss_pred eee-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 198 SFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 198 ~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
.+. .|...+..+.|+|+...+|++|+.||.|++||.|..+ .++..+.+|...|++
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk------------------------~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK------------------------FPVQELPGHSHWVWA 263 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC------------------------ccccccCCCceEEEE
Confidence 765 4667899999999998999999999999999998654 333455689999999
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEeCCCCe-----------------------------eeeEEeccCCccEEEEEEcC-C
Q 013873 277 IDYSPT-GREFVTGSYDRTIRIFQYNGGR-----------------------------SREIYHTKRMQRVFCVKFSC-D 325 (434)
Q Consensus 277 ~~~sp~-~~~l~~~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~-~ 325 (434)
+.|+|. .+++++||.|..|.+|...+-. .+..+ ..|...|.+++||. |
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCC
Confidence 999994 5688999999999999653210 11122 23447899999987 5
Q ss_pred CCEEEEeeCCCcEEEeecC
Q 013873 326 ASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 326 ~~~l~s~~~dg~v~vw~~~ 344 (434)
.=.+|+-+.||.+.|=++.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 5567788999999886654
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-22 Score=174.10 Aligned_cols=270 Identities=22% Similarity=0.342 Sum_probs=198.7
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC--------CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
.++..|.+.|++++|+|.. ..|++++.||++.+|+++. -+++.+|.+|.++|.|+++.+++..+++||.||
T Consensus 288 ~tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3788999999999999997 8999999999999999932 256888999999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeec--CCCceE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQW--GTDTVI 207 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~--~~~~i~ 207 (434)
+|+.|++... ...........-......+...++.+++++....++++ +|+++.|+.....+ ..+.. ..+..+
T Consensus 367 ~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCC--CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999998722 22333333333444566778899999999988777777 58899999877766 22322 234456
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
++.+-.......++...-+.-.++++........+ .+. ... .......++.+.++|.+.+.+
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~---~s~----------~~~-----~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIF---ESS----------ASP-----GPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeec---ccc----------CCC-----cccccCccceEEecCCCCeeE
Confidence 66666544333333333333333443333222211 110 000 001224577889999999999
Q ss_pred EEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 288 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
++..|+.|+++|..++..+.....+. ..++++++.|+|.+|++|+.||.+++|++....++...
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~-~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHK-DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ecccCCceecccccccccchheeecc-ceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 99999999999999999887776554 78999999999999999999999999999876665443
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=158.18 Aligned_cols=261 Identities=18% Similarity=0.277 Sum_probs=187.6
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
.....|++|.+.|+++.|..++ +|.+|..-|.|.+|++.+......+. .|...|+.+.-.|+ ..+.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 4456788999999999999884 59999999999999999998888887 67789999999887 46888899999999
Q ss_pred eeCCCCCCCCCC--------------CCCCCC--------------------CCceeEE-------EecCceEEEeecc-
Q 013873 136 WNVPVATLTDSD--------------DSTDNS--------------------SEPLAVY-------VWKNSFWAVDHQW- 173 (434)
Q Consensus 136 wd~~~~~~~~~~--------------~~~~~~--------------------~~~~~~~-------~~~~~~~~~~~~~- 173 (434)
|++.-...+... ...... ....... ...+.+.+..+..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 998653222110 000000 0000000 0112334444222
Q ss_pred CC-CEEEEeC---CeEEEEeCCCC----------cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 174 EG-DLFATAG---AQVDIWNHNRS----------QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 174 ~~-~~~~~~~---~~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
.+ ..++.++ |.+.+||+.++ +.......|..++.++.+.+.- ..=++|+.+..+..|.+......
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCc
Confidence 22 2333333 67999999987 3334445688899999998754 33456777788889988754222
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
..+. . ...-....|..+.+-||++.+|++|.|+.|+||+.++..++..+..|. ..|++
T Consensus 241 lq~~--------------------~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~ 298 (323)
T KOG0322|consen 241 LQIR--------------------K-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNA 298 (323)
T ss_pred cccc--------------------c-eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeE
Confidence 1110 0 111223468889999999999999999999999999999998886665 88999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeec
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
++|+|+..++|+++.|+.|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-21 Score=176.84 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=189.4
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
+.-|...|.+++... ++|++|+.+++|.+|.+.+++.-..+...+-++.+++|+.+|++++.|+.|-.|++-++.+.
T Consensus 52 i~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 52 IDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred hhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence 333778888888754 57999999999999999998876666667789999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC--------CCceEEEEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--------TDTVISVRF 211 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--------~~~i~~i~~ 211 (434)
........+..++.++.++|++.++++.. |.|++||+.++.....+.+- ...+..++|
T Consensus 129 ------------s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 129 ------------SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred ------------chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee
Confidence 45666777889999999999999998765 78999999998776555431 345678999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
+|+++ .|+..+.|+.|++|+.........+. ...+...+.+++|+|+|+|||+++.
T Consensus 197 ~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr-----------------------~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 197 HPKGG-TLAVPPVDNTVKVYSRKGWELQFKLR-----------------------DKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cCCCC-eEEeeccCCeEEEEccCCceeheeec-----------------------ccccccceEEEEEcCCCcEEeeecc
Confidence 99984 56677789999999998887665542 1234455999999999999999999
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
||.|.|||.++-.. ......|++++|.|+...+-.-...|...+|
T Consensus 253 ~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 DGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999987221 1123679999999998876655555555555
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=5.7e-22 Score=158.32 Aligned_cols=217 Identities=21% Similarity=0.373 Sum_probs=164.1
Q ss_pred eccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC---CCceeEEEecCceEEEeecc-CCCEEEE
Q 013873 106 SGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS---SEPLAVYVWKNSFWAVDHQW-EGDLFAT 180 (434)
Q Consensus 106 ~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 180 (434)
..|.+.|+++...+ .|+++++|+.||.|.+||++...-.......... ........|+-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999988 7899999999999999999765421111000000 01111123445677778877 4455655
Q ss_pred eC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCC--cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
++ ..+++||.++.+....|.- .+.|.+-+++|-.. .++++|..|-.|++-|+..+.....+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-------------- 184 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-------------- 184 (397)
T ss_pred ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee--------------
Confidence 55 4699999999998888875 67788888888542 47788888889999999988776654
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCC-eeeeEE-------------eccCCccEEEEE
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGRE-FVTGSYDRTIRIFQYNGG-RSREIY-------------HTKRMQRVFCVK 321 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~-------------~~~~~~~v~~~~ 321 (434)
.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+ ...|.+.|.+++
T Consensus 185 -----------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 185 -----------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred -----------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 599999999999998776 889999999999999753 122221 234557899999
Q ss_pred EcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 322 FSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 322 ~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
|+.++.++++.+.|..+++|+..+|+.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcc
Confidence 999999999999999999999998865
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.9e-22 Score=170.05 Aligned_cols=231 Identities=15% Similarity=0.246 Sum_probs=182.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
.|.++.+.|. .-.|++..... .++++|+..|.|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|
T Consensus 71 Vp~~~k~~gd--~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 71 VPRVRKLTGD--NAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred cceeeccccc--hHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence 3455555554 44455555554 88999999999999999977777889999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE-e--CCeEEEEeCCCCcceeee-ecCCCceEEEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT-A--GAQVDIWNHNRSQPINSF-QWGTDTVISVRF 211 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~ 211 (434)
..+.++.....+... ....+.-+.+++..+.++. + .|.|.+||+....++..+ ..|..+...|+|
T Consensus 148 h~~~t~~~tt~f~~~-----------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTID-----------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EecccCccccceecC-----------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence 999877432222111 1234457788887765543 3 267999999988887665 458889999999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
+|..+.+|++.+.|..|.+||++.......+ ....+...++|+++|.+|+.|+.
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------------------~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------------------TYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCCccceEEEecccceEEEeeccccccccee--------------------------eecCCcceeeecCCceEEEeecC
Confidence 9999999999999999999999976655554 23557889999999999999999
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
.|.|..||++..+........|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999998765555545555779999997765
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.7e-21 Score=171.14 Aligned_cols=195 Identities=15% Similarity=0.270 Sum_probs=135.5
Q ss_pred CCCCCCChhhh-hhhHHHHHHHHhhhhcccccccc-------ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC
Q 013873 28 YDPNLRPQEKA-VEYVRALTAAKLEKIFARPFIGA-------LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR 99 (434)
Q Consensus 28 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 99 (434)
.|..+.|+.+. ++..+....+++|.+..+. -.. +.+..-.|-|+.|+|....+|+++. .|+++|||+.++
T Consensus 83 tDl~FspF~D~LLAT~S~D~~VKiW~lp~g~-~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g~v~i~D~stq 160 (1012)
T KOG1445|consen 83 TDLGFSPFADELLATCSRDEPVKIWKLPRGH-SQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-HGSVYITDISTQ 160 (1012)
T ss_pred eccCccccchhhhhcccCCCeeEEEecCCCc-ccccCCcceeecCCceEEEEeecccCcCceEEecc-CceEEEEEcccC
Confidence 36667777664 3555666678899886222 122 2344557899999998756666655 689999999999
Q ss_pred ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceE--EEeeccCCCE
Q 013873 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW--AVDHQWEGDL 177 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 177 (434)
+.+..+.+|...|.+..|+.||..|++++.|..|+|||-+.. ..++.....+..+. .+.|..+-..
T Consensus 161 k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~------------~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 161 KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS------------MEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC------------CCccccccccccchhheeeeccchhh
Confidence 999999999999999999999999999999999999998765 23333333333332 2334433334
Q ss_pred EEEeC------CeEEEEeCCCC-cceeeeecC-CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 178 FATAG------AQVDIWNHNRS-QPINSFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 178 ~~~~~------~~i~i~d~~~~-~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
+++.+ ..+++||.+.. .++.++... ...|.--.+.|+..-+|++|-.+..+.++.+...
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 55444 24999998764 344444332 2335555678888677777877888888887544
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.6e-21 Score=168.56 Aligned_cols=270 Identities=16% Similarity=0.239 Sum_probs=215.0
Q ss_pred hhhhhhhHHHHHHHHhhhhcccccc-ccccCCC-CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCe
Q 013873 35 QEKAVEYVRALTAAKLEKIFARPFI-GALDGHR-DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV 112 (434)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~h~-~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 112 (434)
....++..++.+.+.+|++....+. ..+.|+. ..|.+++|++. ..|++.+.+|.|.-||+.+++....+....++|
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAI 113 (691)
T ss_pred cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCceeEEecCCCcce
Confidence 3345677888888899999877664 4456664 58999999965 568899999999999999999999999999999
Q ss_pred eEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeC
Q 013873 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (434)
Q Consensus 113 ~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (434)
++++.+|.+..++.|+.||.+..++...+... ....+....+.+.+++|++++..+++|+ |-|++||.
T Consensus 114 Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~----------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 114 WSIAINPENTILAIGCDDGVLYDFSIGPDKIT----------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred eEEEeCCccceEEeecCCceEEEEecCCceEE----------EEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 99999999999999999998888887666442 2223334468899999999999887776 55999999
Q ss_pred CCCcceeeee-------c-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 191 NRSQPINSFQ-------W-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 191 ~~~~~~~~~~-------~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
..+..+.... . ...-|.++.|..+ ..+++|.+.|+|.+||...+......
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~-------------------- 241 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH-------------------- 241 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh--------------------
Confidence 9988766221 1 2335778888755 47999999999999999887666543
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee---eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEE
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS---REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLR 339 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 339 (434)
..|.+.|.+++..+++++++++|.|+.|.-|...++.. .......|...|.+++..++ .+++|+.|+.+.
T Consensus 242 -----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 242 -----SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred -----hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 46899999999999999999999999999998877654 22234556678999999877 899999999988
Q ss_pred EeecCc
Q 013873 340 LWKAKA 345 (434)
Q Consensus 340 vw~~~~ 345 (434)
+-....
T Consensus 315 i~~s~~ 320 (691)
T KOG2048|consen 315 ICSSRE 320 (691)
T ss_pred Eccccc
Confidence 865543
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-22 Score=187.59 Aligned_cols=277 Identities=13% Similarity=0.179 Sum_probs=199.3
Q ss_pred EEEEeCCCCCceEEeee----------CCCcEEEEeCCC--Cc----eeEEeeccCCCeeEEEEcCCCCe----EEEeeC
Q 013873 70 SCMAKNPNYLKGFFSGS----------MDGDIRLWDIAN--RR----TVCQYSGHQGAVRGLTVSTDGRI----LVSCGT 129 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~--~~----~~~~~~~h~~~v~~i~~~~~~~~----l~s~~~ 129 (434)
..++|+|.+..++++|. .+.++-||.+.- .. ....+. .....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 35789999855777663 345566665542 22 233333 3457889999987765 888999
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeee--cCCC
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQ--WGTD 204 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~--~~~~ 204 (434)
||.|-+||...... ............|.+.|..++|++.+. ++++|+ |+|.|||++..+.-.... ...+
T Consensus 89 dG~I~ly~p~~~~~------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIA------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPS 162 (1049)
T ss_pred CCceEEecchhhcc------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence 99999999865310 001122334456788999999999776 788776 569999998865444332 2357
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.|.+++|+..-.++|++++.+|.+.|||++..+++..+.. .+....+..++|+|++.
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-----------------------~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-----------------------TPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-----------------------CCCccceeeeeeCCCCc
Confidence 8999999998889999999999999999998877655421 11223477899999764
Q ss_pred -EEEEEeCCC---cEEEEeCCCCeeeeEEeccCCccEEEEEEcCC-CCEEEEeeCCCcEEEeecCcccccccCChhhhhh
Q 013873 285 -EFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 359 (434)
Q Consensus 285 -~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 359 (434)
.|++++.|. .|.+||++..........+|...|.++.|++. ..+|++++.|+.|.+|+.++++.+..+..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~----- 294 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA----- 294 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----
Confidence 466666554 59999998655433333566688999999994 48999999999999999999999987753
Q ss_pred hHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 360 HAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
...-+..+.|+|..|..+..+.
T Consensus 295 ------------~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 295 ------------QGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ------------CCcceeeeeecCCCcchhhhhe
Confidence 2334567889999997665544
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.9e-21 Score=161.74 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=180.7
Q ss_pred eeeCC-CcEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEE
Q 013873 84 SGSMD-GDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVY 160 (434)
Q Consensus 84 sg~~d-g~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (434)
+++.| .++.+||+.+|....++++.. ..-.++... ++.+++++.. -..|.+|.+.... ......
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~------------~~~q~~ 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKD------------QVVQYI 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchh------------hhhhhc
Confidence 33444 459999999999888887642 221222221 3356666543 4578899986542 222344
Q ss_pred EecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 161 VWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
...+.+.++..+|+|.+++.++ +++++|.+.+|..+..+..|-..|+|+.|+.+| .+|++|+.||.|.+|++-..-.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc
Confidence 5567899999999999999985 789999999999999999999999999999988 7999999999999999743211
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCcc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
. +.+....+.+.+..|.-+|+++...+. ..+|+|+|.|.++++||+..+.++..+... ..
T Consensus 158 a----------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~s 219 (476)
T KOG0646|consen 158 A----------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SS 219 (476)
T ss_pred c----------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--Cc
Confidence 0 111134566777899999999988775 357999999999999999999988877665 68
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+.+++.+|-++.++.|+.+|.|.+.++....
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 9999999999999999999999998876543
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.3e-21 Score=153.06 Aligned_cols=219 Identities=16% Similarity=0.255 Sum_probs=153.5
Q ss_pred EEEEeCCCCcee-----EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 91 IRLWDIANRRTV-----CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 91 i~iwd~~~~~~~-----~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
..-|+.+..... ..+++|.+.|++++|+.||++|++++.|++|++|+++....... ..+.....-..
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~nve~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQNVEYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhccccCCC
Confidence 445555444332 34689999999999999999999999999999999976432211 11222222235
Q ss_pred eEEEeeccCCCEEEEe---CCeEEEEeCCCCcc---e------e---eeecCCCceEEEEEcCCCCcEEEEEecCCcEEE
Q 013873 166 FWAVDHQWEGDLFATA---GAQVDIWNHNRSQP---I------N---SFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~---~------~---~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 230 (434)
.+.+.|.||-..++.. ++.+++|-+...+. . . .-..|.-.+..+-....+ .++++++.|..|.+
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~l 213 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICL 213 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEE
Confidence 5678899988765544 34588887643221 1 0 011234456666665555 89999999999999
Q ss_pred EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---Ce---
Q 013873 231 YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG---GR--- 304 (434)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~--- 304 (434)
|+++ ++.+..+ ......-+..+.||+|+++++++.--.|++|.+-- |.
T Consensus 214 w~lk-Gq~L~~i-------------------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe 267 (420)
T KOG2096|consen 214 WDLK-GQLLQSI-------------------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE 267 (420)
T ss_pred EecC-Cceeeee-------------------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh
Confidence 9998 5444433 12233445678999999999999999999998632 21
Q ss_pred --eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 305 --SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 305 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
.... ..+|.+.|..++|+++++.+++.+.||.++|||++-
T Consensus 268 v~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 268 VKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 1122 345668999999999999999999999999999863
No 159
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=8.2e-20 Score=166.12 Aligned_cols=256 Identities=15% Similarity=0.189 Sum_probs=179.0
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce--eEE----eeccCCCeeEEEEcCCCC--eEEEeeCCCcEEEe
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQ----YSGHQGAVRGLTVSTDGR--ILVSCGTDCTVKLW 136 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~----~~~h~~~v~~i~~~~~~~--~l~s~~~dg~v~iw 136 (434)
-...|+|+.|+|..+++++.|+.+|+|.+||+..+.. ... ...|..+++.+.|..+.. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3578999999999889999999999999999987754 222 246889999999987544 49999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCC---C-----cceeeeecCCCc
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNR---S-----QPINSFQWGTDT 205 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~---~-----~~~~~~~~~~~~ 205 (434)
+++..........................+.+++|.+.. ..++.|. |.|..-+-.. . +....+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876554322211111111111112223456677777643 3344443 5554422221 1 224456678899
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEcc-CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC-
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLR-MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG- 283 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~- 283 (434)
|.++.++|-+..+|++++ |.+++||... ...+.. .+..+...+++++|||..
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~-------------------------~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL-------------------------SLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcch-------------------------hhhhccceeeeeEEcCcCc
Confidence 999999999977777777 9999999976 333332 223566779999999954
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeEEec-cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 284 REFVTGSYDRTIRIFQYNGGRSREIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
..|+++..||.|.+||+........... .+....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5688888899999999976543333211 11356778889999999999999999999999643
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=5.5e-21 Score=167.88 Aligned_cols=285 Identities=19% Similarity=0.234 Sum_probs=194.1
Q ss_pred CCCCeEE--EEeCC--CCCceEEeeeCCCcEEEEeCCCCce------eEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 65 HRDGISC--MAKNP--NYLKGFFSGSMDGDIRLWDIANRRT------VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 65 h~~~V~~--~~~~~--~~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
|.-++.- ..|++ ....+|+.+..||.|.++|...... +..+..|...|..+.|.|....|++++.|.+++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 3444444 45554 3347899999999999999765432 345678999999999999778999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCc-----------------
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQ----------------- 194 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~----------------- 194 (434)
.||+....+. .......|...+.+++|.+... .|++|+ |.+.|||++-..
T Consensus 126 ~Wdvk~s~l~----------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 126 PWDVKTSRLV----------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred eeeeccceee----------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 9999888653 2224567778889999998664 566665 569999986422
Q ss_pred ---c-------eeeeecCCCceEE---EEEcCCCCcEEEEEec-CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 195 ---P-------INSFQWGTDTVIS---VRFNPAEPNVLATTAS-DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 195 ---~-------~~~~~~~~~~i~~---i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
+ +..-..+...|.+ +.+..|+ ..|++++. |+.|++||++.........-.+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~------------- 261 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGS------------- 261 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcc-------------
Confidence 0 1111122333444 4444455 67777776 99999999998765543211000
Q ss_pred ccceeeeeCc---ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee--eEEeccCCccE-EEEEEcCCCCEEEEeeC
Q 013873 261 DEAKCVHMGH---ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR--EIYHTKRMQRV-FCVKFSCDASYVISGSD 334 (434)
Q Consensus 261 ~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v-~~~~~s~~~~~l~s~~~ 334 (434)
..+..| .-.+.++.....|.+|++.+.|+.|++|++.+.... ..+........ ..-..+||+.+|++|+.
T Consensus 262 ----~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 262 ----DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred ----cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 011112 346778888888899888888999999999865432 22222211111 12346899999999999
Q ss_pred CCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 335 DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 335 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
|+..++|.+.+.+.-- ....+|..+|..+.|.|..-..+..+.
T Consensus 338 d~~ayiw~vs~~e~~~----------------~~l~Ght~eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 338 DEQAYIWVVSSPEAPP----------------ALLLGHTREVTTVRWLPSATTPVATCS 380 (720)
T ss_pred CcceeeeeecCccCCh----------------hhhhCcceEEEEEeeccccCCCceeec
Confidence 9999999998765422 123478888999999887766555543
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1e-21 Score=167.75 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=184.0
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhcccccc--ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARPFI--GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 108 (434)
-+.|..+.+-..-......+|++.+.... ..|..-.-...+++.+||. ++.++++.||.|.|||+.+...++.|++|
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCC
Confidence 35566666655555666778888654432 3344444678889999998 99999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VD 186 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~ 186 (434)
++.+.||.++++|..|-+||-|.+|+-||++.+. ........+.|.++..+|++.+++.+-.. +.
T Consensus 551 tDGascIdis~dGtklWTGGlDntvRcWDlregr-------------qlqqhdF~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR-------------QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred CCCceeEEecCCCceeecCCCccceeehhhhhhh-------------hhhhhhhhhhheecccCCCccceeeecccCcEE
Confidence 9999999999999999999999999999998874 33344556788999999999999998754 44
Q ss_pred EEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
+..... .....+..|.+.|.++.|.+.| ..|++.+.|..+..|...-+..+...
T Consensus 618 vlh~sk-p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqs------------------------ 671 (705)
T KOG0639|consen 618 VLHTSK-PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS------------------------ 671 (705)
T ss_pred EEecCC-ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccceeec------------------------
Confidence 444332 3345566688999999999998 89999999999999988766544332
Q ss_pred eeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 267 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 267 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
.....|.++.+|-|.++++||+.|....||.+
T Consensus 672 --kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 --KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 45678999999999999999999998888865
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=5.1e-21 Score=161.69 Aligned_cols=288 Identities=19% Similarity=0.215 Sum_probs=205.4
Q ss_pred ccCCCCCCChhhh--hhhHHHHHHHHhhhhc----cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC
Q 013873 26 HNYDPNLRPQEKA--VEYVRALTAAKLEKIF----ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR 99 (434)
Q Consensus 26 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 99 (434)
|.+.-++||.+.. .+...-.+.+-+|++- ..+-+..+.+|..+|.++.|+|.+...+++.|.||+|++-|++++
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 3444457776662 2334445566677772 233456678999999999999998899999999999999999877
Q ss_pred ce--eEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-
Q 013873 100 RT--VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD- 176 (434)
Q Consensus 100 ~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (434)
.. +..+......+..+.|+.+...++.++.=|...+||++++.. .......+...|..++++|-..
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-----------~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-----------EYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-----------cchhhhhhhcccceeecCCCCch
Confidence 54 333333456677888888888888888888999999987742 2222333455889999999765
Q ss_pred EEEEeC--CeEEEEeCCCCc----ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc----CCCcceEEEeee
Q 013873 177 LFATAG--AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR----MSSPARKVIMRA 246 (434)
Q Consensus 177 ~~~~~~--~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~ 246 (434)
++++++ ++.+|||++.-. ++...-.|...|.+..|+|.+.. |++.+.|..|++||.. ...+...+....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccC
Confidence 455555 569999998643 23444568899999999999966 8899999999999984 222322221000
Q ss_pred cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE-EEEcCC
Q 013873 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC-VKFSCD 325 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~ 325 (434)
. .+.--......|.|+..++++|..-..|-|||-..++.+..++......|.+ ..|+|-
T Consensus 416 ------------~--------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 416 ------------R--------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred ------------c--------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence 0 0111123456899999999999999999999999998777766655445665 479998
Q ss_pred CC-EEEEeeCCCcEEEeecCc
Q 013873 326 AS-YVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 326 ~~-~l~s~~~dg~v~vw~~~~ 345 (434)
+. +++.|+..|.|+||--..
T Consensus 476 ~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccceeccCCccceEEEEecCC
Confidence 77 444455688899886543
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-19 Score=139.41 Aligned_cols=249 Identities=16% Similarity=0.178 Sum_probs=175.2
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----------ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----------RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
.|.+-+++|.+ ++|++|..+|+|.+..+.+. ..+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 45666789998 99999999999999987632 2345568999999999998 34777766 59999998
Q ss_pred CCCCCCCCCCCCCCCCCCceeE-EEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAV-YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
.+...........-....+... ...-..|+++...|..+-++.++ +.++-||+++++....+++|.+.+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 7543321111110000111111 11224567788887655444433 55999999999999999999999999988444
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc-cCeEEEEEccCCCEEEEEeCCC
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE-SAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
. ..+++|+.||++++||.++.+....+-. ........+|. ..|.+++- +..++++|+ ..
T Consensus 168 ~-~qilsG~EDGtvRvWd~kt~k~v~~ie~----------------yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp 227 (325)
T KOG0649|consen 168 N-GQILSGAEDGTVRVWDTKTQKHVSMIEP----------------YKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GP 227 (325)
T ss_pred C-cceeecCCCccEEEEeccccceeEEecc----------------ccChhhcCcccCceeEEEec--cCceEEecC-CC
Confidence 4 4577999999999999999887665521 11111222333 45777776 556888877 56
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.+.+|.+++.++..++... .++..+.|..| .+++++....|.-|.+.
T Consensus 228 ~lslwhLrsse~t~vfpip--a~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP--ARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceeEEeccCCCceEEEecc--cceeEeeeecc--eEEEeccccceeeeeec
Confidence 6999999999988887655 67888988644 67778877788888775
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=149.23 Aligned_cols=232 Identities=18% Similarity=0.273 Sum_probs=172.4
Q ss_pred eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEe
Q 013873 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWN 189 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d 189 (434)
..|+.|++.|.+||+|+.||.|.|||+.+.. .......|..++.+++|+++|+.+++++. .+.+||
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 7899999999999999999999999998874 23334456678999999999999999885 499999
Q ss_pred CCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC----------------------CcceEEEeeec
Q 013873 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS----------------------SPARKVIMRAN 247 (434)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------~~~~~~~~~~~ 247 (434)
+..+.++..+.. .++|..+.|+|...+.+++.-.+..-.+-++..+ .....++..++
T Consensus 94 l~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 94 LLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred ccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec
Confidence 999999988886 6889999999987666666554444444443321 22334566678
Q ss_pred CceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee----eEE--e----ccCCccE
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR----EIY--H----TKRMQRV 317 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~----~~~--~----~~~~~~v 317 (434)
..+.+.+|+.....-...........|..+-++..|+.|+.-+.|..|+.|+++.-... ..- + .-+...-
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 88888888877663322222222467889999999999999999999999998621110 000 0 0011233
Q ss_pred EEEEEcCCCCEEEEeeC-CCcEEEeecCcccccccCChhh
Q 013873 318 FCVKFSCDASYVISGSD-DTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
.+++|+.+|.|+++|+. ...++||.-..|.++..+++..
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 57899999999988774 5679999999999999998644
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=152.53 Aligned_cols=233 Identities=12% Similarity=0.157 Sum_probs=175.9
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeCCe--E
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAGAQ--V 185 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--i 185 (434)
.++|+++.|+|....|++||.||+++||.++.... .......-...++.+..|.|+|. .+++++.. +
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N----------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN----------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC----------hhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 47899999999999999999999999999976532 12233334466889999999999 66666643 8
Q ss_pred EEEeCCCCccee--eeecC-CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 186 DIWNHNRSQPIN--SFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 186 ~i~d~~~~~~~~--~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
+.||+.+.+... ...++ ...+....+++++ ++++..+..|.|.+....++..+..+.
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K------------------- 342 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK------------------- 342 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-------------------
Confidence 999998875432 22222 3356778889988 789999999999999988887776652
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
-.+.|..++|+.+|+.|++++.+|.|.+||++...++..+.....-.-++++.++++.|||+|+..|.|.|||
T Consensus 343 -------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 343 -------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 3678999999999999999999999999999999888888655444567888899999999999999999999
Q ss_pred cCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 343 AKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
.++...-..-.| .. ..-.....|+.+.|.+.-..+.
T Consensus 416 ~~s~~~s~~PkP--ik---------~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 416 GNSCFASTNPKP--IK---------TVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred cchhhccCCCCc--hh---------hhhhhheeeeeeeeCcchhhhh
Confidence 776432221111 11 1113345667777766655444
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.4e-19 Score=167.94 Aligned_cols=287 Identities=18% Similarity=0.305 Sum_probs=196.9
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc---CCCeeEEEEcC--CCCeEEEeeCCCcEEEeeC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH---QGAVRGLTVST--DGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~i~~~~--~~~~l~s~~~dg~v~iwd~ 138 (434)
+....-..+.|+|-. ..+++++..-.|+|||.+.++.+..|..+ ...|+.+.+.. |..++++|+.||.|+||+-
T Consensus 1062 ~n~~~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred cCCCCCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344456778889887 77888887779999999999988777643 35788888865 5568999999999999985
Q ss_pred CCCC-----CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC-CCceEEEE
Q 013873 139 PVAT-----LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG-TDTVISVR 210 (434)
Q Consensus 139 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~-~~~i~~i~ 210 (434)
.... ++...... ..... ...+.-.-++|......+.++| ..|+|||.........+... ...++++.
T Consensus 1141 y~~~~~~~eLVTaw~~L----s~~~~-~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSL----SDQLP-GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred cccccCCceeEEeeccc----cccCc-cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 3321 11111000 00000 0011113456665544444444 45999999988877766543 44677777
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC--eEEEEEccCCCE-EE
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA--VMDIDYSPTGRE-FV 287 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~sp~~~~-l~ 287 (434)
-+...++++++|..||.|++||.+...+. ..+.....|... |..+.+.+.|-- |+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------s~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------SLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCcc----------------------ccceeecccCCcccceeEEeecCCCccee
Confidence 66656689999999999999999876543 223345577776 999999987654 99
Q ss_pred EEeCCCcEEEEeCCCCeeeeEE--eccC--CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHH
Q 013873 288 TGSYDRTIRIFQYNGGRSREIY--HTKR--MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~~~~~~~--~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
+|+.||.|++||++.......+ ..+. .+.++++..++....+|+|+. +.|+||++. |+++..+.....
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~------ 1345 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPG------ 1345 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcc------
Confidence 9999999999999975222221 2211 235999999999999999998 899999985 566666652211
Q ss_pred HHHHHhhccchhhhhhhhccCCChHHH
Q 013873 364 EAVKNRYKHLPEIKRIVRHRHLPKPIY 390 (434)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~ 390 (434)
.+. ...+.+.+++|||....++.
T Consensus 1346 -F~~---q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1346 -FMG---QRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred -ccc---CcCCCcceeeecchhHhhhh
Confidence 111 22345589999999876543
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.9e-19 Score=149.59 Aligned_cols=228 Identities=20% Similarity=0.241 Sum_probs=170.3
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-------ceeEEeeccCCCeeEEEEcCC-CCeEEEeeCCCc
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCT 132 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~ 132 (434)
.+.||+++|..++|+|.+...+|+||.|.+|.||.+..+ +++..+.+|...|--+.|+|. .+.|+++|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 468999999999999988799999999999999998754 446778999999999999994 458899999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCCC-ceEEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTD-TVISV 209 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~-~i~~i 209 (434)
|.+||+.++. ......|...++++.|+.+|.++++... .|+|||.++++.+..-.+|.+ .-..+
T Consensus 156 v~iWnv~tge-------------ali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 156 VSIWNVGTGE-------------ALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred EEEEeccCCc-------------eeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 9999999884 2333448889999999999999999874 599999999999988877765 34456
Q ss_pred EEcCCCCcEEEEEe---cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 210 RFNPAEPNVLATTA---SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 210 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
.|..++ .++.||- ++..+.+||....+....+. . ....+.|.---|.||.+.+
T Consensus 223 ifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~----------------------e-lDtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 223 IFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQ----------------------E-LDTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred EEeccC-ceeeeccccccccceeccCcccccCcceeE----------------------E-eccCCceEEeeecCCCCEE
Confidence 677777 4555553 36789999876554332111 1 1234566666788888876
Q ss_pred EEE-eCCCcEEEEeCCCCeeeeEEec--cCCccEEEEEEcCC
Q 013873 287 VTG-SYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCD 325 (434)
Q Consensus 287 ~~~-~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~ 325 (434)
+.+ -.|+.|+.|.+....+...+.. ....+-..+.|-|.
T Consensus 279 Yl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 554 4699999999987764333311 11133445666554
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=159.39 Aligned_cols=209 Identities=20% Similarity=0.318 Sum_probs=167.9
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+|+|.-|+++|.||.|++|.-. +.+ ....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GML------------RStl 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GML------------RSTV 141 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chH------------HHHH
Confidence 5688899999999998 5677788889999999999999999999999999999999843 321 1112
Q ss_pred EEecCceEEEeeccCCCE-EEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 160 YVWKNSFWAVDHQWEGDL-FATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
.....++.|++|.|+..- +.+.++.+.|=.+.....+...+.|.+-|.++.|++.. +++++|+.|-..++||-.....
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~L 220 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANL 220 (737)
T ss_pred hhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCccc
Confidence 234568899999998765 55556778888888888888899999999999999988 8999999999999999653321
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEE
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 318 (434)
..-..|..+|++++|+|+ +.++.++. ++++ +.....+.|.
T Consensus 221 --------------------------f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSif 260 (737)
T KOG1524|consen 221 --------------------------FTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIF 260 (737)
T ss_pred --------------------------ccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceE
Confidence 122378999999999999 66666663 3344 4444557899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 319 CVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.++||+||..+++|+..|.+.+=.+
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeee
Confidence 9999999999999999998766443
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.6e-19 Score=145.28 Aligned_cols=262 Identities=13% Similarity=0.153 Sum_probs=179.5
Q ss_pred CCChhhhhhhHHHHHHHHhhhhc----cccccccccCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCC--------
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIF----ARPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIAN-------- 98 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~-------- 98 (434)
+.+.++..+...+....++|+.. +..+....+.|.+.|..+.|.+ ..++.+|+++.|+++.||.-..
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~ 100 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR 100 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence 44556777777777788888742 2234566789999999999954 4449999999999999998521
Q ss_pred -CceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCC-CceeEEEecCceEEEeeccC
Q 013873 99 -RRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS-EPLAVYVWKNSFWAVDHQWE 174 (434)
Q Consensus 99 -~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 174 (434)
.....++....+.|++++|.| -|-.|++++.||.++||+...............-. .............|+.|++.
T Consensus 101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s 180 (361)
T KOG2445|consen 101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS 180 (361)
T ss_pred eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccc
Confidence 123455677888999999999 57789999999999999975543322211111000 01111123446677888764
Q ss_pred C---CEEEEeC-C------eEEEEeCCCC----cceeeeecCCCceEEEEEcCCCC---cEEEEEecCCcEEEEEccCCC
Q 013873 175 G---DLFATAG-A------QVDIWNHNRS----QPINSFQWGTDTVISVRFNPAEP---NVLATTASDRSITLYDLRMSS 237 (434)
Q Consensus 175 ~---~~~~~~~-~------~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 237 (434)
. .+++.+. . .+.||..... ..+..+..|..+|++++|.|+-+ ++|++++.|| |+||.+....
T Consensus 181 r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 181 RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred cccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 3 4566554 2 5888876543 35677788999999999999753 5899999999 9999997532
Q ss_pred cceE--EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 238 PARK--VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
.... -........ +..-..+..+.+|.+.|..+.|+-.|..|++.|.||+|++|...
T Consensus 260 s~i~~ee~~~~~~~~-------~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMT-------DLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred chhhhhcccCCCCcc-------ccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1100 000000000 00112233466899999999999999999999999999999764
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=4.3e-21 Score=173.50 Aligned_cols=275 Identities=19% Similarity=0.287 Sum_probs=208.1
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.+++.|.||.++|.|+.|...| .++++|+.|..++||..+++.++....||.+.|+.++.+.+..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 4567789999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceee---ee-cCCCceEEEEEc
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINS---FQ-WGTDTVISVRFN 212 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~-~~~~~i~~i~~~ 212 (434)
.+..+.. ......+.+.+++++|+|-. -...+|++++||.+-.-.+.. .. .....+.++.|.
T Consensus 260 rl~~~~p------------vsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 260 RLPDGAP------------VSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred ecCCCch------------HHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 9988843 33345667899999999966 122347899999872111111 01 113456666776
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCc--ceEEEee-----------ecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSP--ARKVIMR-----------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
..+ .-++||+.|+.-..|.+..... ....... ...+..+..|+... +.......+|...+..+.+
T Consensus 326 ~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 326 NNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred ccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeee
Confidence 666 6788999999888887653221 1111111 22222333333322 2334456689999999999
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 280 SP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 280 sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
+| +.....+++.||...|||+-.|.++..+..+| ..+...+||+||..++....-|.++|....-++..
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 99 55567789999999999999999888887666 77888999999999999888899999887655543
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=150.52 Aligned_cols=296 Identities=16% Similarity=0.198 Sum_probs=205.4
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC------CceeEEee-ccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------RRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
.+.+.+|.+.|+++.|+.++ .+|++|+.|..+++|+++. .+++.... .|...|.|++|.....++++|+.++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 35678999999999999998 9999999999999999763 34454443 3558999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC---ceEEEeeccCCCEEEEeC--CeEEEEeCCCCc-ceeee--ecCC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN---SFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ-PINSF--QWGT 203 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~~--~~~~ 203 (434)
+|.+.|+++.+ .+.+..+.. .++.+..+|..+.+++.. +.|.+||.+... ++..+ ....
T Consensus 128 ~VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 128 TVIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEeeecccce-------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999998763 344444443 788999999888777765 569999998755 33222 2234
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
.....+.|+|..+.+|++.+..+-+.+||.+........ +.... -+......-.++.|+|+|
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~------------~~~~~------~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ------------RSMFK------GLPQENTEWMGSLWSPSG 256 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHh------------hhccc------cCcccchhhhheeeCCCC
Confidence 567889999999999999999999999999876432110 00000 001112223568899999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeEEeccC------CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh--h
Q 013873 284 REFVTGSYDRTIRIFQYNGGRSREIYHTKR------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP--R 355 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~ 355 (434)
+.|++--....-.+||+-+..+......+. ...+.+++|..|.. +++|+.+-.|++|.+.....-.-|.. +
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc
Confidence 999888777777789988766544332222 13466788876654 99999999999999875444333211 1
Q ss_pred ----hhhhhHHHHHHHHhhccchhhhhhhhccCCCh
Q 013873 356 ----EQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPK 387 (434)
Q Consensus 356 ----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 387 (434)
....+.....+....+|...++.+-|.|+...
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcce
Confidence 11111112223333466666666666666543
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=3.7e-19 Score=147.89 Aligned_cols=172 Identities=19% Similarity=0.357 Sum_probs=144.1
Q ss_pred eeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC
Q 013873 105 YSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183 (434)
Q Consensus 105 ~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
+.+|+++|..++|+| +...||+|+.|.+|.||.+..+.+..
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------------------------------------- 118 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------------------------------------- 118 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--------------------------------------
Confidence 568999999999999 67789999999999999997664321
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA 263 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
.-.+++..+.+|...|.-++|+|...++|++++.|.+|.+|++.++.....+
T Consensus 119 -------~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--------------------- 170 (472)
T KOG0303|consen 119 -------DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--------------------- 170 (472)
T ss_pred -------CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec---------------------
Confidence 1125677788999999999999999999999999999999999988766544
Q ss_pred eeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee---CCCcEEE
Q 013873 264 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS---DDTNLRL 340 (434)
Q Consensus 264 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~v~v 340 (434)
.|...|.++.|+.||.+|++.+.|..|+|||.++++.+.....|....-..+.|-.+|.++.||- ++..+.+
T Consensus 171 -----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 171 -----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIAL 245 (472)
T ss_pred -----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceec
Confidence 59999999999999999999999999999999999988877555555566778888998555554 4778999
Q ss_pred eecCccc
Q 013873 341 WKAKASE 347 (434)
Q Consensus 341 w~~~~~~ 347 (434)
||..+.+
T Consensus 246 wdp~nl~ 252 (472)
T KOG0303|consen 246 WDPNNLE 252 (472)
T ss_pred cCccccc
Confidence 9876543
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=156.90 Aligned_cols=238 Identities=17% Similarity=0.283 Sum_probs=171.0
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe-eccCCCeeEEEEcC--CCCeEEEeeCCCcEE
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVST--DGRILVSCGTDCTVK 134 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~ 134 (434)
+-..|.||++.|+|++|+.+| .+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-| +...+++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345789999999999999999 99999999999999999888887776 58999999999998 567899999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
++|+...+.-.. |-.-......+..|...|..++..|+
T Consensus 121 lfdl~~~~~~~~------------------------------------------d~~~~~~~~~~~cht~rVKria~~p~ 158 (758)
T KOG1310|consen 121 LFDLDSSKEGGM------------------------------------------DHGMEETTRCWSCHTDRVKRIATAPN 158 (758)
T ss_pred EEeccccccccc------------------------------------------ccCccchhhhhhhhhhhhhheecCCC
Confidence 999975321000 00112334456678889999999999
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCC
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDR 293 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~ 293 (434)
+++.|.+++.||+|+-||++.......-. +.. .....+.+.--...+++++|. ..+|++|+.|-
T Consensus 159 ~PhtfwsasEDGtirQyDiREph~c~p~~-----~~~----------~~l~ny~~~lielk~ltisp~rp~~laVGgsdp 223 (758)
T KOG1310|consen 159 GPHTFWSASEDGTIRQYDIREPHVCNPDE-----DCP----------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDP 223 (758)
T ss_pred CCceEEEecCCcceeeecccCCccCCccc-----ccc----------HHHHHhchhhheeeeeeecCCCCceEEecCCCc
Confidence 99999999999999999999854332110 000 000000011234678999994 56899999999
Q ss_pred cEEEEeCCC--------Ce----------eeeEEeccCC-----------ccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 294 TIRIFQYNG--------GR----------SREIYHTKRM-----------QRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 294 ~i~iwd~~~--------~~----------~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
..++||.+. +. +..-+...|. ..++-+.|+|+|.-|++.-..-.|+++|+.
T Consensus 224 farLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 224 FARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred hhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 999999431 11 1112211111 125668899999866654445589999999
Q ss_pred cccccccCC
Q 013873 345 ASEQLGVLH 353 (434)
Q Consensus 345 ~~~~~~~~~ 353 (434)
.++....+.
T Consensus 304 ~~~~~~~y~ 312 (758)
T KOG1310|consen 304 EDKSPTPYF 312 (758)
T ss_pred CCCCceeec
Confidence 887765443
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.3e-17 Score=137.72 Aligned_cols=239 Identities=15% Similarity=0.251 Sum_probs=175.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC--cEEEeeCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLWNVPVAT 142 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~v~iwd~~~~~ 142 (434)
....+..+.|+.+. ..|..|+.|| .++|+.+..............|.-+-|+. .++|..+.+. .+++.+....
T Consensus 4 ~~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~- 78 (391)
T KOG2110|consen 4 KKPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK- 78 (391)
T ss_pred CCcceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC-
Confidence 45678888899997 8888999888 67888776554322222333454555654 4565555543 4888887654
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecC---CCceEEEEEcCCCCcEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG---TDTVISVRFNPAEPNVL 219 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l 219 (434)
..+........+.++.+..+. +++.-.+.|+|||++..+.+.++..- ...+.++++++.+ .++
T Consensus 79 ------------~~ICe~~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~yl 144 (391)
T KOG2110|consen 79 ------------TTICEIFFPTSILAVRMNRKR-LVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYL 144 (391)
T ss_pred ------------ceEEEEecCCceEEEEEccce-EEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC-ceE
Confidence 344445556677777777554 44445566999999999998887653 3345555555544 455
Q ss_pred EEEe--cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc-EE
Q 013873 220 ATTA--SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IR 296 (434)
Q Consensus 220 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~ 296 (434)
+.-+ ..|.|.+||..+..+...+ ..|.+++.+++|+|+|.+|||++..|+ ||
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I-------------------------~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTI-------------------------NAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEE-------------------------EecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 5433 3588999998877665544 489999999999999999999999997 89
Q ss_pred EEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 297 IFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
||.+.+|+.+..+..+. ...|.+++|+|++.+|++.+..++|+||.+....
T Consensus 200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999988885443 4578999999999999999999999999997654
No 175
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=153.92 Aligned_cols=293 Identities=20% Similarity=0.276 Sum_probs=212.0
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe-eccCCCeeEEEEcC--CCCeEEEeeCCCcE
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVST--DGRILVSCGTDCTV 133 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~--~~~~l~s~~~dg~v 133 (434)
.+...|.+|.+.|+.+.|+..| ..|++|+.|..|.+||+..+.....+ .+|...|....|.| +.+-+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3556789999999999999999 99999999999999999998877665 57999999999988 44679999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeCC--eEEEEeCCCCcceeeeec---CCC---
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAGA--QVDIWNHNRSQPINSFQW---GTD--- 204 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~i~i~d~~~~~~~~~~~~---~~~--- 204 (434)
++=.+...... ........+.+++..++..|+.. -|.++++ .+.-+|++...+...+.. +..
T Consensus 212 r~s~i~~t~~~---------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 212 RVSEILETGYV---------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeeeeccccce---------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 99877544332 23555667788888888888764 3445553 477788887766544432 222
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
....++.+|...+.|++|+.|-.+++||.+........- ..+ .. .+........-.|++++|+.++.
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~----------~~~--~f-~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG----------VLD--KF-CPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccc----------hhh--hc-CCccccccCcccceeEEecCCcc
Confidence 567899999998899999999999999987543221100 000 00 00001112345799999998777
Q ss_pred EEEEEeCCCcEEEEeCCCCe------------eeeE-EeccC-CccEEEEEE-cCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 285 EFVTGSYDRTIRIFQYNGGR------------SREI-YHTKR-MQRVFCVKF-SCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~~------------~~~~-~~~~~-~~~v~~~~~-s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
-|.++-.|-.|++|.-.-+. .... +..|. ...|-++-| -|...|+++|+.-|.|.||+-.+++.+
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 66666668889999543221 1112 33332 234777765 778999999999999999999999887
Q ss_pred ccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 350 GVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
..+. +....|++|..||..|.+.
T Consensus 430 ~~Me-----------------gDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 430 RFME-----------------GDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred HHhh-----------------cccceEeccCCCCCCchhh
Confidence 6554 3344899999999999654
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=2.3e-18 Score=137.62 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=167.8
Q ss_pred cCCCCCeEEEEeCCCC----CceEEeeeCCCcEEEEeCCCC--cee--EE-----eeccCCCeeEEEEcC-CCCeEEEee
Q 013873 63 DGHRDGISCMAKNPNY----LKGFFSGSMDGDIRLWDIANR--RTV--CQ-----YSGHQGAVRGLTVST-DGRILVSCG 128 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~----~~~l~sg~~dg~i~iwd~~~~--~~~--~~-----~~~h~~~v~~i~~~~-~~~~l~s~~ 128 (434)
-.|.-+++.+.|.|+. +.+|||.+. .+++|.+... +.. .. -..+..++++..|+. +-+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999984 356676653 7999998732 211 11 124668999999987 667899999
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEE
Q 013873 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
-|-+..|||++++. .+.....+-.|...|..
T Consensus 171 iDTTCTiWdie~~~-------------------------------------------------~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 171 IDTTCTIWDIETGV-------------------------------------------------SGTVKTQLIAHDKEVYD 201 (364)
T ss_pred ccCeEEEEEEeecc-------------------------------------------------ccceeeEEEecCcceeE
Confidence 99999999997651 11223445668899999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE-----------------------EeeecCceeEEEeeCCCCcccee
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-----------------------IMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
++|...+..+|++.+.||.+++||+|...-...+ .........+.+.|.+....+..
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 9999988899999999999999999864321111 11145567888999999999999
Q ss_pred eeeCcccCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee------eeEEeccCCccEEEEEEcC-CCCEEEEeeCCCc
Q 013873 266 VHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRS------REIYHTKRMQRVFCVKFSC-DASYVISGSDDTN 337 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~ 337 (434)
.+.+|.+.|++++|.|. ...|++||.|..+.+||+...-. +..+. ..+.|+.+.|++ .+.+|+.+. +..
T Consensus 282 ~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kk 358 (364)
T KOG0290|consen 282 RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKK 358 (364)
T ss_pred hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCe
Confidence 99999999999999995 56799999999999999975322 12222 236899999996 566777665 344
Q ss_pred EEE
Q 013873 338 LRL 340 (434)
Q Consensus 338 v~v 340 (434)
+.+
T Consensus 359 lei 361 (364)
T KOG0290|consen 359 LEI 361 (364)
T ss_pred eeE
Confidence 444
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=141.22 Aligned_cols=236 Identities=18% Similarity=0.234 Sum_probs=169.7
Q ss_pred CCeEEEEeC-------CCCCceEEeeeCCCcEEEEeCCCCceeEEeec--cCC---CeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 67 DGISCMAKN-------PNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--HQG---AVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 67 ~~V~~~~~~-------~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
..|...+|- |+. .++|+.+.+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|++| ....|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 456666664 555 8899999999999999999998877653 322 45689999999999875 567999
Q ss_pred EeeC-CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 135 LWNV-PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 135 iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
+||+ +.+......... ........+-+.+++++|... .++.++ ..+-||......++..+-+|.+.|+.++
T Consensus 183 vFdt~RpGr~c~vy~t~-----~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTV-----TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred EeeccCCCCCCcchhhh-----hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 9999 444321111100 000222355678899999766 666665 3588888889999999999999999999
Q ss_pred EcCCCCcEEEEEe-cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc---CeEEEEEccCCCEE
Q 013873 211 FNPAEPNVLATTA-SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES---AVMDIDYSPTGREF 286 (434)
Q Consensus 211 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~sp~~~~l 286 (434)
|.++|. .|.+|. .|-.|..||+|..... +..+..|.. .-.-....|+|++|
T Consensus 258 ~~edGn-~lfsGaRk~dkIl~WDiR~~~~p------------------------v~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 258 WCEDGN-KLFSGARKDDKILCWDIRYSRDP------------------------VYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred eccCcC-eecccccCCCeEEEEeehhccch------------------------hhhhhhhccCccceEEEecCCCCcee
Confidence 999995 555655 4778999999864321 111112222 22335678899999
Q ss_pred EEEeCCCcEEEEeCCC-CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC
Q 013873 287 VTGSYDRTIRIFQYNG-GRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 335 (434)
++|+.||.|++||+.. +.....+.. +...++.++++|--.++++++..
T Consensus 313 asG~tdG~V~vwdlk~~gn~~sv~~~-~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVSVTGN-YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eccCCCccEEEEecCCCCCccccccc-ccccccceecCcccceeeeccCc
Confidence 9999999999999987 554444433 34779999999998888877654
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=5.1e-17 Score=151.00 Aligned_cols=254 Identities=31% Similarity=0.523 Sum_probs=199.7
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-eeEEeeccCC-CeeEEEE-cCCCC-eEEEeeC-CCcEEE
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYSGHQG-AVRGLTV-STDGR-ILVSCGT-DCTVKL 135 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~-~~~~~-~l~s~~~-dg~v~i 135 (434)
.+.+|...+.++.+.+.+ ..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 467899999999999998 888888899999999998886 6666766443 7777777 78777 5555455 999999
Q ss_pred eeCCC-CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEE
Q 013873 136 WNVPV-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (434)
Q Consensus 136 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 211 (434)
|+... . ........+...+..+.+++++..++.++ +.+.+|+...+..+..+..|...+.+++|
T Consensus 139 ~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTPG------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCCC------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 99976 2 23444555667788999999998777764 56999999998888899889999999999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
+|++..++++++.|+.|++||......... .+.+|.... ...|+|++.++++++.
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------------TLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEee------------------------ecCCCCcce-eEeECCCCCEEEEecC
Confidence 998853565569999999998763332221 223566654 3389999989999999
Q ss_pred CCcEEEEeCCCCee-eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 292 DRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 292 d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
|+.+++|++..... .... ..|...+.++.|+|++..+++++.|+.+.+|+...........
T Consensus 262 d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred CCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 99999999987665 3334 4446889999999988888889999999999888776655443
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-18 Score=145.29 Aligned_cols=206 Identities=20% Similarity=0.319 Sum_probs=151.6
Q ss_pred EEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCC
Q 013873 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS 149 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 149 (434)
.+++|+.+| ..|++|+.||.+|||++.+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+++++........
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 899999999 999999999999999998888888888899999999999999999999999 999999988733221110
Q ss_pred CCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCC--CcE--EEEEecC
Q 013873 150 TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE--PNV--LATTASD 225 (434)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~--l~~~~~d 225 (434)
. ........+.|+.++ +.+ ++....-
T Consensus 226 ~--------------------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 226 F--------------------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPG 255 (398)
T ss_pred c--------------------------------------------------ccchhhhhceecccCCCceEEEEEecCCC
Confidence 0 001112233333322 111 2222233
Q ss_pred CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 013873 226 RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 305 (434)
Q Consensus 226 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 305 (434)
+.|+.||+....... ....... ......|++++.+++|++++.|+.||.|-|++..+.+.
T Consensus 256 ~~v~~~~~~~w~~~~-------------------~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSN-------------------FLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred CceeEEEeeeecccc-------------------ccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 456666554332210 0001111 12234799999999999999999999999999999888
Q ss_pred eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 306 REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 306 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.......|...|+.+.|+||.+++++.+.|....|..+.-..
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 888877787899999999999999999999999998876533
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=4.2e-18 Score=156.22 Aligned_cols=236 Identities=14% Similarity=0.104 Sum_probs=162.3
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (434)
+..|++||..... ...+..|...+.+..|+|+|+.|+.++.+ ..|.+||+.++.. ........
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------~~l~~~~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------KVVASFRG 248 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------EEEecCCC
Confidence 4789999986554 45667788899999999999999887654 3699999976632 11111222
Q ss_pred ceEEEeeccCCCEEEEe---CCe--EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 165 SFWAVDHQWEGDLFATA---GAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~---~~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
......|+|+|..++.. ++. |.+||+.++.. ..+..+...+.+..|+|++..+++++..+|...+|++......
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 33467899999977654 243 56667766553 4455566678899999999656666667888999987643222
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
... . .+.. ....|+|||++|+.++.++ +.+||+.++......... ....
T Consensus 328 ~~~------------------------l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~ 376 (429)
T PRK01742 328 ASL------------------------V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDES 376 (429)
T ss_pred eEE------------------------e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCC
Confidence 111 0 2222 3578999999998888765 566999888654332221 2356
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecC--cccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAK--ASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
+.|+|||++|++++.+|.+.+|.+. +++.+..+. .+...+...+|+|..+
T Consensus 377 ~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-----------------~~~g~~~~p~wsp~~~ 428 (429)
T PRK01742 377 PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-----------------GSDGQVKFPAWSPYLT 428 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-----------------CCCCCCCCcccCCCCC
Confidence 7899999999999999999988864 455554442 3455667788888654
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-18 Score=152.38 Aligned_cols=265 Identities=20% Similarity=0.233 Sum_probs=181.0
Q ss_pred eEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCE--EE
Q 013873 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL--FA 179 (434)
Q Consensus 102 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 179 (434)
...+.+|++.|.+|+..|.|.+|++|+.||+|+||.+.++ .++......+.|.+++|+|.+.. ++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-------------Rcvr~~~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-------------RCVRTVQFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-------------eEEEEEeecceeEEEEecCCCCceeEE
Confidence 3457899999999999999999999999999999999988 56677777889999999997753 33
Q ss_pred EeC-CeEEEEeCCCC-------------------------------------cceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 180 TAG-AQVDIWNHNRS-------------------------------------QPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 180 ~~~-~~i~i~d~~~~-------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
++. ..+.|.+..-| .-+...-.|...|..+.|+..| .+|++
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlat 538 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLAT 538 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEE
Confidence 332 23333332111 0112233466789999999998 68877
Q ss_pred EecC---CcEEEEEccCCCcceEE-----------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 222 TASD---RSITLYDLRMSSPARKV-----------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 222 ~~~d---g~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
...+ ..|.|+++........+ .+.......+.+||.... ..+..+......|..++++|
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq-elvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ-ELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH-HHHHHHhcCCeeeeeeeecC
Confidence 6654 36888887644221111 111334456667776653 22223334567899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc-ccCChhhhhhh
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL-GVLHPREQRKH 360 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~-~~~~~~~~~~~ 360 (434)
.|..|+.|+.|+.+..||+.-..........|...+++|+|++.-.++++|+.||.+.|+.-.-..-+ +.-. +
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl------i 691 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL------I 691 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCc------e
Confidence 99999999999999999998664433333455588999999999999999999999999964432211 1000 0
Q ss_pred HHHHHHHHhhccch----hhhhhhhccCCChHHH
Q 013873 361 AYHEAVKNRYKHLP----EIKRIVRHRHLPKPIY 390 (434)
Q Consensus 361 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~ 390 (434)
- .+....+|.. .|....|||.+|.++.
T Consensus 692 V---PlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 692 V---PLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred E---eeeeccCceeecccceEeecccCCCceEEe
Confidence 0 0111113333 3677889999998764
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.3e-17 Score=148.50 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=189.3
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC--C--ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--R--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
.|+-.++|.++||.+ +++|+|..||.|.+|.--. + .....+.-|...|++++|+++|.+|++||..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 477779999999998 9999999999999996332 1 2244567789999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeec-----------CCCce
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQW-----------GTDTV 206 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~-----------~~~~i 206 (434)
+++ ........+++..+.++||+.+.+.. ++.|.+....+.....++.+ ..+-.
T Consensus 282 T~~-------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 282 TGK-------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred CCC-------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 873 33344556788899999999876654 45677776544333222222 13456
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee---------------------------------------ec
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---------------------------------------AN 247 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------~~ 247 (434)
+.++++|.. +.++-.+..|.|.+||+.+...+..+... ..
T Consensus 349 t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 778899954 66777888999999999887766655433 00
Q ss_pred CceeEEEeeCCCC----ccceeeeeCcccCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCe---------eeeEEecc
Q 013873 248 EDCNCYSYDSRKL----DEAKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQYNGGR---------SREIYHTK 312 (434)
Q Consensus 248 ~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~ 312 (434)
....+..|.-... .-...+..+|...+...++.+. ...+++++.||.++||-+...+ ........
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 1112222221111 1112234477776666666542 3379999999999999884321 11122223
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc-ccccccC
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA-SEQLGVL 352 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~ 352 (434)
+..++++++|+.||..|+. +.|+.|.+||..+ ..+..++
T Consensus 508 ~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred ccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccc
Confidence 4578999999999986665 5678999999998 4444433
No 183
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.9e-19 Score=145.04 Aligned_cols=232 Identities=18% Similarity=0.283 Sum_probs=163.7
Q ss_pred CCCCCeEEEEeCCC---CCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCC
Q 013873 64 GHRDGISCMAKNPN---YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 64 ~h~~~V~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~ 139 (434)
.|.+....++|+-+ +..+||+|+.-|.|+|.|+.+++....+.+|...|+.|.++|+ .+++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47888888888764 3368999999999999999999999999999999999999995 4689999999999999997
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
+..+ +.. ..-+.+|.+.|.++.|++++ ..+
T Consensus 167 ~~~C-------------v~V------------------------------------fGG~egHrdeVLSvD~~~~g-d~i 196 (385)
T KOG1034|consen 167 TDVC-------------VAV------------------------------------FGGVEGHRDEVLSVDFSLDG-DRI 196 (385)
T ss_pred CCeE-------------EEE------------------------------------ecccccccCcEEEEEEcCCC-Cee
Confidence 6632 111 12246789999999999999 699
Q ss_pred EEEecCCcEEEEEccCCCcceEEEee--ecCceeEEEeeCCCCccce-eeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMR--ANEDCNCYSYDSRKLDEAK-CVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
++++.|.+|.+|++...+....+-.. -..+.+..-+......-+. ....-|..+|-|+.| -|+++++-+-++.|.
T Consensus 197 ~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 197 ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIV 274 (385)
T ss_pred eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEE
Confidence 99999999999999855433222111 0000000000000000000 022357888888888 468999999999999
Q ss_pred EEeC-CCCee-------------eeEEeccCCccEEEE--EEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 297 IFQY-NGGRS-------------REIYHTKRMQRVFCV--KFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 297 iwd~-~~~~~-------------~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
.|.. +-++. ...+.- ....|+-+ +|+|-+++||.|...|.|++||++..+.
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 9976 11111 111111 11344444 5567788999999999999999988765
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2e-18 Score=137.79 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=189.1
Q ss_pred eEEeee----CCCcEEEEeCCCCc--e-eEEeeccCCCeeEEEEcC-CCCeEEEeeCC-------CcEEEeeCCCCCCCC
Q 013873 81 GFFSGS----MDGDIRLWDIANRR--T-VCQYSGHQGAVRGLTVST-DGRILVSCGTD-------CTVKLWNVPVATLTD 145 (434)
Q Consensus 81 ~l~sg~----~dg~i~iwd~~~~~--~-~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d-------g~v~iwd~~~~~~~~ 145 (434)
.|++|. .|+.|.+.+++... . -..|..|.+.|+.++-+| +...|+++..+ -.+.||.+.......
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 345554 36778887776543 2 234667889999999999 55566666442 246799987653321
Q ss_pred CCCCCCCCCCceeEE--EecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcc-eeeee-----cCCCceEEEEEcCC-C
Q 013873 146 SDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQP-INSFQ-----WGTDTVISVRFNPA-E 215 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~-~~~~~-----~~~~~i~~i~~~~~-~ 215 (434)
.. ..-..+... ...+.+.++.|.|++..+++-. ..|.+|++..+.. +..+. .+....++-+|+|. .
T Consensus 108 ~~----~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 108 NS----STLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred cc----chhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 10 001111111 2235789999999998888766 5799999987765 22222 23556788899993 3
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEeCCCc
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~ 294 (434)
.+.++ ...|+++..||+|+......+ ..+|...|..+.|+|+-+ +|++|+.||.
T Consensus 184 gnqv~-tt~d~tl~~~D~RT~~~~~sI------------------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 184 GNQVA-TTSDSTLQFWDLRTMKKNNSI------------------------EDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred cceEE-EeCCCcEEEEEccchhhhcch------------------------hhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 34554 456899999999977655443 247888999999999865 5899999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcccccccCChh----hhhhhHHHH-----
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPR----EQRKHAYHE----- 364 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~----~~~~~~~~~----- 364 (434)
|+|||.+..+....-...|...|.++.|+| ...+|++|+.|..|.+|...+-..-..+... +.......+
T Consensus 239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 999999876654444455668999999999 4567889999999999987654322222110 000000111
Q ss_pred ---HHHHhhccchhhhhhhhccCCChHHHH
Q 013873 365 ---AVKNRYKHLPEIKRIVRHRHLPKPIYK 391 (434)
Q Consensus 365 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~ 391 (434)
.+...-.|...|.+++|+...|.++.+
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeEEE
Confidence 122334678899999999999976543
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=3.8e-19 Score=154.39 Aligned_cols=241 Identities=21% Similarity=0.310 Sum_probs=171.5
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhc--------cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC---
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIF--------ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--- 99 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--- 99 (434)
.++|.+.........+..++|++. ....+.+|++|.++|.|++..+.+ ..+++|+.||+|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCc
Confidence 466667776667777778888872 233578899999999999999998 99999999999999965421
Q ss_pred -------ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeec
Q 013873 100 -------RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ 172 (434)
Q Consensus 100 -------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (434)
.....+.||.+.|+.+++++....|++|+.||++++|+...... ..+........+ .++++.
T Consensus 380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P----------lsvd~~ 448 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP----------LSVDRT 448 (577)
T ss_pred ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc----------ceEeec
Confidence 23456789999999999999989999999999999999865533 111111111111 222222
Q ss_pred cCCCEEEEeCCe---EEEEeCCCCcceeeeecC-------CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE
Q 013873 173 WEGDLFATAGAQ---VDIWNHNRSQPINSFQWG-------TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 173 ~~~~~~~~~~~~---i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 242 (434)
.........+.. -.+++......+..+... ...+.-+.++|.. .+.+++..|+.|+++|..++.+....
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchhe
Confidence 222122222222 223333333333333221 2457778889988 68889999999999999988777654
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
..|...++++++.|+|-+|++++.|+.+++|.+....+....
T Consensus 528 -------------------------~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 528 -------------------------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred -------------------------eeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 368889999999999999999999999999998766554433
No 186
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=2.9e-17 Score=133.20 Aligned_cols=251 Identities=15% Similarity=0.222 Sum_probs=180.9
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC-
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV- 138 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~- 138 (434)
.--..+|+|.+|++|+ ..+|.+.....|.||.....+ ..+++..|...|++++|+|..+.|++|+.|..-++|..
T Consensus 7 ~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3346799999999998 899999999999999876654 57788999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcce----eeeecCCCceEEEEEc
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPI----NSFQWGTDTVISVRFN 212 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~----~~~~~~~~~i~~i~~~ 212 (434)
..+.. .....+..+.....++.|+|.++.|++++|. |.+|-.+...-- ..-..+.+.|++++|+
T Consensus 86 ~~~~W----------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 86 SGGTW----------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred CCCee----------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 44433 3455667788899999999999999999863 666655443211 1222346789999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC-CCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
|++ -+|++|+.|+..++|...-.....+- .---|+.+ .++.+...+....+.+..+.|+|+|+.|+-.+.
T Consensus 156 pnn-VLlaaGs~D~k~rVfSayIK~Vdekp--------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 156 PNN-VLLAAGSTDGKCRVFSAYIKGVDEKP--------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred CCc-ceecccccCcceeEEEEeeeccccCC--------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 987 89999999999999975322111000 00001111 112222223345788999999999999999999
Q ss_pred CCcEEEEeCCCCee-eeEEeccCCccEEEEEEcCCCCEEEEeeCC
Q 013873 292 DRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 292 d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 335 (434)
|+.+.+-|...... ........ -+..++.|-.+.. ++.++.|
T Consensus 227 ds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 227 DSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred CCceEEeecCCCchhccchhhcc-CCceeeEeecCCc-eeecCCC
Confidence 99999999877652 22232333 5677777765443 3444444
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=146.33 Aligned_cols=249 Identities=18% Similarity=0.294 Sum_probs=177.2
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (434)
.+.|....+ ...+.+..-+++...+.++.+|+||.+.|+|++|+.+| ..+|+|+.|..|.+|+-.-.. +..+ .|++
T Consensus 19 afkPDGsqL-~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG-~LkY-SH~D 94 (1081)
T KOG1538|consen 19 AFKPDGTQL-ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG-ILKY-SHND 94 (1081)
T ss_pred EECCCCceE-EEecCCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccc-eeee-ccCC
Confidence 344554443 23344455677888899999999999999999999999 999999999999999854322 2333 4999
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEE
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIW 188 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~ 188 (434)
.|.|+.|+|-...|++|+-. ..-+|..+.. .+........+.+++|..||.+++.|- |+|.|-
T Consensus 95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--------------~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQK--------------SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eeeEeecCchHHHhhhcchh-hccccChhhh--------------hHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 99999999999999998764 5678886543 223333455778999999999998875 678877
Q ss_pred eCCCCcceeeee---cCCCceEEEEEcCCCC----cEEEEEecCCcEEEEEccCCCc-----------------ceEEEe
Q 013873 189 NHNRSQPINSFQ---WGTDTVISVRFNPAEP----NVLATTASDRSITLYDLRMSSP-----------------ARKVIM 244 (434)
Q Consensus 189 d~~~~~~~~~~~---~~~~~i~~i~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-----------------~~~~~~ 244 (434)
+-. +++...+. +.+++|.+++|+|..+ ..+++.....++.+|.+..... ...+.+
T Consensus 160 Nk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 160 NKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred cCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEE
Confidence 543 33333332 3578999999999642 4677788888888888754321 112333
Q ss_pred eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
.+..++.+.+|..... ..-........|+.++..|++++++.|+.||+|..|++-
T Consensus 239 iGGsdk~L~~fTR~Gv--rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGV--RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCCceEEEeecCe--EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 4555555555443321 111222356689999999999999999999999998753
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-17 Score=154.32 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=180.6
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-------ceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
.+.++..|..|+..|..++.++....+|+|||.||+|++||+... +...++......+.++...++++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345788899999999999998876689999999999999997642 2223344456789999999999999999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE-eecc-CCC-EE--EEeCCeEEEEeCCCCcceeeeec-
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV-DHQW-EGD-LF--ATAGAQVDIWNHNRSQPINSFQW- 201 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~--~~~~~~i~i~d~~~~~~~~~~~~- 201 (434)
+.||.|.+.+++........... .........+.+..+ ++.. .+. .+ ++.-+.|..||++....+..++.
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~----~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQ----VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred cCCCeEEEEEccccccccceeee----eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 99999999998763111000000 000000011112222 1111 111 23 33347799999998776655543
Q ss_pred -CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 202 -GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 202 -~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
..+.|++++.+|.+ +.+++|+..|.+.+||+|-..++.... .++..+|+.+..+
T Consensus 1193 ~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~------------------------~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWE------------------------HPARAPIRHVWLC 1247 (1431)
T ss_pred ccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeeccc------------------------CcccCCcceEEee
Confidence 46789999999988 799999999999999999877665442 2455788888887
Q ss_pred cCC---CEEEEEe--CCCcEEEEeCCCCeeeeEEeccCCc------------------cEEEEEEcCCCCEEEEeeCCCc
Q 013873 281 PTG---REFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQ------------------RVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 281 p~~---~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
|-. ...++++ ..+.|.+|++.+|.....+...... .....++..-+.++.+|+.|+.
T Consensus 1248 ~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc
Confidence 732 3444444 4778999999998766555333100 1122333334568899999999
Q ss_pred EEEeecCccccc
Q 013873 338 LRLWKAKASEQL 349 (434)
Q Consensus 338 v~vw~~~~~~~~ 349 (434)
|+.||....+..
T Consensus 1328 IR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1328 IRKWDPTRPEIS 1339 (1431)
T ss_pred eeeccCCCcccc
Confidence 999999776544
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.8e-17 Score=132.55 Aligned_cols=204 Identities=14% Similarity=0.191 Sum_probs=152.8
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce---eEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEEeeC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---VCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNV 138 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd~ 138 (434)
..|..++++..|+.-.++++.+++-|-+..|||++++.. ...+-.|...|..|+|...+ +.|+++|.||.|++||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 346679999999998889999999999999999998733 45677899999999999854 48899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEe-cCceEEEeeccCC-CEEEE---eCCeEEEEeCCCC-cceeeeecCCCceEEEEEc
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEG-DLFAT---AGAQVDIWNHNRS-QPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~---~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~ 212 (434)
+....... +..... ..+...++|+++. +++++ .+..|.|.|++.. .++..++.|.+.|+.++|.
T Consensus 227 R~leHSTI----------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 227 RSLEHSTI----------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred cccccceE----------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec
Confidence 87643211 111111 3456667777644 34443 3467999999875 6789999999999999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeC
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSY 291 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~ 291 (434)
|.....+++++.|..+.+||+...-.. ....+...+ ...+.|+.+.|+| .+.+++.+.
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~-------------------~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~- 355 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRE-------------------NGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF- 355 (364)
T ss_pred CCCCceeeecCCcceEEEEeccccccc-------------------CCCCchhhh-hccceeeeeeecccCCCEEEEEe-
Confidence 999999999999999999999754320 011111122 2467899999997 567888776
Q ss_pred CCcEEE
Q 013873 292 DRTIRI 297 (434)
Q Consensus 292 d~~i~i 297 (434)
++.+.+
T Consensus 356 ~kklei 361 (364)
T KOG0290|consen 356 GKKLEI 361 (364)
T ss_pred cCeeeE
Confidence 344433
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=7e-19 Score=149.25 Aligned_cols=228 Identities=16% Similarity=0.225 Sum_probs=190.3
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
.-..+.++.+| .+|+.|+..|.|-.+|+.+++....+. -...|.++.|..+.+++|++ ....+.|||-.
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-------- 199 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-------- 199 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC--------
Confidence 45678888898 999999999999999999999988887 45789999999998888875 45689999954
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 225 (434)
+..+........+..+.|-|...+|++++ |-+..-|+.+|+.+..+....+.+..++-+|-. .++-+|...
T Consensus 200 ------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~Ghsn 272 (545)
T KOG1272|consen 200 ------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSN 272 (545)
T ss_pred ------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCC
Confidence 23444445566788889999998898887 559999999999999999889999999999987 789999999
Q ss_pred CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 013873 226 RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 305 (434)
Q Consensus 226 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 305 (434)
|+|.+|......++.++ ..|.++|.++++.++|.|++|.|.|..++|||++.-..
T Consensus 273 GtVSlWSP~skePLvKi-------------------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKI-------------------------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred ceEEecCCCCcchHHHH-------------------------HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 99999999888777655 37999999999999999999999999999999998876
Q ss_pred eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 306 REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 306 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+..+... -+...+++|..| +++.+....|.||.
T Consensus 328 l~t~~tp--~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 328 LHTYRTP--HPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cceeecC--CCcccccccccc--ceeeecCCeeeeeh
Confidence 6666553 456778888666 33344455799995
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1e-15 Score=126.67 Aligned_cols=238 Identities=14% Similarity=0.218 Sum_probs=173.1
Q ss_pred CeEEEEeCCCCCceEEeeeCC--CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMD--GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.|.-+-|+. .++|..+.+ ..++++++..+..++.+. ...+|.++.++.+ .|+++-.+ .|.|||+.+.++..
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeeh
Confidence 455566765 455555444 349999999988888876 5678999999654 67776665 49999999887765
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
.+.... .....+.+++.+..+.+++.-+ |+|.+||..+-+++..+..|.+.+.+++|+++| .+|||
T Consensus 121 TI~t~~---------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llAT 190 (391)
T KOG2110|consen 121 TIETTP---------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLAT 190 (391)
T ss_pred hhhccC---------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEE
Confidence 544331 1233456667777777888765 789999999999999999999999999999999 89999
Q ss_pred EecCCc-EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 222 TASDRS-ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 222 ~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
++..|+ ||+|.+.+++....+.- .--...|.+++|+|++.+|++.+..++|.+|.+
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRR-----------------------G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRR-----------------------GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeC-----------------------CceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999997 78999988876665521 011346889999999999999999999999987
Q ss_pred CCCeee-------------------------------------eEEeccCCc--cEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 301 NGGRSR-------------------------------------EIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 301 ~~~~~~-------------------------------------~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
...... ........+ .+..+.-.+....+..++.||.++.|
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y 327 (391)
T KOG2110|consen 248 EKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY 327 (391)
T ss_pred cccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence 532100 000000001 12222223467888999999999999
Q ss_pred ecCc
Q 013873 342 KAKA 345 (434)
Q Consensus 342 ~~~~ 345 (434)
.+..
T Consensus 328 ~l~~ 331 (391)
T KOG2110|consen 328 RLPP 331 (391)
T ss_pred EcCC
Confidence 9864
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=9.2e-16 Score=136.69 Aligned_cols=250 Identities=11% Similarity=0.185 Sum_probs=158.9
Q ss_pred CCCeEEEEeCCCCCceEEee-eCCCcEEEEeCCC-Cce--eEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSG-SMDGDIRLWDIAN-RRT--VCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPV 140 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg-~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iwd~~~ 140 (434)
.+....++++|++ ++|+++ ..++.|.+|++.. +.. +.... ..+....++|+|++++|++++. ++.|.+|+++.
T Consensus 34 ~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 4567789999998 776655 4588999999873 332 22222 3345678999999998888764 88999999964
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCccee-------eeecCCCceEEEE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPIN-------SFQWGTDTVISVR 210 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~-------~~~~~~~~i~~i~ 210 (434)
..... ..............+.++|+++++++.+ +.|.+||+.+...+. .... ......+.
T Consensus 112 ~g~~~---------~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~ 181 (330)
T PRK11028 112 DGIPV---------APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMV 181 (330)
T ss_pred CCCCC---------CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEE
Confidence 32111 1111111223456678899998886654 569999997643221 1111 23457899
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
|+|++..++++...++.|.+|++............ ... ... . ..+......+.++|+|++++++.
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~---------~~~--~p~---~-~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT---------LDM--MPA---D-FSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE---------Eec--CCC---c-CCCCccceeEEECCCCCEEEEec
Confidence 99999544444445899999999743111111100 000 000 0 01122344689999999998885
Q ss_pred C-CCcEEEEeCCCCee----eeEEeccCCccEEEEEEcCCCCEEEEeeC-CCcEEEeecC
Q 013873 291 Y-DRTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSCDASYVISGSD-DTNLRLWKAK 344 (434)
Q Consensus 291 ~-d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~ 344 (434)
. ++.|.+|++..... ....... .....+.|+|||++|++++. ++.|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 4 78999999865331 1111221 34567899999999998775 8999999875
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.2e-17 Score=137.00 Aligned_cols=256 Identities=20% Similarity=0.306 Sum_probs=160.7
Q ss_pred HHHHHHHHhhhhcc---------ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--------C------
Q 013873 42 VRALTAAKLEKIFA---------RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--------N------ 98 (434)
Q Consensus 42 ~~~~~~~~~~~~~~---------~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--------~------ 98 (434)
.-....+++|.+.. -.++..|..|...|+++.|+|+| .+||+|+.+|.|.+|... +
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 33444566666542 34677899999999999999999 999999999999999765 2
Q ss_pred --CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE-----------------
Q 013873 99 --RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV----------------- 159 (434)
Q Consensus 99 --~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------------- 159 (434)
......+.+|...|..++|+|++.++++++.|..+++||+..+.+......+....+....
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccc
Confidence 1234556789999999999999999999999999999999887655333221110000000
Q ss_pred --------------------------------EEe----cCceEEEeeccCCCEEEEeCCe-----------EEEEeCC-
Q 013873 160 --------------------------------YVW----KNSFWAVDHQWEGDLFATAGAQ-----------VDIWNHN- 191 (434)
Q Consensus 160 --------------------------------~~~----~~~~~~~~~~~~~~~~~~~~~~-----------i~i~d~~- 191 (434)
.-+ ..-+..++|+|+|.++++..|. .++|+-.
T Consensus 191 ~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~ 270 (434)
T KOG1009|consen 191 GFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD 270 (434)
T ss_pred eeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc
Confidence 000 0012334566777777665432 1222211
Q ss_pred CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 192 RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 192 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
..++...+.+.......+.|+|- ++=.+..+..=.++ .....+...-.....+|+||.........+..-|-
T Consensus 271 l~rP~~~lp~~~k~~lavr~~pV---y~elrp~~~~~~~~-----~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy 342 (434)
T KOG1009|consen 271 LKRPAARLPSPKKPALAVRFSPV---YYELRPLSSEKFLF-----VLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHY 342 (434)
T ss_pred ccCceeecCCCCcceEEEEeeee---EEEecccccccccc-----ccccceEEEEeecceEEEeccccccceEEEeeeee
Confidence 12334444444444555555441 11111100000011 11223333344455666777666666666666799
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
..|++++|++||..|+..+.||...+--++..++-
T Consensus 343 ~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 99999999999999999999999888777665543
No 194
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=139.53 Aligned_cols=260 Identities=14% Similarity=0.146 Sum_probs=185.8
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
+|....+.|..+|||..++|+|...-.|++||+.+......-.-....|.-.-.+.|-..++.-..|.+|-+...-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 47788899999999977788999999999999987654333221234455555555655666666777777654321110
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeec-cCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
.......-..+.++ |...+++.+. .+|+-+++..|..+..+....+.++++..++-. .+|++
T Consensus 129 ---------------~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~ 192 (703)
T KOG2321|consen 129 ---------------RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLAC 192 (703)
T ss_pred ---------------eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEe
Confidence 00001111122222 3444555554 569999999999999999888999999999977 79999
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
|+.+|.|.+||.+.......+-...+.+.. ........|+++.|+.+|-.+++|+.+|.|.|||++
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~--------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSH--------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCC--------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 999999999999998877766433221100 001123359999999999999999999999999999
Q ss_pred CCeeeeEEeccCCccEEEEEEcCC--CCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 302 GGRSREIYHTKRMQRVFCVKFSCD--ASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
+.+++..-......+|..+.|.+. +..|++. ....++|||-.+|+....+.+
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc
Confidence 998877766655678999999774 4556654 456899999999999887764
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=2.4e-15 Score=139.71 Aligned_cols=265 Identities=28% Similarity=0.503 Sum_probs=198.8
Q ss_pred HHHHHhhhhcccc-ccccccCCCC-CeEEEEe-CCCCCceEEeeeC-CCcEEEEeCCC-CceeEEeeccCCCeeEEEEcC
Q 013873 45 LTAAKLEKIFARP-FIGALDGHRD-GISCMAK-NPNYLKGFFSGSM-DGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVST 119 (434)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~l~~h~~-~V~~~~~-~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~ 119 (434)
.....+|...... .+..+.++.. .+..+.+ ++++...++..+. |+.+.+|+... ......+..|...|.+++|+|
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 165 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165 (466)
T ss_pred CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC
Confidence 3344555555554 6666666443 7888887 7877325555444 99999999988 777888899999999999999
Q ss_pred CCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcc
Q 013873 120 DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQP 195 (434)
Q Consensus 120 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~ 195 (434)
++..+++++. |+.+++|++.... .......+...+.+++++|++. ++++++ +.+.+||...+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTGK------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCCc------------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence 9998888886 9999999997632 1222222577899999999997 555423 5689999887777
Q ss_pred ee-eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 196 IN-SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 196 ~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
+. .+..|.... ...|+|++ .++++++.|+.+++|+++....... ...+|...+
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~------------------------~~~~~~~~v 287 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLR------------------------TLSGHSSSV 287 (466)
T ss_pred EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEE------------------------EEecCCccE
Confidence 77 577777664 33899988 7888999999999999987654111 113678899
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe-ccCCccEEEEEEcCCCCEEEEe-eCCCcEEEeecCccc
Q 013873 275 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-TKRMQRVFCVKFSCDASYVISG-SDDTNLRLWKAKASE 347 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~vw~~~~~~ 347 (434)
.++.|+|++..+++++.|+.+.+||........... ..+...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999999998998889999999999998877665554 3343468899994343455555 678999999998776
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.6e-15 Score=123.22 Aligned_cols=240 Identities=15% Similarity=0.245 Sum_probs=165.4
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCC------CcEEEeeCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTD------CTVKLWNVPV 140 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d------g~v~iwd~~~ 140 (434)
....++|+.|. .-+++|..+| .+||+++.-+....-+.+.+.+.-+...--.++|+ +||.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 34559999997 7788877666 89999876544333232333221111111223444 33333 5799999322
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCC-CCcceeeeecCC--CceEEEEEcCCCCc
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHN-RSQPINSFQWGT--DTVISVRFNPAEPN 217 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~--~~i~~i~~~~~~~~ 217 (434)
..++.......+|.++.+.++. +++.-.+.|.+|... ..+.+..+.... ....+++-+... .
T Consensus 85 -------------~~~i~el~f~~~I~~V~l~r~r-iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~ 149 (346)
T KOG2111|consen 85 -------------ERCIIELSFNSEIKAVKLRRDR-IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK-S 149 (346)
T ss_pred -------------CcEEEEEEeccceeeEEEcCCe-EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc-e
Confidence 4677777788889888887653 555566789999877 455555554322 223333333222 3
Q ss_pred EEEE-EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc-E
Q 013873 218 VLAT-TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-I 295 (434)
Q Consensus 218 ~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i 295 (434)
+|+. |-.-|.|++-|+...... ......+|.+.|.|++++-+|..+||+|..|+ |
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 4443 445689999998765542 11234589999999999999999999999998 8
Q ss_pred EEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 296 RIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+|||..+|..+..+..+ ....|.+++|||++.+|+++|+.|+|+||.+....
T Consensus 207 RIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 207 RIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999999998888544 24679999999999999999999999999987644
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.6e-17 Score=147.15 Aligned_cols=288 Identities=16% Similarity=0.180 Sum_probs=190.7
Q ss_pred hHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCC--ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc
Q 013873 41 YVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYL--KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118 (434)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 118 (434)
+....+.++++...++.++..|.+|..+++.+.+.|... .++++++.||.|++||...+..+.++.. ..++..+.+.
T Consensus 32 ~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~-~~~v~~~~~~ 110 (792)
T KOG1963|consen 32 FLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN-NLPVHALVYK 110 (792)
T ss_pred EEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec-CCceeEEEec
Confidence 455666788889999999999999999999999999864 5677999999999999999999888874 3455555553
Q ss_pred C---CCCeEE-EeeCCCcE-EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCC
Q 013873 119 T---DGRILV-SCGTDCTV-KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNR 192 (434)
Q Consensus 119 ~---~~~~l~-s~~~dg~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~ 192 (434)
| +...++ .+..|-.+ .............+..................-.++..++.|.+.+..- ..+.+|....
T Consensus 111 ~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~ 190 (792)
T KOG1963|consen 111 PAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPK 190 (792)
T ss_pred hhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecc
Confidence 3 111122 22222111 1011100000000000000000000000011124556666666655554 3588888777
Q ss_pred Ccceee----eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 193 SQPINS----FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 193 ~~~~~~----~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
+..... -..|.-.+++.+++|.+ .++++|..||.|.+|.--..+. .......+.
T Consensus 191 ~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~---------------------~~~t~t~lH 248 (792)
T KOG1963|consen 191 HTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD---------------------DSETCTLLH 248 (792)
T ss_pred cceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEecccccc---------------------ccccceEEE
Confidence 541111 12255568999999998 8999999999999996432100 011112344
Q ss_pred CcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 269 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
-|...|++++|+++|.+|++||..|.+.+|.+.+++ ..+.+.-.++|..+.++||+.+.+....|+.|.+-...+...
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 688899999999999999999999999999999988 334344448999999999999999999999999999877666
Q ss_pred cccCC
Q 013873 349 LGVLH 353 (434)
Q Consensus 349 ~~~~~ 353 (434)
..++.
T Consensus 327 k~tIs 331 (792)
T KOG1963|consen 327 KSTIS 331 (792)
T ss_pred hhhcc
Confidence 55554
No 198
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=5.2e-16 Score=129.34 Aligned_cols=252 Identities=17% Similarity=0.200 Sum_probs=186.1
Q ss_pred CCCCeEEEEeCCCCCceEEeee-CCCcEEEEeCCCCceeEE------eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 65 HRDGISCMAKNPNYLKGFFSGS-MDGDIRLWDIANRRTVCQ------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~------~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
-...|+.++|..++..-++.+. .|-.+..+.+........ .....++|..+... + ..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 4567888888877644444444 666777777766554333 23445677766664 3 3788889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE-eCC----eEEEEeCCCCcceeeeecCC---------
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT-AGA----QVDIWNHNRSQPINSFQWGT--------- 203 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~i~i~d~~~~~~~~~~~~~~--------- 203 (434)
...+..- ..+........++..+.-++....+++ ||. .+.|||+...+.+..-+.-.
T Consensus 132 ~k~~d~h---------ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 132 DKSGDLH---------SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred ccCCccc---------cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 9766432 233444444566777777776665555 552 38999999887665544321
Q ss_pred CceEEEEEcCCC-CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC
Q 013873 204 DTVISVRFNPAE-PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 282 (434)
Q Consensus 204 ~~i~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 282 (434)
-.++++.|.+.. .+.|++++.-+.+++||.+.+... +..+.-.+.+++++...|+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP------------------------V~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP------------------------VAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcc------------------------eeEeccccCcceeeeecCC
Confidence 246788888751 378999999999999999865422 1222334778999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
|+++++|..-|.+..||++.++.......+..+.|+++..+|.+++++++|-|..|+|+|+.+.+++..
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 999999999999999999999988886666678999999999999999999999999999999777643
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=3e-17 Score=144.78 Aligned_cols=192 Identities=22% Similarity=0.377 Sum_probs=147.0
Q ss_pred eeCCCcEEEEeCCCCce-----eEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 85 GSMDGDIRLWDIANRRT-----VCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 85 g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
.+..|.|-||+++.... +-.+. ....|+.+.|.| |...|++++.||.|++|.+..+.+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e------------- 664 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE------------- 664 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-------------
Confidence 45578999999875422 22222 456899999999 77899999999999999998764321
Q ss_pred EEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
....+...+..|...|+++.|+|-...+|++++.|-+|++||+++...
T Consensus 665 --------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 665 --------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred --------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 123445567778999999999998888999999999999999988765
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE-eccCCccE
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKRMQRV 317 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v 317 (434)
...+ .+|.+.|.+++|||||+.+++.+.||+|++|+.+++.....- .......-
T Consensus 713 ~~~l-------------------------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 713 YSRL-------------------------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred hhee-------------------------ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcc
Confidence 4443 599999999999999999999999999999998876543221 11112334
Q ss_pred EEEEEcCCCCEEEEeeCC----CcEEEeecCccc
Q 013873 318 FCVKFSCDASYVISGSDD----TNLRLWKAKASE 347 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~~~d----g~v~vw~~~~~~ 347 (434)
-.+.|.-||+++++.+.| ..|.+||.++-.
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 467788899998887765 457788776543
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=135.95 Aligned_cols=262 Identities=18% Similarity=0.300 Sum_probs=185.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
-+.|..+.|.-+....|.....|+.|.+|++...+-...+.....++.+++|+|+|+ .|.+...|-.|.+|.+.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-- 125 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-- 125 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--
Confidence 357888899988745566678899999999999888888888889999999999995 55677789999999997662
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe-----EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ-----VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
.......+..+..++++++|++.+..... +.|........+..+....-..+.+.|+|+| +.|
T Consensus 126 -----------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~l 193 (447)
T KOG4497|consen 126 -----------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWL 193 (447)
T ss_pred -----------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEE
Confidence 33333445566889999999998887632 3444334445556666666678899999998 555
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
+ +||.--.-.+ +.| ...-.+..++|+|.+++|+.|+.|+.+++.+
T Consensus 194 a---------Vwd~~Leykv-------------~aY-------------e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 194 A---------VWDNVLEYKV-------------YAY-------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred E---------Eecchhhhee-------------eee-------------eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 4 5553211110 010 1234688899999999999999999998854
Q ss_pred CCCCeee------------------------------------------------------------eEEe-----ccCC
Q 013873 300 YNGGRSR------------------------------------------------------------EIYH-----TKRM 314 (434)
Q Consensus 300 ~~~~~~~------------------------------------------------------------~~~~-----~~~~ 314 (434)
--+-+.. ..+. ....
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 2210000 0000 0001
Q ss_pred ccEEEEEEcCCCCEEEEeeC--CCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHH
Q 013873 315 QRVFCVKFSCDASYVISGSD--DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKA 392 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 392 (434)
..+.-++|++|..|+++-.+ -+.+-+||++..++-.++ .....|+...|+|..|..+...
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL------------------iQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL------------------IQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh------------------hhccceeEEEeCCCCceEEEEc
Confidence 24667999999999998764 477999999887665544 3456788899999999887665
Q ss_pred HH
Q 013873 393 AS 394 (434)
Q Consensus 393 ~~ 394 (434)
++
T Consensus 381 g~ 382 (447)
T KOG4497|consen 381 GK 382 (447)
T ss_pred CC
Confidence 53
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.1e-17 Score=150.67 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=191.4
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCC---CCCeEEEEeCCC-CCceEEeeeCCCcEEEEeCC-C----Ccee
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGH---RDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIA-N----RRTV 102 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~-~----~~~~ 102 (434)
++|+++..........+.+|+.-....+..|..+ ...|+.+.+-.. ...++++|+.||.|+||+-- + .+.+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 6667666544444445666666555555555433 357888887653 34789999999999999732 2 1222
Q ss_pred EEee---c----cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-C
Q 013873 103 CQYS---G----HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-E 174 (434)
Q Consensus 103 ~~~~---~----h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 174 (434)
..+. + ..+.=.-+.|.....+|+++|.-..|+|||............. ....++++..+. .
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-----------s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-----------SSTLVTALSADLVH 1220 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC-----------CCccceeecccccC
Confidence 2222 1 1111133678776667777777889999999766543322211 223344444332 3
Q ss_pred CCEEEEe--CCeEEEEeCCCCc---ceeeeecCCCc--eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeec
Q 013873 175 GDLFATA--GAQVDIWNHNRSQ---PINSFQWGTDT--VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRAN 247 (434)
Q Consensus 175 ~~~~~~~--~~~i~i~d~~~~~---~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 247 (434)
|+++++| +|.+++||.+... .+...+.|+.. |..+.+.+.|-..|++|+.||.|++||++.......+..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i--- 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI--- 1297 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---
Confidence 5777766 4789999987643 46677778776 999999998866799999999999999998632221110
Q ss_pred CceeEEEeeCCCCccceeeeeCc---ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeE-----EeccCCccEEE
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGH---ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI-----YHTKRMQRVFC 319 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~ 319 (434)
..| .+..+++..+++...+|+|+. +.|+||++........ +.....+.+.|
T Consensus 1298 --------------------v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1298 --------------------VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred --------------------eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcce
Confidence 011 225899999999999999998 9999999875443221 22333467899
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
++|+|..-++|+|+.|..|.||.....+
T Consensus 1357 L~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999999999877654
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=122.98 Aligned_cols=212 Identities=14% Similarity=0.221 Sum_probs=153.1
Q ss_pred CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEe
Q 013873 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (434)
..|.+-+|+|.+++|++|..+|.|.++.+.+...... .............+..+++.+++. +..++..++|.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc--CCCCCcceeeccccCCCeeeeeee-hhheeeccCceEEEee
Confidence 3466678999999999999999999999865432221 111122333335678899999998 5566667778999888
Q ss_pred CCCCcc------eeeee-------cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 190 HNRSQP------INSFQ-------WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 190 ~~~~~~------~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
.+.... +.... ..-..|+++-..|..+.+| .++.|+.++.||+.++...+.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~--------------- 151 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQRE--------------- 151 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEE---------------
Confidence 754321 11111 1124688999999885555 455899999999998866554
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc---------CCccEEEEEEcCCCC
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK---------RMQRVFCVKFSCDAS 327 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~ 327 (434)
+.+|+..|.++.--.....+++|+.||++++||.++++....+... ....|-+++. +..
T Consensus 152 ----------~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 152 ----------YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED 219 (325)
T ss_pred ----------EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence 4699999999998555567999999999999999999987776321 2234556655 566
Q ss_pred EEEEeeCCCcEEEeecCcccccccCC
Q 013873 328 YVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 328 ~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
+|++|+ ...+.+|++++.+...+|.
T Consensus 220 WlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eEEecC-CCceeEEeccCCCceEEEe
Confidence 888776 4579999999999888775
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.1e-14 Score=129.84 Aligned_cols=233 Identities=12% Similarity=0.175 Sum_probs=150.9
Q ss_pred EEeeeCCCcEEEEeCCC-Cc--eeEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEEeeCCC-CCCCCCCCCCCCCCCc
Q 013873 82 FFSGSMDGDIRLWDIAN-RR--TVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPV-ATLTDSDDSTDNSSEP 156 (434)
Q Consensus 82 l~sg~~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~ 156 (434)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +.+ ..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-----------~~ 72 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-----------TF 72 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-----------EE
Confidence 44457789999999964 33 344454 346677899999999887664 588999999863 221 01
Q ss_pred eeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCc----ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 157 LAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
............+.++|+++.+++++ +.+.+|++.... .+..+. +.....+++++|++..++++...++.|.
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 11111122345789999999887764 569999986432 222222 2234677889999966667777789999
Q ss_pred EEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC--Cee-
Q 013873 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNG--GRS- 305 (434)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~--~~~- 305 (434)
+||+.......... .... . .........++|+|+|++++++.. ++.|.+||++. +..
T Consensus 152 v~d~~~~g~l~~~~-----------------~~~~-~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 152 LFTLSDDGHLVAQE-----------------PAEV-T-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred EEEECCCCcccccC-----------------CCce-e-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 99997632211000 0000 0 011233567999999999988876 89999999973 322
Q ss_pred -eeEEec--c---CCccEEEEEEcCCCCEEEEeeC-CCcEEEeecCcc
Q 013873 306 -REIYHT--K---RMQRVFCVKFSCDASYVISGSD-DTNLRLWKAKAS 346 (434)
Q Consensus 306 -~~~~~~--~---~~~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~~~ 346 (434)
...+.. . .......+.++|++++++++.. ++.|.+|++...
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 222211 0 1112346889999999998864 789999998654
No 204
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=9.2e-16 Score=125.77 Aligned_cols=271 Identities=18% Similarity=0.313 Sum_probs=181.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-----eeEEeeccC------------CCeeEEEEcCCCC--eEEE
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQ------------GAVRGLTVSTDGR--ILVS 126 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~--~l~s 126 (434)
.+-|.++.|...| .+||||+.+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 5679999999999 999999999999999754322 223344443 4688999998554 6777
Q ss_pred eeCCCcEEEeeCCCCCCCCCCC---------------CC---------CCCCCceeEEEecCceEEEeeccCCCEEEEeC
Q 013873 127 CGTDCTVKLWNVPVATLTDSDD---------------ST---------DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~---------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
.+.|.+|++|.+.......... .+ ......+....|...+.+++++.|+..+++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 7899999999986543322000 00 00001111122445678999999999999988
Q ss_pred C-eEEEEeCCCCcceee---eecC-----CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEE
Q 013873 183 A-QVDIWNHNRSQPINS---FQWG-----TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCY 253 (434)
Q Consensus 183 ~-~i~i~d~~~~~~~~~---~~~~-----~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (434)
. .|.+|++.-...-.. ++.+ ..-|++..|+|..-++|+-.++.|+|++-|++........ ..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h---------sK 254 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH---------SK 254 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch---------hh
Confidence 6 699999865332211 2222 3468899999999899999999999999999854322110 00
Q ss_pred EeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeeeEEeccCC-----------c---cEE
Q 013873 254 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRM-----------Q---RVF 318 (434)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-----------~---~v~ 318 (434)
++...........+.+--..|..+.|+++|+|+++-.. -+|++||++ ..+++.++..+.. . .-.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 11111111122223344567889999999999998753 679999994 4455555433310 1 234
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 319 CVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.++|+.++.+++||+....+++++...|.
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCc
Confidence 68999999999999999999999965543
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=3.7e-16 Score=135.30 Aligned_cols=189 Identities=16% Similarity=0.275 Sum_probs=133.2
Q ss_pred EeCCeEEEEeCCCCcceeeeec----CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce---EEEeeecCceeE
Q 013873 180 TAGAQVDIWNHNRSQPINSFQW----GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---KVIMRANEDCNC 252 (434)
Q Consensus 180 ~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~ 252 (434)
-..|++.+.|....+....+.. ....++|+.|-|.+..+|+++..+|.+++||........ ...+.......+
T Consensus 192 f~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 192 FTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI 271 (636)
T ss_pred eccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence 3447888888766332221211 247899999999998999999999999999874321111 111111112222
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
..+.......++..+.--.+.|+.++|+|||++||+.+.||.++|||+.+.+++..+..-- +...|++|||||+||++|
T Consensus 272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 272 LTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred eeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceEEEEEcCCccEEEec
Confidence 2222222223333333345689999999999999999999999999999887766654433 679999999999999999
Q ss_pred eCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 333 SDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 333 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
+.|--|.||.+...+.++.=+ +|..-|..++|.|...
T Consensus 351 GEDDLVtVwSf~erRVVARGq-----------------GHkSWVs~VaFDpytt 387 (636)
T KOG2394|consen 351 GEDDLVTVWSFEERRVVARGQ-----------------GHKSWVSVVAFDPYTT 387 (636)
T ss_pred CCcceEEEEEeccceEEEecc-----------------ccccceeeEeeccccc
Confidence 999999999999888775332 6777788888876443
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.6e-15 Score=137.00 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=160.9
Q ss_pred CcEEEEeCCCC-ceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCce
Q 013873 89 GDIRLWDIANR-RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (434)
Q Consensus 89 g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (434)
+.+.||++... .+...+. -...|+++.|+| +..+++.|..+|.|.+||+..+.... ..........+..++
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCcCe
Confidence 47999999876 3444444 568999999999 66788888999999999998775421 112233344556667
Q ss_pred EEEeeccCCC----EEEEeCCeEEEEeCCCCcc------eeeee------cCCCceEEEEEcCCCCcEEEEEecCCcEEE
Q 013873 167 WAVDHQWEGD----LFATAGAQVDIWNHNRSQP------INSFQ------WGTDTVISVRFNPAEPNVLATTASDRSITL 230 (434)
Q Consensus 167 ~~~~~~~~~~----~~~~~~~~i~i~d~~~~~~------~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 230 (434)
..+.|..+.. +.++.+|.|..|+++.-.. ..... .....+++++|.+..++.|++|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 7777655332 2333468899998765322 11111 123468999999999999999999999876
Q ss_pred EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeeeEE
Q 013873 231 YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIY 309 (434)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~ 309 (434)
=+-......... ..+....+..|.++|+.+.++|-+..++..+.|.+|+||... ...++..+
T Consensus 375 ~~r~g~~~~~~~-----------------~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~ 437 (555)
T KOG1587|consen 375 GCRKGYTPAPEV-----------------SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL 437 (555)
T ss_pred EeccCCcccccc-----------------cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh
Confidence 332222221100 012223445789999999999977665555559999999987 44444444
Q ss_pred eccCCccEEEEEEcCCC-CEEEEeeCCCcEEEeecCcccccc
Q 013873 310 HTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
... ...|++++|||.. ..++++..||.|.+||+.....-.
T Consensus 438 ~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 438 DSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred hhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 333 3569999999954 577888889999999997655433
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.3e-16 Score=127.57 Aligned_cols=172 Identities=14% Similarity=0.301 Sum_probs=135.6
Q ss_pred CCeEEEEeCCCCcceeeeecCCCceEEEEEcCC-CCcEEEEEecCCcEEEEEccCCCcceEEEee---------------
Q 013873 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA-EPNVLATTASDRSITLYDLRMSSPARKVIMR--------------- 245 (434)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------- 245 (434)
.|.|++||..+++.+..+.++...+..+.|... +++.+.+++.||+|++||+|.......+...
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 478999999999999999999999999999875 6789999999999999999875332222111
Q ss_pred ----------ecCceeEEEeeCCCCcc-ceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEE--ec
Q 013873 246 ----------ANEDCNCYSYDSRKLDE-AKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIY--HT 311 (434)
Q Consensus 246 ----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~ 311 (434)
...+..+++||.+...+ .......|...|+++.|+| +.++|++|+.||.|.+||+.....-..+ ..
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 34566788999998877 5556678999999999999 5789999999999999999765321111 11
Q ss_pred cCCccEEEEEEcCCC-CEEEEeeCCCcEEEeecCcccccccCC
Q 013873 312 KRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 312 ~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.+.+.|.++.|..++ +.|.+-+..+...+|+++.+.....+.
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 233679999998876 347777888999999999988665554
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.2e-15 Score=122.25 Aligned_cols=250 Identities=13% Similarity=0.168 Sum_probs=167.8
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCC-CeEEEeeCCCcEEEeeCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
+-.+..++|++.- ..+|++..|-.|++||-.+ +....++ .....|+|++|-|.+ +-|+.|+. +-|.+|.......
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 5578899999976 7789999999999999766 4444444 234689999999954 45666665 5689998764433
Q ss_pred CCCC-CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 144 TDSD-DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
.... .........+.....+..+.++.|.+||..+++++ ..|.|||..++..+.......+.+.-+.|+|++ .+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVL 253 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEE
Confidence 2221 11111112223334457899999999999999886 459999999988776654556778899999999 678
Q ss_pred EEEecCCcEEEEEccC-CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 220 ATTASDRSITLYDLRM-SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
+++.-|+..++|.... ....+-. -..+.|...+|+|+|.+|+.... |.-++|
T Consensus 254 faAt~davfrlw~e~q~wt~erw~--------------------------lgsgrvqtacWspcGsfLLf~~s-gsp~ly 306 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWI--------------------------LGSGRVQTACWSPCGSFLLFACS-GSPRLY 306 (445)
T ss_pred EEecccceeeeehhcccceeccee--------------------------ccCCceeeeeecCCCCEEEEEEc-CCceEE
Confidence 8889999999995433 2222211 23448899999999998655442 333455
Q ss_pred eCCCCe------------eeeE---E--------eccCCccEEEEEEcCCCCEEEEeeCC--------CcEEEeecCcc
Q 013873 299 QYNGGR------------SREI---Y--------HTKRMQRVFCVKFSCDASYVISGSDD--------TNLRLWKAKAS 346 (434)
Q Consensus 299 d~~~~~------------~~~~---~--------~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~v~vw~~~~~ 346 (434)
.+.... .... + .....+.+.+++|+|.|.+||+.-.. +.|.+||....
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 432100 0000 0 01113678899999999999986543 33666666544
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-14 Score=119.02 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=166.5
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ce----------eEEeeccCCCeeEEEEcCCCCeEEEeeC-
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RT----------VCQYSGHQGAVRGLTVSTDGRILVSCGT- 129 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~~~- 129 (434)
....|+|++|-|.+...|+.|+..| |.+|..... .. +....+| .+|+++.|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 3568999999999878889998765 899986532 11 1122345 68999999999999998875
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceE
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVI 207 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (434)
|..|.|||.+++..+.. . ....+.+.-+.|+||+.++.++. +..++|...............+.|.
T Consensus 217 sssi~iWdpdtg~~~pL-----------~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq 284 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPL-----------I-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ 284 (445)
T ss_pred cceEEEEcCCCCCcccc-----------c-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence 67899999998864321 1 23346777899999999887765 6689996554433333333466899
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
..+|+|.|..+|++.+..- ++|.+.-......+....+......+-|........- ..--.+++.+++|.|.|.+||
T Consensus 285 tacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEE
Confidence 9999999987777776544 4554433222211111112222222222222111100 011256788999999999999
Q ss_pred EEeCCC--------cEEEEeCCCCeeeeEEecc--CCccEEEEEEcC---CCCEEEEeeCCCcEEEeecC
Q 013873 288 TGSYDR--------TIRIFQYNGGRSREIYHTK--RMQRVFCVKFSC---DASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 288 ~~~~d~--------~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~---~~~~l~s~~~dg~v~vw~~~ 344 (434)
+.-..+ .|.+||.+..-.......+ .......++|+| ++.+|..+=+.|.+.-|++.
T Consensus 362 v~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 362 VIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 875433 3677887654443332111 112244566766 67777777778888887764
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=131.65 Aligned_cols=222 Identities=18% Similarity=0.256 Sum_probs=151.2
Q ss_pred CCCCceEEeeeCCCcEEEEeCCCCceeEEe----eccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQY----SGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 76 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
|.+ --|+.|-..|.|.+.|....+..+.+ ......|+|+.|-|. ...++.+-.+|.+.++|..-..-.
T Consensus 183 ~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------ 255 (636)
T KOG2394|consen 183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------ 255 (636)
T ss_pred CCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence 344 45777777888998887653222211 123478999999994 456777788999999987321100
Q ss_pred CCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC-CCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH-NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
..+. ....+++..+.. ..|-- .+..++..+....+.|..++|+|+| .+||+.+.||.++
T Consensus 256 ---t~p~-----------~~~~k~~~~f~i-----~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLR 315 (636)
T KOG2394|consen 256 ---TAPS-----------YQALKDGDQFAI-----LTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLR 315 (636)
T ss_pred ---CCCc-----------ccccCCCCeeEE-----eeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEE
Confidence 0000 001112222211 11111 1224555555557789999999988 8999999999999
Q ss_pred EEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
|||..+..... ++..--+...|++|||||+||++|+.|..|.||.+...+.+..-
T Consensus 316 vF~fdt~eLlg-------------------------~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 316 IFDFDTQELLG-------------------------VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred EeeccHHHHHH-------------------------HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 99987654432 22234568999999999999999999999999999998887766
Q ss_pred eccCCccEEEEEEcCC-----------------------------------C-------------CEEEEeeCCCcEEEe
Q 013873 310 HTKRMQRVFCVKFSCD-----------------------------------A-------------SYVISGSDDTNLRLW 341 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~-----------------------------------~-------------~~l~s~~~dg~v~vw 341 (434)
+.| .++|+.|+|+|- + -.|.+.+.|-.+.+|
T Consensus 371 qGH-kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLW 449 (636)
T KOG2394|consen 371 QGH-KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLW 449 (636)
T ss_pred ccc-ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEE
Confidence 554 499999999830 1 136677889999999
Q ss_pred ecCcccccc
Q 013873 342 KAKASEQLG 350 (434)
Q Consensus 342 ~~~~~~~~~ 350 (434)
|+....+..
T Consensus 450 DlteD~L~~ 458 (636)
T KOG2394|consen 450 DLTEDVLVP 458 (636)
T ss_pred ecchhhccc
Confidence 998765543
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-15 Score=138.89 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=140.3
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCC---CcEEEEeCCCCce--eEEeeccCCCeeEEEEcCCCCeEEEee-CCCc
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCG-TDCT 132 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~ 132 (434)
...+..|...+...+|+|+| +.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 34466778889999999999 777776543 3699999988754 3333333 44689999999888764 6887
Q ss_pred EEEe--eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCC-cceeeeecCCCce
Q 013873 133 VKLW--NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS-QPINSFQWGTDTV 206 (434)
Q Consensus 133 v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~-~~~~~~~~~~~~i 206 (434)
+.|| |+.++. ..........+....|+|+|..++..+ +...||+++.. .....+ .+..
T Consensus 272 ~~Iy~~d~~~~~-------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 272 LNIYVMGANGGT-------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred EEEEEEECCCCC-------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 7666 444332 122222334566789999999665432 45666665432 122222 2333
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
.+..|+|++ ..++.++.++ +.+||+.++.... + ...+ ....+.|+|||++|
T Consensus 336 ~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~-l------------------------t~~~--~~~~~~~sPdG~~i 386 (429)
T PRK01742 336 YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEV-L------------------------SSTF--LDESPSISPNGIMI 386 (429)
T ss_pred CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEE-e------------------------cCCC--CCCCceECCCCCEE
Confidence 457899999 5666665554 5568987654321 1 0011 12457899999999
Q ss_pred EEEeCCCcEEEEeCC--CCeeeeEEeccCCccEEEEEEcCC
Q 013873 287 VTGSYDRTIRIFQYN--GGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
+.++.++.+.+|++. ++.....+..+ .+.+...+|+|-
T Consensus 387 ~~~s~~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 387 IYSSTQGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSPY 426 (429)
T ss_pred EEEEcCCCceEEEEEECCCCceEEccCC-CCCCCCcccCCC
Confidence 999999988888753 45555555433 366888999984
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=6.5e-15 Score=118.83 Aligned_cols=153 Identities=16% Similarity=0.315 Sum_probs=106.5
Q ss_pred EEeeccCCCEEEEeC------------CeEEEEeCCC-Ccceeeeec-CCCceEEEEEcCCCCcEEEE-EecCCcEEEEE
Q 013873 168 AVDHQWEGDLFATAG------------AQVDIWNHNR-SQPINSFQW-GTDTVISVRFNPAEPNVLAT-TASDRSITLYD 232 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~------------~~i~i~d~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~-~~~dg~i~iwd 232 (434)
.+.|+++|..++.-. +...+|.++. ..+...+.. ..+.|.+++|+|++..++++ |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 566777777655421 2344444422 234444443 34579999999999554333 44678999999
Q ss_pred ccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEE
Q 013873 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIY 309 (434)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~ 309 (434)
++ ...... -+...++.+.|+|+|++|++++.+ |.|.+||.++.+.+...
T Consensus 90 ~~-~~~i~~---------------------------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~ 141 (194)
T PF08662_consen 90 VK-GKKIFS---------------------------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF 141 (194)
T ss_pred Cc-ccEeEe---------------------------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc
Confidence 96 222221 235677889999999999998754 56999999987776555
Q ss_pred eccCCccEEEEEEcCCCCEEEEeeC------CCcEEEeecCcccccccC
Q 013873 310 HTKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~~~~~~~~ 352 (434)
.. ..++.++|+|||++|++++. |+.++||++. |+++...
T Consensus 142 ~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 142 EH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 32 45789999999999998774 7889999995 6666544
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=1.5e-13 Score=122.14 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=155.5
Q ss_pred ceE-EeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+. +.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-------------~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-------------KVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-------------SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-------------cEEE
Confidence 444 45567899999999999999999865444445789999999999999999999999877 3445
Q ss_pred EEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecC-------CCceEEEEEcCCCCcEEEEEecCCcE
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWG-------TDTVISVRFNPAEPNVLATTASDRSI 228 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i 228 (434)
..........++++++|+++++++ +.+.++|..+.+++..+... ...+..+..+|..+.++++.-..+.|
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 555566778899999999998876 67999999998887766532 23455555555553333333334555
Q ss_pred EEEEccCCCcceEE--------------------EeeecCceeEEEeeCCCC----------------------------
Q 013873 229 TLYDLRMSSPARKV--------------------IMRANEDCNCYSYDSRKL---------------------------- 260 (434)
Q Consensus 229 ~iwd~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~---------------------------- 260 (434)
.+.|.....+.... .........+..+|....
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 55554433221110 000011111111111110
Q ss_pred --------------------------ccceeeeeCcccCeEEEEEccCCCEEEEE----eCCCcEEEEeCCCCeeeeEEe
Q 013873 261 --------------------------DEAKCVHMGHESAVMDIDYSPTGREFVTG----SYDRTIRIFQYNGGRSREIYH 310 (434)
Q Consensus 261 --------------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~ 310 (434)
.+.........++ ..+..+|+++++.+. ...+.|.++|.++.+....+.
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 1112222223334 667889999999988 445889999999987766664
Q ss_pred ccCCccEEEEEEcCCCCEEEEeeC--CCcEEEeecCcccccccCC
Q 013873 311 TKRMQRVFCVKFSCDASYVISGSD--DTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 311 ~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~vw~~~~~~~~~~~~ 353 (434)
......+..+.|++||+.+..+.. +|.|.|||..+.+.+..+.
T Consensus 312 ~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 312 PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 443245899999999997766554 4469999999999887664
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.2e-13 Score=112.36 Aligned_cols=176 Identities=16% Similarity=0.263 Sum_probs=132.7
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC-CCCCCCCCCCCCCCceeEEEecCceE
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA-TLTDSDDSTDNSSEPLAVYVWKNSFW 167 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (434)
+.|.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|.+|..... +... +........+..
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~----------~~et~~NPkGlC 140 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH----------VIETRSNPKGLC 140 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee----------eeecccCCCceE
Confidence 469999976777777776 6789999999876 455544 579999998743 2211 111112123455
Q ss_pred EEeeccCCCEEEEeC---CeEEEEeCCCCcc--eeeeecCCCceEEEEEcCCCCcEEEEEecCCc-EEEEEccCCCcceE
Q 013873 168 AVDHQWEGDLFATAG---AQVDIWNHNRSQP--INSFQWGTDTVISVRFNPAEPNVLATTASDRS-ITLYDLRMSSPARK 241 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~---~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 241 (434)
++....+..+++.-+ |.|.|-|+...+. ...+..|.+.|.|++.+-+| .++||++..|+ |+|||..++..+..
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 555555556666655 6799999877665 47788999999999999998 89999999997 89999999887766
Q ss_pred EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
+.- ......|.+++|||++.+|+++|..|+|.||.++.
T Consensus 220 ~RR-----------------------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRR-----------------------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eec-----------------------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 521 12345799999999999999999999999998865
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=9.5e-17 Score=145.84 Aligned_cols=228 Identities=18% Similarity=0.320 Sum_probs=170.6
Q ss_pred HHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE
Q 013873 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 126 (434)
..|+|++-+..++....||++.|+.++.+..+ .++++++.|..|++|.+.++.++..+.+|++.|++|+|+|-. +
T Consensus 213 lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s 287 (1113)
T KOG0644|consen 213 LVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S 287 (1113)
T ss_pred eeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c
Confidence 35688887888999999999999999999987 889999999999999999999999999999999999999964 6
Q ss_pred eeCCCcEEEeeCCCCCCCCCCCCCCCCC-CceeEEE-----------------ecCceEEEeeccCCCEEEEeC------
Q 013873 127 CGTDCTVKLWNVPVATLTDSDDSTDNSS-EPLAVYV-----------------WKNSFWAVDHQWEGDLFATAG------ 182 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~------ 182 (434)
.+.||++++||.+-.............. ....... ..-.+..+++......+++..
T Consensus 288 ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 288 SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI 367 (1113)
T ss_pred CCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence 7889999999987111111100000000 0000000 000112223333333444433
Q ss_pred -----C--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 183 -----A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 183 -----~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
. .+.+|++-++.....+.+|...+..+.++|-++.+..+++.||...|||+-.+.+.+.+.
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~------------ 435 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF------------ 435 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee------------
Confidence 1 267899999999999999999999999999998999999999999999999888776552
Q ss_pred eCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 256 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
.+| +.+...+||++|..++....-|.++|.....++
T Consensus 436 ------------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 ------------IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ------------ccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 243 456667899999999999888999998765444
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=7.3e-14 Score=128.01 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=138.8
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.++... ........
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------~l~~~~~~ 244 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------QVASFPRH 244 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------EccCCCCC
Confidence 3699999875544 344556778999999999998886542 457899998766321 11112223
Q ss_pred eEEEeeccCCCEEEEe---CC--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEE--ccCCCc
Q 013873 166 FWAVDHQWEGDLFATA---GA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD--LRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~---~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~ 238 (434)
.....|+|||..++.. ++ +|.+||+.+++... +..+...+....|+|++..++++...+|...+|. +..+..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 3457899999977753 23 59999998876543 3333456788999999954544444455555554 433221
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~ 315 (434)
..+ ..+........|+|||++|+..+.+ ..|.+||+.++...... .. .
T Consensus 324 -~~l-------------------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~--~ 374 (429)
T PRK03629 324 -QRI-------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DT--F 374 (429)
T ss_pred -EEe-------------------------ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CC--C
Confidence 111 1222345568899999998876644 35889999888654332 22 2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCc---EEEeecC
Q 013873 316 RVFCVKFSCDASYVISGSDDTN---LRLWKAK 344 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg~---v~vw~~~ 344 (434)
......|+|||++|+.++.++. +.++++.
T Consensus 375 ~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 375 LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 2346789999999999887765 6667764
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.5e-14 Score=129.17 Aligned_cols=215 Identities=11% Similarity=0.073 Sum_probs=142.5
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
..|.+||... .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. .........
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-------------~~l~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-------------ELVGNFPGM 247 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-------------EEeecCCCc
Confidence 4789999754 444566678889999999999998887753 46899999976632 122223445
Q ss_pred eEEEeeccCCCEEEE-eC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC--cEEEEEccCCCc
Q 013873 166 FWAVDHQWEGDLFAT-AG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 238 (434)
+....|+|+|..++. .+ .+|.+||+.++.. ..+..+........|+|++..++++...+| .|.+||+.....
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 567889999987653 22 3488889987764 344445556678999999954444443444 466666554322
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~ 315 (434)
..+ ..+...+....|+|||++|+..+.+ ..|.+||+.++... .+... .
T Consensus 327 -~~l-------------------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~--~ 377 (435)
T PRK05137 327 -RRI-------------------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSG--F 377 (435)
T ss_pred -EEe-------------------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCC--C
Confidence 111 1223445668899999999877643 36888998665432 22222 2
Q ss_pred cEEEEEEcCCCCEEEEeeCC------CcEEEeecCccc
Q 013873 316 RVFCVKFSCDASYVISGSDD------TNLRLWKAKASE 347 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~d------g~v~vw~~~~~~ 347 (434)
.+....|+|||++|+..+.+ ..+.++++..+.
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 46778999999998765542 257777776543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.8e-14 Score=131.42 Aligned_cols=213 Identities=11% Similarity=0.069 Sum_probs=138.3
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
.+|.+||.... ....+..+...+.+..|+|+|+.|+.++.+ ..|.+||+.++.. .........
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-------------~~l~~~~g~ 249 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-------------ELVASFRGI 249 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-------------EEeccCCCC
Confidence 46999998644 344566677889999999999999887643 4699999976632 111112233
Q ss_pred eEEEeeccCCCEEEEe---CC--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEccCCCc
Q 013873 166 FWAVDHQWEGDLFATA---GA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~---~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~ 238 (434)
.....|+|+|..++.. ++ +|++||+.+++.. .+..+.......+|+|++..++++...+|. |.++|+.++..
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3467899999866532 23 5999999887643 344444455678999999545545445555 44445443321
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeeeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~ 315 (434)
..+ ..+......++|+|||++|+..+.++ .|.+||+.++.... +... .
T Consensus 329 -~~l-------------------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~~--~ 379 (433)
T PRK04922 329 -ERL-------------------------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTPG--S 379 (433)
T ss_pred -EEe-------------------------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCCC--C
Confidence 111 01122344689999999988765443 59999998877553 2222 2
Q ss_pred cEEEEEEcCCCCEEEEeeCC---CcEEEeecCc
Q 013873 316 RVFCVKFSCDASYVISGSDD---TNLRLWKAKA 345 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~d---g~v~vw~~~~ 345 (434)
......|+|||++|+..+.+ +.|.++++..
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 34567999999988876653 3577777754
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=130.66 Aligned_cols=185 Identities=14% Similarity=0.257 Sum_probs=145.9
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
.-+....|.+.|.|-.|+|+| .-|++++.||.|++|. ++|-...++.....+|.|++|.|+++.++-|.. +.+.|=.
T Consensus 96 VE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKp 172 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEee
Confidence 345567899999999999999 8899999999999998 466555556667789999999998876666543 4565555
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
+... ..++....|.+-+.+++|++..+++++++.+ ..+||- .|..+..-..|..+|++++|+|+
T Consensus 173 L~~n------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 173 LAAN------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred cccc------------cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-
Confidence 5433 4677777888899999999999999999976 789996 46667777788999999999997
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
..++.++. .++++= ....+.|..++|||||..+++|+..|.+
T Consensus 239 -~~~~v~S~-nt~R~~------------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 239 -KDYLLWSY-NTARFS------------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred -cceeeeee-eeeeec------------------------------------CCCccceEEEEEcCCCceeeccccCceE
Confidence 45655553 233311 1356789999999999999999999987
Q ss_pred EE
Q 013873 296 RI 297 (434)
Q Consensus 296 ~i 297 (434)
.+
T Consensus 281 ~~ 282 (737)
T KOG1524|consen 281 IV 282 (737)
T ss_pred EE
Confidence 65
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.8e-14 Score=128.36 Aligned_cols=205 Identities=15% Similarity=0.130 Sum_probs=133.1
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++.. .........
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-------------~~l~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-------------RVVANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-------------EEeecCCCC
Confidence 467888864 44444555678889999999999998877643 3599999977632 112222334
Q ss_pred eEEEeeccCCCEEEE-eC--Ce--EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc-c
Q 013873 166 FWAVDHQWEGDLFAT-AG--AQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP-A 239 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~--~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~ 239 (434)
.....|+|+|..++. .+ +. |.++|...+. ...+..+........|+|+|..+++++..+|...+|.+..... .
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 557899999987764 32 33 6666665554 3444444555667899999965555554567777776643211 1
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeeeeEEeccCCcc
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
..+ . .+.......+|||||++|+..+.++ .|.+||+.++....... . ..
T Consensus 321 ~~l-----------------------t--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--~~ 372 (427)
T PRK02889 321 QRV-----------------------T--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--TR 372 (427)
T ss_pred EEE-----------------------e--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--CC
Confidence 111 0 1112234578999999998777654 59999998877543322 2 23
Q ss_pred EEEEEEcCCCCEEEEeeCCC
Q 013873 317 VFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg 336 (434)
.....|+|||++|+.++.++
T Consensus 373 ~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 373 DESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ccCceECCCCCEEEEEEecC
Confidence 46789999999988777544
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=118.05 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=162.6
Q ss_pred eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--
Q 013873 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (434)
Q Consensus 105 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (434)
+..-..+|+|.+|+++++.++.+.....|.||.......- ...-....+...++.++|.|..+.+++++
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w---------~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW---------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCc---------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 3334579999999999999999999999999998766421 12233445677889999999999999887
Q ss_pred CeEEEEeCCC-C--cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCC
Q 013873 183 AQVDIWNHNR-S--QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRK 259 (434)
Q Consensus 183 ~~i~i~d~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
..-++|.... + ++...+..++...+++.|+|.+ +.|++|+.-..|.+|-+.....
T Consensus 77 rnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENd--------------------- 134 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQEND--------------------- 134 (361)
T ss_pred CCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccc---------------------
Confidence 4589998833 2 4556666678899999999988 8999999999999987654321
Q ss_pred CccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-----C-------------CeeeeEEeccCCccEEEEE
Q 013873 260 LDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-----G-------------GRSREIYHTKRMQRVFCVK 321 (434)
Q Consensus 260 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~~v~~~~ 321 (434)
-...+.+...+...|++++|+|++-+|++|+.|+..+||..- . |.++..+. ...+.+..+.
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~ 213 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVL 213 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeE
Confidence 112222334678899999999999999999999999999642 1 11122221 2347899999
Q ss_pred EcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 322 FSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 322 ~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
|+|+|..|+-.+.|+.+.+=|.....
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999999999999887664
No 222
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.1e-14 Score=121.90 Aligned_cols=261 Identities=14% Similarity=0.211 Sum_probs=161.1
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC-----------CCcEEEee
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-----------DCTVKLWN 137 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----------dg~v~iwd 137 (434)
=+-+.|||.| .||+|--.-| |.+|--.+...++.|. |. .|.-+.|||+.+||+|-+. ...+.|||
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3568899999 9999988766 8899877777777775 54 5888999999999998643 25799999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
+.+|.+...+.....+ .....-+.||.|++++|.-.+ .|.||+..+..++..-...-..|....|+|.+
T Consensus 289 I~tG~lkrsF~~~~~~---------~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~- 358 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSP---------YLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTS- 358 (698)
T ss_pred ccccchhcceeccCCC---------ccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCc-
Confidence 9999876655443111 112235689999999998774 59999987755443333334567777788865
Q ss_pred cEEEEEec-----CCcEEEEEccCCCcceEEEee----------------------------------------------
Q 013873 217 NVLATTAS-----DRSITLYDLRMSSPARKVIMR---------------------------------------------- 245 (434)
Q Consensus 217 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~---------------------------------------------- 245 (434)
++||-=.. -..+.+..+.+...++...+.
T Consensus 359 ~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp 438 (698)
T KOG2314|consen 359 NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP 438 (698)
T ss_pred ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence 55543211 112333332222111111000
Q ss_pred ---------------------------ecCceeEEEeeCC-CCccceeeeeCcccCeEEEEEccCCCEEEEEe---CCCc
Q 013873 246 ---------------------------ANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRT 294 (434)
Q Consensus 246 ---------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~ 294 (434)
.....++..|... +......+..-.....+.+.|+|.|++++.++ ..|.
T Consensus 439 ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 439 VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccc
Confidence 1111122222221 11111111111123456789999999988764 5688
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC------CCcEEEeecC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAK 344 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~ 344 (434)
+.++|+.......+-...| ...+.+.|.|.|+|+++++. |..-++|++.
T Consensus 519 l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999998644444444444 56788999999999999886 3344555554
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=3e-16 Score=133.47 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=166.1
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDI 187 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i 187 (434)
.-.-..+.++.+|.+|+.|+..|.|..+|..+..+ ...+.....+.++.|-.+..+++.+.. -++|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------------~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yv 195 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------------HFEINVMETVRDVTFLHNEQFFAVAQKKYVYV 195 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee-------------eeeeehhhhhhhhhhhcchHHHHhhhhceEEE
Confidence 33456789999999999999999999999988754 233334456677778888888888875 4999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
||- .|..+..+..+ ..+..+.|.|.. .+|++++..|.++.-|+.++..+..+.
T Consensus 196 YD~-~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~------------------------ 248 (545)
T KOG1272|consen 196 YDN-NGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR------------------------ 248 (545)
T ss_pred ecC-CCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHH------------------------
Confidence 985 45556666653 568899999987 899999999999999999887765542
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
...+.+..++-+|-+..+-+|...|+|.+|...+..++..+..|. ++|.++++.++|+|++|.+.|..++|||++...
T Consensus 249 -t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~-g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 249 -TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred -ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC-CCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 345677888899988899999999999999999888877776655 899999999999999999999999999999887
Q ss_pred ccccCC
Q 013873 348 QLGVLH 353 (434)
Q Consensus 348 ~~~~~~ 353 (434)
.+.++.
T Consensus 327 ql~t~~ 332 (545)
T KOG1272|consen 327 QLHTYR 332 (545)
T ss_pred ccceee
Confidence 766553
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.6e-14 Score=125.65 Aligned_cols=189 Identities=17% Similarity=0.255 Sum_probs=127.7
Q ss_pred HHHhhhhccccccccc-cCCCCCeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCC----------ceeEEeeccCCCeeE
Q 013873 47 AAKLEKIFARPFIGAL-DGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANR----------RTVCQYSGHQGAVRG 114 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~ 114 (434)
..-+|+.+...++..+ .||...|.|+.|-|. +..++++|..|..|+++|+... .....+..|...|..
T Consensus 73 r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKr 152 (758)
T KOG1310|consen 73 RLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKR 152 (758)
T ss_pred eEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhh
Confidence 3457888888887777 799999999999995 3378899999999999999842 334556789999999
Q ss_pred EEEcCCC-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCE-EEEeCCe--EEEEeC
Q 013873 115 LTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL-FATAGAQ--VDIWNH 190 (434)
Q Consensus 115 i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--i~i~d~ 190 (434)
|+-.|++ ..+.+++.||+++-+|++....-...... ..........--...++..+|.... |+.|+.+ .++||.
T Consensus 153 ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~--~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 153 IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC--PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eecCCCCCceEEEecCCcceeeecccCCccCCccccc--cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999988 78899999999999999764332211100 0111112222245678888987655 4455443 889994
Q ss_pred CCC--------c----------ceeeeec-CC-----------CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 191 NRS--------Q----------PINSFQW-GT-----------DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 191 ~~~--------~----------~~~~~~~-~~-----------~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
+.. . ++..+.. |- ..++-+.|+|+|..+|++-+ .-.|+++|+...+.
T Consensus 231 Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKS 307 (758)
T ss_pred hhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCC
Confidence 321 0 1222211 11 12566789999966666544 44799999876543
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.9e-14 Score=117.70 Aligned_cols=227 Identities=16% Similarity=0.215 Sum_probs=162.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc----eeEEeeccCCCeeEEEEcCCCC-eEEEeeCC--CcEEEee
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGAVRGLTVSTDGR-ILVSCGTD--CTVKLWN 137 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d--g~v~iwd 137 (434)
.+..|..+.... ..|++|-.+|.+.+|....+. .+..+..+ ..+..+.-++... .+++||.. ..+.+||
T Consensus 104 ~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555443 468888999999999988443 23334433 4566677776444 55568888 8899999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCC-cceeeeecCCCceEEEEEc
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~ 212 (434)
++....+.......+..-.+.... .+.++.|-+. ...|+++. +.+++||.+.+ +++..+......++++...
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPv---W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPV---WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred cccceeeeeccCCCCccccceeee---eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 987754443333222222222222 2344555555 66777776 67999999875 6788888888999999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
|++ +++++|..-|.+..||++....... .+.+-.+.|.++..+|.+.++++||-|
T Consensus 257 p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~------------------------~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 257 PSG-NFIYTGNTKGQLAKFDLRGGKLLGC------------------------GLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred CCC-cEEEEecccchhheecccCceeecc------------------------ccCCccCCcceEEEcCCCceEEeeccc
Confidence 988 8899999999999999998765433 235778899999999999999999999
Q ss_pred CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC
Q 013873 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
..|+|+|+.+.+++...... +.++++.+.++
T Consensus 312 RyvRIhD~ktrkll~kvYvK--s~lt~il~~~~ 342 (412)
T KOG3881|consen 312 RYVRIHDIKTRKLLHKVYVK--SRLTFILLRDD 342 (412)
T ss_pred eeEEEeecccchhhhhhhhh--ccccEEEecCC
Confidence 99999999997665544333 55777777554
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.2e-14 Score=119.33 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=135.2
Q ss_pred EEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEe
Q 013873 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 244 (434)
..++++.+|..+++++ |.+++|++.+...+.....|...|.++.|+|++ .+|++.+.| ..++|+.+++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789999999999996 779999998888888888899999999999999 789999989 999999998855443310
Q ss_pred eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC---C--EEEEEeCCCcEEEEeCCCCee----eeEEeccCCc
Q 013873 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---R--EFVTGSYDRTIRIFQYNGGRS----REIYHTKRMQ 315 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---~--~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~ 315 (434)
.........+.|+-|+ . .++.-..-+.|+.||+..... ..........
T Consensus 226 -----------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 226 -----------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred -----------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 0122234456666655 2 233333345566666543222 1111112225
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHH
Q 013873 316 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIY 390 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 390 (434)
.|++++.++||++++.|+.||.|.|++..+.+.++.... .|..-|+.+.|.|.......
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~----------------aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE----------------AHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh----------------hheeeeeeEEEcCCcCcccc
Confidence 799999999999999999999999999999888766543 78888999999997766544
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=115.51 Aligned_cols=250 Identities=12% Similarity=0.162 Sum_probs=170.9
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec--cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
..|...|.|++|.-.+ ..|++|..+|+|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+.
T Consensus 102 ~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 102 HPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CccccceEEEEEccCC-eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 4567999999999887 8999999999999999999988877652 235999999999989999999999999999976
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCE-EEEeC--CeEEEEeCCCCc-ceeeee------cCCCceEEEE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL-FATAG--AQVDIWNHNRSQ-PINSFQ------WGTDTVISVR 210 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~i~d~~~~~-~~~~~~------~~~~~i~~i~ 210 (434)
... ...+.........+..+.|+|.... +++.+ +.+.+||.+... ++.... .....-.++.
T Consensus 181 ~~~---------~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 181 RQN---------PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred CCC---------CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 532 1234444444567788889987654 44444 459999987653 222211 1122335788
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
|+|+| +.|++--....-.+||+-...+. ++.+|-+..+- .....+.+++|-.| ..+++|+
T Consensus 252 ~~~~G-~Q~msiRR~~~P~~~D~~S~R~~------------V~k~D~N~~GY------~N~~T~KS~~F~~D-~~v~tGS 311 (609)
T KOG4227|consen 252 WSPSG-NQFMSIRRGKCPLYFDFISQRCF------------VLKSDHNPNGY------CNIKTIKSMTFIDD-YTVATGS 311 (609)
T ss_pred eCCCC-CeehhhhccCCCEEeeeecccce------------eEeccCCCCcc------eeeeeeeeeeeecc-eeeeccC
Confidence 99999 45555444444556776543221 11111100000 01234667777654 3499999
Q ss_pred CCCcEEEEeCCCCe-----------------------eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 291 YDRTIRIFQYNGGR-----------------------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 291 ~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.+-.|++|.+.... .+.. ..+|.+-+..+.|+|...+|++.+-...+++|.-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V-LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV-LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEE-EecccccccceeecCCcceEeccchhhheecccc
Confidence 99999999875210 1112 2344477889999999999999999999999964
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.1e-13 Score=123.88 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=137.8
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeee---CCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCC--cEEE
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGS---MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDC--TVKL 135 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg--~v~i 135 (434)
+..+...+.+.+|+||| +.|+..+ .+..|++||+.+++... +....+.+..+.|+|||+.|+.. +.+| .|.+
T Consensus 194 lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 34455678899999999 6666543 23579999998876433 22233445578999999988765 4455 4888
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
||+.++... ........+....|+|+|..++... + .|.++|+.++... .+...........
T Consensus 272 ~d~~tg~~~-------------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~ 337 (429)
T PRK03629 272 MDLASGQIR-------------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDAD 337 (429)
T ss_pred EECCCCCEE-------------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEE
Confidence 898766432 1112233456789999999775543 2 3666677766443 3333344456789
Q ss_pred EcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 211 FNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
|+|+|..+++++..++ .|.+||+.++... .+ .. ........|+|||++|+.
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L-------------------------t~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-------------------------TD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ee-------------------------CC-CCCCCCceECCCCCEEEE
Confidence 9999954444444433 4777887655321 11 00 112235789999999999
Q ss_pred EeCCCc---EEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 289 GSYDRT---IRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 289 ~~~d~~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
++.++. +.++++.... ...+.. +.+.+...+|+|
T Consensus 391 ~s~~~~~~~l~~~~~~G~~-~~~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRF-KARLPA-TDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEECCCCC-eEECcc-CCCCcCCcccCC
Confidence 887764 6777875443 333433 336688888987
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=116.70 Aligned_cols=277 Identities=10% Similarity=0.155 Sum_probs=174.0
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 129 (434)
.|++...+..-.++...+++.+++|+|||..+|.+...|-.|.+|.+.+.+... ++.....+..++|+|+|++.+.++.
T Consensus 75 vwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 75 VWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred EEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec
Confidence 444444445556677788999999999997777888889999999998866543 3334456788999999998887765
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe----EEEEeCCCCcceeeeecCCCc
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ----VDIWNHNRSQPINSFQWGTDT 205 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~i~d~~~~~~~~~~~~~~~~ 205 (434)
-......++...+.- .-........-....+.|+|||..++.-+.- |..|.. .-.
T Consensus 154 rDCkdyv~i~~c~~W---------~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG 212 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAW---------ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLG 212 (447)
T ss_pred ccHHHHHHHHhhHHH---------HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee------------ccc
Confidence 311111111000000 0000000012234578899999998877642 333322 235
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee----------------------------ecCceeE-----
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR----------------------------ANEDCNC----- 252 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------------~~~~~~~----- 252 (434)
+..++|+|.+ ++|++|+.|+.+++.+--+.++...+... ...+-..
T Consensus 213 ~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 213 LKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred eeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 7889999988 89999999999998764433332222111 0000000
Q ss_pred --EEeeCCCCccceee------eeCcccCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeeeeEEeccCCccEEEEEE
Q 013873 253 --YSYDSRKLDEAKCV------HMGHESAVMDIDYSPTGREFVTGSY--DRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 253 --~~~~~~~~~~~~~~------~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
..|........... +......+--++||+|..+++|-.. -+.+-+||++..+....+... .+|....|
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk--~piraf~W 369 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK--HPIRAFEW 369 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc--cceeEEEe
Confidence 01111111111111 1122345777999999999988764 356999999988876666555 58999999
Q ss_pred cCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 323 SCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 323 s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
+|....|+.+.....+++|.......++.
T Consensus 370 dP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 99888888777777899998876555543
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3e-13 Score=124.55 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=138.5
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCC---CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCC--cE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDC--TV 133 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg--~v 133 (434)
+.+..|...+.+.+|+|+| +.|+..+.+ ..|++||+.+++... +..+.+...+..|+|+|+.|+ +.+.+| .|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred eEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 4455677789999999999 777766533 469999998876533 333445556789999999775 445555 58
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
.+||+.++... ............+|+|+|..++... + .++++|+.+++... +..+......
T Consensus 275 y~~d~~~g~~~-------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~ 340 (433)
T PRK04922 275 YVMDLGSRQLT-------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR 340 (433)
T ss_pred EEEECCCCCeE-------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 99998766431 1111122334678999998776543 2 37777877765432 2222334457
Q ss_pred EEEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 209 VRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
.+|+|+|..++++...++ .|.+||+.++... .+ .+........|+|||++|
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--------------------------t~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--------------------------TPGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC--------------------------CCCCCCCCceECCCCCEE
Confidence 899999954444433333 5888988655422 11 111223456899999988
Q ss_pred EEEeCC---CcEEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 287 VTGSYD---RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 287 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
+..+.+ +.|.++++..+. ...+..+ .+.+...+|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~-~~~l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRV-RQRLVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCc-eEEcccC-CCCCCCCccCC
Confidence 776653 458888886543 3333222 24566778876
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=1.9e-13 Score=129.80 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=165.0
Q ss_pred EeCCCCceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCceEEEee
Q 013873 94 WDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDH 171 (434)
Q Consensus 94 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (434)
|+. .|..+..+..|...|..++.++.. .+|++|+.||+|++|+...-.... ........+. ..+.+..+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------ceeeeeEEEeccCCceEEEEe
Confidence 765 467788888899999999998754 899999999999999986542210 1112222333 5678888888
Q ss_pred ccCCCEEEEeC--CeEEEEeCCCC--cce-----eeeecC-CCce-EEEEEcCCCCc-EEEEEecCCcEEEEEccCCCcc
Q 013873 172 QWEGDLFATAG--AQVDIWNHNRS--QPI-----NSFQWG-TDTV-ISVRFNPAEPN-VLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 172 ~~~~~~~~~~~--~~i~i~d~~~~--~~~-----~~~~~~-~~~i-~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
.+.+..+|.++ |.|.+.+++.. ... .....+ .+.+ ..-++...... .++.+..-+.|..||++.....
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 88888888775 66888887652 111 111111 2223 33344443334 7888888899999999887655
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
..+. .....+.|++++.+|.++++++|+..|.+.+||++-+.++..+..++..++..
T Consensus 1187 w~lk-----------------------~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1187 WRLK-----------------------NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRH 1243 (1431)
T ss_pred Hhhh-----------------------cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcce
Confidence 4431 12356789999999999999999999999999999988888876666678888
Q ss_pred EEEcCC---CCEEEEee--CCCcEEEeecCcccccccCChh
Q 013873 320 VKFSCD---ASYVISGS--DDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 320 ~~~s~~---~~~l~s~~--~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
+..+|- ....++++ ..+.|.+|++.+|..-.++...
T Consensus 1244 v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1244 VWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred EEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 887773 24555544 4788999999999776666433
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.9e-13 Score=121.65 Aligned_cols=219 Identities=16% Similarity=0.092 Sum_probs=140.3
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeC---CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCc--E
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCT--V 133 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~--v 133 (434)
+.+..|...+.+.+|+||| +.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|+|+.|+ +.+.+|. |
T Consensus 195 ~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred EEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 4466778899999999999 67766543 468999999887653 4555667788899999998775 5555655 6
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
.+||+.++... .............|+|+|..++... + .|+++|+..+... .+..+...+..
T Consensus 273 y~~d~~~~~~~-------------~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~ 338 (435)
T PRK05137 273 YTMDLRSGTTT-------------RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST 338 (435)
T ss_pred EEEECCCCceE-------------EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence 66787665321 1111222345678999998776543 2 4888898766543 33333455677
Q ss_pred EEEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 209 VRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
..|+|+|..++++....+ .|.+||+..... ..+ .....+..+.|+|||+.|
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l--------------------------t~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL--------------------------TSGFLVEGPTWAPNGRVI 391 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eec--------------------------cCCCCCCCCeECCCCCEE
Confidence 899999954444433333 566677643321 111 111235678999999988
Q ss_pred EEEeCC------CcEEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 287 VTGSYD------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 287 ~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
+..+.+ ..+.++|+..+... .+.. ...+...+|+|
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDLTGRNER-EVPT--PGDASDPAWSP 432 (435)
T ss_pred EEEEccCCCCCcceEEEEECCCCceE-EccC--CCCccCcccCC
Confidence 765543 35888888766543 3322 23466777876
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.9e-13 Score=108.51 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=105.1
Q ss_pred EEEEcCCCCeEEEeeC----------CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-
Q 013873 114 GLTVSTDGRILVSCGT----------DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (434)
.+.|+++|++|+.-.. -|...+|.++.... ............|.+++|+|+|..++...
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~----------~~~~i~l~~~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI----------PVESIELKKEGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC----------ccceeeccCCCceEEEEECcCCCEEEEEEc
Confidence 5789999987765433 24456666643321 11222222345699999999999876553
Q ss_pred ---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec---CCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 183 ---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS---DRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 183 ---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
..+.+||++ ++.+..+. ...+..+.|+|+| ++|++++. .|.|.+||.+....+...
T Consensus 80 ~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-------------- 141 (194)
T PF08662_consen 80 SMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF-------------- 141 (194)
T ss_pred cCCcccEEEcCc-ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--------------
Confidence 359999996 66666554 5677899999999 66666653 467999999865554332
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeeee
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY------DRTIRIFQYNGGRSRE 307 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~ 307 (434)
.| ..++.++|+|||++|++++. |+.++||++. |+.+.
T Consensus 142 ------------~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 142 ------------EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred ------------cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 23 35789999999999999874 7889999986 44433
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4.7e-13 Score=122.89 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=134.3
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCC---CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKL 135 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~i 135 (434)
+.+..+...+.+.+|+||| +.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred eEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 3445677889999999999 777765532 359999999887543 333445667899999999886 5677888777
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---Ce--EEEEeCCCCcceeeeecCCCceEEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQ--VDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
|.++.... ................|+|||..++..+ +. |.+++...+... .+...........
T Consensus 267 y~~d~~~~-----------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~ 334 (427)
T PRK02889 267 YTVNADGS-----------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPR 334 (427)
T ss_pred EEEECCCC-----------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceE
Confidence 76542210 1111111122334567999999776533 33 555555554432 2222223345678
Q ss_pred EcCCCCcEEEEEecCC---cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 211 FNPAEPNVLATTASDR---SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
|+|+| ..++..+.++ .|.+||+.++... .+ . .........|+|||+.|+
T Consensus 335 ~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-~l-------------------------t-~~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 335 ISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-AL-------------------------T-DTTRDESPSFAPNGRYIL 386 (427)
T ss_pred ECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-Ec-------------------------c-CCCCccCceECCCCCEEE
Confidence 99999 4555544443 5888888765421 11 0 112235679999999988
Q ss_pred EEeCCC---cEEEEeCCCCeeeeEEeccCCccEEEEEEcCC
Q 013873 288 TGSYDR---TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 288 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
.++.++ .+.+.++. +.....+.. ..+.+...+|+|-
T Consensus 387 ~~~~~~g~~~l~~~~~~-g~~~~~l~~-~~g~~~~p~wsp~ 425 (427)
T PRK02889 387 YATQQGGRSVLAAVSSD-GRIKQRLSV-QGGDVREPSWGPF 425 (427)
T ss_pred EEEecCCCEEEEEEECC-CCceEEeec-CCCCCCCCccCCC
Confidence 877544 35566664 443333332 2255677788773
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=5e-14 Score=111.59 Aligned_cols=161 Identities=18% Similarity=0.338 Sum_probs=127.2
Q ss_pred CCCCCeEEEEeCCCC--CceEEeeeCCCcEEEEeCCCCcee----------EEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 64 GHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIANRRTV----------CQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~----------~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
+..+.+.|..+.-+. .-+|++|..+|.|.+||+.++..+ .....|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 456788888754332 245678889999999999987433 33456999999999988666667888888
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
.+..|+++...... .........+..+..+..-||++++++++ +.|++|..++..++..+..|...|.++
T Consensus 228 kl~~~Sl~~s~gsl--------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSL--------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred cceeeeeccccCcc--------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 99999986442111 12222333455778889999999999998 779999999999999999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEc
Q 013873 210 RFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
+|+|+. .++++++.|++|.+|++
T Consensus 300 Afspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCC-chhhhccCCceEEeeec
Confidence 999986 79999999999999986
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=6.6e-11 Score=105.58 Aligned_cols=257 Identities=15% Similarity=0.193 Sum_probs=161.9
Q ss_pred CCCeEEEEeCCCCCceEEeeeC----CCcEEEEeCCCC--c--eeEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEe
Q 013873 66 RDGISCMAKNPNYLKGFFSGSM----DGDIRLWDIANR--R--TVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLW 136 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~----dg~i~iwd~~~~--~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iw 136 (434)
......++++|++ .+|++... +|.|..|++... + .+............++++|++++|+++.. +|.|.++
T Consensus 36 ~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3456678899998 77877765 578999988764 2 23333333455667999999999998864 8999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEE-----------ecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcc-e---ee
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYV-----------WKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP-I---NS 198 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~-~---~~ 198 (434)
++...... ........ ......++.++|+++++++.+ ..|.+|++..... + ..
T Consensus 115 ~l~~~g~l---------~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 115 PLDDDGSL---------GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp EECTTSEE---------EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred EccCCccc---------ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 99764211 01111111 123456889999999888765 4599999876551 2 22
Q ss_pred ee-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 199 FQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 199 ~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
+. ........+.|+|++..++++.-.++.|.+|++....-......... . ... . .........|
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~---------~--~~~---~-~~~~~~~~~i 250 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS---------T--LPE---G-FTGENAPAEI 250 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE---------S--CET---T-SCSSSSEEEE
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee---------e--ccc---c-ccccCCceeE
Confidence 22 22345789999999977777777889999999883222111100000 0 000 0 0112367889
Q ss_pred EEccCCCEEEEEe-CCCcEEEEeCC--CCeeee--EEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecC--cccc
Q 013873 278 DYSPTGREFVTGS-YDRTIRIFQYN--GGRSRE--IYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAK--ASEQ 348 (434)
Q Consensus 278 ~~sp~~~~l~~~~-~d~~i~iwd~~--~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~--~~~~ 348 (434)
+++|||++|+++. .++.|.+|+++ ++.+.. .+... ......++++|+|++|++++ .++.|.+|+++ +|.+
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 9999999987766 46789999994 344322 22222 24478999999999999887 56789999874 5543
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=9e-12 Score=115.16 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=136.8
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
..|.++|..... ...+..+...+....|+|+|++|+.+..+ ..|.+||+.++.. .........
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-------------~~~~~~~~~ 235 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-------------EKVASFPGM 235 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-------------EEeecCCCC
Confidence 358888875443 44555577789999999999999887654 4799999976632 112222344
Q ss_pred eEEEeeccCCCEEEEe-C----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC--cEEEEEccCCCc
Q 013873 166 FWAVDHQWEGDLFATA-G----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 238 (434)
..++.|+|++..++.. + ..|++||+.++... .+..+........|+|++..++++...++ .|.++|+.+...
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 5568899999866542 2 24999999876543 33334444557789999855555544444 456666554321
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeeeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~ 315 (434)
. .+ ..+...+..+.|+|+|++|+.++.++ .|.+||+.++........ .
T Consensus 315 ~-~l-------------------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~ 365 (417)
T TIGR02800 315 R-RL-------------------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT---G 365 (417)
T ss_pred E-Ee-------------------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC---C
Confidence 1 11 12334566789999999999888776 799999987654332221 2
Q ss_pred cEEEEEEcCCCCEEEEeeCCC---cEEEeec
Q 013873 316 RVFCVKFSCDASYVISGSDDT---NLRLWKA 343 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg---~v~vw~~ 343 (434)
......|+|||++|+..+.++ .+.+.+.
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 234568999999888877654 3444443
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.4e-11 Score=112.41 Aligned_cols=211 Identities=10% Similarity=0.032 Sum_probs=133.8
Q ss_pred cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCce
Q 013873 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (434)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (434)
.|.++|.+.+.. ..+..+...+....|+|+|+.|+..+.+ ..|.+|++.++.... ........
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------l~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------ITNFEGLN 245 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-------------ccCCCCCc
Confidence 478888765543 4455577889999999999998876543 368889997764211 11112233
Q ss_pred EEEeeccCCCEEEE-e--CC--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEccCCCcc
Q 013873 167 WAVDHQWEGDLFAT-A--GA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPA 239 (434)
Q Consensus 167 ~~~~~~~~~~~~~~-~--~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~ 239 (434)
....|+|+|..++. . ++ +|.+||+.+++.. .+..+........|+|++..++++...+|. |.++|+.++...
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 45789999987763 2 23 5899999887643 344444556678999999666665555554 555565544321
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCeeeeEEeccCCcc
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-R--TIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
.+. ..........|+|+|++|+..+.+ + .|.+||+.++......... .
T Consensus 325 -~lt-------------------------~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~---~ 375 (430)
T PRK00178 325 -RVT-------------------------FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS---L 375 (430)
T ss_pred -Eee-------------------------cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC---C
Confidence 110 001122346899999998877653 3 4888999887654332221 2
Q ss_pred EEEEEEcCCCCEEEEeeCC-C--cEEEeecC
Q 013873 317 VFCVKFSCDASYVISGSDD-T--NLRLWKAK 344 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~d-g--~v~vw~~~ 344 (434)
.....|+|||++|+..+.+ | .|.++++.
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2356899999998876643 3 46666664
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.4e-11 Score=107.99 Aligned_cols=260 Identities=13% Similarity=0.211 Sum_probs=153.0
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-----eC-----CCcEEE
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-----GT-----DCTVKL 135 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-----~~-----dg~v~i 135 (434)
...++..+++++| .++|.+ .+..++|++..++..+.+... ..+.++.|+|.|.+|.+- .. .-.+.+
T Consensus 34 ~~~~~v~~~S~~G-~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSNNG-RLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcCCC-cEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 3447788899987 655555 467899999988865444332 278999999999988753 11 234679
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
|++.++.....+. .....-++..|+.|..+.+-- ++++.+|++...+.+. -..|...|+.+.++|.
T Consensus 110 ~~vet~~~~s~~q------------~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpg 176 (566)
T KOG2315|consen 110 YNVETGVQRSQIQ------------KKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPG 176 (566)
T ss_pred eeeccceehhhee------------hhhhcCcccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCC
Confidence 9987743221111 111112577788887766543 4679999988744332 2234677888999987
Q ss_pred CCc-EEEE-----EecCCcEEEEEccCCCcceE-----------------------EEee----------ecCceeEEEe
Q 013873 215 EPN-VLAT-----TASDRSITLYDLRMSSPARK-----------------------VIMR----------ANEDCNCYSY 255 (434)
Q Consensus 215 ~~~-~l~~-----~~~dg~i~iwd~~~~~~~~~-----------------------~~~~----------~~~~~~~~~~ 255 (434)
... .+++ ++.-+.++||.......... +.+. -.....++.+
T Consensus 177 p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 177 PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL 256 (566)
T ss_pred CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence 333 3332 34456788887652211000 0000 0011122222
Q ss_pred eCCCCc---------------------------------------cceeeeeCcccCeEEEEEccCCCEEEEEeC---CC
Q 013873 256 DSRKLD---------------------------------------EAKCVHMGHESAVMDIDYSPTGREFVTGSY---DR 293 (434)
Q Consensus 256 ~~~~~~---------------------------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~ 293 (434)
+..... ....++.-.+++-+++-|+|.|++++.+|- -|
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCC
Confidence 222000 000111122334444555666666666554 35
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC------CCcEEEeecCc
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAKA 345 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~ 345 (434)
.|-|||+.+.+++..+... .-+-+.|+|||.+|+|++. |+.++||++..
T Consensus 337 ~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 6888888876666555443 3456899999999998874 78899999854
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=1.3e-10 Score=100.95 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=162.7
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEe-ee---------CCCcEEEEeCCCCceeEEeeccC-------CCe
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFS-GS---------MDGDIRLWDIANRRTVCQYSGHQ-------GAV 112 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~s-g~---------~dg~i~iwd~~~~~~~~~~~~h~-------~~v 112 (434)
+.+..+.+.+.++..-..+-- + ++||+ +.|+. .+ .+..|.+||..+.+.+..+..-. ..-
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~-~-~spDg-~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNP-V-VASDG-SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEECCCCEEEEEEEccCCCce-e-ECCCC-CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCcc
Confidence 334445555555543222222 4 99998 55554 44 57899999999999998876322 123
Q ss_pred eEEEEcCCCCeEEEee-C-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC
Q 013873 113 RGLTVSTDGRILVSCG-T-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (434)
Q Consensus 113 ~~i~~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (434)
..++++|+|++|++.. . +..|.+.|+.+++.+..... .........+.+..++.+.++......+
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------------PDCYHIFPTANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------------CCCcEEEEecCCccEEEeecCceEEEEe
Confidence 3688999999998766 3 68999999998865433222 2223333344455555555554333222
Q ss_pred CC-Ccc-eee---eecCCCceE-EEEEcC-CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc
Q 013873 191 NR-SQP-INS---FQWGTDTVI-SVRFNP-AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA 263 (434)
Q Consensus 191 ~~-~~~-~~~---~~~~~~~i~-~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
.. ++. ... +......+. .-.|.+ ++ ..+.+... |.|.+.|+........... ..-.....
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~-----------~~~~~~~~ 241 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAI-----------EAFTEAEK 241 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceeccee-----------eecccccc
Confidence 21 111 111 111000000 003455 55 55555454 9999999755432221100 00000000
Q ss_pred eeeeeCcccCeEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEe
Q 013873 264 KCVHMGHESAVMDIDYSPTGREFVTGS----------YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISG 332 (434)
Q Consensus 264 ~~~~~~~~~~i~~~~~sp~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 332 (434)
.. .-..+.+.-++++|+++.+++.. ..+.|.++|..+++.+..+..+ ..+..++++||++ +|++.
T Consensus 242 ~~--~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 242 AD--GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred cc--ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEe
Confidence 00 01233444599999999888743 2257999999999988888765 5789999999999 77766
Q ss_pred e-CCCcEEEeecCcccccccC
Q 013873 333 S-DDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 333 ~-~dg~v~vw~~~~~~~~~~~ 352 (434)
+ .++.|.++|..+++.+..+
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 6 5788999999999988776
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=2.2e-11 Score=108.37 Aligned_cols=252 Identities=13% Similarity=0.167 Sum_probs=150.5
Q ss_pred hhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee-CC
Q 013873 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TD 130 (434)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d 130 (434)
+..+...+..+....+.-..+.|+||| +++++++.||.|.++|+.+++.+.++.. .....+++++++|++++++. .+
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEET
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCC
Confidence 344556667776554444557899999 8888889999999999999999999875 44567899999999998765 58
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-C--CeEEEEeCCCCccee-eeecCCCce
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-G--AQVDIWNHNRSQPIN-SFQWGTDTV 206 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i~i~d~~~~~~~~-~~~~~~~~i 206 (434)
+.+.++|..+.+.+............ ....+.++..++....++.. . +.|.+.|....+.+. .........
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred CceeEeccccccceeecccccccccc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 99999999877543221110000000 12355667777777744443 3 568888877665442 222234567
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee-----------------------------------------
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR----------------------------------------- 245 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------------------------- 245 (434)
....|+|++..++++...+..|.++|..+......+-..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 789999998555565666778888887655322211000
Q ss_pred -----------------------------------ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 246 -----------------------------------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 246 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
......+.++|.........+..+....+..+.|+++|+.+..+.
T Consensus 255 d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp TTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred hhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEE
Confidence 233455566666555332222222233588999999999866665
Q ss_pred CCC--cEEEEeCCCCeeeeEEe
Q 013873 291 YDR--TIRIFQYNGGRSREIYH 310 (434)
Q Consensus 291 ~d~--~i~iwd~~~~~~~~~~~ 310 (434)
.++ .|.+||..+.+....+.
T Consensus 335 ~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E--TTEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEECCCcEEEEEEE
Confidence 443 69999999998877765
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=5.2e-12 Score=104.13 Aligned_cols=195 Identities=18% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC----CCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA----NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
..+++++.+.+.. ..|+.|-..|++.-+.+. .....+.+..|...|..+-|+....++++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 5689999999997 899999999999988654 34556667789999999999998899999999977654434433
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEE--EEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD--IWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~--i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
........ .....++.+.-. +...++ +.+. -.......++..+.+|.+.+.+++|.|.. .
T Consensus 147 ~~lg~Y~~-------------~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~ 210 (404)
T KOG1409|consen 147 NRLGGYNF-------------ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-R 210 (404)
T ss_pred CcccceEe-------------eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-c
Confidence 32211111 000000111001 222222 3332 23445567888999999999999999976 8
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
+|.+|..|..+.+||+-...-.. ....+|...|..+..-+--+.+++++.||.|.+
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~------------------------~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTA------------------------YELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred EEEeccccCceEEEeccCCccee------------------------eeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 99999999999999987554322 233467777777777776677888888888888
Q ss_pred EeCC
Q 013873 298 FQYN 301 (434)
Q Consensus 298 wd~~ 301 (434)
||++
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 8765
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2e-12 Score=113.52 Aligned_cols=207 Identities=14% Similarity=0.209 Sum_probs=153.6
Q ss_pred EEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
.++++.-. .-|+.++....|+-++++.|+.+..|....+.++++..++...+|++|+.+|.|-.||.+.........
T Consensus 138 Dm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~-- 214 (703)
T KOG2321|consen 138 DMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD-- 214 (703)
T ss_pred cccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee--
Confidence 34454443 335555556789999999999999998888999999999988899999999999999987664321111
Q ss_pred CCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEE
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 230 (434)
....-...........|+++.|..+| -.+++|+.+|.+.|
T Consensus 215 ---------------------------------------~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~i 254 (703)
T KOG2321|consen 215 ---------------------------------------AASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLI 254 (703)
T ss_pred ---------------------------------------cccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEE
Confidence 00000000011123458999999887 78999999999999
Q ss_pred EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeeeeE
Q 013873 231 YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQYNGGRSREI 308 (434)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~ 308 (434)
||++...+...- ..+...+|..+.|.+. ++.+++.. ...++|||-.+|+....
T Consensus 255 yDLRa~~pl~~k------------------------dh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 255 YDLRASKPLLVK------------------------DHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMAS 309 (703)
T ss_pred EEcccCCceeec------------------------ccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceee
Confidence 999998876432 1234568899999875 44565554 57799999999998877
Q ss_pred EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 309 YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 309 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+... ..+..+|+-|++.+++++..++.+..|=+....
T Consensus 310 iEpt--~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 310 IEPT--SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccc--CCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 7655 569999999999999999999888888766543
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.2e-13 Score=114.81 Aligned_cols=276 Identities=17% Similarity=0.268 Sum_probs=188.4
Q ss_pred hhhhcccc-ccccccCCCCCeEEEEeCCCC-CceEEeeeCCCcEEEEeCCCCc-e--eEEeeccCCCeeEEEEcCCC-Ce
Q 013873 50 LEKIFARP-FIGALDGHRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRR-T--VCQYSGHQGAVRGLTVSTDG-RI 123 (434)
Q Consensus 50 ~~~~~~~~-~~~~l~~h~~~V~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~-~--~~~~~~h~~~v~~i~~~~~~-~~ 123 (434)
+|+..... .+..-.||...|..-.|-|.. ...+++++.||.|++=.+.... . ...+..|.++|..++.-|+. .-
T Consensus 168 ~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~ 247 (559)
T KOG1334|consen 168 VWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKP 247 (559)
T ss_pred eehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCc
Confidence 44444333 334447899999999998863 4679999999999998764332 2 33456799999999999854 46
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC---ceEEEeeccCCC-EEEEeCCe--EEEEeCCCCcc--
Q 013873 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN---SFWAVDHQWEGD-LFATAGAQ--VDIWNHNRSQP-- 195 (434)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~--i~i~d~~~~~~-- 195 (434)
|++++.|+.+.-+|+........+.. ...... ....++..|... .+++++.+ +++||.+.-..
T Consensus 248 f~S~geD~~v~~~Dlr~~~pa~~~~c---------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 248 FLSCGEDAVVFHIDLRQDVPAEKFVC---------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred ccccccccceeeeeeccCCccceeee---------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 88999999999999887654322211 111112 456788888665 56666543 89999765322
Q ss_pred ----eeeeec------CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 196 ----INSFQW------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 196 ----~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
+..+.. ..-.|++++++.++.. |++...|-.|+++.-..+.-....... . ......+
T Consensus 319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSYnDe~IYLF~~~~~~G~~p~~~s-----------~-~~~~~k~ 385 (559)
T KOG1334|consen 319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASYNDEDIYLFNKSMGDGSEPDPSS-----------P-REQYVKR 385 (559)
T ss_pred ccchhhhcCCccccccCcccceeEEecCCccc-eeeeecccceEEeccccccCCCCCCCc-----------c-hhhccch
Confidence 233322 2346999999977744 556677888999853322110000000 0 0011223
Q ss_pred eeeCccc--CeEEEE-EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 266 VHMGHES--AVMDID-YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 266 ~~~~~~~--~i~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
++.+|.+ .|.++- |-|...|+++|+..|.|.||+-.+++.+..+...+ .-|+|+.-+|--..||+++-|..|+||-
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc-ceEeccCCCCCCchhhccCCccceeeec
Confidence 3567765 355554 57788999999999999999999999887776665 4899999999999999999999999998
Q ss_pred cCcccc
Q 013873 343 AKASEQ 348 (434)
Q Consensus 343 ~~~~~~ 348 (434)
..+.+.
T Consensus 465 P~~~er 470 (559)
T KOG1334|consen 465 PLTAER 470 (559)
T ss_pred CCcccc
Confidence 755443
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3e-11 Score=111.39 Aligned_cols=216 Identities=10% Similarity=0.059 Sum_probs=131.2
Q ss_pred cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC-CC--cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCce
Q 013873 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DC--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (434)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (434)
.|.++|...... ..+..+...+.+..|+|||+.|+..+. ++ .|.+||+.++... .........
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------~lt~~~g~~ 264 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------KVTSFPGIN 264 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------EecCCCCCc
Confidence 677778755443 445556778999999999998887654 33 5888888765321 111112223
Q ss_pred EEEeeccCCCEEEEe---CC--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEccCCCcc
Q 013873 167 WAVDHQWEGDLFATA---GA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPA 239 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~---~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~ 239 (434)
....|+|+|..++.. ++ +|.++|+.+++.. .+..+.......+|+|++..++++...+|. |.++|+.++...
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 457899999977653 23 4888899877643 344444556788999999656666555555 444455443321
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCeeeeEEeccCCcc
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-R--TIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
.+ . .........+|+|||++|+..+.+ + .|.++|+.++...... .. ..
T Consensus 344 -~L-----------------------t--~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~~--~~ 394 (448)
T PRK04792 344 -RL-----------------------T--FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT-ST--RL 394 (448)
T ss_pred -EE-----------------------e--cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc-CC--CC
Confidence 11 0 111122346899999998776653 3 4666788877653322 21 11
Q ss_pred EEEEEEcCCCCEEEEeeC-CCc--EEEeecCcccccc
Q 013873 317 VFCVKFSCDASYVISGSD-DTN--LRLWKAKASEQLG 350 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~-dg~--v~vw~~~~~~~~~ 350 (434)
.....|+|||++|+..+. +|. +.+++.+ +....
T Consensus 395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 224579999998876554 343 6666763 44333
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.9e-11 Score=110.50 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=134.8
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE---EEeeCCC--cEEEeeCCCCCCCCCCCCCCCCCCceeEEEec
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL---VSCGTDC--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK 163 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l---~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (434)
..|.+.|...+.. ..+......+.+-.|+|||+.+ ++...+| .|.+.++..+. ........
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~~~lt~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------GKKILALQ 230 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-------------ceEeecCC
Confidence 4677888765544 3444455667788999999742 3444444 46666776553 22222233
Q ss_pred CceEEEeeccCCCEEEEeC---C--eEEE--EeCCCC---cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 164 NSFWAVDHQWEGDLFATAG---A--QVDI--WNHNRS---QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~---~--~i~i--~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
.......|+|||..++... + ++.+ |++..+ ................+|+|+|..++++...+|...+|.+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 4445678999998776532 2 3444 666542 2222222222344678999999555555556676566644
Q ss_pred cCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEEe
Q 013873 234 RMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYH 310 (434)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~ 310 (434)
...... .....+..+...+....|||||+.|+..+.+ ..|.+||+.+++......
T Consensus 311 ~~~~~g----------------------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~ 368 (428)
T PRK01029 311 QIDPEG----------------------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT 368 (428)
T ss_pred ECcccc----------------------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence 321000 0001112233456778999999998876543 369999999887654432
Q ss_pred ccCCccEEEEEEcCCCCEEEEeeC---CCcEEEeecCccccc
Q 013873 311 TKRMQRVFCVKFSCDASYVISGSD---DTNLRLWKAKASEQL 349 (434)
Q Consensus 311 ~~~~~~v~~~~~s~~~~~l~s~~~---dg~v~vw~~~~~~~~ 349 (434)
. ...+....|+|||++|+.... .+.|++|++..++..
T Consensus 369 ~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 369 S--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred C--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 2 235677999999998875432 356888898877654
No 247
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=1.8e-12 Score=105.38 Aligned_cols=270 Identities=19% Similarity=0.271 Sum_probs=175.1
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-----eeEEeeccC------------CCeeEEEEcCCCC--eEE
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQ------------GAVRGLTVSTDGR--ILV 125 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~--~l~ 125 (434)
..+.|+++.|...| .+|++|...|.|.+|.-+... ....+++|. ..|..|.|..++. .++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35679999999998 999999999999999865432 233455554 3688888876543 566
Q ss_pred EeeCCCcEEEeeCCCCCCC--------CCCCCCCC-----------------------CCCceeEEEecCceEEEeeccC
Q 013873 126 SCGTDCTVKLWNVPVATLT--------DSDDSTDN-----------------------SSEPLAVYVWKNSFWAVDHQWE 174 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~--------~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 174 (434)
..+.|.+|++|.+....+. ..+..... ....+....|...+.++.+..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 6788999999998654221 00000000 0000111233446778889999
Q ss_pred CCEEEEeCC-eEEEEeCCCCcc---eeeeecC-----CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee
Q 013873 175 GDLFATAGA-QVDIWNHNRSQP---INSFQWG-----TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (434)
Q Consensus 175 ~~~~~~~~~-~i~i~d~~~~~~---~~~~~~~-----~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 245 (434)
...+++++. .|.+|++..... +..++.| ..-|++..|+|...++|...++.|.|++-|++.......
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn---- 259 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN---- 259 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----
Confidence 888888875 699999865432 2222223 246889999999888999999999999999985432110
Q ss_pred ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-eeeEEeccC-----------
Q 013873 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR-SREIYHTKR----------- 313 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~----------- 313 (434)
....+.....+.....+.+-...|..+.|+++|+++++-+. -+|++||.+..+ ++.+...+.
T Consensus 260 -----~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE 333 (460)
T COG5170 260 -----SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE 333 (460)
T ss_pred -----chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence 00001111111112223344567889999999999988764 679999997654 333332111
Q ss_pred CccE---EEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 314 MQRV---FCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 314 ~~~v---~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
...| ..+.||.|.+.+++|+..+..-+|-+.+
T Consensus 334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 1122 3578899999999999888888887543
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3.1e-12 Score=119.90 Aligned_cols=194 Identities=15% Similarity=0.260 Sum_probs=146.8
Q ss_pred EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc
Q 013873 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194 (434)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~ 194 (434)
+.-+...++.+..+..+.+||.............. .+.. .....+-.+++.-+++++. +.|.+|+....+
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e---r~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE---RCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCc---eEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 33455678888888899999987665433322211 1100 1112233445555666665 779999988544
Q ss_pred ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 195 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
.-..+.+|.+.|.++.++.+| .++++.+.|.++++|++.+.+.... ...+|+..|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~------------------------~~fgHsaRv 221 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGC------------------------TGFGHSARV 221 (967)
T ss_pred CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCc------------------------cccccccee
Confidence 444688999999999999988 8999999999999999998765541 223899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 275 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
..+.|+|+ .+++++.|.+.++|+.+.. .+..+..+....+..++..++...++|++.||.+++|++...
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999998 9999999999999977644 444676666688999999999999999999999999998654
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.8e-11 Score=107.71 Aligned_cols=223 Identities=10% Similarity=0.027 Sum_probs=132.9
Q ss_pred CCCCeEEEEeCCCCCc--eEEeeeCCC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC-----CCcEEE
Q 013873 65 HRDGISCMAKNPNYLK--GFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-----DCTVKL 135 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~--~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----dg~v~i 135 (434)
+...+..-+|+|||.. ++++...+| .|++.++.+++... +....+......|+|||+.|+..+. |..+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3445667789999833 233444444 58888988776433 3334455667899999998886553 223444
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEec-CceEEEeeccCCCEEEEeC---Ce--EEEEeCCC-CcceeeeecCCCceEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAG---AQ--VDIWNHNR-SQPINSFQWGTDTVIS 208 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~--i~i~d~~~-~~~~~~~~~~~~~i~~ 208 (434)
|++..+.. .......... .......|+|||..++... +. +.++++.. +.....+..+...+..
T Consensus 262 ~~~~~g~~----------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 262 FSLETGAI----------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred eecccCCC----------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence 66654311 1122222221 2335678999999666432 33 55556543 2333444444456678
Q ss_pred EEEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 209 VRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
..|+|+|..+++++..+| .|.+||+.++.... + ......+....|+|||+.|
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L-------------------------t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-L-------------------------TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-c-------------------------cCCCCCccceEECCCCCEE
Confidence 899999955555544433 58888887654321 1 1122345678999999987
Q ss_pred EEEeC---CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 287 VTGSY---DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 287 ~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
+..+. ...|.++|+.+++....... .+.+...+|+|-.
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCCC
Confidence 75443 35688999988776544432 2456678888753
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=1.3e-11 Score=101.79 Aligned_cols=243 Identities=13% Similarity=0.198 Sum_probs=156.8
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEe-CCCCceeEEe-eccCCCeeEEEEcCCCCeEEEeeCCCcE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD-IANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDCTV 133 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd-~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg~v 133 (434)
..+++.+.||.+.|++...-|.. .-+++.+.|.+++||- .+.++.-..+ .....+++++.+.++...|+.|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34677889999999999998876 7799999999999995 3344443333 2245789999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
.-+.+...- +....+.....|...+..+-|+-
T Consensus 93 tefs~sedf------------------------------------------------nkm~~~r~~~~h~~~v~~~if~~ 124 (404)
T KOG1409|consen 93 TEFALSEDF------------------------------------------------NKMTFLKDYLAHQARVSAIVFSL 124 (404)
T ss_pred EEEEhhhhh------------------------------------------------hhcchhhhhhhhhcceeeEEecC
Confidence 888764321 11111222222333333333333
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEe---------------eecCceeEEEeeC-CCCccceeeeeCcccCeEEE
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIM---------------RANEDCNCYSYDS-RKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 277 (434)
.. ..+++.+.|..+.---.+.+.....+.. .+...+.+..... .+.-.+...+.+|.+.+.++
T Consensus 125 ~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 125 TH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL 203 (404)
T ss_pred Cc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEE
Confidence 22 2333333333322222222111111111 1111111111110 11123445667999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+|.|....|++|..|..+.+||+-..+-.......|...|..+...+--+.+.+++.||.|.+|+.+....
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 99999999999999999999999876655555555557888888888888899999999999999986544
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=3.4e-11 Score=111.34 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=125.8
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCC---CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE-eeCCC--cE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDC--TV 133 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg--~v 133 (434)
+.+..+...+...+|+|+| ++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|+|+.|+. .+.++ .|
T Consensus 183 ~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred EEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 3344566678899999999 777766543 479999998876543 3345566778999999987764 44444 58
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
.+|++.++..... ...........|+|++..++... + .|.++|+.+++. ..+..+......
T Consensus 261 ~~~d~~~~~~~~l-------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~ 326 (417)
T TIGR02800 261 YVMDLDGKQLTRL-------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCEEEC-------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccC
Confidence 8888876532211 11111223457889998766432 2 588888877654 334434556678
Q ss_pred EEEcCCCCcEEEEEecCC---cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 209 VRFNPAEPNVLATTASDR---SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
..|+|++ ..++.++.++ .|.+||+.+... ..+ .. ........|+|+|++
T Consensus 327 ~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-~~l-------------------------~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 327 PSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-RVL-------------------------TD-TGLDESPSFAPNGRM 378 (417)
T ss_pred eEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-EEc-------------------------cC-CCCCCCceECCCCCE
Confidence 8999998 5555555554 677788765321 111 01 112234579999998
Q ss_pred EEEEeCCC---cEEEEeCCC
Q 013873 286 FVTGSYDR---TIRIFQYNG 302 (434)
Q Consensus 286 l~~~~~d~---~i~iwd~~~ 302 (434)
|+..+.++ .+.+.+...
T Consensus 379 l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 379 ILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEEeCCCcEEEEEEECCC
Confidence 88777654 355555543
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.3e-11 Score=110.74 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=132.4
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCC---CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCC--cEE
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDC--TVK 134 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg--~v~ 134 (434)
.+..|...+....|+|+| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|+ +...+| .|.
T Consensus 193 ~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 193 TLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred EEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 344566788999999999 766655433 369999998876533 333344556789999999887 444455 577
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+||+.++.... ............|+|+|..++... + .|+++++.+++... +..........
T Consensus 271 ~~d~~~~~~~~-------------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~ 336 (430)
T PRK00178 271 VMDLASRQLSR-------------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARP 336 (430)
T ss_pred EEECCCCCeEE-------------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccce
Confidence 88887664321 111122334567999998765433 2 48888887776432 22222334457
Q ss_pred EEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 210 RFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
.|+|++..++++...++ .|.+||+.++.. ..+ .+........|+|||+.++
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l--------------------------t~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL--------------------------TDTSLDESPSVAPNGTMLI 389 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc--------------------------cCCCCCCCceECCCCCEEE
Confidence 89999955444444444 467777765432 111 0111122457999999987
Q ss_pred EEeCC---CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC
Q 013873 288 TGSYD---RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 288 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
..+.+ ..|.++++..+.. ..+.. ..+.+...+|+|-
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~~-~~l~~-~~g~~~~p~ws~~ 428 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRVR-LPLPT-AQGEVREPSWSPY 428 (430)
T ss_pred EEEecCCceEEEEEECCCCce-EECcC-CCCCcCCCccCCC
Confidence 76654 3477777764433 22322 2245666777763
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1e-12 Score=129.23 Aligned_cols=201 Identities=19% Similarity=0.419 Sum_probs=158.7
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
..|-..|.++.-+|.. .+.+||+.||.|++|....++.+..+. .-...|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 3456788999999987 888999999999999999988877764 2237899999999999999999999999999741
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
++....++|......+.|-. .++++
T Consensus 2283 ----------------------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~t 2307 (2439)
T KOG1064|consen 2283 ----------------------------------------------------KPYTSWQCHNKALSDFRFIG---SLLAT 2307 (2439)
T ss_pred ----------------------------------------------------cceeccccCCccccceeeee---hhhhc
Confidence 22344456677777777764 34555
Q ss_pred Ee---cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 222 TA---SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 222 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
++ .++.+.+||........ .+...|.+.++++++-|..++|++||.+|.|++|
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~s------------------------~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNS------------------------LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred cccCCCCCcccchhcccCcccc------------------------eeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 54 46789999975432211 1235799999999999999999999999999999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
|++..+++..+.. ++ ...++++|+..|.++||++.....+.++...
T Consensus 2364 D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred ehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 9998777655543 44 5668999999999999999999888887543
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=6.4e-11 Score=109.20 Aligned_cols=215 Identities=12% Similarity=0.113 Sum_probs=126.4
Q ss_pred CCCCeEEEEeCCCCCceEEeeeC-CC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE-eeCCCc--EEEeeC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSM-DG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCT--VKLWNV 138 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg~--v~iwd~ 138 (434)
+...+.+..|+||| +.|+..+. ++ .|++||+.+++... +....+......|+|+|+.|+. .+.+|. |.+||+
T Consensus 216 ~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 216 SPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 34466788999999 66665443 33 58899998876532 2222334457899999997765 456665 667777
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
.++... .............|+|+|..++... + .|.++|+.+++... +..........+|+|
T Consensus 294 ~tg~~~-------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~Sp 359 (448)
T PRK04792 294 ATKALT-------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITP 359 (448)
T ss_pred CCCCeE-------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECC
Confidence 655321 1111222345678999998776543 2 47888887776433 222222334578999
Q ss_pred CCCcEEEEEecCCcEEE--EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 214 AEPNVLATTASDRSITL--YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
++..++++...++...+ +|+.++... .+ ... .......|+|||+.|+..+.
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~l-------------------------t~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAMQ-VL-------------------------TST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCeE-Ec-------------------------cCC-CCCCCceECCCCCEEEEEEe
Confidence 99655555555554444 555443221 11 001 11123479999998776654
Q ss_pred C-C--cEEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 292 D-R--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 292 d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
+ + .+.+++.. +.....+... .+.+...+|+|
T Consensus 413 ~~g~~~l~~~~~~-G~~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 413 YQGKQVLAAVSID-GRFKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECC-CCceEECcCC-CCCcCCCccCC
Confidence 3 3 37777875 4443444332 24567788887
No 255
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.38 E-value=1.2e-11 Score=98.13 Aligned_cols=245 Identities=12% Similarity=0.135 Sum_probs=149.2
Q ss_pred ccccccCCCC-CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce------------eEEeeccCCCeeEEEEcCCCCeE
Q 013873 58 FIGALDGHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT------------VCQYSGHQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 58 ~~~~l~~h~~-~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~------------~~~~~~h~~~v~~i~~~~~~~~l 124 (434)
.+.+..+|.+ .|+.+.+.-+ ..|+++..++.+.......+.+ .+.+..|.++-.+-+.+-.++.+
T Consensus 27 ~vD~i~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V 104 (319)
T KOG4714|consen 27 LVDEIMQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRV 104 (319)
T ss_pred chhhcccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCce
Confidence 4444444443 3666777765 6788888887777665544332 22333344333333333446689
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCccee
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPIN 197 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~ 197 (434)
++++.||.+.+++.+.......... .......+......+..+.+++ +..++|+++..+.+.
T Consensus 105 ~~~~~dg~~~v~s~~~~~~~~~~i~-----------~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLALMSRIP-----------SIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred EecCCCceEEEEechHHHhhhhhcc-----------cccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 9999999999999865211110000 0011111222223444444443 236667665543332
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.-......|.+++-+|...+++++|+.||.+.+||.+...... ..+..|..+++.+
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~------------------------S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV------------------------SLLKAHKAEIWEV 229 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH------------------------HHHHHhhhhhhhe
Confidence 2222234599999999988999999999999999998764332 2345899999999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEE------------------------eccCCccEEEEEEcCCCCEEEEe
Q 013873 278 DYSP-TGREFVTGSYDRTIRIFQYNGGRSREIY------------------------HTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 278 ~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
.|+| ++..|++++.||.+.-||..+.- +..- .......|++ |.--|..|++|
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~~~-l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcg 306 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDASTTF-LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCG 306 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCCce-EEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEec
Confidence 9999 67889999999999999987421 1110 0000012222 33357789999
Q ss_pred eCCCcEEEee
Q 013873 333 SDDTNLRLWK 342 (434)
Q Consensus 333 ~~dg~v~vw~ 342 (434)
++-+.|++++
T Consensus 307 td~eaIyl~~ 316 (319)
T KOG4714|consen 307 TDAEAIYLTR 316 (319)
T ss_pred cccceEEEec
Confidence 9888888865
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=1.5e-09 Score=109.41 Aligned_cols=270 Identities=13% Similarity=0.163 Sum_probs=163.5
Q ss_pred EEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec--c------------CCCeeEEEEcCCCCeEEEee-CCCcEE
Q 013873 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--H------------QGAVRGLTVSTDGRILVSCG-TDCTVK 134 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h------------~~~v~~i~~~~~~~~l~s~~-~dg~v~ 134 (434)
..+++++.++.++++-+.++.|++||.. +..+..+.+ . -.....+++.+++..|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4578887643677777888999999975 444433322 1 12357889999887666654 457799
Q ss_pred EeeCCCCCCCCCCCCCC----CCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeeeec------
Q 013873 135 LWNVPVATLTDSDDSTD----NSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQW------ 201 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~------ 201 (434)
++|..++.......... ...........-..-..+++++ ++.++++.. +.|.+||..++... .+.+
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 99987654321100000 0000000000012235788898 555666544 45999998766432 1111
Q ss_pred ---------CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCc--eeEEEe-eCCCCccceeeeeC
Q 013873 202 ---------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANED--CNCYSY-DSRKLDEAKCVHMG 269 (434)
Q Consensus 202 ---------~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 269 (434)
.-.....++++|++..++++-+.++.|++||+.++.. .+...+... ...+.+ +...... ..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~-----~~ 801 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGS-----EV 801 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCchh-----hh
Confidence 0123467999999866788888889999999886542 111111000 000000 0000000 01
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc------------CCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK------------RMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
.-....+++++++|+.+++-+.++.|++||..++........+ .......++++++|+++++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 1123458899999999888889999999999887665443211 1124678999999998888889999
Q ss_pred EEEeecCcccc
Q 013873 338 LRLWKAKASEQ 348 (434)
Q Consensus 338 v~vw~~~~~~~ 348 (434)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988765
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=9.2e-09 Score=86.27 Aligned_cols=266 Identities=11% Similarity=0.142 Sum_probs=167.7
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeC---CCcEEEEeCCC--CceeE--EeeccCCCeeEEEEcCCCCeEEEeeC-CCcE
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIAN--RRTVC--QYSGHQGAVRGLTVSTDGRILVSCGT-DCTV 133 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~--~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v 133 (434)
+-.+.+..+-|+|+|++ +.|+++-. +|.|-.|.++. |+... .......+-+.+++++++++|+++.. -|.|
T Consensus 35 ~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 35 LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 34567889999999998 78888754 47787777764 44322 12222234478999999999998865 5889
Q ss_pred EEeeCCC-CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeee---cCCCce
Q 013873 134 KLWNVPV-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ---WGTDTV 206 (434)
Q Consensus 134 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~---~~~~~i 206 (434)
.++-+.. +.+......................+....+.|+++++++.+ ..|.+|++..++....-. ......
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9999865 333221111111111011111122367788999999999987 359999998765432211 123456
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
..|.|+|++....++.-.+++|.+|...... ....+... .....-+ ........|.++|||++
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i---------------~tlP~dF-~g~~~~aaIhis~dGrF 257 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI---------------DTLPEDF-TGTNWAAAIHISPDGRF 257 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee---------------ccCcccc-CCCCceeEEEECCCCCE
Confidence 8899999996555666679999999988751 11111100 0000011 22446678999999999
Q ss_pred EEEEeC-CCcEEEEeCCC--CeeeeEE-eccCCccEEEEEEcCCCCEEEEeeCC-CcEEEeecC
Q 013873 286 FVTGSY-DRTIRIFQYNG--GRSREIY-HTKRMQRVFCVKFSCDASYVISGSDD-TNLRLWKAK 344 (434)
Q Consensus 286 l~~~~~-d~~i~iwd~~~--~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~vw~~~ 344 (434)
|.++.. ...|.+|.+.. +++.... ...+........|+++|++|++++.+ ..|.+|.++
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 988864 34688887754 3332222 22222346789999999999988864 468888775
No 258
>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery [].
Probab=99.36 E-value=5.7e-12 Score=83.73 Aligned_cols=86 Identities=55% Similarity=0.953 Sum_probs=82.7
Q ss_pred cccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccch
Q 013873 345 ASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRRTMMEAERRKAERRKAHSAPGSIVTEPV 424 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (434)
..+.++++.+++...+.|.+.|.++|.|.++|..|+.|.+.|..|+.+.....++.+..+++|+|.+.+++++.++..++
T Consensus 3 ASeklG~ls~REr~~l~Y~~~Lkekyk~~pEIrRI~rhRhvPK~I~~a~~~k~~~~~a~~RKe~nrr~hsk~~~~~~~~e 82 (88)
T PF04158_consen 3 ASEKLGVLSPRERAALEYREALKEKYKHMPEIRRIARHRHVPKAIKKAQKIKREMKEAEKRKEENRRKHSKPGAVPPKPE 82 (88)
T ss_pred cchhcCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccce
Q 013873 425 RKRRII 430 (434)
Q Consensus 425 ~~k~~~ 430 (434)
|+|.||
T Consensus 83 rkk~vv 88 (88)
T PF04158_consen 83 RKKHVV 88 (88)
T ss_pred cccCCC
Confidence 999886
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1e-10 Score=103.50 Aligned_cols=195 Identities=12% Similarity=0.179 Sum_probs=140.9
Q ss_pred CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeec--------------cCCCEEEE--eC
Q 013873 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ--------------WEGDLFAT--AG 182 (434)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~--~~ 182 (434)
|...++|....||.+++|+...++....+..............+. ..+..+ .+..+++- ..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 456789999999999999998887655443332211111111111 111111 22233333 34
Q ss_pred CeEEEEeCCCCcceeeee--cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 183 AQVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
|.|.+|+...++....+. .|.+.|.++.++.+- ..|.+++.|+.+..|+.......+..
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~------------------ 140 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW------------------ 140 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee------------------
Confidence 789999999998887776 578899999998876 78999999999999998776544432
Q ss_pred ccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC-----CCEEEEe-eC
Q 013873 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-----ASYVISG-SD 334 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~-~~ 334 (434)
......+.+++++|||..+++++ +.|++||+++++.+..+.+ |.++|.+++|-.+ |.+++++ ..
T Consensus 141 -------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 141 -------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred -------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeecccc
Confidence 35566788999999999999987 7899999999998888755 4599999999776 6666654 44
Q ss_pred CCcEEEeecCc
Q 013873 335 DTNLRLWKAKA 345 (434)
Q Consensus 335 dg~v~vw~~~~ 345 (434)
+..+.+|-+..
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 56688887765
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1.2e-10 Score=94.22 Aligned_cols=227 Identities=15% Similarity=0.207 Sum_probs=149.1
Q ss_pred CCCcEEEEeCCCCceeE--Ee-eccCCCeeEEEEcC---CCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 87 MDGDIRLWDIANRRTVC--QY-SGHQGAVRGLTVST---DGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~--~~-~~h~~~v~~i~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..|.+.+|++.+.+... ++ ...++.+..+.|.- +|. .++-+..+|.|.++..........+.... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------S 116 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-------h
Confidence 34789999988765433 11 22345677788864 455 56677788999999865432211111110 0
Q ss_pred EEecC-ceEEEeeccCCCEEEEeC--CeEEEEeCCCCc--ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 160 YVWKN-SFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
..... ...++.|++.+.-++++. |++.+.+..... .++..+.|.-.+....|+...++++.+|+.||.+..||+|
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 00001 245677888887777766 556655544443 3347788999999999999999999999999999999999
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CeeeeEEecc
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNG-GRSREIYHTK 312 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~ 312 (434)
.+. ++. |. ...-|...|.++.-+| .+.++++|+.|-.|++||.++ ++++.. ..
T Consensus 197 ~p~---~~i-----------~~---------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--~~ 251 (339)
T KOG0280|consen 197 IPK---TFI-----------WH---------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--AK 251 (339)
T ss_pred CCc---cee-----------ee---------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc--Cc
Confidence 432 111 10 1125888999998887 578999999999999999984 444333 33
Q ss_pred CCccEEEEEEcCC--CCEEEEeeCCCcEEEeecCcc
Q 013873 313 RMQRVFCVKFSCD--ASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 313 ~~~~v~~~~~s~~--~~~l~s~~~dg~v~vw~~~~~ 346 (434)
..+.|+.+.++|. +++|+++ .-.-.+|-+.+.+
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred cccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 3478999999994 3334443 3334666666544
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.3e-10 Score=105.05 Aligned_cols=248 Identities=10% Similarity=0.105 Sum_probs=156.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---------------eeEEeeccCCCeeEEEEcCCCCeEEEeeCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---------------TVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 130 (434)
.....|++|+... .++|+|+.||.++|..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-++..+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4568899999997 999999999999999876431 234578999999999999999999999999
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeecCCCceEE
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGTDTVIS 208 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (434)
|.|.+|-+-.+... ........++.+.+++|..+|..++.. +|.|.+=.+...+.. .-.........
T Consensus 93 GlIiVWmlykgsW~----------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw-gKeLkg~~l~h 161 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWC----------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW-GKELKGQLLAH 161 (1189)
T ss_pred ceEEEEeeecccHH----------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-chhcchheccc
Confidence 99999998777542 112222334567788888888765543 455554444332211 11111122446
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCc-----ce--------------------------------EEEeeecCcee
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSP-----AR--------------------------------KVIMRANEDCN 251 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~--------------------------------~~~~~~~~~~~ 251 (434)
+.|+++. ..++.+-..|.+.+||....-. .. .........+.
T Consensus 162 v~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 8899987 5666677788999998653210 00 00111111122
Q ss_pred EEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCeeeeEEeccCCccEEEEEE
Q 013873 252 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---------TIRIFQYNGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
+.+....+...+..+.. .-.+.+..|+++|..|+.+|.|. .|.+|.. -|.....+.... ..|++++|
T Consensus 241 ~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg-~~It~lsW 316 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPG-SCITGLSW 316 (1189)
T ss_pred ehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCC-ceeeeeEE
Confidence 22211222223333322 35688899999999999998753 4666654 344445554443 67888888
Q ss_pred cCCCCEEE
Q 013873 323 SCDASYVI 330 (434)
Q Consensus 323 s~~~~~l~ 330 (434)
-..|-.++
T Consensus 317 Eg~gLriA 324 (1189)
T KOG2041|consen 317 EGTGLRIA 324 (1189)
T ss_pred cCCceEEE
Confidence 66554443
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=3.7e-10 Score=106.35 Aligned_cols=146 Identities=19% Similarity=0.352 Sum_probs=118.1
Q ss_pred eCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC
Q 013873 74 KNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS 153 (434)
Q Consensus 74 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (434)
++++. -++++|+.-|.|.+|+......-..+.+|.+.|.++.|+.+|.++++++.|.++++|++++.+..
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------- 210 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------- 210 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------
Confidence 45554 78999999999999998754444468899999999999999999999999999999999988642
Q ss_pred CCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCC-CceEEEEEcCCCCcEEEEEecCCcEEE
Q 013873 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITL 230 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i 230 (434)
....+.|...++.+.+.|+ .+++++- +.++|+.+. ..+..+..|. ..|..++..+.. ...+|++.||.+++
T Consensus 211 --~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 211 --GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKL 284 (967)
T ss_pred --CcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhh
Confidence 2456778889999999999 6666664 489996654 3344666664 468888888866 78999999999999
Q ss_pred EEccC
Q 013873 231 YDLRM 235 (434)
Q Consensus 231 wd~~~ 235 (434)
||+..
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 99753
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=8.3e-10 Score=96.07 Aligned_cols=261 Identities=14% Similarity=0.231 Sum_probs=167.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC-------------
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC------------- 131 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg------------- 131 (434)
-.-++..++|||.| .+|++.... .|.+|.-.....+..+. | ..|..+.|+|+++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 45688999999999 888887765 48999988877666665 3 4689999999999999876543
Q ss_pred --cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCc---ceeeeecCCCc
Q 013873 132 --TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQ---PINSFQWGTDT 205 (434)
Q Consensus 132 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~---~~~~~~~~~~~ 205 (434)
.+.+||+.++.++..+...... .....-+.|+-+..+++-- +.++.|+++...- +...+. ...
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~---------~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~g 175 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQP---------YLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVG 175 (561)
T ss_pred cCceeEEeccCceeEeeccccCCc---------ccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccc
Confidence 4999999998776655443322 0111245666666665544 4569999962211 122222 356
Q ss_pred eEEEEEcCCCCc-EEEE-----EecCCcEEEEEccCCCcceEEEee-----------------------------ecCce
Q 013873 206 VISVRFNPAEPN-VLAT-----TASDRSITLYDLRMSSPARKVIMR-----------------------------ANEDC 250 (434)
Q Consensus 206 i~~i~~~~~~~~-~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~~~ 250 (434)
|....|+|.+.+ .|+. ++.++.+++|.+.....+....+. .-...
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 888889987422 2333 456788999998766544432211 11224
Q ss_pred eEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCE
Q 013873 251 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 328 (434)
++++++.....-... ....++|...+|.|.++.+++.+ .+..+.++|++.+ ....+.. ..=..+.|+|.+++
T Consensus 256 nLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe---~~rNT~~fsp~~r~ 329 (561)
T COG5354 256 NLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE---QKRNTIFFSPHERY 329 (561)
T ss_pred eEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC---cccccccccCcccE
Confidence 455555553333222 25578999999999988766654 6888999999876 3222211 22344667777777
Q ss_pred EEEeeCC---CcEEEeecCcc
Q 013873 329 VISGSDD---TNLRLWKAKAS 346 (434)
Q Consensus 329 l~s~~~d---g~v~vw~~~~~ 346 (434)
++.++-| |.+-+|+....
T Consensus 330 il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred EEEecCCccccceEEeccCCc
Confidence 7665543 56677766543
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=6.8e-10 Score=98.37 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=141.9
Q ss_pred CceEEeeeCCCcEEEEeCCCCceeEEeec---cCCCeeEEEEc--------------------CCCCeEEEeeCCCcEEE
Q 013873 79 LKGFFSGSMDGDIRLWDIANRRTVCQYSG---HQGAVRGLTVS--------------------TDGRILVSCGTDCTVKL 135 (434)
Q Consensus 79 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~i~~~--------------------~~~~~l~s~~~dg~v~i 135 (434)
..++|....||.+++||...++....|.. -++..++..|. .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 38899999999999999999887766642 23444455552 12346778888999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
|++..+++. .......+.+.+.++.++.+-..+.+++++ +..|+....+.+.........+.+++.+|
T Consensus 85 ys~~~g~it----------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 85 YSVAGGEIT----------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred EEecCCeEE----------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 999877542 122223456778888888888888888754 88999999999999999899999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-----CCEEEE
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-----GREFVT 288 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~ 288 (434)
++ ..+++++ +.|++||+.+.+....+ .+|.++|.++.|--+ |.++.+
T Consensus 155 D~-~~l~~as--~~ik~~~~~~kevv~~f-------------------------tgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 155 DG-KILLTAS--RQIKVLDIETKEVVITF-------------------------TGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred CC-CEEEecc--ceEEEEEccCceEEEEe-------------------------cCCCcceEEEEEEEeccccccceeee
Confidence 97 6777765 78999999988766554 699999999999876 677655
Q ss_pred E-eCCCcEEEEeCCC
Q 013873 289 G-SYDRTIRIFQYNG 302 (434)
Q Consensus 289 ~-~~d~~i~iwd~~~ 302 (434)
+ ..+..+.+|-+..
T Consensus 207 sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 207 SAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeEEEEEc
Confidence 4 4455677886554
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=1.8e-10 Score=93.17 Aligned_cols=201 Identities=18% Similarity=0.239 Sum_probs=137.6
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce--eEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
..++.|++.+ ..++++..+|.+.+-+...... .+.++.|.-+++-..|+. +.+.+++||.||.+.-||++...
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 4467788888 7799999999999666555443 347889999999999986 44688999999999999986221
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 225 (434)
. .+| ...+.|...|.+|.-+|..+.++++|+.|
T Consensus 200 ------------~---------------------------~i~--------~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 200 ------------T---------------------------FIW--------HNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred ------------c---------------------------eee--------ecceeeecceEEEecCCCCCceEEEeccc
Confidence 0 011 11234678899999999888999999999
Q ss_pred CcEEEEEccC-CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC--CCEEEEEeCCCcEEEEeCCC
Q 013873 226 RSITLYDLRM-SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 226 g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~ 302 (434)
-.|++||.|+ ++++..- .-.+.|+.+.++|. +..|+++-.+| .+|-+.+.
T Consensus 233 e~i~~~DtRnm~kPl~~~--------------------------~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKA--------------------------KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred cceeeeehhcccCccccC--------------------------ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 9999999984 4443322 23478999999994 34455555555 66766655
Q ss_pred Ceee----eEEeccCCccEEEEEEcCCCCEEEEee-CCCcEE-EeecCccc
Q 013873 303 GRSR----EIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLR-LWKAKASE 347 (434)
Q Consensus 303 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~-vw~~~~~~ 347 (434)
+... ......|.+-...-.|.....+|+|++ .|..++ +|-.-++.
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 4322 112233334455556644456788865 577655 77665543
No 266
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.6e-11 Score=100.50 Aligned_cols=267 Identities=17% Similarity=0.208 Sum_probs=182.5
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC---CceeEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEeeCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN---RRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPV 140 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iwd~~~ 140 (434)
|.+.|+.+..... .++.+++.||.++.|.-.. -+.+..+..|-+.|.+++.+-++..+.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 8888888887765 8999999999999997433 1334556778899999999999999999777 99999999988
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCC--cceeeeecCCCceEEEEEcCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRS--QPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
..+.+-......+............+. .++.+ ++.+.++|-... +....-..|..+|.++.+++.+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s---------~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKIS---------LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeee---------eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 776544443333322222222221221 22222 255888886544 3334445588999999999988
Q ss_pred CcEEEEEecCCcEEEEEccC-CCcceE-EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 216 PNVLATTASDRSITLYDLRM-SSPARK-VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
..+++....|.|..|.... .+.... +.. .... ......+........++.|+|+|..+.+-+.|.
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~-----------~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNF-----------ELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccc-----------cccc-cchhhcccccccCccceEEccccCcccccCccc
Confidence 7888888899999998773 111111 100 0000 000111122345678899999999999999999
Q ss_pred cEEEEeCCCCeeeeEEec--------------------------------cCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 294 TIRIFQYNGGRSREIYHT--------------------------------KRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
.|+++++.+++....+.. +....-+.+.|...|++|+.|+.=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 999999998875543310 1111345678999999999988765 8999
Q ss_pred ecCcccccccCChhh
Q 013873 342 KAKASEQLGVLHPRE 356 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (434)
++.++..++.+-..+
T Consensus 303 n~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDE 317 (558)
T ss_pred EeecCeEEEEeccch
Confidence 999999888775443
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.5e-09 Score=99.31 Aligned_cols=295 Identities=15% Similarity=0.129 Sum_probs=195.2
Q ss_pred cccccccccCCCCCeEEEEeCCCC-----------CceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC---C
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNY-----------LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST---D 120 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~-----------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~---~ 120 (434)
+-+.+..+..|...|+.+.|.|-. .-+||++...|.|.+||...+..+..+..|..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 456677889999999999998731 13578888899999999999998889999999999999976 3
Q ss_pred C-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc----------eeEEEecCceE----------------------
Q 013873 121 G-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP----------LAVYVWKNSFW---------------------- 167 (434)
Q Consensus 121 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---------------------- 167 (434)
. ..|++.....++.+|+..+|............-.+ ......++.+.
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 3 46666677789999998888765332221110000 00000001110
Q ss_pred -------------------------------EEeecc--CCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 168 -------------------------------AVDHQW--EGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 168 -------------------------------~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
.++|+| ...++++-...+.++|++-..++.......+.+.-+.+.|+
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 122233 23355666677888998888888877776776677777776
Q ss_pred CC-cEEEEEecCCcEEEEEccCCCcceE----------------EE----------------------------------
Q 013873 215 EP-NVLATTASDRSITLYDLRMSSPARK----------------VI---------------------------------- 243 (434)
Q Consensus 215 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~----------------~~---------------------------------- 243 (434)
.. ..|+++..||.+.+|--+......+ +.
T Consensus 284 ~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l 363 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQL 363 (1062)
T ss_pred CCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhh
Confidence 53 4678889999999997554110000 00
Q ss_pred -----------------------------------------------------------------------------eee
Q 013873 244 -----------------------------------------------------------------------------MRA 246 (434)
Q Consensus 244 -----------------------------------------------------------------------------~~~ 246 (434)
..+
T Consensus 364 ~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvG 443 (1062)
T KOG1912|consen 364 SNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVG 443 (1062)
T ss_pred hcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEee
Confidence 003
Q ss_pred cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE---------EEeCCCcEEEEeCCCCeeeeEE--eccCCc
Q 013873 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV---------TGSYDRTIRIFQYNGGRSREIY--HTKRMQ 315 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~---------~~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 315 (434)
...|.+.++|..... ....+.-|.+.|.++.|-.+..++- +|+.-+.+.+-|+++|.....- ......
T Consensus 444 T~sGTV~vvdvst~~-v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 444 TNSGTVDVVDVSTNA-VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred cCCceEEEEEecchh-hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 444444444443221 1122346888889998876544332 2233356778899998654433 445568
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 316 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
+|..+..|..++||+..-.|.-+.+||+++...+.
T Consensus 523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred cceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 99999999999999999999999999998776653
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.6e-11 Score=107.71 Aligned_cols=227 Identities=14% Similarity=0.238 Sum_probs=160.7
Q ss_pred eEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe
Q 013873 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA 181 (434)
Q Consensus 102 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
++.+.+|...|..++-..+.+-+++++.|++|++|.+....-. ............++.++..+.+-.+.+.++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeeccceeeec
Confidence 4567799999999988888889999999999999998643210 00001222334567789999999999999999
Q ss_pred CCeEEEEeCCCCcceeeeec--CCCceEEEEEcCC-CCcEEEEE-ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeC
Q 013873 182 GAQVDIWNHNRSQPINSFQW--GTDTVISVRFNPA-EPNVLATT-ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDS 257 (434)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
++.|.+||.-.++++..+.. ..+.+..+...++ ...++++| +...+|+++|.+.......+.+..
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn----------- 871 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN----------- 871 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc-----------
Confidence 99999999988887764432 1233333443333 33455555 778899999999876655443211
Q ss_pred CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
-.+..+.+.+++..|.|++++.+-.+|+|.+.|.++|+.+..+..-. .....++ .|..+.|+....|..
T Consensus 872 ---------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqla-apsdq~L~~saldHs 940 (1034)
T KOG4190|consen 872 ---------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLA-APSDQALAQSALDHS 940 (1034)
T ss_pred ---------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhc-CchhHHHHhhcccce
Confidence 12455678999999999999999999999999999998777664433 2222232 355667777778888
Q ss_pred EEE-eecCcccccccCChh
Q 013873 338 LRL-WKAKASEQLGVLHPR 355 (434)
Q Consensus 338 v~v-w~~~~~~~~~~~~~~ 355 (434)
+.| |..-++....+..++
T Consensus 941 laVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 941 LAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred eEeeehhcCCeeeeccCCC
Confidence 888 988777665555443
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.26 E-value=1.9e-08 Score=89.89 Aligned_cols=227 Identities=12% Similarity=0.175 Sum_probs=139.7
Q ss_pred CCCeEEEEeCCCCCceEEeee-CCCcEEEEeCCC-CceeEE---ee----------ccCCCeeEEEEcCCCCeEEEeeC-
Q 013873 66 RDGISCMAKNPNYLKGFFSGS-MDGDIRLWDIAN-RRTVCQ---YS----------GHQGAVRGLTVSTDGRILVSCGT- 129 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~l~s~~~- 129 (434)
...-..++++|++ .+|+++. .+|+|.++++.. +..... +. .......++.|+|+++++++...
T Consensus 86 g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 3455679999998 6666654 589999999987 333222 21 11245678999999998887633
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCC--CCc--ceeeeec-
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHN--RSQ--PINSFQW- 201 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~--~~~--~~~~~~~- 201 (434)
...|.+|+++....... ............-..+.++|++.++...+ +.|.++++. .+. .+..+..
T Consensus 165 ~D~v~~~~~~~~~~~l~-------~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLT-------PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp TTEEEEEEE-TTS-TEE-------EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred CCEEEEEEEeCCCceEE-------EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 34799999876531000 00011122345667899999998876664 568888877 332 2222221
Q ss_pred -----CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 202 -----GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 202 -----~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
.......|.++|++..++++......|.+|++.... .+..+. ..........
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~----------------------~~~~~G~~Pr 295 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ----------------------TVPTGGKFPR 295 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE----------------------EEEESSSSEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE----------------------EEeCCCCCcc
Confidence 122578899999997677777778899999995332 221110 1111233478
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEeC--CCCeeeeEEeccCCccEEEEEE
Q 013873 276 DIDYSPTGREFVTGS-YDRTIRIFQY--NGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
.++++|+|++|+++. .++.|.+|++ .+|.+.............||.|
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 899999999988887 5668999876 5666655543233355667766
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.5e-09 Score=96.91 Aligned_cols=259 Identities=13% Similarity=0.168 Sum_probs=170.5
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC------------CCeEEEeeCCCc
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD------------GRILVSCGTDCT 132 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~------------~~~l~s~~~dg~ 132 (434)
|...-.++.|+|.| ++|-|+ ...|.+-|..+.+.+..+..|...|+.+.|.|. .-.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34447889999986 566665 457999999999999999999999999999762 126778888999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc---CC-CEEE--EeCCeEEEEeCCCCcceeeeecCCCce
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW---EG-DLFA--TAGAQVDIWNHNRSQPINSFQWGTDTV 206 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i 206 (434)
|.+||...+..+..+... ..++..+.|-+ +. .+++ .+.+.+.+|+..+|+............
T Consensus 91 Iil~d~~~~s~~~~l~~~------------~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHS------------NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred EEEEEehhhhhhhhhcCC------------CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 999999877544433333 23334444433 22 2222 344679999999999999988877888
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCC----cceEEEeeecCceeEEEeeCCCCccceeeeeCccc---------C
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSS----PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES---------A 273 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 273 (434)
.|+.+.|-+...|..-+..|.+.+-+.-..+ +...+.+..... |..........-..++. .
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S------dl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS------DLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc------chhhhhhhhhccccccCCCcchhHHHH
Confidence 8899999887778777888887776643222 112222211100 00000000000000000 1
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC--CEEEEeeCCCcEEEeecCc
Q 013873 274 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA--SYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~v~vw~~~~ 345 (434)
...++|+|.-+.++-......+.++|++-..++....... +.+.-+.|-|++ ..|++.-.||.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 1235778866555555567789999999888777765544 445667777765 4789999999999998765
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-10 Score=95.38 Aligned_cols=230 Identities=15% Similarity=0.241 Sum_probs=144.0
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC-----CCCCCCCCCCCCceeEEEecCceEEEeeccCCC----EE
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL-----TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD----LF 178 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 178 (434)
...-|.++.|...|.+|++|..+|.|.++.-..... ...+..+...-.-.........+..+.|.+++. ++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345788999999999999999999999997543321 111122222222223333445667778877664 23
Q ss_pred EEeCCeEEEEeCCCCcce-----------------------------------eee-ecCCCceEEEEEcCCCCcEEEEE
Q 013873 179 ATAGAQVDIWNHNRSQPI-----------------------------------NSF-QWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 179 ~~~~~~i~i~d~~~~~~~-----------------------------------~~~-~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
.+.+.+|.+|-+...... ..+ ..|.-.|.++.++.+.. .+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lS- 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLS- 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEee-
Confidence 334467999976432110 001 12556788999998874 4444
Q ss_pred ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 013873 223 ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 223 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~ 301 (434)
..|=.|.+|++.-......++ |... .-+..-..-|++..|+| ..+.|+..+..|+|++-|++
T Consensus 182 ADdLRINLWnlei~d~sFnIV------------DIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIV------------DIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred ccceeeeeccccccCCceeEE------------Eccc-----cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 457889999987554433331 1100 00112234688889999 45678888889999999998
Q ss_pred CCeeeeE----E-----------eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec-CcccccccCChhhh
Q 013873 302 GGRSREI----Y-----------HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA-KASEQLGVLHPREQ 357 (434)
Q Consensus 302 ~~~~~~~----~-----------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~ 357 (434)
...+... + ...-...|..+.|+++|+||++-+. -+|++||+ ...+.+.+...++.
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 5332111 1 1111246889999999999998764 48999999 55666666655443
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=7.5e-10 Score=93.62 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=76.0
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.+|-.-+++++|+||+++|+++..|..|++-.+.....+..+..+|..-|..++.-++. .|++||.|++|++||+.+|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCC
Confidence 38999999999999999999999999999998887777777777777889999988654 48999999999999999999
Q ss_pred ccccCCh
Q 013873 348 QLGVLHP 354 (434)
Q Consensus 348 ~~~~~~~ 354 (434)
++.+++-
T Consensus 227 ~L~t~dl 233 (390)
T KOG3914|consen 227 LLDTCDL 233 (390)
T ss_pred cccccch
Confidence 9987753
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=1.5e-08 Score=81.26 Aligned_cols=243 Identities=13% Similarity=0.054 Sum_probs=157.0
Q ss_pred EEEEeCCCC----CceEEeeeCCCcEEEEeCCCCcee-EEeeccCCCeeEEEE-cCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 70 SCMAKNPNY----LKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQGAVRGLTV-STDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 70 ~~~~~~~~~----~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~i~~-~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
+.+.|-|.. ..+||.|+.-|...+|...+.+.. +....|...|+-+.= ......+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 345565531 267999999999999999866543 333444443332211 11223466778899999999875532
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCC-cc-ee-eeecCCCceEEEEEcCCCCcE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRS-QP-IN-SFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~-~~-~~-~~~~~~~~i~~i~~~~~~~~~ 218 (434)
........-...++++++++.+.++.+. +|..|.+... +. +. ......+.-.+..|+... ..
T Consensus 151 ------------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~ 217 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ 217 (344)
T ss_pred ------------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence 1111111123778899999999988774 5888877653 22 22 222334556788898877 78
Q ss_pred EEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC--EEEEEeCCCcEE
Q 013873 219 LATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR--EFVTGSYDRTIR 296 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~--~l~~~~~d~~i~ 296 (434)
||++..||++.|||++......... ......|.+.+..+.|+|.|. +|+..-.-+.+.
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~--------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEI--------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhh--------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 9999999999999998765433221 112235899999999998664 456665678899
Q ss_pred EEeCCCCeeeeEEec-------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 297 IFQYNGGRSREIYHT-------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 297 iwd~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+-|++++.....+.. +....|....|+.++.-+.+.+.+ .+.=|++.+.
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 999998876554422 223457788888877766666554 4555666543
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=2.6e-09 Score=90.37 Aligned_cols=158 Identities=8% Similarity=0.068 Sum_probs=108.8
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce----eEEeeccCCCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT----VCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPV 140 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~ 140 (434)
....+..++.+ .+||.+..+....++++..... ..... -...-+++.|..+......+.. ...+.+|....
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 44455667777 8888888887877777654432 22221 2233445555555555554444 44455555443
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--EEEEeCCCCcceeeee-cCCCceEEEEEcCCCCc
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPN 217 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~ 217 (434)
+ .+.....|-+.+..++++||+.++++++.+ |++-.......+..+. +|...|..++..++.
T Consensus 142 ~-------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-- 206 (390)
T KOG3914|consen 142 G-------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-- 206 (390)
T ss_pred c-------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--
Confidence 2 445566777889999999999999999965 7776666555565554 489999999998854
Q ss_pred EEEEEecCCcEEEEEccCCCcceEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~ 242 (434)
.|++|+.|+++++||+++++.+..+
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeeecCCCCcEEEEecccCCccccc
Confidence 5899999999999999999877554
No 275
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.17 E-value=3e-07 Score=78.27 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=143.0
Q ss_pred EEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc-CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCC
Q 013873 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-TDGRILVSCGTDCTVKLWNVPVATLTDSDDS 149 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 149 (434)
+.+|.+....++++--..+.|..|+..++.... +... . ...+.+. +++ .|+.+..+ .+.++|..++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~------ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKV------ 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEE------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcE------
Confidence 578888332777887788999999998876533 3322 2 6677777 564 55555554 455668876632
Q ss_pred CCCCCCceeEEE----ecCceEEEeeccCCCEEEEeC----------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 150 TDNSSEPLAVYV----WKNSFWAVDHQWEGDLFATAG----------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 150 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
....... .......+++.++|.+.++.. +.+..++.. ++. ..+...-...+.++|+|++
T Consensus 73 -----~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 73 -----TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp -----EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTS
T ss_pred -----EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcc
Confidence 1122221 234667899999999888754 336666766 443 3333334567899999999
Q ss_pred CcEEEEEecCCcEEEEEccCCCc-ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 216 PNVLATTASDRSITLYDLRMSSP-ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
..++++-+..+.|..|++..... ..... .........+..-.+++..+|++.++....+.
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRR-------------------VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEE-------------------EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred hheeecccccceeEEEeccccccceeeee-------------------eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 66677778888999999875433 11110 00001111234778999999998888888999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEE-cCCCCEEEEe
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKF-SCDASYVISG 332 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~ 332 (434)
|.++|.+ |+.+..+.... ..+++++| -++.+.|+..
T Consensus 207 I~~~~p~-G~~~~~i~~p~-~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELPV-PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETT-SCEEEEEE-SS-SSEEEEEEESTTSSEEEEE
T ss_pred EEEECCC-ccEEEEEcCCC-CCEEEEEEECCCCCEEEEE
Confidence 9999988 77777776653 57999999 4565655543
No 276
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=2.6e-08 Score=87.06 Aligned_cols=254 Identities=14% Similarity=0.170 Sum_probs=166.0
Q ss_pred HHHhhhhccccccccccCCCCC--eE-EEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-EEeec-cCCCeeEEEEcCCC
Q 013873 47 AAKLEKIFARPFIGALDGHRDG--IS-CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSG-HQGAVRGLTVSTDG 121 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~--V~-~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~-h~~~v~~i~~~~~~ 121 (434)
...+|++.++.++..+.+-..+ .. -+.|+-+. .++|-- ....++|+++ ++... ..+.. ....|....|+|.+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 4668888888999888877776 55 67788776 665544 3457999997 33221 11111 13568888899854
Q ss_pred C--eEEE-----eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-------------
Q 013873 122 R--ILVS-----CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA------------- 181 (434)
Q Consensus 122 ~--~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 181 (434)
+ .|+. .+.++.+++|.+..+..+ ....-....-..+.|++.|.+++.-
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l------------~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVL------------VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCee------------eeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 3 3442 467889999998754321 1111122233456777777766532
Q ss_pred CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE-EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL-ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
..+++|+++.....-... .-.++|...+|.|.+..+. ++|..+..+.++|++.. +..
T Consensus 254 esnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~------------------- 311 (561)
T COG5354 254 ESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRF------------------- 311 (561)
T ss_pred cceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc--eEE-------------------
Confidence 235888888743322222 4478999999999884433 33457888999998765 111
Q ss_pred ccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeee-EEeccCCccEEEEEEcCCCCEEEEee---
Q 013873 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSRE-IYHTKRMQRVFCVKFSCDASYVISGS--- 333 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~--- 333 (434)
....+.=+.+.|||.+++++.++-| |.|-+||........ .+.. ...+-+.|+||+.++.+..
T Consensus 312 -------~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 312 -------YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---LNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred -------ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---CCceEeeccCCceEEEecCCCc
Confidence 1234445567899999999998766 569999988765544 3333 2345678999999988754
Q ss_pred ---CCCcEEEeecCccc
Q 013873 334 ---DDTNLRLWKAKASE 347 (434)
Q Consensus 334 ---~dg~v~vw~~~~~~ 347 (434)
.|..+.|||+....
T Consensus 382 k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 382 KLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccccCcceEEEEecCch
Confidence 37889999987544
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.3e-10 Score=102.04 Aligned_cols=243 Identities=14% Similarity=0.283 Sum_probs=156.5
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-------CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
+..+.||++.|..++--.+. +-+++++.|.+|++|.+.. ..+..+++.|+.+|.++.|..+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 56778999999999876655 7899999999999999863 23566788999999999999998888765 78
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-C--CeEEEEeCCCCcceeeeec-----CC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-G--AQVDIWNHNRSQPINSFQW-----GT 203 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i~i~d~~~~~~~~~~~~-----~~ 203 (434)
-|++||.--+............. ....+.++.- -+..++.++ . .+++++|.+.......++. .+
T Consensus 805 giHlWDPFigr~Laq~~dapk~~-------a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEG-------AGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred cceeecccccchhHhhhcCcccC-------CCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 99999976555432211110000 0111222211 123333333 2 5799999998876655543 34
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
..+.+++..+.| +.++++-..|.|.+.|.+++..+.... .-......++ .|..
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswr-------------------------pmecdllqla-apsd 929 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWR-------------------------PMECDLLQLA-APSD 929 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCC-------------------------cccchhhhhc-Cchh
Confidence 568899999988 789999999999999999887554321 1111222222 3555
Q ss_pred CEEEEEeCCCcEEE-EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 284 REFVTGSYDRTIRI-FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 284 ~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+.|+....|.++.+ |..-.+.......... .+..- .-.-|.-|+++.....+.||.
T Consensus 930 q~L~~saldHslaVnWhaldgimh~q~kppp-epahf--lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGIMHLQDKPPP-EPAHF--LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCeeeeccCCCC-cchhh--hhccCceeEEeccCcEEEEEe
Confidence 67777778888888 8766654433322211 11110 111355577766666677774
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=5.7e-08 Score=88.47 Aligned_cols=249 Identities=9% Similarity=0.067 Sum_probs=148.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..+++++.+|.|..+|..+|+.+..+............ ++..++.++.+|.+..+|..+++.........
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------- 135 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-------- 135 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--------
Confidence 67888888999999999999988776543322222222 45678888899999999998887654322211
Q ss_pred EEecCceEEEeeccCCCEEEE-eCCeEEEEeCCCCcceeeeecCCCce-----EEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 160 YVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQWGTDTV-----ISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
.+.+.-...++.+++. .++.+..||..+++.+..+....... .+.... + ..++.+..+|.+..+|.
T Consensus 136 -----~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 136 -----EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred -----eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEc
Confidence 1111001113333333 34679999999998877665432211 111111 2 35667778888888888
Q ss_pred cCCCcceEE---------------------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 234 RMSSPARKV---------------------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 234 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
+++...... ......++.++.+|.......-.. .. ....... .++..+
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~--~~-~~~~~p~--~~~~~v 282 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR--DA-SSYQGPA--VDDNRL 282 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee--cc-CCccCce--EeCCEE
Confidence 766543221 111233445555555432111110 01 1111111 246778
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
++++.||.|..+|..+++.+............+... .+..|++++.+|.|+++|..+++.+..+.
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 888899999999999987665442211111222222 46688899999999999999999886654
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=7.8e-08 Score=83.44 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=108.1
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCC-cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDG-DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
-+|...|.-..+.-++ .-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++.+.....+.+.|++++
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 3688889999998887 6899999999 899999987764 445566789999999999999999998889999999888
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
... ..-.....-+..+.|+|++.++|.+- ..|+++|+..++....... ...=.+-+|.|++
T Consensus 434 nv~------------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ 500 (668)
T COG4946 434 NVR------------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDG 500 (668)
T ss_pred Cee------------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCC
Confidence 532 11222345688999999999999874 3599999988775543332 3344566788888
Q ss_pred Cc
Q 013873 216 PN 217 (434)
Q Consensus 216 ~~ 217 (434)
..
T Consensus 501 ry 502 (668)
T COG4946 501 RY 502 (668)
T ss_pred cE
Confidence 43
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=4.6e-10 Score=101.95 Aligned_cols=243 Identities=14% Similarity=0.286 Sum_probs=159.1
Q ss_pred CeEEEEeCCCC-CceEEeeeCCCcEEEEeCCCC---ceeEEeeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCC
Q 013873 68 GISCMAKNPNY-LKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 68 ~V~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
.|-.+.|+|.. ..+-++......-.+|++... .....+.+|..+|+.+.|+|. ...+++++.|-.+..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 56677788763 133344444455668997533 344567899999999999984 4589999999999999998764
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeCC-eEEEEeCCCC-cceeeeecCCCceEEEEEcCCCCcEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGA-QVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
. .......+......+.|+. ++..+++..| .+.+||++.+ .++..+++|...+..++|+..-...+
T Consensus 149 ~-----------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 149 R-----------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred c-----------ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh
Confidence 2 2334455666777788876 5566666654 6999999876 57788888888999999987665678
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC--EEEEEeCCCcEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR--EFVTGSYDRTIRI 297 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~--~l~~~~~d~~i~i 297 (434)
.+.+.||+|++||............ ....+|..-.+-|-|+ ++.---.+..+.+
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~v------------------------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTV------------------------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred cccCCCCceeeecccccccccceec------------------------cccCcceeccccccCceeEeccccCCeeeee
Confidence 8999999999999876543322211 2234455555555332 2221111223333
Q ss_pred ---------EeCCCC-eeeeEEeccCCccEEEEEEcCC----------CCEEEEeeCCCcEEEeecCcc
Q 013873 298 ---------FQYNGG-RSREIYHTKRMQRVFCVKFSCD----------ASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 298 ---------wd~~~~-~~~~~~~~~~~~~v~~~~~s~~----------~~~l~s~~~dg~v~vw~~~~~ 346 (434)
|+..++ .++..+.+ |...|....|-.. .-.|+|-+.|..+++|-+.+.
T Consensus 274 ~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 274 LRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccchhhhhccccCCcceeeecC-cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 333322 34444543 3355555555321 125999999999999998753
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=8.9e-08 Score=95.07 Aligned_cols=253 Identities=10% Similarity=0.147 Sum_probs=158.1
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEE----eCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLW----DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
...+.|.++.|.++. ..++.+..+|.|.+. +..+... .....-...|.+++||||+..|+..+.+|++.+..-.
T Consensus 73 ~~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 73 DPNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 345789999999997 788899999999999 5544332 2223346789999999999999999999998876421
Q ss_pred ----------C-------------CCCCCCCCCCCCC---------CCc---eeEEEecCceEEEeeccCCCEEEEeC--
Q 013873 140 ----------V-------------ATLTDSDDSTDNS---------SEP---LAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (434)
Q Consensus 140 ----------~-------------~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (434)
. |+....+...... ..+ .........-..++|-.||.++++..
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 0000111111000 000 01111455677899999999998764
Q ss_pred ---C---eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec---CCcEEEEEccCCCcceEEEeeecCceeEE
Q 013873 183 ---A---QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS---DRSITLYDLRMSSPARKVIMRANEDCNCY 253 (434)
Q Consensus 183 ---~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (434)
+ .+++|+-+ |........-.+--.+++|-|.| +++++... ...|.+|.-+. ..-..+.+
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l--------- 298 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNG-LRHGEFTL--------- 298 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCC-cEeeeEec---------
Confidence 3 38999865 44333333333334578999999 77776654 23344554221 11111110
Q ss_pred EeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--eeEEeccCCccEEEEEEcC-CCCEEE
Q 013873 254 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSC-DASYVI 330 (434)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~ 330 (434)
.+......|..+.|++|+..||..-.|. |.+|-..+-.. ...+.......+..+.|+| +...|.
T Consensus 299 ------------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 299 ------------RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred ------------CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 0113456789999999999999987655 99998876543 2333333334456699999 445566
Q ss_pred EeeCCCcEEEeec
Q 013873 331 SGSDDTNLRLWKA 343 (434)
Q Consensus 331 s~~~dg~v~vw~~ 343 (434)
..+.+|.+..+++
T Consensus 366 v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 366 VLTSNGQYEIYDF 378 (928)
T ss_pred EEecCCcEEEEEE
Confidence 6776677655443
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.9e-08 Score=86.99 Aligned_cols=212 Identities=18% Similarity=0.236 Sum_probs=138.0
Q ss_pred CCCCCeEEEEeCCCC-CceEEe-----eeCCCcEEEEeCCCCcee-----EEeeccCCCeeEEEEcCCCCeEE---EeeC
Q 013873 64 GHRDGISCMAKNPNY-LKGFFS-----GSMDGDIRLWDIANRRTV-----CQYSGHQGAVRGLTVSTDGRILV---SCGT 129 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~-~~~l~s-----g~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~~~~~~~l~---s~~~ 129 (434)
-|...|+.+.++|.+ ...+|+ ++.-+.|+||........ ++|. -.+.| .+.|++-|+-|+ +..-
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEee
Confidence 368899999999984 344443 455568999987632221 1221 11223 477887665322 2222
Q ss_pred C---------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC----eEEEEeCCCCcce
Q 013873 130 D---------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA----QVDIWNHNRSQPI 196 (434)
Q Consensus 130 d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~i~d~~~~~~~ 196 (434)
| .++++.+++. ..........++|.++.|++++.-++..-| .+.|||++ +.++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g-------------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v 306 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQG-------------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPV 306 (566)
T ss_pred cCCCccccccceEEEEEecC-------------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEe
Confidence 3 3567777652 244445556789999999999988877764 59999985 4455
Q ss_pred eeeecCCCceEEEEEcCCCCcEEEEEec---CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC
Q 013873 197 NSFQWGTDTVISVRFNPAEPNVLATTAS---DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA 273 (434)
Q Consensus 197 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (434)
..+ ..++-+++-|+|.| ++++.++- .|.+-+||+.+.+.+.++. ...
T Consensus 307 ~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---------------------------a~~ 356 (566)
T KOG2315|consen 307 FDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKFK---------------------------AAN 356 (566)
T ss_pred EeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhccccc---------------------------cCC
Confidence 444 35667889999999 66665554 4899999998866555431 233
Q ss_pred eEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 274 VMDIDYSPTGREFVTGSY------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
-+-+.|+|||.+|+|++. |+.++||++... .+...... +....+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~-~l~~~~f~--sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS-LLHEKMFK--SELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc-eeehhhhh--HhHhheeeee
Confidence 456899999999999875 678999998643 32222111 1356666665
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=9.4e-08 Score=87.05 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=124.1
Q ss_pred cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCe-EEEeeC---CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI-LVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
.|.+=|..... .+.+... +......|+|+|+. ++..+. +..|.++|+.+++ ..........
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-------------~~~lt~~~g~ 234 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-------------KEKIASSQGM 234 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-------------EEEEecCCCc
Confidence 45554543333 2323323 36778999999984 554333 3568888887663 2222233444
Q ss_pred eEEEeeccCCCEEEEe-C----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEccCCCc
Q 013873 166 FWAVDHQWEGDLFATA-G----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~ 238 (434)
.....|+|||..++.. + .+|.++|+.++... .+..+........|+|+|..++++....|. |.++|+.++..
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 5567899999866543 2 35899998777633 343333334456899999666666655553 55555544332
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeeeeEE
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---------RTIRIFQYNGGRSREIY 309 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~ 309 (434)
.+ + ...+. ....|||||++|+..+.. ..|.+.|+.++......
T Consensus 314 ~r-l-----------------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 314 EQ-V-----------------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred Ee-C-----------------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence 11 1 01111 124899999998776654 36888899888654333
Q ss_pred eccCCccEEEEEEcCCCCEEEEeeCC-C--cEEEeecCcc
Q 013873 310 HTKRMQRVFCVKFSCDASYVISGSDD-T--NLRLWKAKAS 346 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~v~vw~~~~~ 346 (434)
.. .......|+|||+.|+..+.+ | .+.+.++...
T Consensus 366 ~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 366 AN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 22 223358899999988765543 2 3556666543
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-08 Score=85.79 Aligned_cols=267 Identities=12% Similarity=0.081 Sum_probs=152.1
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEEee
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWN 137 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd 137 (434)
...+.+|...|..++|+|....++..++.+..|+|.|+++...+..+..+ ..+++++|.-+. .+++.|..+|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 33567888999999999997558899999999999999999988888877 799999998754 5788888899999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCC--cceeeeec-CCCceEEEEEcCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS--QPINSFQW-GTDTVISVRFNPA 214 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~-~~~~i~~i~~~~~ 214 (434)
++................++....+ +..-...+.|.+++...-.+..|..... .....+.. ..+...+++.++.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~---~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAP---VQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecc---cCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 9766432111111011111111111 0001233445555555555667765332 12222221 2456777888877
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEee-ecCceeEEEeeCCCC--ccceeeeeCcccCeEEEEEccCCCEEE-EEe
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR-ANEDCNCYSYDSRKL--DEAKCVHMGHESAVMDIDYSPTGREFV-TGS 290 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~ 290 (434)
..++|++.-.+ ...+..++.+. ........++..+.. +...+. -+... .+.-.++.++++ +++
T Consensus 342 snh~l~tyRs~---------pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k--l~t~~--ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 342 SNHLLLTYRSN---------PNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK--LSTTQ--AIRAVEDNNYIVVVGD 408 (463)
T ss_pred cceEEEEecCC---------CCCccceeeeeeeccccCceeeeecccccCCcccc--ccccc--ceeccccccEEEEecC
Confidence 66667665443 11111111111 000000000000000 000000 01111 112234555544 445
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-C-CCEEEEeeCCCcEEEeecCc
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-D-ASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~s~~~dg~v~vw~~~~ 345 (434)
..+.+.+||..+......+... .+|.+++... + +.||++-. |..++||..++
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CcceeEEeccchhheeeecccC--cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5678999999999888887655 6788887654 3 34666554 56889987654
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.5e-10 Score=107.21 Aligned_cols=218 Identities=15% Similarity=0.262 Sum_probs=152.4
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC--cEEEe
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLW 136 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~v~iw 136 (434)
.++|+.|+...+|++|+-+. +.|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+.-. -..+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 46788899999999999987 9999999999999999999999999999999999999999998777665433 46789
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc--CCCEEEEeCCeEEEEeCCCCcceeeeec----CCCceEEEE
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFATAGAQVDIWNHNRSQPINSFQW----GTDTVISVR 210 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~i~ 210 (434)
++.+. ..+...+ ..-.++.|+. ....+.+......+||+.++.++.++-. ..-.-++..
T Consensus 1173 ~~~s~------------~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1173 DASST------------GGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred ccccc------------cCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 98542 1111111 1122344443 3345556667799999999988776432 122336788
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
|+|.+ .+++ .|| .+||++..+.++.+- ..+..+ .=.|+|+|..++.-+
T Consensus 1238 FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD-------------------------~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDG--VLWDVRIPEAIHRFD-------------------------QFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred cCCCc-ceEe---eCc--eeeeeccHHHHhhhh-------------------------hheecc-cccccCCCceEEeec
Confidence 99988 4443 355 489999876655441 111111 125999999888876
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
.|||+++-+.+.....- .-..+.|+..|..++..
T Consensus 1286 -----EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 -----EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -----hhhhhHHHHHHhcCccc---cceEEEeccCccchhhh
Confidence 49999987766554332 23467788888766543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.5e-07 Score=85.70 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=113.9
Q ss_pred CeEEEEeCCCCCceEEeeeC---CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCC--CcEEEeeCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTD--CTVKLWNVPVA 141 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~d--g~v~iwd~~~~ 141 (434)
.+..-.|+|+|...++..+. +..|+++|+.+++...... ..+......|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 45678999998333554333 3569999998887654433 45566778899999877643 333 45777777655
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
... .............|+|||..++..+ + +|.++|+.+++......... . ...|+|+|.
T Consensus 268 ~~~-------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~ 331 (419)
T PRK04043 268 TLT-------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKN 331 (419)
T ss_pred cEE-------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCC
Confidence 321 1111111123457999997655443 2 58999998776533322211 1 248999996
Q ss_pred cEEEEEecC--------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 217 NVLATTASD--------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 217 ~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
.++++.... ..|.+.|+.++.. ..+ ... .......|+|||+.|+.
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~L-------------------------T~~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRL-------------------------TAN-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EEC-------------------------CCC-CCcCCeEECCCCCEEEE
Confidence 555555433 2455556544422 111 111 12234789999998776
Q ss_pred EeCCC---cEEEEeCCCCee
Q 013873 289 GSYDR---TIRIFQYNGGRS 305 (434)
Q Consensus 289 ~~~d~---~i~iwd~~~~~~ 305 (434)
.+.++ .+.+.++.....
T Consensus 385 ~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EEccCCcEEEEEEecCCCee
Confidence 65432 366777765443
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=1.6e-07 Score=76.57 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhh
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 358 (434)
....|..|..||||.+||+...+|.|.+|++.+-++.+.....++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 3478999999999999999999999999999999988877665544
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=8.4e-08 Score=77.09 Aligned_cols=230 Identities=11% Similarity=-0.005 Sum_probs=140.2
Q ss_pred eCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcC-----CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 86 SMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 86 ~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
+....+-+|++-+.. .+...+ .+.|-| ...+|+.||.-|...+|...+...... .
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~-----------~ 110 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY-----------Q 110 (344)
T ss_pred cceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCccccee-----------e
Confidence 445567788876543 222222 234443 445899999999999999876542111 1
Q ss_pred EEEecCceEE---EeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC
Q 013873 159 VYVWKNSFWA---VDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 159 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 235 (434)
...+...+.. .+-......+++.+.++++.++..+..-.......-...++++++++ .++++.+....|..|.+..
T Consensus 111 cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 111 CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCC
Confidence 1111111111 11111122334444556666655433222222112347889999988 7888888888999998875
Q ss_pred CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE----ec
Q 013873 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY----HT 311 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~ 311 (434)
......-. .....+..-.+..|+.....+|++..||++.|||++........ ..
T Consensus 190 ~sey~~~~----------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp 247 (344)
T KOG4532|consen 190 ESEYIENI----------------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP 247 (344)
T ss_pred ccceeeee----------------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC
Confidence 43221110 11123344567889999999999999999999999875543322 45
Q ss_pred cCCccEEEEEEcCCCC--EEEEeeCCCcEEEeecCcccccccCChhh
Q 013873 312 KRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 312 ~~~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
+|.+.+..+.|++.|. +|+..-.-+.+.+-|++++...+.+...+
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 5778999999998654 34444456789999999988776665433
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.2e-09 Score=96.62 Aligned_cols=246 Identities=15% Similarity=0.268 Sum_probs=158.6
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-ceeEEeeccC--CCeeEEEEcCCC--CeEEEeeCCCcEEEeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-RTVCQYSGHQ--GAVRGLTVSTDG--RILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~--~~v~~i~~~~~~--~~l~s~~~dg~v~iwd~~~ 140 (434)
.+.+.++..+|.| .-+|.++.-| +.+-|+... .+..-+. |. -.|-.+.|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 4678889999998 6777777766 566676643 3322222 32 246677887742 3444444444556788743
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.. ....-..+.+|...|+.+.|+|+.+.+++
T Consensus 101 ss-------------------------------------------------~~aIef~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 101 SS-------------------------------------------------SNAIEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred CC-------------------------------------------------ccceEEEEecCccceeccccCCCCCccee
Confidence 31 11112334567889999999999999999
Q ss_pred EEecCCcEEEEEccCCCcceEE-------------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 221 TTASDRSITLYDLRMSSPARKV-------------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
+++.|-.+..||++........ .+.......+++||.+....+.+...+|...|+.++|..
T Consensus 132 tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 9999999999999876432211 222556678899999999999999999999999999876
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC--EEEEeeCCCcEEE---------eecCc-ccc
Q 013873 282 -TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRL---------WKAKA-SEQ 348 (434)
Q Consensus 282 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~v~v---------w~~~~-~~~ 348 (434)
....+.+++.|++|++||................+|..-.+.|-|. ++.-.-.+..+.+ |+..+ .+.
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 3345889999999999998754433222222335666666666433 2221111223333 33322 234
Q ss_pred cccCChhhhhhhHHH
Q 013873 349 LGVLHPREQRKHAYH 363 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~ 363 (434)
+..|.++....+.+.
T Consensus 292 Vh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFL 306 (1081)
T ss_pred eeeecCcchHHHHHh
Confidence 566666666655543
No 290
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.5e-06 Score=73.28 Aligned_cols=221 Identities=19% Similarity=0.278 Sum_probs=141.5
Q ss_pred EEEEeCCCCCceEEeeeC-CCcEEEEeCCC-Ccee--EEeeccCCC----------eeEEEEcCCCCeEEEee--CCCcE
Q 013873 70 SCMAKNPNYLKGFFSGSM-DGDIRLWDIAN-RRTV--CQYSGHQGA----------VRGLTVSTDGRILVSCG--TDCTV 133 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~--~~~~~h~~~----------v~~i~~~~~~~~l~s~~--~dg~v 133 (434)
+.++++++| .+|+++.. .|.|.++-+.. |... ..+..|.+. +....+.|++++|++++ .| .|
T Consensus 92 ~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri 169 (346)
T COG2706 92 CYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RI 169 (346)
T ss_pred eEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eE
Confidence 789999998 77777654 58899999865 3321 122336655 88899999999999874 34 78
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCC-cceeeeec--------
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS-QPINSFQW-------- 201 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~-~~~~~~~~-------- 201 (434)
.+|++..+.+.... .........-.-+.|+|++++..... ++|.+|..+.. ..+..++.
T Consensus 170 ~~y~~~dg~L~~~~---------~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 170 FLYDLDDGKLTPAD---------PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred EEEEcccCcccccc---------ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 99999877654321 11123445667899999999877765 67888887763 22222221
Q ss_pred -CCCceEEEEEcCCCCcEEEEEe-cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 202 -GTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 202 -~~~~i~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
.......|..+++|. +|.++. ....|.+|.+........+. .....+......+.|
T Consensus 241 ~g~~~~aaIhis~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~---------------------~~~~teg~~PR~F~i 298 (346)
T COG2706 241 TGTNWAAAIHISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELV---------------------GITPTEGQFPRDFNI 298 (346)
T ss_pred CCCCceeEEEECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEE---------------------EEeccCCcCCcccee
Confidence 244677899999994 444332 33467777765443322221 112234445778999
Q ss_pred ccCCCEEEEEeCCC-cEEEEeCC--CCeeeeEEeccCCccEEEEEEc
Q 013873 280 SPTGREFVTGSYDR-TIRIFQYN--GGRSREIYHTKRMQRVFCVKFS 323 (434)
Q Consensus 280 sp~~~~l~~~~~d~-~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s 323 (434)
+|.|++|++++.++ .|.+|..+ +|++.............||.|.
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 99999998888654 58888654 5555444332333445567664
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=3.9e-07 Score=90.62 Aligned_cols=272 Identities=14% Similarity=0.190 Sum_probs=167.4
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeC---C---CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC---CC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSM---D---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DC 131 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~---d---g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg 131 (434)
.+. +.+.-..++|-.|| .+||+.+. . ..++||+-+ |....+-..-.+--.+++|.|.|+++|+... ..
T Consensus 205 ~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred ccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 445 67788899999999 99998765 3 469999954 6554444433444457899999999998754 34
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEEEeCCCCcce--eeeecC-CCceE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQPI--NSFQWG-TDTVI 207 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~--~~~~~~-~~~i~ 207 (434)
.|.+|.-+..+. ..+ ..........+..+.|++++.+|+..-. .|.+|-..+..-. ..+... ...+.
T Consensus 282 ~VvFfErNGLrh-geF--------~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 282 DVVFFERNGLRH-GEF--------TLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEEEEecCCcEe-eeE--------ecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 566666332211 000 0000122446789999999999998764 5999988765422 222221 23455
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC----------CCcccee-eeeCcccCeEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR----------KLDEAKC-VHMGHESAVMD 276 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~i~~ 276 (434)
.+.|+|..+..|...+.+|.+..+++.-...... .......+.+.+.|.. ....+.. ....-..+|.+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~-~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP-GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC-CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 6999999888898888888887766532111000 0001112223333322 2222221 11234678999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeee--------eEEec---------cCCccEEEEEEcCCCCEEEEeeCC---C
Q 013873 277 IDYSPTGREFVTGSYDRTIRIFQYNGGRSR--------EIYHT---------KRMQRVFCVKFSCDASYVISGSDD---T 336 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~---------~~~~~v~~~~~s~~~~~l~s~~~d---g 336 (434)
++|++++..+++-..||.|.+|........ ..+.. .....+..++|..+..+++....+ +
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQS 511 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccc
Confidence 999999988999999999999985443211 11110 112457888898877766665544 6
Q ss_pred cEEEeecCc
Q 013873 337 NLRLWKAKA 345 (434)
Q Consensus 337 ~v~vw~~~~ 345 (434)
.+.++++..
T Consensus 512 ~i~~~~~~~ 520 (928)
T PF04762_consen 512 KIVLVDIDD 520 (928)
T ss_pred eEEEEEecc
Confidence 788887743
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=9.4e-07 Score=77.28 Aligned_cols=234 Identities=11% Similarity=0.035 Sum_probs=140.0
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC----------CCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT----------DCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
|+|.+.|..+++.+..+..-..+- .+ ++|+++.|+++.. +..|.+||..+.+..........+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence 899999999999988887433333 34 9999998887765 789999999988765444332111000
Q ss_pred EEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
....-..++++|+|++++..+ ..+.+.|+.+++.+..+.... ...-...+... +.+.+.||......+.
T Consensus 103 ---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~---~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 103 ---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT---FFMHCRDGSLAKVGYG 175 (352)
T ss_pred ---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc---cEEEeecCceEEEEec
Confidence 112234678999999888654 459999999999888877532 22222222211 2233456655554443
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe-----eeeE
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGR-----SREI 308 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~-----~~~~ 308 (434)
......... ..+++... . . -...+ .|++ +|++++.... |.|.+.|+.... ....
T Consensus 176 ~~g~~~~~~--------~~vf~~~~--~---~--v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 176 TKGNPKIKP--------TEVFHPED--E---Y--LINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CCCceEEee--------eeeecCCc--c---c--cccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 322211000 00000000 0 0 00112 3455 8888877776 999999964432 2222
Q ss_pred Eecc------CCccEEEEEEcCCCCEEEEee----------CCCcEEEeecCcccccccCC
Q 013873 309 YHTK------RMQRVFCVKFSCDASYVISGS----------DDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 309 ~~~~------~~~~v~~~~~s~~~~~l~s~~----------~dg~v~vw~~~~~~~~~~~~ 353 (434)
+... ..+.+.-++++++++.+++.. ..+.|.++|..+++.+..+.
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 2111 223445599999999888743 12479999999999887664
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=3e-07 Score=93.12 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=133.8
Q ss_pred CeEEEEeCCCCCceEEee-eCCCcEEEEeCCCCceeEEeecc-----------------CCCeeEEEEcC-CCCeEEEee
Q 013873 68 GISCMAKNPNYLKGFFSG-SMDGDIRLWDIANRRTVCQYSGH-----------------QGAVRGLTVST-DGRILVSCG 128 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h-----------------~~~v~~i~~~~-~~~~l~s~~ 128 (434)
.-..+++++++ +.|+.+ ..++.|+++|+.++. +.++.+- -..-..++|+| ++..+++.+
T Consensus 625 ~P~GIavd~~g-n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 625 RPQGLAYNAKK-NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCcEEEEeCCC-CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 35778898887 555444 445789999987754 3333210 01235789999 566667777
Q ss_pred CCCcEEEeeCCCCCCCCCCCCC--CCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeee----
Q 013873 129 TDCTVKLWNVPVATLTDSDDST--DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSF---- 199 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~---- 199 (434)
.++.|++||..++......... ..................++++|++..++.++ +.|++||+.++......
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 8899999998766432110000 00000000001123446789999988444433 46999998876432111
Q ss_pred ---------ecC--------CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 200 ---------QWG--------TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 200 ---------~~~--------~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
... -.....++++++| .++++-+.++.|++||..+..... +...+. .+. -|. .
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~t-iaG~G~-~G~---~dG----~ 852 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTT-LAGTGK-AGF---KDG----K 852 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEE-EeccCC-cCC---CCC----c
Confidence 000 0124588899988 688888899999999987654332 111110 000 000 0
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 305 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 305 (434)
...+.-.....++++++|+.+++-+.++.|++||+.++..
T Consensus 853 ---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0112334577899999999999888999999999988764
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=5.3e-07 Score=82.15 Aligned_cols=244 Identities=12% Similarity=0.090 Sum_probs=136.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..++.++.+|.+..+|..+|+.+...... +.+.+.-.. .+..++.++.+|.|..||..+++........... ...
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---LTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---eee
Confidence 56778888999999999999988765532 222211111 2456777788999999999888664433221110 000
Q ss_pred EEecCceEEEeeccCCCEEEE-eCCeEEEEeCCCCcceeeeecCCC----c------e-EEEEEcCCCCcEEEEEecCCc
Q 013873 160 YVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQWGTD----T------V-ISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~----~------i-~~i~~~~~~~~~l~~~~~dg~ 227 (434)
.....+ ... ++.+++. .++.+..+|..+++.+........ . + .+..+. + ..+++++.+|.
T Consensus 181 ~~~~sp----~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~ 252 (377)
T TIGR03300 181 RGSASP----VIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQGR 252 (377)
T ss_pred cCCCCC----EEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcCCE
Confidence 000000 111 2333332 236788889888876654332100 0 0 011111 3 45667788899
Q ss_pred EEEEEccCCCcceEE--------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 228 ITLYDLRMSSPARKV--------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 228 i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
+..||..+++..... ......++.++.+|.......-............... .+..+++++.+|
T Consensus 253 l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 253 VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCC
Confidence 999998776433322 2223445566666654332111110000111111122 467889999999
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEE-EEEEcCCCCEEEEeeCCCcEEEe
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
.|+++|..+++.+..+..+. ..+. +..+. ++ .|+.++.||.|+.|
T Consensus 331 ~l~~~d~~tG~~~~~~~~~~-~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKTDG-SGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEcCC-CccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 99999999999887775543 2222 22222 33 47788899999876
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.94 E-value=1.1e-06 Score=74.88 Aligned_cols=196 Identities=12% Similarity=0.135 Sum_probs=126.5
Q ss_pred EEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeec-cCCCEEEEeCCeEEEEeCC
Q 013873 114 GLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATAGAQVDIWNHN 191 (434)
Q Consensus 114 ~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~ 191 (434)
++.|.+ ++.++++--..+.|..|+..++.. ....... ...+.+. +++.++++..+.+.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEecCC-CceEEEEccCCEEEEEEcCceEEEecC
Confidence 567887 666666666789999999875532 1122222 5566666 7888888888888888998
Q ss_pred CCcceeeeec-----CCCceEEEEEcCCCCcEEEEEecC--------CcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 192 RSQPINSFQW-----GTDTVISVRFNPAEPNVLATTASD--------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 192 ~~~~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
+++....... .....+.+++.|+| ++.++.... |.|..++.. .+ ...
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~----------------- 128 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTV----------------- 128 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEE-----------------
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEE-----------------
Confidence 8854433332 34567889999988 566655433 334444443 11 111
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCee----eeEE-eccC-CccEEEEEEcCCCCEEEE
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFV-TGSYDRTIRIFQYNGGRS----REIY-HTKR-MQRVFCVKFSCDASYVIS 331 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~-~~~~-~~~v~~~~~s~~~~~l~s 331 (434)
....-...+.|+|+|+++.|+ +-+..+.|..|++..... ...+ .... .+..-.++++.+|++.++
T Consensus 129 --------~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 129 --------VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp --------EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred --------EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 112244578999999999765 556678899999863322 1222 2222 124778999999998888
Q ss_pred eeCCCcEEEeecCcccccccCC
Q 013873 332 GSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 332 ~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
....+.|.+++.+ |+.+..+.
T Consensus 201 ~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 201 DWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EETTTEEEEEETT-SCEEEEEE
T ss_pred EcCCCEEEEECCC-ccEEEEEc
Confidence 7788999999988 87776554
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=1.7e-06 Score=73.01 Aligned_cols=235 Identities=10% Similarity=0.068 Sum_probs=142.2
Q ss_pred CeEEEEeCCCCCceEEeeeCCCc-EEEEeCCCCceeEEeeccCCCee--EEEEcCCCCeEEEeeC-----CCcEEEeeCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGD-IRLWDIANRRTVCQYSGHQGAVR--GLTVSTDGRILVSCGT-----DCTVKLWNVP 139 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~l~s~~~-----dg~v~iwd~~ 139 (434)
..-.++.+|..+..++.+-.-|+ ..+||..+++....+....+.-. .-.|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 34467888966577788877775 77899999988776643222211 2579999999998643 5899999997
Q ss_pred CCCCCCCCCCCCCCCCceeEE-EecCceEEEeeccCCCEEEEeCC--------------------eEEEEeCCCCcceee
Q 013873 140 VATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAGA--------------------QVDIWNHNRSQPINS 198 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~i~i~d~~~~~~~~~ 198 (434)
.. + ..+..+ .+.-.-..+.+.|+|..|+.+.| .+.+.|..+++.+..
T Consensus 86 ~~-~-----------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 86 RG-Y-----------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred CC-c-----------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 22 1 111111 11223345667888866655432 255566777777766
Q ss_pred ee----cCCCceEEEEEcCCCCcEEEEEecCCc-------EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 199 FQ----WGTDTVISVRFNPAEPNVLATTASDRS-------ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 199 ~~----~~~~~i~~i~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
.. .|...|..+++.++| ..++..-..|. |.+++.. .. +..+.. .....
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g--~~-------------~~~~~~-----p~~~~ 212 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG--GA-------------LRLLPA-----PEEQW 212 (305)
T ss_pred eecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC--Cc-------------ceeccC-----ChHHH
Confidence 33 266678888888877 34333322221 1111111 10 000000 00011
Q ss_pred eCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE
Q 013873 268 MGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v 340 (434)
..-.+.+-+|+++++|.++++. -..+.+.+||..++..+..... ..+..++-.+++ ++++.+ .|.+..
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l---~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL---PDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc---CceeeeeecCCc-eEEeCC-CccEEE
Confidence 2345688999999999877554 4677899999999987766544 456778877777 666554 454433
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=7.1e-07 Score=75.70 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=132.9
Q ss_pred CCCcEEEEeCCCCceeEEeeccCCCeeEEE--EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC
Q 013873 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLT--VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (434)
.+|+|..||..+|+.+..... ........ ..+++..+++++.++.|..||..+++....... ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-------------~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-------------PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-------------SS
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-------------cc
Confidence 368999999999999888753 11122222 233566788888999999999988865332222 11
Q ss_pred ceEEEeeccCCCEE-EEeCCeEEEEeCCCCcceeee-ecCC---CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 165 SFWAVDHQWEGDLF-ATAGAQVDIWNHNRSQPINSF-QWGT---DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 165 ~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~~~~~-~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
.+.......++.++ ++.++.+..+|..+++.+... .... ...........+ ..++++..++.|..+|+.+++..
T Consensus 67 ~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 67 PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEE
T ss_pred cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEE
Confidence 11110122233333 344578999999999988874 3221 111222222224 56777888999999999988776
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
........... .. . .....+..-....++ .++.++.++.+.-+|+.+++...... . ..+..
T Consensus 146 w~~~~~~~~~~-----------~~---~-~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~--~~~~~ 206 (238)
T PF13360_consen 146 WKYPVGEPRGS-----------SP---I-SSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I--SGIYS 206 (238)
T ss_dssp EEEESSTT-SS----------------E-EEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S--S-ECE
T ss_pred EEeecCCCCCC-----------cc---e-eeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C--CCccC
Confidence 65532110000 00 0 001112222222244 67777777754444999998653222 1 33333
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
+ ...++..|+.++.+|.|..||+.+++.+
T Consensus 207 ~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 207 L-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp C-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred C-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 2 3457778888889999999999999865
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=4.1e-07 Score=79.10 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=133.1
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC--CCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCc
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS--SEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQ 194 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~ 194 (434)
+.||+.++. +..|.|.+||..+..+.......... ...........-....+.. +|.+++..+ |...|.+...+-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCe
Confidence 346776665 45688999998776654322211100 0000000000001112222 556665555 777777765554
Q ss_pred ceeeeecCCCceEEEEEcCCCCcEEEEEecCC-cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC
Q 013873 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA 273 (434)
Q Consensus 195 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (434)
.+.. ++...|.-..+..+. .-++.|..|| .+-+||.+++..... .+.-+.
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~--------------------------e~~lg~ 403 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRI--------------------------EKDLGN 403 (668)
T ss_pred eEEc--CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEe--------------------------eCCccc
Confidence 4432 234557766666655 4688899999 899999987654332 245678
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC----cEEEeecCccccc
Q 013873 274 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT----NLRLWKAKASEQL 349 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~v~vw~~~~~~~~ 349 (434)
|.++..+|+|++++.+.....|.+.|+.++.....- ....+-|+.++|+|+++++|-+--+| .|+++|+..++..
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 999999999999999999999999999999865443 34447899999999999999877655 5899999987765
Q ss_pred cc
Q 013873 350 GV 351 (434)
Q Consensus 350 ~~ 351 (434)
..
T Consensus 483 ~v 484 (668)
T COG4946 483 DV 484 (668)
T ss_pred Ee
Confidence 43
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=2.4e-09 Score=61.69 Aligned_cols=38 Identities=37% Similarity=0.658 Sum_probs=35.7
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD 95 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd 95 (434)
.++.++.+|.+.|++++|+|++ .+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4577899999999999999998 9999999999999997
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=6e-09 Score=59.98 Aligned_cols=39 Identities=28% Similarity=0.654 Sum_probs=36.7
Q ss_pred CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 99 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
++++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.85 E-value=3.6e-06 Score=81.80 Aligned_cols=214 Identities=11% Similarity=0.124 Sum_probs=133.8
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC----C
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP----V 140 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~----~ 140 (434)
..+.|.++.|.-+. ..++.+..+|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-... .
T Consensus 67 gd~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADT-NSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CCcceEEEEEeccc-ceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 34789999999998 88888899999999988776543 223356789999999999999998888888765431 1
Q ss_pred CCCCC-------------------CCCCCCCC---------CCceeEEEecCceEEEeeccCCCEEEEe-----CC--eE
Q 013873 141 ATLTD-------------------SDDSTDNS---------SEPLAVYVWKNSFWAVDHQWEGDLFATA-----GA--QV 185 (434)
Q Consensus 141 ~~~~~-------------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~i 185 (434)
.+... .+...... ..........+.-..+.|-.||.++++. .+ .+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 10000 00000000 0000000123344568999999999883 23 59
Q ss_pred EEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe---cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA---SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
++||-+ +..-..-....+.-.+++|-|.| .++++-. +|+.|.+|.-+...-. .+.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg-~f~------------------- 282 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG-EFV------------------- 282 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc-ccc-------------------
Confidence 999987 43322222223445689999988 6666643 3556777765432111 110
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEE---EeCCCcEEEEeCCCCe
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVT---GSYDRTIRIFQYNGGR 304 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~---~~~d~~i~iwd~~~~~ 304 (434)
..+......+..++|+.++..|++ ......|++|-+.+-.
T Consensus 283 --l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 283 --LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred --cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 011122334899999999999888 5555559999887644
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=84.50 Aligned_cols=147 Identities=16% Similarity=0.262 Sum_probs=107.6
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA 263 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
.+.+-|+.++... .|. ..+.|.++.|...+ +++..|...|.|..+|++....-.. ..
T Consensus 235 qv~L~nvetg~~q-sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~--------------------~~ 291 (425)
T KOG2695|consen 235 QVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNG--------------------WC 291 (425)
T ss_pred eeEEEEeeccccc-ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCC--------------------cc
Confidence 4888888776432 233 36778899998877 7999999999999999987622110 00
Q ss_pred eeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCee---eeEEeccCCc-cEEEEEEcCCCCEEEEeeCCCcE
Q 013873 264 KCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRS---REIYHTKRMQ-RVFCVKFSCDASYVISGSDDTNL 338 (434)
Q Consensus 264 ~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v 338 (434)
....-|...|+++..-. ++++|++.+.+|+|.+||++.-++ +..+.+|-.. .-.-+-..+....++++++|...
T Consensus 292 -a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 292 -AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred -eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 01124888899988766 788999999999999999987666 5555544211 11223346677789999999999
Q ss_pred EEeecCcccccccCCh
Q 013873 339 RLWKAKASEQLGVLHP 354 (434)
Q Consensus 339 ~vw~~~~~~~~~~~~~ 354 (434)
+||.+.++.++.++..
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 9999999999988754
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=8.1e-08 Score=76.85 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=116.5
Q ss_pred ceEEeeeCCCcEEEEeCCCCce-eEEeeccCCCeeEEEEcCCCCeEEEeeC-----CCcEEEeeCCCCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTDGRILVSCGT-----DCTVKLWNVPVATLTDSDDSTDNS 153 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~ 153 (434)
+.++++..||.+.+++.+.... ...+..-...-.+.++...++.+.+++. -+..++|+++.....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~--------- 172 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL--------- 172 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc---------
Confidence 6699999999999999765211 1111111112223334444555554322 234555665433211
Q ss_pred CCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCc-ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQ-PINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
.........+.+++-+|....++.++ |.+-+||.+... +...+..|+..+..+.|+|..+..|++++.||.+.
T Consensus 173 ---~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 173 ---IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ---cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 11111123377888888766555443 569999998763 45567789999999999999999999999999999
Q ss_pred EEEccCCCcceEEEeeecCceeEEEeeCCCCcc----ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE----AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
.||..+. +.........+..|=....-. ...++......|+++.. -|..|++|+.-+.|++++
T Consensus 250 ~wdas~~-----~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTT-----FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCc-----eEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 9998752 111111111122221111111 11111222334555444 577899999888888875
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.82 E-value=2.1e-07 Score=87.21 Aligned_cols=177 Identities=12% Similarity=0.169 Sum_probs=117.5
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeee
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ 200 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~ 200 (434)
.++.|+....+..+|+++.+....... ....+.. ...+++.+.+|+ |+|.+-|.++.+.+.++.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v------------~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNV------------SASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeec------------cCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeee
Confidence 456666666777777766543211111 0111111 223556666665 678888889999999999
Q ss_pred cCCCceEEEEEcCCCCcEEEEEec---------CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 201 WGTDTVISVRFNPAEPNVLATTAS---------DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
.|.+.|..+... | ++|++++. |..|++||+|....+..+. -+.
T Consensus 215 aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-------------------------~~~ 266 (1118)
T KOG1275|consen 215 AHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-------------------------FPY 266 (1118)
T ss_pred ccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcc-------------------------ccc
Confidence 999999887765 5 77888775 4557889988765544331 111
Q ss_pred cCeEEEEEccC-CCEEEEEeCCCcEEEEe---CCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 272 SAVMDIDYSPT-GREFVTGSYDRTIRIFQ---YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 272 ~~i~~~~~sp~-~~~l~~~~~d~~i~iwd---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+ ..-+.|+|. ...+++++..|...+-| +.+............+.+..+++++++..|+.|..+|.|.+|.
T Consensus 267 ~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 G-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred C-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 244677774 34678888899999998 3333222222233335599999999999999999999999997
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=5.5e-07 Score=82.32 Aligned_cols=224 Identities=11% Similarity=0.153 Sum_probs=148.2
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCC---CCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS---TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (434)
.....|+.|+.+..++++||.||.+++..+.+......... ...-......-.|...+..+.|+.+...+.+++ |
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999998876543322222 111122334455677889999999988888887 5
Q ss_pred eEEEEeCCCCcceeeeec--CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce-----------------EEEe
Q 013873 184 QVDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR-----------------KVIM 244 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~ 244 (434)
-|.+|-+-.+.-...+.. ..+.|.+++|+.+| ..++....||.|.+=.+..+..-. ...+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 599999877765443332 35678899999988 566677777776654444322111 1122
Q ss_pred eecCceeEEEeeCCCCccce----e------eeeCcccCeEEEEEc--------cCCCEEEEEeCCCcEEEEeCCCCeee
Q 013873 245 RANEDCNCYSYDSRKLDEAK----C------VHMGHESAVMDIDYS--------PTGREFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~i~~~~~s--------p~~~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
.....+.+.+||....-..+ + .+......|..+.|. |+...|+.+-.+|.+.+..-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 24455667777765431110 0 111122235555553 46778999999999998876655555
Q ss_pred eEEeccCCccEEEEEEcCCCCEEEEeeCC
Q 013873 307 EIYHTKRMQRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 307 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 335 (434)
..+..+ ..+....|+++|.+|+.++.|
T Consensus 253 vv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eEEecc--cEeecceecCCCcEEEEccCc
Confidence 555555 678999999999999998864
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=5.8e-08 Score=79.65 Aligned_cols=228 Identities=13% Similarity=0.240 Sum_probs=137.4
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC-----CCCCCCCCCCCCceeEEEecCceEEEeeccCCC---E-E
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL-----TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---L-F 178 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 178 (434)
....|+++.|...|.||++|...|.|.+|.-+.... ...+......-.-.........+..+.|..++. + +
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346789999999999999999999999997544321 111222222222222333344566666665442 3 3
Q ss_pred EEeCCeEEEEeCCCC-------------------cce-----------------------eee-ecCCCceEEEEEcCCC
Q 013873 179 ATAGAQVDIWNHNRS-------------------QPI-----------------------NSF-QWGTDTVISVRFNPAE 215 (434)
Q Consensus 179 ~~~~~~i~i~d~~~~-------------------~~~-----------------------~~~-~~~~~~i~~i~~~~~~ 215 (434)
.+.+.+|.+|-+... .++ ..+ ..|.-.|.++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 344467999976432 000 001 2244567888888876
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCCc
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~ 294 (434)
..++ ...|=.|.+|++........+. |... .-+..-...|++..|+|. .+.+...+..|.
T Consensus 185 -et~l-SaDdLrINLWnl~i~D~sFnIV------------DiKP-----~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 185 -ETLL-SADDLRINLWNLEIIDGSFNIV------------DIKP-----HNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred -heee-eccceeeeeccccccCCceEEE------------eccC-----ccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 3443 4567789999887554333221 1100 000112346788899994 456777778999
Q ss_pred EEEEeCCCCeeee----E-----------EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc-cccccCChh
Q 013873 295 IRIFQYNGGRSRE----I-----------YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS-EQLGVLHPR 355 (434)
Q Consensus 295 i~iwd~~~~~~~~----~-----------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~ 355 (434)
|++-|++...+.. . +...-...|..+.|+++|+++++-+. -+|++||++.. .++.++.-+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 9999998432211 0 01112356889999999999998765 48999999754 456555433
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.1e-07 Score=86.13 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=128.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.+.++|++++. ..|+-|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-- 105 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-- 105 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence 56788888875 6799999999999999754 33 333345544 66899999999999999988755421
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCC----CCcEEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA----EPNVLAT 221 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~~~l~~ 221 (434)
..++. ...++.+++++|+ ....+++
T Consensus 106 --------------------------------------------------~~~~d-f~rpiksial~Pd~~~~~sk~fv~ 134 (846)
T KOG2066|consen 106 --------------------------------------------------ITQYD-FKRPIKSIALHPDFSRQQSKQFVS 134 (846)
T ss_pred --------------------------------------------------ceeEe-cCCcceeEEeccchhhhhhhheee
Confidence 11111 1456788888886 2357889
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
|+.-| +.++.-+-....... ......++|.++.| .|+++|-++.+| |+|||+.
T Consensus 135 GG~ag-lvL~er~wlgnk~~v-----------------------~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 135 GGMAG-LVLSERNWLGNKDSV-----------------------VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred cCcce-EEEehhhhhcCccce-----------------------eeecCccceEEEEe--cCcEEEEecCCC-cEEEecc
Confidence 99888 777654322211111 23456789999999 678999998777 8999999
Q ss_pred CCeeeeEEeccCCc-----cEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 302 GGRSREIYHTKRMQ-----RVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 302 ~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+++.+..+...+.. --..+.|.++.++++- ..-+|+|..+.
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG--W~d~v~i~~I~ 233 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG--WGDSVKICSIK 233 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCeEEEe--cCCeEEEEEEe
Confidence 88877666444311 2346889887765553 33378888887
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.5e-06 Score=79.85 Aligned_cols=209 Identities=14% Similarity=0.221 Sum_probs=132.9
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC-eeEEEEcCCCCeEEEeeCCCc-----EEEeeCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-VRGLTVSTDGRILVSCGTDCT-----VKLWNVPVA 141 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~~~dg~-----v~iwd~~~~ 141 (434)
.|+| |++.+ ..++.|+.+|.|.+++ .+-+.++.++.+... |..+.......+|++.+.|+. |+||+++..
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 55666 7899999999998887 344555778888777 554444444468888777654 899999765
Q ss_pred CCCCCCCCCCCCCCce---eEEE-----ecCceEEEeeccCCCEEEEeC--CeEEEEe--CC--CCcceeeeecCCCceE
Q 013873 142 TLTDSDDSTDNSSEPL---AVYV-----WKNSFWAVDHQWEGDLFATAG--AQVDIWN--HN--RSQPINSFQWGTDTVI 207 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~i~i~d--~~--~~~~~~~~~~~~~~i~ 207 (434)
....+ ..+. .... ...++.+++++.+-..+++|= |.|..+. +. .+....-.....++|+
T Consensus 103 ~~n~s-------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 103 DKNNS-------PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred CCCCC-------cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 42211 1222 1122 134677888888877777763 5566653 21 1222222233467999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
.+.+..++...+.++ ....|.+|.+....+.. .....|...++|..+++....|+
T Consensus 176 gL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~p~~------------------------~~ld~~G~~lnCss~~~~t~qfI 230 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVA-TTEQVMLYSLSGRTPSL------------------------KVLDNNGISLNCSSFSDGTYQFI 230 (933)
T ss_pred eeEEecCCceeEEEE-ecceeEEEEecCCCcce------------------------eeeccCCccceeeecCCCCccEE
Confidence 999998885533333 34578888887443222 23456788899999987655566
Q ss_pred EEeCCCcEEEEeCCCCeeeeEEeccC
Q 013873 288 TGSYDRTIRIFQYNGGRSREIYHTKR 313 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~~~~~~~~~~~ 313 (434)
+++ +..+.+||.........+..++
T Consensus 231 ca~-~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 231 CAG-SEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred Eec-CceEEEEcCCCcceeeeecCCC
Confidence 666 4569999998777666665343
No 309
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=7.7e-08 Score=96.21 Aligned_cols=167 Identities=14% Similarity=0.219 Sum_probs=129.2
Q ss_pred EEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 235 (434)
....-..+.++.-+|...+.++++ |.+++|....++.+..++. ....++.+.|+.+| +.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-
Confidence 334455778888888888888887 5699999999988877754 34789999999988 788889999999999986
Q ss_pred CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeeeeEEecc
Q 013873 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
..+. ...+.|.....++.|-. ..+++++ .++.+.+||..-.......+..
T Consensus 2282 pk~~-------------------------~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2282 PKPY-------------------------TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred Ccce-------------------------eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence 1111 12246777778887754 5666664 4678999997654444444566
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
|.+.++++++.|...+|++||.+|.|++||+.-.+++..+..
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 778999999999999999999999999999998888776654
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=5.8e-08 Score=80.79 Aligned_cols=169 Identities=13% Similarity=0.142 Sum_probs=113.8
Q ss_pred EeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe
Q 013873 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW 162 (434)
Q Consensus 83 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (434)
++.+.+-.|-+-|++++-. ..|. ..+.|.++.|...+++++.|..+|.|...|++....
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq------------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ------------------- 286 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-------------------
Confidence 4445566788888877643 2333 567888889988888999999999999999875511
Q ss_pred cCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE
Q 013873 163 KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 242 (434)
-.+.+...+ .|.+.|+++.........|++.+.+|.|++||++..+....
T Consensus 287 ----------------------------G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~- 336 (425)
T KOG2695|consen 287 ----------------------------GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS- 336 (425)
T ss_pred ----------------------------CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc-
Confidence 011111222 25777888887764447888999999999999987655221
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEE--EEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC---CccE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD--IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR---MQRV 317 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v 317 (434)
+..+.+|.+.-.- +...+....++++|.|...+||.++.+.++....... ...+
T Consensus 337 ---------------------V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~ 395 (425)
T KOG2695|consen 337 ---------------------VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDI 395 (425)
T ss_pred ---------------------eeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccc
Confidence 1233466543222 3345566788999999999999999999887764332 1245
Q ss_pred EEEEEc
Q 013873 318 FCVKFS 323 (434)
Q Consensus 318 ~~~~~s 323 (434)
.+++|.
T Consensus 396 ~sv~~~ 401 (425)
T KOG2695|consen 396 PSVAFD 401 (425)
T ss_pred cceehh
Confidence 556664
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1e-07 Score=82.16 Aligned_cols=196 Identities=13% Similarity=0.164 Sum_probs=136.5
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEE
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 187 (434)
|...|+.+.-. -.+++++++.||.++.|.-.....
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-------------------------------------------- 42 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-------------------------------------------- 42 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--------------------------------------------
Confidence 77777776544 456999999999999998532100
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec-CCcEEEEEccCC----------------------CcceEEEe
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLRMS----------------------SPARKVIM 244 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~----------------------~~~~~~~~ 244 (434)
-+.+..+..|...|.+++.+-++ .++.+.+. |..++++|+.+. .....+.+
T Consensus 43 -----vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAV 116 (558)
T KOG0882|consen 43 -----VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAV 116 (558)
T ss_pred -----eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEe
Confidence 01133344555666666666666 56666555 777777665432 22334445
Q ss_pred eecCceeEEEeeCCCCc-cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CeeeeEE--------
Q 013873 245 RANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG------GRSREIY-------- 309 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------~~~~~~~-------- 309 (434)
....++.+.++|..... +......-|..+|.++.++|-+..+++....|.|.-|.... .+....+
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG 196 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhc
Confidence 56667777777777655 34444557999999999999999999999999999998763 1111000
Q ss_pred eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 310 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
........+++.|+|+|..+.+-+.|..|+++.+.+++.++.+..
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 112235678999999999999999999999999999999887753
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=3.3e-07 Score=85.96 Aligned_cols=153 Identities=18% Similarity=0.340 Sum_probs=110.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..|++|...|+|.+-|..+.+.++++..|++.|.++.. .|+.|++||..+...-..
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~---------------------- 243 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLA---------------------- 243 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccc----------------------
Confidence 67888999999999999999999999999998876555 577888888654321111
Q ss_pred EEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 160 YVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
.+.-|.+||++..+.+..+..+.++ .-+.|+|.-...+++++..|...+-|..+....
T Consensus 244 ---------------------~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 244 ---------------------MDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ---------------------ccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 1223667777776666666555443 557788887788999999999999984433221
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
.. ...........+..+++|++|+.++.|..+|.|.+|-
T Consensus 302 ~~---------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PA---------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cc---------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 10 0011123344599999999999999999999999997
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.71 E-value=0.00021 Score=64.83 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=64.8
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
......|.+++++|+...|+.|+.||.|.+||...+..... . ..-..+.++|+|+|.++++|+..|.+.+||+.-+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e-ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 36788999999999999999999999999999987644332 1 12457899999999999999999999999987543
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.3e-08 Score=94.66 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=144.8
Q ss_pred ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE
Q 013873 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+...+|..|+...+|++|+.+.+.|+.|+..|.|+++++.++.. ......|...++.+..+.+|...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------EESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------cccccccccccccccccCCcceee
Confidence 34556778899999999999999999999999999999999853 444556677888888888998877
Q ss_pred EeCC----eEEEEeCCC-CcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 180 TAGA----QVDIWNHNR-SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 180 ~~~~----~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
+.+. ...+|+... +.+..+|.. -.++.|+... ..-+.|.......+||+.+..+..++....
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-------- 1226 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDT-------- 1226 (1516)
T ss_pred eeccccCchHHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcc--------
Confidence 7652 267898754 445555543 3567887754 344455555678899999998877642110
Q ss_pred eeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
.+....-++..|+|+..+++ .|| .+||++....+..+.... .-..-.|+|.|.-++.-+
T Consensus 1227 -------------~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1227 -------------VTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS- 1285 (1516)
T ss_pred -------------hhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-
Confidence 01122236788999988776 456 489999876666554332 112346999999888765
Q ss_pred CCcEEEeecCcccccccCC
Q 013873 335 DTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 335 dg~v~vw~~~~~~~~~~~~ 353 (434)
-|||+++.+++....
T Consensus 1286 ----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1286 ----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ----hhhhhHHHHHHhcCc
Confidence 499999988876653
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=1.2e-05 Score=73.56 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=135.1
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeE-EEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG-LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
..++.++.+|.++.+|.++|+.+....... .+.+ ... .+..++.+..+|.+.-+|..+++........... ..
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~~ 194 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS---LT 194 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc---cc
Confidence 456778889999999999999888765432 2221 112 2346777788999999999988765444322100 00
Q ss_pred EEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCC-------ceEEEEEcC--CCCcEEEEEecCCcEE
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD-------TVISVRFNP--AEPNVLATTASDRSIT 229 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-------~i~~i~~~~--~~~~~l~~~~~dg~i~ 229 (434)
......++ ...+.-++.+.++.+..+|..+++.+........ ....+..+| .+ ..++.++.+|.+.
T Consensus 195 ~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ 269 (394)
T PRK11138 195 LRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLV 269 (394)
T ss_pred ccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEE
Confidence 00000111 1112222333446788888888876655432110 000111111 13 3455667788888
Q ss_pred EEEccCCCcceEE--------------EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 230 LYDLRMSSPARKV--------------IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 230 iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
.+|..+++...+. +.....++.++.++.......-...........+..+ .+.+|+.++.||.|
T Consensus 270 ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 270 ALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYL 347 (394)
T ss_pred EEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEE
Confidence 8888776543322 1123344555555554322111000000011111111 25678889999999
Q ss_pred EEEeCCCCeeeeEEeccCCccEEE-EEEcCCCCEEEEeeCCCcEEEeec
Q 013873 296 RIFQYNGGRSREIYHTKRMQRVFC-VKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.+.|..+|+.+....... ..+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 348 ~~ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999998876664432 22221 122 2446888899999988764
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=2.2e-05 Score=71.87 Aligned_cols=250 Identities=8% Similarity=0.011 Sum_probs=139.6
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCC-Cee------EEEEcC--CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG-AVR------GLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~------~i~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
..+++++.+|.+.-+|..+|+.+........ .+. .+.-.| .+..++.++.+|.+.-+|..+++........
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 5678888889999999999998877543210 000 000011 3456778888999999999999876554432
Q ss_pred CCCCCceeEEEecCceEEEeeccCCCEEEE-eCCeEEEEeCCCCcceeeeecCCCce-----EEEEEcCCCCcEEEEEec
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQWGTDTV-----ISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~~l~~~~~ 224 (434)
... ...++ . .++.+++. .++.+..+|..+++.+..+....... .+-... + ..++.++.
T Consensus 150 ~~~--------~ssP~----v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~ 213 (394)
T PRK11138 150 GEA--------LSRPV----V-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGD 213 (394)
T ss_pred Cce--------ecCCE----E-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcC
Confidence 110 00111 1 13333333 34679999999998887765421110 011111 2 24556777
Q ss_pred CCcEEEEEccCCCcceEEEe---------------------------eecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 225 DRSITLYDLRMSSPARKVIM---------------------------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 225 dg~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
+|.+..+|..+++....... ....++.++.+|.......-.. .......+
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~---~~~~~~~~ 290 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR---EYGSVNDF 290 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee---cCCCccCc
Confidence 88888887776544332211 1122233333333322111000 00111111
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
. ..+..++.++.+|.+..+|..+++.+-...........+... .+.+|+.++.||.|.+.|..+|+.+...
T Consensus 291 ~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 291 A--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred E--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 1 145677888889999999999887654332111111222222 2456788899999999999999877554
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=2.2e-05 Score=67.18 Aligned_cols=252 Identities=11% Similarity=0.111 Sum_probs=147.0
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
+.++|+|.++++.+..+.. +-.-.+..+|+++.+++++ ..-.|.+||..+.........+..+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence 4799999999998877753 3334467899999888753 2346999999876443222211100000
Q ss_pred EEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
.......+.++.++++++..+ ..|.+.|+..++.+..+... + |....|.++.-|.+-+.||.+.-..+.
T Consensus 93 ---~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 93 ---VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp ---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ---ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEEC
Confidence 001123457788998888776 35999999999888777642 2 333345455568888889998888887
Q ss_pred CC-CcceEE-----------------------EeeecCceeEEEeeCCCCccce-eeee----------CcccCeEEEEE
Q 013873 235 MS-SPARKV-----------------------IMRANEDCNCYSYDSRKLDEAK-CVHM----------GHESAVMDIDY 279 (434)
Q Consensus 235 ~~-~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~i~~~~~ 279 (434)
.. +...+. ..-.+..+.++..+........ .... -..+.-.-+++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 43 222111 0002333444443333221100 0000 00112223566
Q ss_pred ccCCCEEEEE---eCCC-------cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEe-eCCCcEEEeecCccc
Q 013873 280 SPTGREFVTG---SYDR-------TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISG-SDDTNLRLWKAKASE 347 (434)
Q Consensus 280 sp~~~~l~~~---~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~v~vw~~~~~~ 347 (434)
++..+.|++- +.++ .|.+||+.+++.+..+... ..+.++..+.+.+ +|++. ..++.+.+||..+|+
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 6655444432 1122 3888899999988888655 4677999998665 66554 457899999999999
Q ss_pred ccccCC
Q 013873 348 QLGVLH 353 (434)
Q Consensus 348 ~~~~~~ 353 (434)
.+..+.
T Consensus 324 ~~~~~~ 329 (342)
T PF06433_consen 324 LVRSIE 329 (342)
T ss_dssp EEEEE-
T ss_pred EEeehh
Confidence 987764
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=1.7e-08 Score=90.73 Aligned_cols=243 Identities=17% Similarity=0.189 Sum_probs=144.2
Q ss_pred CCCeEEEEeCCCCC-ceEEeeeCCCcEEEEeCCCCce--eEEeeccCCCeeEEEEcC-CCCeEEEee----CCCcEEEee
Q 013873 66 RDGISCMAKNPNYL-KGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVST-DGRILVSCG----TDCTVKLWN 137 (434)
Q Consensus 66 ~~~V~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~-~~~~l~s~~----~dg~v~iwd 137 (434)
...+.|+++.-+.. .+++.|..+|.|-+-.+....- .....+|....++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45788888766542 6789999999999988764322 223467888999999998 556676662 356789999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
+.+.-.. |.......+ +......+++|..+. .
T Consensus 136 i~s~ltv----------------------------Pke~~~fs~-------------------~~l~gqns~cwlrd~-k 167 (783)
T KOG1008|consen 136 INSLLTV----------------------------PKESPLFSS-------------------STLDGQNSVCWLRDT-K 167 (783)
T ss_pred cccccCC----------------------------Ccccccccc-------------------ccccCccccccccCc-c
Confidence 8765210 000000000 012233478888554 7
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIR 296 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~ 296 (434)
++++|.....+.++|++........ -.+..+..+..+| .++|+++-. ||.|.
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~~~~s--------------------------vnTk~vqG~tVdp~~~nY~cs~~-dg~iA 220 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLDSVSS--------------------------VNTKYVQGITVDPFSPNYFCSNS-DGDIA 220 (783)
T ss_pred hhhcccccchhhhhhhhhhhhhhhh--------------------------hhhhhcccceecCCCCCceeccc-cCcee
Confidence 8889999999999999843221111 1234566788888 778887776 99999
Q ss_pred EEeC-CCCeeeeEEeccC----CccEEEEEEcCCCC-EEEEee-CCCcEEEeecCcccccccCChhhhhhhHHHHHHHHh
Q 013873 297 IFQY-NGGRSREIYHTKR----MQRVFCVKFSCDAS-YVISGS-DDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNR 369 (434)
Q Consensus 297 iwd~-~~~~~~~~~~~~~----~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
+||. ..-+.......+. ...+..++|.|... .+++.. ..++|+.+++..-..-......... .+.... .
T Consensus 221 iwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~--~~~s~~--~ 296 (783)
T KOG1008|consen 221 IWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFV--NYESKY--P 296 (783)
T ss_pred eccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccccee--eecccc--c
Confidence 9993 3222111111111 13488999999433 344444 4578999998643221111110000 000000 1
Q ss_pred hcc---chhhhhhhhccCCCh
Q 013873 370 YKH---LPEIKRIVRHRHLPK 387 (434)
Q Consensus 370 ~~~---~~~v~~~~~~~~~~~ 387 (434)
+.+ -..|+..+||+..|.
T Consensus 297 ~q~~~~~s~I~~f~wH~~s~~ 317 (783)
T KOG1008|consen 297 VQPNSQCSGIDFFTWHTASPT 317 (783)
T ss_pred ccccccccceeecCcCcCCcc
Confidence 222 246788899988864
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.54 E-value=1.2e-05 Score=74.42 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=118.5
Q ss_pred eCCCCCceE-EeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC----cEEEeeCCCCCCCCCCC
Q 013873 74 KNPNYLKGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC----TVKLWNVPVATLTDSDD 148 (434)
Q Consensus 74 ~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~ 148 (434)
++||| ..+ .+.-..+.+.+.|.++.+...++.- .+....+.++++|+++++.+.+. ++..-+....
T Consensus 200 lpnDG-k~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~------- 270 (635)
T PRK02888 200 LPNDG-KDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER------- 270 (635)
T ss_pred cCCCC-CEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccC-------
Confidence 45666 333 2333456788888888777666553 23456688999999998876432 2222222111
Q ss_pred CCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCC-----CcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNR-----SQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
.....+.... ...+.++|+....+++.|.+.|..+ .+.+..+.. ......+.++|+|..+++++.
T Consensus 271 ------d~~vvfni~~---iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 271 ------DWVVVFNIAR---IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred ------ceEEEEchHH---HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC
Confidence 1111111110 0133457777777777899999988 344444444 455788999999987888888
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
.+.++.++|+........-.+ +.+ ....... .-.......+|.++|+...+--.|..|..||+..
T Consensus 341 lS~tVSVIDv~k~k~~~~~~~-----------~~~--~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 341 LSPTVTVIDVRKLDDLFDGKI-----------KPR--DAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcEEEEEChhhhhhhhccC-----------Ccc--ceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 899999999987543210000 000 0000000 1122334578999999888888999999999875
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.51 E-value=9.3e-05 Score=65.72 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=130.0
Q ss_pred CcEEEEeCCCCceeEEeec-cCCCeeEEE---EcCC----CCeEEEeeC----------CCcEEEeeCCCCCCCCCCCCC
Q 013873 89 GDIRLWDIANRRTVCQYSG-HQGAVRGLT---VSTD----GRILVSCGT----------DCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~-h~~~v~~i~---~~~~----~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~ 150 (434)
+.|++.|..+.+.+..+.- ....+++++ +..+ ..+|+.|+. .|.|.++++.... ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~------~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP------EN 75 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc------cc
Confidence 3588888888877665432 223444444 3322 457776643 2889999997640 00
Q ss_pred CCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCc-ceeeeec-CCCceEEEEEcCCCCcEEEEEecCCcE
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ-PINSFQW-GTDTVISVRFNPAEPNVLATTASDRSI 228 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i 228 (434)
.............+++.++..- ++.++++.++.+.+|++...+ ....-.. ....+.++... + +++++|.....+
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv 151 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV 151 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred ceEEEEEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence 0012334445567788888877 556888888899999998877 3322222 23356666665 3 588889888888
Q ss_pred EEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------
Q 013873 229 TLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG------ 302 (434)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------ 302 (434)
.++..+.... .+... ........++++.+-++++.++++..+|.+.++....
T Consensus 152 ~~~~~~~~~~--~l~~v--------------------a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~ 209 (321)
T PF03178_consen 152 SLLRYDEENN--KLILV--------------------ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSR 209 (321)
T ss_dssp EEEEEETTTE---EEEE--------------------EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred EEEEEEccCC--EEEEE--------------------EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccc
Confidence 8886654221 11100 0112345688888887778999999999999998763
Q ss_pred -C--eeeeEEeccCCccEEEE---EEcCC--CC------EEEEeeCCCcEEEe
Q 013873 303 -G--RSREIYHTKRMQRVFCV---KFSCD--AS------YVISGSDDTNLRLW 341 (434)
Q Consensus 303 -~--~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~v~vw 341 (434)
+ +.......+....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 210 ~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 210 DGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 22222333334677777 55552 22 47778889998854
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=4.1e-05 Score=64.81 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=103.2
Q ss_pred EEeCCCCCceEEee-----eCCCcEEEEeCC-CCceeEEeeccCCCeeEEEEcCCCCeEEEeeC----------------
Q 013873 72 MAKNPNYLKGFFSG-----SMDGDIRLWDIA-NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---------------- 129 (434)
Q Consensus 72 ~~~~~~~~~~l~sg-----~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---------------- 129 (434)
-+|++|| .+|++. ...|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+++-.
T Consensus 56 g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4799999 777775 345889999998 66778888888777788999999987776521
Q ss_pred --CCcEEEeeCCCCCCCCCCCCCCCCCCceeE--EEecCceEEEeeccCCCEEEEeC--C---e----EEEEeCCCCcce
Q 013873 130 --DCTVKLWNVPVATLTDSDDSTDNSSEPLAV--YVWKNSFWAVDHQWEGDLFATAG--A---Q----VDIWNHNRSQPI 196 (434)
Q Consensus 130 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~---~----i~i~d~~~~~~~ 196 (434)
+-++...|..++.++.. ... ..+...+.-+++.++|..++... + . +-+++.. +.+
T Consensus 135 tM~psL~~ld~~sG~ll~q----------~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQ----------VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GAL 202 (305)
T ss_pred hcCCceEEEecCCCceeee----------eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Ccc
Confidence 12222233333332211 111 22445678888888888777653 1 1 4444333 322
Q ss_pred eeee-------cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceE
Q 013873 197 NSFQ-------WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241 (434)
Q Consensus 197 ~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 241 (434)
..+. .-...+-+|++++++..+.+|+-..+.+.+||..++.....
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 2222 23578999999999865667777788999999988876543
No 322
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.47 E-value=0.0003 Score=64.24 Aligned_cols=198 Identities=12% Similarity=0.101 Sum_probs=102.8
Q ss_pred cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE
Q 013873 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV 169 (434)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
.|.||+. .|+.+..+.-..+.|.++.|..+. .|+....||.++++|+.... .+.... ...........+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~---~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGE---EIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhh---hccccCccccccccc
Confidence 4999995 566666655444899999998864 56667899999999986332 110000 000000011112223
Q ss_pred eeccCCCEEEEeCCeEEEEeCCCCc-ceeeeecCCCceEE----------EEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 170 DHQWEGDLFATAGAQVDIWNHNRSQ-PINSFQWGTDTVIS----------VRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~----------i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
.+..+|-.+.+.++++.+..-.... ....+..-...... ..++.+. ...+....++.+.+.+-.....
T Consensus 134 ~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 134 WFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred ccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc
Confidence 3344666667766665554332211 11111100000000 1122222 2222223333333222211100
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEE
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 318 (434)
....+++..|++||+|+++|.-..+|.+.+.+..-.+....+.........
T Consensus 213 -----------------------------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~ 263 (410)
T PF04841_consen 213 -----------------------------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPK 263 (410)
T ss_pred -----------------------------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCc
Confidence 123468999999999999999999999999876655555444443333444
Q ss_pred EEEEcCC
Q 013873 319 CVKFSCD 325 (434)
Q Consensus 319 ~~~~s~~ 325 (434)
.+.|.-+
T Consensus 264 ~~~WCG~ 270 (410)
T PF04841_consen 264 QMAWCGN 270 (410)
T ss_pred EEEEECC
Confidence 5555443
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=9.1e-06 Score=73.40 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=64.5
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
.+...|.|++++|+. ..|+.|+.||+|.+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 467899999999998 99999999999999998766433 22345667899999999999999999999999986553
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=9.8e-05 Score=68.63 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=146.1
Q ss_pred eEEeeeCCCcEEEEeCCCCceeEEeecc-------------CCCee-----------------EEEEc---CCCCeEEEe
Q 013873 81 GFFSGSMDGDIRLWDIANRRTVCQYSGH-------------QGAVR-----------------GLTVS---TDGRILVSC 127 (434)
Q Consensus 81 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~-----------------~i~~~---~~~~~l~s~ 127 (434)
.|.+|+..|.|+|+-+.+++.+..+.-. +..|. .+++. -||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 3778999999999999988776654310 00111 01111 156677765
Q ss_pred eC-CCcEEEeeCCCCCCCCCCCCCCCC---C-----CceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcc
Q 013873 128 GT-DCTVKLWNVPVATLTDSDDSTDNS---S-----EPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP 195 (434)
Q Consensus 128 ~~-dg~v~iwd~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~ 195 (434)
.. +..|-.-+++..+.......+... . .+...+...+.-..+-+.++|..+...+ +.+.+.|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 445555555444332222211110 0 1122222223334455677887664433 3478889988877
Q ss_pred eeeeecCCCceEEEEEcCCCCcEEEEEe--cC-CcEEEEEccCCCcceE--------------EEeeecCceeEEEeeCC
Q 013873 196 INSFQWGTDTVISVRFNPAEPNVLATTA--SD-RSITLYDLRMSSPARK--------------VIMRANEDCNCYSYDSR 258 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~d-g~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 258 (434)
...+.... ....++++|++...++++. .. .++...+......... .... ..+.+.++|..
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~ 304 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGR 304 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECC
Confidence 77766533 4567889998854444431 21 2233333222111000 0000 23456677766
Q ss_pred C----CccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCee------------eeEEeccCCccEEEEE
Q 013873 259 K----LDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRS------------REIYHTKRMQRVFCVK 321 (434)
Q Consensus 259 ~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~ 321 (434)
. ..... ..-.-......++++|||+++++++ .+.+|.|.|+.+.+. ......+ ......+
T Consensus 305 t~~~~~~~v~-~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG--lGPLHTa 381 (635)
T PRK02888 305 KAANAGSALT-RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG--LGPLHTA 381 (635)
T ss_pred ccccCCcceE-EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC--CCcceEE
Confidence 5 12222 2223445677899999999876665 589999999987542 1222221 3345688
Q ss_pred EcCCCCEEEEeeCCCcEEEeecCc
Q 013873 322 FSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 322 ~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
|+++|....|-..|..|..|++..
T Consensus 382 FDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 382 FDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ECCCCCEEEeEeecceeEEEehHH
Confidence 999998888888899999999987
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=0.00059 Score=55.45 Aligned_cols=114 Identities=9% Similarity=-0.022 Sum_probs=72.2
Q ss_pred eCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC
Q 013873 74 KNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS 153 (434)
Q Consensus 74 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (434)
..++...+++.|+..+.+.--|..+|....+-. -...|.+-+.- -|++++.|...|.+.+.+..++.....+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~----- 90 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV----- 90 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee-----
Confidence 334444889999999999999999998876532 22333332222 46789999999999999998884322211
Q ss_pred CCceeEEEecCce-EEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC
Q 013873 154 SEPLAVYVWKNSF-WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (434)
....+ ......+++.++..++ ++.+..|..+...+.+.+..
T Consensus 91 --------~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 91 --------ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred --------ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence 11111 1223445666666654 55777777777666655543
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00021 Score=59.64 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=115.4
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc-CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
.+.+-.+.+..++|+|+...++++....+.|..++. +|+.+..+.-. .+-.-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455667779999999986477788888889988896 47777776533 2567889998888777776678999999885
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
.... ...... +.-+.+ .....++..+..++|.|.+..++
T Consensus 95 ~~~~------------~~~~~~-----------------------~~~~~l------~~~~~~N~G~EGla~D~~~~~L~ 133 (248)
T PF06977_consen 95 DDTT------------SLDRAD-----------------------VQKISL------GFPNKGNKGFEGLAYDPKTNRLF 133 (248)
T ss_dssp ---T------------T--EEE-----------------------EEEEE---------S---SS--EEEEEETTTTEEE
T ss_pred cccc------------ccchhh-----------------------ceEEec------ccccCCCcceEEEEEcCCCCEEE
Confidence 4321 000000 000000 00112345688999999874544
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iw 298 (434)
++-...-..+|.++.......+ ...+...... .......+.+++++|. |.+++.+..+..|..+
T Consensus 134 -v~kE~~P~~l~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~ 198 (248)
T PF06977_consen 134 -VAKERKPKRLYEVNGFPGGFDL----------FVSDDQDLDD----DKLFVRDLSGLSYDPRTGHLLILSDESRLLLEL 198 (248)
T ss_dssp -EEEESSSEEEEEEESTT-SS------------EEEE-HHHH-----HT--SS---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEeCCCChhhEEEccccCccce----------eecccccccc----ccceeccccceEEcCCCCeEEEEECCCCeEEEE
Confidence 4556666667766542100000 0000000000 0123345788999995 5667777778889999
Q ss_pred eCCCCeeeeEEeccC--------CccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 299 QYNGGRSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 299 d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
| ..|+....+.-.. ....-.|+|.++|++.++ +..+..++|
T Consensus 199 d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 199 D-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred C-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9 4566555442211 124678999999976555 455555554
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.40 E-value=0.00018 Score=60.90 Aligned_cols=188 Identities=12% Similarity=0.131 Sum_probs=110.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC-CCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD-DSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 158 (434)
..+++++.++.|..||..+|+.+..+.. .+.+..... ..+..++.++.++.+..+|..+++..... ........
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--- 111 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG--- 111 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS---
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccc---
Confidence 5677778999999999999999888774 333222222 23456677778889999999888654331 11100000
Q ss_pred EEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCCCc----------eEEEEEcCCCCcEEEEEecCCc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDT----------VISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
........+. .+.+++.. ++.+..+|..+++.+......... +..-....++ .++.++.+|.
T Consensus 112 ----~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~ 184 (238)
T PF13360_consen 112 ----VRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGR 184 (238)
T ss_dssp ----TB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSS
T ss_pred ----cccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCe
Confidence 0001111112 22233333 578999999999998777664322 1122222223 4555666665
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 307 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 307 (434)
+..+|+.++...... . ...+..+ ..+++..|++++.++.|..||+.+++..-
T Consensus 185 ~~~~d~~tg~~~w~~--------------------------~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 185 VVAVDLATGEKLWSK--------------------------P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEETTTTEEEEEE--------------------------C-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCEEEEe--------------------------c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 333388776532211 1 1112221 34577888888899999999999998653
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=7.6e-06 Score=76.60 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
+++++|+|.. -.|+.|-.-|.+.+|...+.+.......|+.+|..+.|+++|..|+++..-|.|.+|....
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 5669999996 7889999999999999888777666678999999999999999999999999999998863
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.8e-05 Score=66.64 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=64.2
Q ss_pred EEEEeCCCCceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE
Q 013873 91 IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV 169 (434)
Q Consensus 91 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
++..+..+.+....+.+|...|.+++|+|... ++..++.+..|+|.|+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---------------------------- 226 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---------------------------- 226 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc----------------------------
Confidence 44444444444444556677788888887555 5667777777777777654
Q ss_pred eeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC
Q 013873 170 DHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 237 (434)
..+..+..+ ..+.+++|.-++.+++.+|...|.|.+||++..+
T Consensus 227 ------------------------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 227 ------------------------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ------------------------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 223333343 6688888988888888889899999999988654
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=6e-06 Score=76.82 Aligned_cols=151 Identities=11% Similarity=0.164 Sum_probs=99.8
Q ss_pred EEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeee
Q 013873 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 246 (434)
.+++++..-..+.+-.|.+++++....- .+...|... .-.| .++++|+.||.|.|..+-+......+
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~~~---- 109 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEITQY---- 109 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecCCcc--ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccceeE----
Confidence 3444443333344444678888765432 222222222 3344 79999999999999888776655433
Q ss_pred cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCC-CeeeeEEeccCCccEEEE
Q 013873 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-----GREFVTGSYDRTIRIFQYNG-GRSREIYHTKRMQRVFCV 320 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~ 320 (434)
.-..++.+++++|+ .+.+++||..| +.++.-+- +...........++|.++
T Consensus 110 ----------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 110 ----------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI 166 (846)
T ss_pred ----------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE
Confidence 23568999999997 56799999888 77775331 111112223334899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecCcccccccCChhh
Q 013873 321 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 356 (434)
Q Consensus 321 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 356 (434)
.| .|+++|-++.+| |+|||+.+++.+..+.++.
T Consensus 167 ~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 167 KW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred Ee--cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence 99 578898887775 8999999999988776543
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.4e-05 Score=74.87 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=80.2
Q ss_pred EEEEeCCCCCceEEeee----CCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 70 SCMAKNPNYLKGFFSGS----MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
+-..|+|.. .+|+.++ ..|+|.||- ++|++-.... -.-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 19 ti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--- 92 (1416)
T KOG3617|consen 19 TISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--- 92 (1416)
T ss_pred cccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce---
Confidence 335799987 7888775 458899985 5666543322 12235679999998888999889999999986653
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCC
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHN 191 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~ 191 (434)
.......+..++..+.|+++|..+.+++ |.+.+|...
T Consensus 93 ---------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 ---------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3334455677899999999999999998 679999765
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00025 Score=69.59 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=124.1
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVD 186 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 186 (434)
...|.++.|..++..++.+..+|.|.+-|.++.. ........++|.+++|+||+.+++...+ ++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 3589999999999989999999999999876552 2233345678999999999998877664 333
Q ss_pred EEeC----CCC-------------------cceeeeecC---------------------CCceEEEEEcCCCCcEEEEE
Q 013873 187 IWNH----NRS-------------------QPINSFQWG---------------------TDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 187 i~d~----~~~-------------------~~~~~~~~~---------------------~~~i~~i~~~~~~~~~l~~~ 222 (434)
+.+- -.. +.-..|.+. .+.=++|+|--+| .+|++.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs 213 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVS 213 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEE
Confidence 3221 111 111122211 1112358888877 677663
Q ss_pred e----cC-CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe---CCCc
Q 013873 223 A----SD-RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRT 294 (434)
Q Consensus 223 ~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~ 294 (434)
. .+ ..|++||-. +.... . -....+.=.+++|-|.|.++++-. .|+.
T Consensus 214 ~~~~~~~~RkirV~drE-g~Lns-~------------------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 214 FVESETGTRKIRVYDRE-GALNS-T------------------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred EEeccCCceeEEEeccc-chhhc-c------------------------cCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 2 23 689999876 21100 0 001223345689999999988753 4667
Q ss_pred EEEEeCCCCeeeeE-E-eccCCccEEEEEEcCCCCEEEE---eeCCCcEEEeecCcc
Q 013873 295 IRIFQYNGGRSREI-Y-HTKRMQRVFCVKFSCDASYVIS---GSDDTNLRLWKAKAS 346 (434)
Q Consensus 295 i~iwd~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~s---~~~dg~v~vw~~~~~ 346 (434)
|.+|.-+.-..-.. + .......+..++|+.++..|++ ......|++|-+.+.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 99998654332111 1 1122234899999999999887 444445999987654
No 333
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=7.9e-05 Score=66.66 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=121.5
Q ss_pred CCeEEEEeCCCCCceEEeeeCC-----CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe----------eCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMD-----GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC----------GTDC 131 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~----------~~dg 131 (434)
+.|....|+|.+ ++||--+.. ..+.+-.+.+++.+++-.-|.-.=..+.|-.+|.+|+.- |.-.
T Consensus 347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 567778899987 777754321 346777777777776654444333456777888888742 1222
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-----eEEEEeCCCC----cceeeeecC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-----QVDIWNHNRS----QPINSFQWG 202 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~i~d~~~~----~~~~~~~~~ 202 (434)
.+-|+.++.. ..++........+..++|.|.|..++.-.| ++.+|..++. +.+..+.
T Consensus 426 n~eIfrireK------------dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-- 491 (698)
T KOG2314|consen 426 NLEIFRIREK------------DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-- 491 (698)
T ss_pred eEEEEEeecc------------CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--
Confidence 4556666554 456777778889999999999998776543 4888887632 2233332
Q ss_pred CCceEEEEEcCCCCcEEEEE---ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 203 TDTVISVRFNPAEPNVLATT---ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
....+.+.|+|.|. +++.+ |..|.+.++|+........ ........+.+.|
T Consensus 492 k~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~k~~-------------------------~~~eh~~at~veW 545 (698)
T KOG2314|consen 492 KKFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADLKDT-------------------------ASPEHFAATEVEW 545 (698)
T ss_pred ccccceEEEcCCCc-EEEEEEecccccceEEEecchhhhhhc-------------------------cCccccccccceE
Confidence 45678899999994 44443 3468899998764221110 0112234577899
Q ss_pred ccCCCEEEEEeCCC
Q 013873 280 SPTGREFVTGSYDR 293 (434)
Q Consensus 280 sp~~~~l~~~~~d~ 293 (434)
.|.|+|+++++.-+
T Consensus 546 DPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSW 559 (698)
T ss_pred CCCCCEEEEeeehh
Confidence 99999999998643
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0023 Score=58.07 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=156.7
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~ 146 (434)
....+...+++....++-.....+...+............-...-..++.++.+..++ +...++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---
Confidence 4556677777734334333333555555442222221111113345678888777444 445568999999655432
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
.........-..+++++++..+...+ +.+.+.|..+.+.+........+ ..+++.|++...+++
T Consensus 109 ----------~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 109 ----------LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred ----------eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEE
Confidence 22222223556788888886555443 34888898888888776554444 899999999667777
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEE
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIF 298 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iw 298 (434)
-..++.|.+.|........ -. .. ....-......+.++|+|+++...... +.+...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~-~~-------------------~~-~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVR-GS-------------------VG-SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred ecCCCeEEEEeCCCcceec-cc-------------------cc-cccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 7789999999965543321 00 00 000122334568999999976665544 589999
Q ss_pred eCCCCeeeeEE-eccCCccEEEEEEcCCCCEEEEeeC-CCcEEEeecCcccccccCC
Q 013873 299 QYNGGRSREIY-HTKRMQRVFCVKFSCDASYVISGSD-DTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 299 d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~ 353 (434)
|..++...... ..... ....+..+|+|.++.+... .+.+.+-|..+......+.
T Consensus 237 d~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 237 DTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 99888776652 22222 4567899999999988754 4889999988877766543
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.00085 Score=63.18 Aligned_cols=257 Identities=12% Similarity=0.088 Sum_probs=136.6
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCC------Cee--EEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG------AVR--GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (434)
..++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.+|.|.-+|.++++.........
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4577788889999999999998877653322 010 11111 22578888889999999999987765543322
Q ss_pred CCCCceeEEEecCceEEEeeccCCCEEEEe----------CCeEEEEeCCCCcceeeeecCCCc----------------
Q 013873 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATA----------GAQVDIWNHNRSQPINSFQWGTDT---------------- 205 (434)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~i~d~~~~~~~~~~~~~~~~---------------- 205 (434)
.... . ...... ..+. ++.+++.. ++.+..+|..+++.+..+......
T Consensus 141 ~~~~--~-~~i~ss---P~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 141 QVPP--G-YTMTGA---PTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred CcCc--c-eEecCC---CEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 1000 0 000000 0000 12222221 246788888888877766542110
Q ss_pred ----e-EEEEEcCCCCcEEEEEecCC------------------cEEEEEccCCCcceEEEe------------------
Q 013873 206 ----V-ISVRFNPAEPNVLATTASDR------------------SITLYDLRMSSPARKVIM------------------ 244 (434)
Q Consensus 206 ----i-~~i~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~------------------ 244 (434)
+ .+.++.+.+ .+++.++.++ .|.-+|..+++.......
T Consensus 214 ~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 0 122333333 4566666554 577777776655444321
Q ss_pred -------------eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE------------------eCCC
Q 013873 245 -------------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG------------------SYDR 293 (434)
Q Consensus 245 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~------------------~~d~ 293 (434)
.+..++.++.+|.......-..... ...++.+| ..++.+ ..+|
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 1222333333333322211110000 01123333 333332 2357
Q ss_pred cEEEEeCCCCeeeeEEeccCC-------ccE--EEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 294 TIRIFQYNGGRSREIYHTKRM-------QRV--FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~-------~~v--~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.|.-.|+.+++.+-....... .+. ..+.. .+.+|++++.||.|+.+|..+|+.+-...
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 788889888887665543300 011 11222 55678889999999999999999886553
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00063 Score=62.25 Aligned_cols=237 Identities=13% Similarity=0.144 Sum_probs=118.0
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
+....-....+.++|+| ..++. +.||.-.|+.....+.... +.-....|.+.+ .+|+-...++|.|+.--..
T Consensus 28 lg~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred CCCCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 33344567899999998 66666 5578888888444433222 334567898854 5777777889999632222
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe-EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ-VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.... .......+..+-. |.+++..+.. |.+||+.+++.+..+... .|..+.|++++ .+++
T Consensus 100 ~~~k-------------~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~va 160 (443)
T PF04053_consen 100 EVVK-------------SIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVA 160 (443)
T ss_dssp -TT------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEE
T ss_pred ccce-------------EEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEE
Confidence 1100 1111111112211 6666666654 999999999999988753 48999999998 5666
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
..+. ..+.+++........ -+.............-...|.+.+|..+ .|+-.+.. .++. +
T Consensus 161 l~t~-~~i~il~~~~~~~~~--------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 161 LVTK-DSIYILKYNLEAVAA--------------IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHH--------------BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred EEeC-CeEEEEEecchhccc--------------ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 5554 467776654321000 0000000111122222456777888654 44444433 6665 4
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
-.|......... .++.-+.+.+..+.++....|+.|..+.+....
T Consensus 221 ~~Ge~~~i~~ld--~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 221 VNGETGIIAHLD--KPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ETTEEEEEEE-S--S--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EcCCcceEEEcC--CceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 445443333222 567777888877788888889999888876543
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.26 E-value=0.00088 Score=58.11 Aligned_cols=247 Identities=13% Similarity=0.148 Sum_probs=133.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCC-CC-Cce
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDN-SS-EPL 157 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-~~~ 157 (434)
+.|+.|+.+| +.++++........+. +...|..+...++-+.|++-+ |+.+.++++.............. .. ...
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 7899999998 9999983333222222 233499999999877777655 59999999876654332110000 00 000
Q ss_pred eEEEecCceEEEe---eccCCCEEEEe-CCeEEEEeCCCC-----cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcE
Q 013873 158 AVYVWKNSFWAVD---HQWEGDLFATA-GAQVDIWNHNRS-----QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSI 228 (434)
Q Consensus 158 ~~~~~~~~~~~~~---~~~~~~~~~~~-~~~i~i~d~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 228 (434)
........+..++ .......++.+ ...+.+|.+... +....+.. ...+.+++|.+ +.++.|..+ ..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~~~-~f 159 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGTSK-GF 159 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEeCC-ce
Confidence 0111122233333 22233344444 457777776543 34455554 47789999994 457666654 47
Q ss_pred EEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee-e
Q 013873 229 TLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-E 307 (434)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~ 307 (434)
.+.|+.+.....-....... ...........++..+... ++.+|++. |..-.+.|....... .
T Consensus 160 ~~idl~~~~~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~ 223 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSS-------------SSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKS 223 (275)
T ss_pred EEEecCCCCceEEeCccCCc-------------chhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCccc
Confidence 78888865543222110000 0000001122344444443 45666643 444445555433222 1
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 308 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 308 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
.+.-. ....++++ ...||++.+.+ .|.||++.++++++++..+
T Consensus 224 ~i~W~--~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 224 TIQWS--SAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEcC--CchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 22111 34556666 34577776654 5999999999999888644
No 338
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.00087 Score=58.12 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=132.4
Q ss_pred EeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCC
Q 013873 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDN 152 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 152 (434)
.|.++...++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+.+...........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 47777645677777788999999876643 2333 3344555555555556666543 456666654433111100000
Q ss_pred CCCceeEEEecCceEEEeeccCCCEEEEeCC-------------eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 153 SSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-------------QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
-......+.....|+|.+.++..+ .++.+|. .+..+..+..+-..-+.++|+|++..++
T Consensus 107 -------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 107 -------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred -------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 001133455667777776665433 2444443 4555555554445567899999996666
Q ss_pred EEEecCCcEEEEEccC--CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC-cEE
Q 013873 220 ATTASDRSITLYDLRM--SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR-TIR 296 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~ 296 (434)
++=+..+.|.-|++.. ...... ..........+..-.++...+|.+.+++..+| .|.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~--------------------~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGR--------------------RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCc--------------------ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 6666668888888763 111100 00111123445666788888998886655554 899
Q ss_pred EEeCCCCeeeeEEeccCCccEEEEEE-cCCCCEEEEee
Q 013873 297 IFQYNGGRSREIYHTKRMQRVFCVKF-SCDASYVISGS 333 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~ 333 (434)
+|+.. ++++..+.... ..+++++| .|+.+.|+..+
T Consensus 239 ~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEe
Confidence 99998 88877776665 56788888 44555554433
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0041 Score=54.78 Aligned_cols=255 Identities=17% Similarity=0.186 Sum_probs=121.0
Q ss_pred EeCCCCCceEEeeeCCCc--EEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 73 AKNPNYLKGFFSGSMDGD--IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
+|.++|..+|+++..||. +.+.|+.+++..+...+.........++++++.++-......|.-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~------- 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE------- 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-------
Confidence 577888666676666664 67778888876655443323344567788888876665667888888887642
Q ss_pred CCCCCceeEEEecCceE-EEee--ccCCCEEEEe------------------------CCeEEEEeCCCCcceeeeecCC
Q 013873 151 DNSSEPLAVYVWKNSFW-AVDH--QWEGDLFATA------------------------GAQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~------------------------~~~i~i~d~~~~~~~~~~~~~~ 203 (434)
..++....... ...+ +.++..++.. ...|.-.|+.+++....+.. .
T Consensus 115 ------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-~ 187 (386)
T PF14583_consen 115 ------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-T 187 (386)
T ss_dssp ------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-S
T ss_pred ------EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-C
Confidence 12222222221 1222 2344444321 01266668888776555553 5
Q ss_pred CceEEEEEcCCCCcEEEEEec---CC-cEEEEEccCCCcceEE--------------------------EeeecCceeEE
Q 013873 204 DTVISVRFNPAEPNVLATTAS---DR-SITLYDLRMSSPARKV--------------------------IMRANEDCNCY 253 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~ 253 (434)
..+..+.|+|..+.+++-|.. +. .-+||-+++....... ...+..+..+.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 678889999999888877654 22 1366766543211111 01122222333
Q ss_pred EeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC----------------cEEEEeCCCCeeeeEEec------
Q 013873 254 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR----------------TIRIFQYNGGRSREIYHT------ 311 (434)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~----------------~i~iwd~~~~~~~~~~~~------ 311 (434)
.++........ . ........+..++||++++-=+.|. .|+++++..+........
T Consensus 268 ~~d~~t~~~~~-~--~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v 344 (386)
T PF14583_consen 268 GYDPDTGERRR-L--MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV 344 (386)
T ss_dssp EE-TTT--EEE-E--EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred eeCCCCCCceE-E--EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence 33333322111 1 1112334455678998877544442 466788877665432211
Q ss_pred ---cCCccEEEEEEcCCCCEEEE-eeCCCcEEEeecC
Q 013873 312 ---KRMQRVFCVKFSCDASYVIS-GSDDTNLRLWKAK 344 (434)
Q Consensus 312 ---~~~~~v~~~~~s~~~~~l~s-~~~dg~v~vw~~~ 344 (434)
+....=....|+|||++|+- +...|...||-++
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 00011235889999998764 5567888877654
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00024 Score=64.71 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=115.4
Q ss_pred CceeEEeeccCCCeeEEEEcCCCCeEEEe---eCC-CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC
Q 013873 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSC---GTD-CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE 174 (434)
Q Consensus 99 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (434)
+.....+..-...+..-+|+|++..++-. ... ..+.+++++++... ........-....|+|+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------~i~~~~g~~~~P~fspD 248 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------VILNFNGNNGAPAFSPD 248 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------eeeccCCccCCccCCCC
Confidence 33334444445567777899988865543 222 46889999877432 11223334445679999
Q ss_pred CCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEE--EccCCCcceEEEeeec
Q 013873 175 GDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLY--DLRMSSPARKVIMRAN 247 (434)
Q Consensus 175 ~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~ 247 (434)
|+.++-.. + +|+++|+..+... .+....+.-..=.|+|+|..++++.+..|.-.|| +...... ..+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT---- 322 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT---- 322 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee----
Confidence 98877654 2 4899999887733 3444344444678999998777777777765554 4433332 1111
Q ss_pred CceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-RT--IRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
...+.-..-.|+|||++|+..+.. |. |.+.|+.++.....+... .....-.|.+
T Consensus 323 ---------------------~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~--~~~e~ps~~~ 379 (425)
T COG0823 323 ---------------------FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST--YLNESPSWAP 379 (425)
T ss_pred ---------------------ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc--ccCCCCCcCC
Confidence 111111256799999998877743 43 677777666543333221 2334566778
Q ss_pred CCCEEEEee
Q 013873 325 DASYVISGS 333 (434)
Q Consensus 325 ~~~~l~s~~ 333 (434)
+++.+...+
T Consensus 380 ng~~i~~~s 388 (425)
T COG0823 380 NGRMIMFSS 388 (425)
T ss_pred CCceEEEec
Confidence 887766544
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00036 Score=65.95 Aligned_cols=201 Identities=11% Similarity=0.133 Sum_probs=117.0
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc-eEEEeeccCCCEEEEeC---C----eEEE
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS-FWAVDHQWEGDLFATAG---A----QVDI 187 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~----~i~i 187 (434)
+|++.+..++.|+.+|.|.+.+-.-. .... ....... +..+-...+..++++.+ + .++|
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRG------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeeh------------heecchhhhhHhhcccCceEEEEEeecCCCCceEEEE
Confidence 46788889999999999988874211 1011 1111111 22222222334454432 1 3899
Q ss_pred EeCCCC------cce---eee----ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 188 WNHNRS------QPI---NSF----QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 188 ~d~~~~------~~~---~~~----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
|+++.- .++ ..+ .....++.+++.+.+- ..+|+|-.+|.|..+.=. ..+..
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GD---i~RDr------------ 160 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGD---ILRDR------------ 160 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCc---chhcc------------
Confidence 998653 222 111 1125678888998875 789999999999988522 11100
Q ss_pred eeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
+...........+|+++++..++..++-...-..|.+|.+....+.......+..++.|..+++....+++++.
T Consensus 161 ------gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 161 ------GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred ------ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 00001112346799999999998873333335679999998554334434555578889999875553444433
Q ss_pred CCcEEEeecCcccccccC
Q 013873 335 DTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 335 dg~v~vw~~~~~~~~~~~ 352 (434)
..|.+|+....+.--++
T Consensus 235 -e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 235 -EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred -ceEEEEcCCCcceeeee
Confidence 36788877654443333
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.10 E-value=0.0083 Score=55.54 Aligned_cols=242 Identities=16% Similarity=0.157 Sum_probs=126.1
Q ss_pred CCeEEEEeCCCCCceEE-eeeCCC----cEEEEeCCCCceeEEe-eccCCCeeEEEEcCCCCeEEEeeCCC---------
Q 013873 67 DGISCMAKNPNYLKGFF-SGSMDG----DIRLWDIANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDC--------- 131 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~-sg~~dg----~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg--------- 131 (434)
-.+....++|+| ++|| +-+..| .|+++|+.+++.+... ... ....+.|.++++.|+....+.
T Consensus 124 ~~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 124 VSLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EEeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344567899999 6665 434445 4999999999776532 221 122399999988776654433
Q ss_pred --cEEEeeCCCCCCCCCCCCCCCCCCceeEEEec--Cc-eEEEeeccCCCEEEEeC------CeEEEEeCCCC----cce
Q 013873 132 --TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK--NS-FWAVDHQWEGDLFATAG------AQVDIWNHNRS----QPI 196 (434)
Q Consensus 132 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~------~~i~i~d~~~~----~~~ 196 (434)
.|..|.+.+... ....++... .. ...+..++++.+++... ..+.+.++..+ ...
T Consensus 201 ~~~v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 201 PRQVYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp CEEEEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred CcEEEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 377777765532 112222221 12 55788899998876532 24888888774 223
Q ss_pred eeeecCCCceE-EEEEcCCCCcEEEEEec---CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc
Q 013873 197 NSFQWGTDTVI-SVRFNPAEPNVLATTAS---DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES 272 (434)
Q Consensus 197 ~~~~~~~~~i~-~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (434)
..+......+. .+... .+ .+++.... .+.|...++........ ...+..+..
T Consensus 270 ~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~----------------------~~~l~~~~~ 325 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEW----------------------WTVLIPEDE 325 (414)
T ss_dssp EEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGE----------------------EEEEE--SS
T ss_pred EEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccc----------------------eeEEcCCCC
Confidence 33333333333 33333 23 34433322 24455555554432110 112223444
Q ss_pred --CeEEEEEccCCCEEEEE-eCCC--cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE-E-ee--CCCcEEEeec
Q 013873 273 --AVMDIDYSPTGREFVTG-SYDR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI-S-GS--DDTNLRLWKA 343 (434)
Q Consensus 273 --~i~~~~~sp~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s-~~--~dg~v~vw~~ 343 (434)
.+..+.. .+++|+.. ..++ .|+++++..+...........+.|..+...+++..+. + .+ .-+.+..||+
T Consensus 326 ~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 326 DVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp SEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred ceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 3444443 44555444 4444 4889999833433333333336677776666655433 2 22 2477888998
Q ss_pred Ccccc
Q 013873 344 KASEQ 348 (434)
Q Consensus 344 ~~~~~ 348 (434)
.+++.
T Consensus 404 ~t~~~ 408 (414)
T PF02897_consen 404 ATGEL 408 (414)
T ss_dssp TTTCE
T ss_pred CCCCE
Confidence 88765
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00047 Score=62.83 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=91.5
Q ss_pred CCCCeEEEEeCCCCCceEEeeeC--C-CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEe--eC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSM--D-GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLW--NV 138 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~--d-g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iw--d~ 138 (434)
-...+..-+|+|++..+.+..-. . ..+.++|+++++....+. ..+.-...+|+|||+.|+.+ ..||...|| |+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 34456667789988333333211 2 459999999887655443 23334456899999977654 556665555 55
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---C--eEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
...... ......+.-..-.|+|+|..++..+ | .|.+++.+.+... .+......-..-.|+|
T Consensus 270 ~~~~~~-------------~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~Sp 335 (425)
T COG0823 270 DGKNLP-------------RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCCcce-------------ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCC
Confidence 544321 1111122222557899999877654 2 3888888877653 2222222223778999
Q ss_pred CCCcEEEEEecCCc--EEEEEccCC
Q 013873 214 AEPNVLATTASDRS--ITLYDLRMS 236 (434)
Q Consensus 214 ~~~~~l~~~~~dg~--i~iwd~~~~ 236 (434)
+|..+++....+|. |.+.|+.+.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCC
Confidence 99666555544555 444554443
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0032 Score=58.53 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=84.0
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE-eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
|...|.--+++..+ .+++.|+.-|.+++|+-..+..... ..+-.+.+..+..+++..++|.|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 45556555666666 8999999999999999777654332 233455667778888888899999999999998876322
Q ss_pred CCCCCCCCCCCCceeEE--EecCceEEEeeccCCCEEEEeC--CeEEEEeCCC
Q 013873 144 TDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR 192 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~ 192 (434)
... ...... .+...|+++.|++++..+.+|+ |.|..-.++.
T Consensus 111 ~~~--------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDL--------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Ccc--------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 001111 1467899999999999999998 5566655554
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.0045 Score=50.54 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=50.9
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
++++.|+..|.+++.+..+|.....+..-..--......+++..+..|+.|++.+..|..+...+-
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 568899999999999999998877776432222223456788899999999999999987765543
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.99 E-value=0.014 Score=55.16 Aligned_cols=229 Identities=10% Similarity=0.092 Sum_probs=123.0
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCC-----ee-EEEEcCCCCeEEEee---------CCCcEEEeeCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-----VR-GLTVSTDGRILVSCG---------TDCTVKLWNVPVATLT 144 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~-~i~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~ 144 (434)
..++.++.+|.|+-+|.++|+.+..+...... +. ...+. + ..++.++ .+|.+.-+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 46777888999999999999998876543221 11 11122 2 3455543 3678899999888766
Q ss_pred CCCCCCCCCCCcee-------EE-EecCce-EEEeeccCCCEEEEeC--C------------------eEEEEeCCCCcc
Q 013873 145 DSDDSTDNSSEPLA-------VY-VWKNSF-WAVDHQWEGDLFATAG--A------------------QVDIWNHNRSQP 195 (434)
Q Consensus 145 ~~~~~~~~~~~~~~-------~~-~~~~~~-~~~~~~~~~~~~~~~~--~------------------~i~i~d~~~~~~ 195 (434)
-............. .. .....+ ....+.+.+..++.+. + .+.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 54433211000000 00 000111 1233333333333332 2 588889999998
Q ss_pred eeeeecCCCceE------EEEEc----CCC--CcEEEEEecCCcEEEEEccCCCcceEEEee----ec------------
Q 013873 196 INSFQWGTDTVI------SVRFN----PAE--PNVLATTASDRSITLYDLRMSSPARKVIMR----AN------------ 247 (434)
Q Consensus 196 ~~~~~~~~~~i~------~i~~~----~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~------------ 247 (434)
+..++....... ...+. -++ ..++++++.+|.+..+|.++++........ ..
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~ 348 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHI 348 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccc
Confidence 877653211111 00111 112 125778888999999999988776554321 01
Q ss_pred ---------------CceeEEEeeCCCCccceeeeeC-cc------cCe--EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 248 ---------------EDCNCYSYDSRKLDEAKCVHMG-HE------SAV--MDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 248 ---------------~~~~~~~~~~~~~~~~~~~~~~-~~------~~i--~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
..+.++.+|.......-....+ +. .+. ..+.. .+..|++++.||.|+.+|..+|
T Consensus 349 ~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 349 PLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred cccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCC
Confidence 1233444444332211111111 00 011 01111 4578888899999999999999
Q ss_pred eeeeEEecc
Q 013873 304 RSREIYHTK 312 (434)
Q Consensus 304 ~~~~~~~~~ 312 (434)
+.+......
T Consensus 427 ~~lW~~~~~ 435 (488)
T cd00216 427 KELWKFRTP 435 (488)
T ss_pred ceeeEEECC
Confidence 988777554
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0019 Score=59.22 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=82.2
Q ss_pred cCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceE
Q 013873 163 KNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 241 (434)
......+.++|+|+.++.++ |.-.||.....+... .+....++|.+. +.+++-...+.|.++.--.......
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecC--ccEEEEECCCeEEEEEcCccccceE
Confidence 34567899999999887765 677787743333221 234567889984 4577777788899963222222112
Q ss_pred EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEE
Q 013873 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVK 321 (434)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 321 (434)
+. ....+..+.. |.+|+..+. +.|.+||+.+++.+..+.. .+|..+.
T Consensus 105 i~--------------------------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---~~vk~V~ 151 (443)
T PF04053_consen 105 IK--------------------------LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---SAVKYVI 151 (443)
T ss_dssp -----------------------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEE
T ss_pred Ec--------------------------CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---CCCcEEE
Confidence 11 1112344432 888887774 4899999999988877754 3589999
Q ss_pred EcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 322 FSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 322 ~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
|+++|.+++..+.+ .+.|++.+..
T Consensus 152 Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 152 WSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp E-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EECCCCEEEEEeCC-eEEEEEecch
Confidence 99999999988765 7888876554
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.0096 Score=54.56 Aligned_cols=167 Identities=10% Similarity=0.113 Sum_probs=79.9
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe-------eccCCCeeEEEEcCCCCeEEEeeCC
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVSTDGRILVSCGTD 130 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~~~d 130 (434)
++..+.--.+.|.++.|+.+ ..|+.-..||.+++||+.... ...+ .-....+.+..+..+|-.+++ .+
T Consensus 72 ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~ 146 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GN 146 (410)
T ss_pred EeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CC
Confidence 34444323389999999886 557777789999999986333 1111 111222333344445533333 34
Q ss_pred CcEEEeeCCCCCCC-CCCCCCCCCCCceeEEEecCceEEEeeccCC--CEEEEeCCeEEEEeCCCCcceeeeecCCCceE
Q 013873 131 CTVKLWNVPVATLT-DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAGAQVDIWNHNRSQPINSFQWGTDTVI 207 (434)
Q Consensus 131 g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (434)
+.+.+.+-...... .... ..+........+........++.+. .++++.++.+.+.+....+. +. ..+++.
T Consensus 147 ~~~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~ 220 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLP--EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPII 220 (410)
T ss_pred CeEEEEeCccccchhhccc--cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeE
Confidence 44443322111100 0000 0000000000000000001122222 22333344555444333211 21 246799
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
.++++|++ ++++.-..+|.+.+....-.
T Consensus 221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 221 KIAVSPNG-KFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred EEEECCCC-CEEEEEECCCCEEEEECccc
Confidence 99999999 67888888899888875443
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=2.9e-06 Score=76.85 Aligned_cols=162 Identities=16% Similarity=0.279 Sum_probs=107.9
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeee----CCCcEEEEeCCCC--cee--EEeec-cCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGS----MDGDIRLWDIANR--RTV--CQYSG-HQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~----~dg~i~iwd~~~~--~~~--~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
..+|....++++|++-..+.||+|- .|..+.|||+.++ .+. ..|.+ ......+++|..+.+.+++|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 3567778999999997657788873 3567999999876 221 12222 3345668999988889999988889
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC-CeEEEEeC-CC-CcceeeeecCC----C
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG-AQVDIWNH-NR-SQPINSFQWGT----D 204 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~i~d~-~~-~~~~~~~~~~~----~ 204 (434)
++++|++....... ......+..+.+.| .+.++++.. +.|.+||. .. ..++..+.... .
T Consensus 178 ~~ifdlRqs~~~~~-------------svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~ 244 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVS-------------SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPK 244 (783)
T ss_pred hhhhhhhhhhhhhh-------------hhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCccc
Confidence 99999873311100 00111334455666 666776654 77999994 22 23333333322 2
Q ss_pred ceEEEEEcCCCCcEEEEEecC-CcEEEEEccCC
Q 013873 205 TVISVRFNPAEPNVLATTASD-RSITLYDLRMS 236 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~ 236 (434)
.+..++|.|....++++...| ++|++||+...
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 489999999887778777765 68999998643
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.00045 Score=66.83 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=92.8
Q ss_pred CeEEEEeCCCCcceeeeecCCCc-eEEEEEcCC----CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeC
Q 013873 183 AQVDIWNHNRSQPINSFQWGTDT-VISVRFNPA----EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDS 257 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
..++-.|+++|+.+..+..+... |..++-... .+.--+.|-.+..+..||.|... .++.....
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~---------- 571 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQS---------- 571 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeeccc----------
Confidence 34888999999999999887654 555443211 11234567888899999998653 11110000
Q ss_pred CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
.. .......+|++-+.+| +||+|+.+|.||+||-- ++.-.+...+-..+|.+|..+.||++|++.+ +..
T Consensus 572 -------k~-Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ty 640 (794)
T PF08553_consen 572 -------KQ-YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTY 640 (794)
T ss_pred -------cc-cccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cce
Confidence 00 1234456777777666 79999999999999954 3333333344458999999999999998776 457
Q ss_pred EEEeecC
Q 013873 338 LRLWKAK 344 (434)
Q Consensus 338 v~vw~~~ 344 (434)
|.+++..
T Consensus 641 LlLi~t~ 647 (794)
T PF08553_consen 641 LLLIDTL 647 (794)
T ss_pred EEEEEEe
Confidence 8888763
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0062 Score=55.07 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=38.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEc-----CCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 285 EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS-----CDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
++++++ +..++++...+.+......... .....+.+- ..+..|++-..+|.|+++.+..-+.+..+.
T Consensus 228 ~vVvvS-e~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 228 YVVVVS-ESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEE--SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred EEEEEc-ccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 444444 7789999988776654443211 222334442 356678888899999999999888776554
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.91 E-value=0.0014 Score=46.29 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=51.3
Q ss_pred eEEEEe---CCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 69 ISCMAK---NPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 69 V~~~~~---~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
|++|++ ..+|.+.|++|+.|..|++|+- ...+.++. -.+.|++++-... ..|+.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 556665 4456688999999999999984 46667776 4567888877766 57888999999999984
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=5.4e-05 Score=42.69 Aligned_cols=39 Identities=36% Similarity=0.663 Sum_probs=34.3
Q ss_pred CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 99 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
++....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=8.8e-05 Score=67.51 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCee-EEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR-GLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
...|.-+.|+|.- .++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4578889999998 999999999999999987 788888887888888 9999999999999999999999999988654
Q ss_pred C
Q 013873 145 D 145 (434)
Q Consensus 145 ~ 145 (434)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 3
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=3e-05 Score=43.82 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=33.6
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD 95 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd 95 (434)
..+..+..|...|.++.|++.+ ..+++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456677899999999999998 8999999999999996
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00028 Score=65.24 Aligned_cols=124 Identities=13% Similarity=0.202 Sum_probs=88.7
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEE
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 187 (434)
|...|.--+++..+++++.|+.-|.+.+|+-..+.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~------------------------------------------ 69 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK------------------------------------------ 69 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc------------------------------------------
Confidence 34455555667778899999999999999865543210
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
....+..+.+..+..++++ .++|.|+..|.|.++-+....+........ ..
T Consensus 70 ---------~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~-------------------~d 120 (726)
T KOG3621|consen 70 ---------LKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTP-------------------CD 120 (726)
T ss_pred ---------ccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeecc-------------------cc
Confidence 1111124555667777776 789999999999999988755443332211 11
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
..|...|++++|++++..+++|...|.|..-.+++
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 24788999999999999999999999999888876
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.83 E-value=0.012 Score=53.03 Aligned_cols=240 Identities=14% Similarity=0.118 Sum_probs=121.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe-ec-------c---------CCCeeEEEEcCCCCeEEEee
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SG-------H---------QGAVRGLTVSTDGRILVSCG 128 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~-------h---------~~~v~~i~~~~~~~~l~s~~ 128 (434)
...+....|+|+| ..++-.. ++.|.+++..++...+.. .+ - -+.-.++-|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 6778899999998 7777665 578999998777443321 11 0 11235678999999988764
Q ss_pred CC-CcEEEeeCC---CCCC----CCCC--CCCCCC-------------CCc--eeEE----EecCceEEEeeccCCC-EE
Q 013873 129 TD-CTVKLWNVP---VATL----TDSD--DSTDNS-------------SEP--LAVY----VWKNSFWAVDHQWEGD-LF 178 (434)
Q Consensus 129 ~d-g~v~iwd~~---~~~~----~~~~--~~~~~~-------------~~~--~~~~----~~~~~~~~~~~~~~~~-~~ 178 (434)
.| ..|..+.+. .... .... ...... ... +... ....-+..+.|.+++. ++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 333333321 1100 0000 000000 000 0000 1122456778888888 44
Q ss_pred EEeC------CeEEEEeCCCCcceeeeecC-CC---ceEEEEEc-CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeec
Q 013873 179 ATAG------AQVDIWNHNRSQPINSFQWG-TD---TVISVRFN-PAEPNVLATTASDRSITLYDLRMSSPARKVIMRAN 247 (434)
Q Consensus 179 ~~~~------~~i~i~d~~~~~~~~~~~~~-~~---~i~~i~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 247 (434)
+..- ..+.++|..++.....+... .. ......+. +++..++.....||.-+||-+........
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~------ 273 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR------ 273 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE------
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee------
Confidence 3332 13777788776544333221 12 12245554 66666777777777655554443322211
Q ss_pred CceeEEEeeCCCCccceeeeeCcccCeEE-EEEccCCCEEE-EEeCCC----cEEEEeCC-CCeeeeEEeccCCccEEEE
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMD-IDYSPTGREFV-TGSYDR----TIRIFQYN-GGRSREIYHTKRMQRVFCV 320 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~-~~~~d~----~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 320 (434)
.+....-.|.. +.|+++++.|+ ++..++ .|+.-++. .+.. ..+....... ..+
T Consensus 274 ------------------~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~-~~~ 333 (353)
T PF00930_consen 274 ------------------QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDH-YSA 333 (353)
T ss_dssp ------------------ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTT-EEE
T ss_pred ------------------ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCc-eEE
Confidence 11223344544 67888776544 444422 46566666 4443 3333322122 689
Q ss_pred EEcCCCCEEEEee
Q 013873 321 KFSCDASYVISGS 333 (434)
Q Consensus 321 ~~s~~~~~l~s~~ 333 (434)
.|||++++++-..
T Consensus 334 ~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 334 SFSPDGKYYVDTY 346 (353)
T ss_dssp EE-TTSSEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999999887544
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.76 E-value=0.004 Score=56.08 Aligned_cols=214 Identities=14% Similarity=0.157 Sum_probs=116.6
Q ss_pred cCCCCeEEEe---------eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEE
Q 013873 118 STDGRILVSC---------GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDI 187 (434)
Q Consensus 118 ~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i 187 (434)
|||+++++.. +..+.+.++|+.++..... ......+....|+|+|..++.. +++|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-------------~~~~~~~~~~~~sP~g~~~~~v~~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-------------TPPPPKLQDAKWSPDGKYIAFVRDNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-------------S-EETTBSEEEE-SSSTEEEEEETTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-------------cCCccccccceeecCCCeeEEEecCceEE
Confidence 4677766653 2346788999987643211 1115567788999999988766 467999
Q ss_pred EeCCCCcceeeeecC-----------------CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc-------eEE-
Q 013873 188 WNHNRSQPINSFQWG-----------------TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-------RKV- 242 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~-----------------~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~- 242 (434)
++..++.....-... -+.-..+-|+|++..++..--.+..|..+.+...... ..+
T Consensus 68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~ 147 (353)
T PF00930_consen 68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR 147 (353)
T ss_dssp ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence 988776443222111 1123568899999666666666666666655332221 111
Q ss_pred -Eeee--cCceeEEEeeCCCCccceee-e---eCcccCeEEEEEccCCCEEEEE--eCCC---cEEEEeCCCCeeeeEEe
Q 013873 243 -IMRA--NEDCNCYSYDSRKLDEAKCV-H---MGHESAVMDIDYSPTGREFVTG--SYDR---TIRIFQYNGGRSREIYH 310 (434)
Q Consensus 243 -~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~i~~~~~sp~~~~l~~~--~~d~---~i~iwd~~~~~~~~~~~ 310 (434)
...+ +....+.+++.......... . ..-...+..+.|.++++.|+.. +.+. .+.+.|..++.......
T Consensus 148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 1112 23445666777555432211 1 2345678899999999844433 3332 37777887776554443
Q ss_pred ccCCccE---EEEEEc-CCCC-EEEEeeCCCcEEEeecC
Q 013873 311 TKRMQRV---FCVKFS-CDAS-YVISGSDDTNLRLWKAK 344 (434)
Q Consensus 311 ~~~~~~v---~~~~~s-~~~~-~l~s~~~dg~v~vw~~~ 344 (434)
......| ....|. +++. +|.....||.-+||-+.
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD 266 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence 3322332 245554 5554 44455577765555443
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.75 E-value=0.026 Score=53.54 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=90.7
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeec--cCC--CeeEEEEcCCCCeEEEee------CCCcEEEeeCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSG--HQG--AVRGLTVSTDGRILVSCG------TDCTVKLWNVPVATLTDSDDS 149 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~--~v~~i~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~ 149 (434)
..++.++.|+.|.-.|..+|+.+..... +.. .+++--..-++ .++.+. .+|.|.-+|.++++.+-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4567788899999999999998876542 111 11111011134 455443 268999999999887655443
Q ss_pred CCCCCC------------c-------eeEEEecCc-eEEEeeccCCCEEEEeC------------------CeEEEEeCC
Q 013873 150 TDNSSE------------P-------LAVYVWKNS-FWAVDHQWEGDLFATAG------------------AQVDIWNHN 191 (434)
Q Consensus 150 ~~~~~~------------~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------~~i~i~d~~ 191 (434)
...... + ......... -..+++.+...++..+. ..|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 221100 0 000001111 22345555544443322 137777889
Q ss_pred CCcceeeeecCCCceE---------EEEEcCCCC--cEEEEEecCCcEEEEEccCCCcc
Q 013873 192 RSQPINSFQWGTDTVI---------SVRFNPAEP--NVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 192 ~~~~~~~~~~~~~~i~---------~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
+++....++.....+. -+....++. ..++.+..+|.+.+.|-++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9998877765322221 122223443 47889999999999999988764
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.0027 Score=57.32 Aligned_cols=173 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe--ec------cCCCeeEEEEcC-----CC---CeEE
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY--SG------HQGAVRGLTVST-----DG---RILV 125 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~------h~~~v~~i~~~~-----~~---~~l~ 125 (434)
++...+.|++++.|.- .++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+ -.|+
T Consensus 82 ~~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3455899999999866 58999999999999999887776652 11 234688888862 22 3788
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE-EecCceEEEe-ec----------------------cCCCEEEEe
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY-VWKNSFWAVD-HQ----------------------WEGDLFATA 181 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~----------------------~~~~~~~~~ 181 (434)
+|...|.+.+|.+.....- .+. ....... .....+..+. ++ -.+.+++++
T Consensus 160 vGTn~G~v~~fkIlp~~~g-~f~-----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNG-RFS-----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG--EE-----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred EEeCCCCEEEEEEecCCCC-ceE-----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 9999999999987421000 000 0000000 1112222211 10 022355666
Q ss_pred CCeEEEEeCCCCcceeeeecCCCceEEEEEcC----CCCcEEEEEecCCcEEEEEccCCCcceEE
Q 013873 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNP----AEPNVLATTASDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 242 (434)
..+++++...+.+...+..........+.+.+ .+...|++-..+|.|++|.+..-+.+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 67899999988877655542222333344431 23367888899999999999877665544
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00021 Score=65.22 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=67.1
Q ss_pred ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEE-EEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 271 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
...+.-+.|+|.-.++|++..+|.|.+..++ .+.+..+..+. ..++ +++|.|||++||.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC-CccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4467889999999999999999999999988 45555555343 3455 9999999999999999999999999999888
Q ss_pred ccC
Q 013873 350 GVL 352 (434)
Q Consensus 350 ~~~ 352 (434)
..+
T Consensus 98 ~~~ 100 (665)
T KOG4640|consen 98 VSF 100 (665)
T ss_pred ecc
Confidence 763
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.017 Score=50.23 Aligned_cols=207 Identities=10% Similarity=0.076 Sum_probs=113.9
Q ss_pred EEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCc
Q 013873 116 TVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ 194 (434)
Q Consensus 116 ~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 194 (434)
.|.++...|+ +--..+.|.-|+..++. ...+.....+.++..-..+..++++...+.+++..++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--------------~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~ 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK--------------KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGG 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc--------------eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCc
Confidence 3556555333 33445677777765432 22333344445555555666777777777777776555
Q ss_pred ceeeeec-----CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 195 PINSFQW-----GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 195 ~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
.+..+.. .....+.+...|+|. +. .+.... ++ .... .....+.+|.++. ..........
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~-~w-fgt~~~----~~--~~~~------~~~~~G~lyr~~p--~g~~~~l~~~ 160 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGR-IW-FGDMGY----FD--LGKS------EERPTGSLYRVDP--DGGVVRLLDD 160 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCC-EE-EeCCCc----cc--cCcc------ccCCcceEEEEcC--CCCEEEeecC
Confidence 4222221 123455667777763 32 233222 22 1100 0112234455543 1233334445
Q ss_pred cccCeEEEEEccCCCEEEEEeCC-CcEEEEeCCC--C----eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC-cEEEe
Q 013873 270 HESAVMDIDYSPTGREFVTGSYD-RTIRIFQYNG--G----RSREIYHTKRMQRVFCVKFSCDASYVISGSDDT-NLRLW 341 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~--~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~vw 341 (434)
+-..-+.|+||||++.|+.+... +.|.-|++.. + ...........+..-.++...+|.+.+++..+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 55667889999999888777654 7788887752 1 111122222234455678888898876555554 89999
Q ss_pred ecCcccccccCC
Q 013873 342 KAKASEQLGVLH 353 (434)
Q Consensus 342 ~~~~~~~~~~~~ 353 (434)
+.+ ++++..+.
T Consensus 241 ~pd-G~l~~~i~ 251 (307)
T COG3386 241 NPD-GKLLGEIK 251 (307)
T ss_pred CCC-CcEEEEEE
Confidence 998 88877664
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.044 Score=49.86 Aligned_cols=219 Identities=14% Similarity=0.143 Sum_probs=139.8
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLT 144 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~ 144 (434)
.-..++.++.+....++...++.|.+.|..+........-- .....+++++++..+..+.. ++++.+.|..+....
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 34567888888456666666789999998877776665422 25667999999987777655 678888887766432
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCccee-e----eecCCCceEEEEEcCCCC
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPIN-S----FQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~-~----~~~~~~~i~~i~~~~~~~ 216 (434)
.. ......+ ..+++.|+|..+...+ +.+.+.|........ . +.. ......+.+.|++.
T Consensus 154 ~~------------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~ 219 (381)
T COG3391 154 AT------------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGN 219 (381)
T ss_pred EE------------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCC
Confidence 21 1111123 7889999999555544 569999976655442 1 111 23346788999986
Q ss_pred cEEEEEecC--CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC-CC
Q 013873 217 NVLATTASD--RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-DR 293 (434)
Q Consensus 217 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~ 293 (434)
...++...+ +.+...|..+........ ..+.. ....+.++|+|+.+.+... .+
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~-----------------------~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDL-----------------------PVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEecc-----------------------ccccC-CCCceeECCCCCEEEEEecCCC
Confidence 555555544 578777776654433210 00111 3456889999999888744 48
Q ss_pred cEEEEeCCCCeeeeEEeccC--CccEEEEEEcCC
Q 013873 294 TIRIFQYNGGRSREIYHTKR--MQRVFCVKFSCD 325 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~ 325 (434)
.+.+-|..+........... ...+..+++.+.
T Consensus 276 ~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 276 TVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eEEEEeCCCCceeeeecccccccccceeccceee
Confidence 89999988877666553332 123555555543
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.54 E-value=0.048 Score=47.33 Aligned_cols=225 Identities=11% Similarity=0.111 Sum_probs=115.0
Q ss_pred EEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeeccCC-------CeeEEEEcCCCCeEEEeeC--CC
Q 013873 71 CMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGHQG-------AVRGLTVSTDGRILVSCGT--DC 131 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~l~s~~~--dg 131 (434)
.+..+|++ +.+++++ ..-.|.+||..+......+.-... ....+.++.++++++.... --
T Consensus 40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 45678998 6776542 234699999999887776542221 1233566777777665432 35
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCC-CCcceeee----ecCCCce
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHN-RSQPINSF----QWGTDTV 206 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~----~~~~~~i 206 (434)
.|.|-|+...+.. ......+.....-..+++...++++|.+.-..+. .|+..... .....++
T Consensus 119 SVtVVDl~~~kvv-------------~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 119 SVTVVDLAAKKVV-------------GEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEEEETTTTEEE-------------EEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred eEEEEECCCCcee-------------eeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccc
Confidence 6777777665432 2222222222222233444555666776666665 34333111 1111222
Q ss_pred E-EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE----------------------------------Eee------
Q 013873 207 I-SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV----------------------------------IMR------ 245 (434)
Q Consensus 207 ~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~------ 245 (434)
. .-++...+ ..++-.+.+|.|+-.|+........- ...
T Consensus 186 f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 186 FEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 1 22233333 23334566777777666544211100 000
Q ss_pred ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCeeeeEEecc
Q 013873 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTG-SYDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
-.....++.+|.........+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..+++.+.....-
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred cCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 11122455566655544444433 34577899998766 55444 45789999999999988777543
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.00023 Score=56.71 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=64.8
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
.-+++|+.+|.|.+|............ ..+-......+.--.++.+..+++.||.|+
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~-----------------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir 127 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRV-----------------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIR 127 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhh-----------------------hcccccceeccccccccceeEEeccCCcee
Confidence 568899999999999876322111100 001112222233333566889999999999
Q ss_pred EEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe--eCCCcEEEeecCcc
Q 013873 297 IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG--SDDTNLRLWKAKAS 346 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~v~vw~~~~~ 346 (434)
.|++..++.......+...++..+..+..+++++.+ |.|..++.|++..-
T Consensus 128 ~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 128 ACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 999988876655544432445555555555566665 56666666666543
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0032 Score=56.66 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=97.3
Q ss_pred ccCCCEEEEeCC---eEEEEeCCCCcceeeeecCCCceEEEEEcCCCC------cEEEEEecCCcEEEEEccCCCcceEE
Q 013873 172 QWEGDLFATAGA---QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP------NVLATTASDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 172 ~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~ 242 (434)
..+.++++..++ .++-.|+..|+.+.....+.. |.-+.+.|+.. ..-+.|-.|..|.-||+|-.... .+
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence 345555555553 388889999999998888766 77777777542 11235677888999998843321 11
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
. |.... . ........|.+-..+| ++++||.+|.|++||- .+..-.+..++-..+|..+..
T Consensus 420 ~-----------~~q~k------q-y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 420 A-----------VVQSK------Q-YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred e-----------eeecc------c-cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEe
Confidence 1 00000 0 0112234455554444 8999999999999997 554444544555589999999
Q ss_pred cCCCCEEEEeeCCCcEEEeecC
Q 013873 323 SCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 323 s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+.||++|++.+ +..+.+-++.
T Consensus 480 tadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 480 TADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccCcEEEEec-ccEEEEEEEe
Confidence 99999988766 4567666653
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.012 Score=41.73 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=63.0
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
|..+|.+.|++|+.|..|++|+-.. ....+ .....|++++-... ..|+.+-
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei--------------------------~e~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDE--IVAEI--------------------------TETDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCc--EEEEE--------------------------ecccceEEEEEcCC-CEEEEEe
Confidence 4446668899999999999997432 12111 23556777776655 5689999
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CC---CEEEEeeCCCcEEE
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DA---SYVISGSDDTNLRL 340 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~s~~~dg~v~v 340 (434)
.+|+|-+|+-.... ...... ..++++++.. ++ .-|++|=.+|.|-+
T Consensus 61 ~NGTVGvY~~~~Rl--WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 61 ANGTVGVYDRSQRL--WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCEEEEEeCccee--eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 99999999863321 222222 3466666543 32 25788888887743
No 368
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.42 E-value=0.038 Score=44.66 Aligned_cols=224 Identities=11% Similarity=0.159 Sum_probs=122.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeE-EeeccCCCeeEEEEcCCC---CeEEEeeCCCcEEEeeCCCCC--CCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDG---RILVSCGTDCTVKLWNVPVAT--LTDSDDSTDNS 153 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~~---~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~ 153 (434)
.++..--..|.|.-||..+.+... .+.+. ++.++.+--.+ .+.+.++..=.|--||-.... .....
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~------ 99 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL------ 99 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec------
Confidence 566666667888889988755432 23322 23333332222 233444443334446632111 10000
Q ss_pred CCceeEEEecCceEEEeeccCCCEEEEeC-----------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEE
Q 013873 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
-.+.....+.....-..+|+|++++..- +.++.|-. +..+..+...-..-+.++|+.+...+.++-
T Consensus 100 -~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 100 -FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred -cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEc
Confidence 0011111234556667789998865431 22444432 223333333334456788998776677777
Q ss_pred ecCCcEEEEE--ccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 223 ASDRSITLYD--LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 223 ~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+.+-.|.-|| ..++..... -.+++.++.... .....-.+++..+|++.+++-..++|...|.
T Consensus 177 sln~~V~a~dyd~~tG~~snr----------~~i~dlrk~~~~------e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNR----------KVIFDLRKSQPF------ESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred cCceEEeeeecCCCcccccCc----------ceeEEeccCCCc------CCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 7788888888 444433221 123444332111 1112234556678998888888999999999
Q ss_pred CCCeeeeEEeccCCccEEEEEEcC-CCCEEEE
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSC-DASYVIS 331 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s 331 (434)
.+|+.+..+.... ..|++++|-- +-..|++
T Consensus 241 ~tGK~L~eiklPt-~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 241 TTGKILLEIKLPT-PQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCcEEEEEEcCC-CceEEEEecCCCccEEEE
Confidence 9999988886654 7799999953 3344443
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.42 E-value=0.086 Score=47.24 Aligned_cols=242 Identities=13% Similarity=0.103 Sum_probs=102.1
Q ss_pred ceEEeee-CCCcEEEEeCCCC----ceeEEeec---cC----CCeeEEEEcCCCCeEEEeeC------CCcEEEeeCCCC
Q 013873 80 KGFFSGS-MDGDIRLWDIANR----RTVCQYSG---HQ----GAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVA 141 (434)
Q Consensus 80 ~~l~sg~-~dg~i~iwd~~~~----~~~~~~~~---h~----~~v~~i~~~~~~~~l~s~~~------dg~v~iwd~~~~ 141 (434)
++|+..+ ..+.|+|.|+.+. +..+.+.. +. ..-..+.-.|+|..++++-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5555554 7789999998743 33444432 11 11222334578888887622 245667776554
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe----------------------CCeEEEEeCCCCcceeee
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA----------------------GAQVDIWNHNRSQPINSF 199 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~i~i~d~~~~~~~~~~ 199 (434)
............ ..--+.+-+.|..+.+++. +..+.+||+.+.+.++++
T Consensus 168 ~v~g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 168 EVKGRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp -EEEE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred cccceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 332221111000 0112345566666666653 235999999999999998
Q ss_pred ecCCCc--eEEEEE--cCCCCcEEEEEecCCcEEEEEc-cCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 200 QWGTDT--VISVRF--NPAEPNVLATTASDRSITLYDL-RMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 200 ~~~~~~--i~~i~~--~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
...... ...+.| .|....-|+.+...++|..|-- ..+.......+.- ....+--|. +.....-+..-..-|
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i-p~~~v~~~~---lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI-PAKKVEGWI---LPEMLKPFGAVPPLI 314 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE---EE--SS------GGGGGG-EE----
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC-CCcccCccc---ccccccccccCCCce
Confidence 876433 445666 4445445665555666655543 3332211111100 000000000 000111111224568
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEE---ecc---------------CCccEEEEEEcCCCCEEEEeeC
Q 013873 275 MDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIY---HTK---------------RMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~---------------~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
+.|.+|.|.++|..++ .+|.|+.||+......... ..+ -.+...-+..|-||+.|+..++
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999999999987766 5899999999764322221 111 0123467888889998876543
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.046 Score=45.57 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=121.4
Q ss_pred EEEEeCCCCCceEEeeeCCCc-EEEEeCCCCceeEEeeccCCC--eeEEEEcCCCCeEEEeeCC-----CcEEEeeCCCC
Q 013873 70 SCMAKNPNYLKGFFSGSMDGD-IRLWDIANRRTVCQYSGHQGA--VRGLTVSTDGRILVSCGTD-----CTVKLWNVPVA 141 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 141 (434)
..++|+|.-+.-++.+-.-|+ ..++|..+.+...++...++. --.=.|+|||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 346677765555666665555 567888777665554321111 1113589999999876443 78999998743
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEE--------------------eCCCCcceeeee-
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW--------------------NHNRSQPINSFQ- 200 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~--------------------d~~~~~~~~~~~- 200 (434)
- . ..-....+.-.-..+.+.+||..++..+|-|..- |..++..+.+..
T Consensus 151 f-q----------rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 151 F-Q----------RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred c-c----------eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 1 1 1111222233445678889999999888755443 222232222211
Q ss_pred ---cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 201 ---WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 201 ---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.+.-.|..++..+++ .+++.+-..|. ++..+ .+.........+..++. +......-...|-++
T Consensus 220 p~~l~~lSiRHld~g~dg-tvwfgcQy~G~------~~d~p--pLvg~~~~g~~l~~~~~-----pee~~~~~anYigsi 285 (366)
T COG3490 220 PASLRQLSIRHLDIGRDG-TVWFGCQYRGP------RNDLP--PLVGHFRKGEPLEFLDL-----PEEQTAAFANYIGSI 285 (366)
T ss_pred chhhhhcceeeeeeCCCC-cEEEEEEeeCC------CccCC--cceeeccCCCcCcccCC-----CHHHHHHHHhhhhhe
Confidence 122345555555554 22222211110 00000 00000000000000000 000111234567788
Q ss_pred EEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 278 DYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 278 ~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+.+.+..+++..+ ..+...+||..+|..+....... ...++-. ..-+++.+.+|.+.++.
T Consensus 286 A~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 286 AANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceec--cCceEEecCCceEEecc
Confidence 8887555555444 45567899999998765543322 2233332 33355566788888874
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.30 E-value=0.073 Score=51.07 Aligned_cols=224 Identities=14% Similarity=0.146 Sum_probs=115.4
Q ss_pred ceEEeeeCCC------cEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCC------CcEEEeeCCCCCCCC
Q 013873 80 KGFFSGSMDG------DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD------CTVKLWNVPVATLTD 145 (434)
Q Consensus 80 ~~l~sg~~dg------~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 145 (434)
.+++.|+.++ .+..||..++.-.. .+. +...-.+++.. ++...++||.| .++-.||...+....
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 6778888774 58888888764322 222 22233445554 45778888888 346677777665432
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-------eEEEEeCCCCcce--eeeecCCCceEEEEEcCCCC
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-------QVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~ 216 (434)
..... ....... ...-+|.+.+.||. ++..||..+.+-- ..... .........-++
T Consensus 364 ~a~M~--------~~R~~~~----v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g 428 (571)
T KOG4441|consen 364 VAPMN--------TKRSDFG----VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGG 428 (571)
T ss_pred cCCcc--------Cccccce----eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECC
Confidence 11110 0000001 11225566666662 3888988775432 22221 122222222233
Q ss_pred cEEEEEecCCc------EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 217 NVLATTASDRS------ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 217 ~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
.+.++|+.++. +..||..+......- .......... ++. -++...+.||
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-----------------------~M~~~R~~~g-~a~-~~~~iYvvGG 483 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-----------------------PMNTRRSGFG-VAV-LNGKIYVVGG 483 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecC-----------------------Ccccccccce-EEE-ECCEEEEECC
Confidence 78888886653 556666554332110 0000011111 222 2677888888
Q ss_pred CCCc-----EEEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCc-----EEEeecCccc
Q 013873 291 YDRT-----IRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTN-----LRLWKAKASE 347 (434)
Q Consensus 291 ~d~~-----i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~-----v~vw~~~~~~ 347 (434)
.|+. |..||..+.+....-... ..+.+..+.+ ++...++|+.||. |..||..+.+
T Consensus 484 ~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 7763 788998887765443111 1122222222 6777778887764 6666665543
No 372
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.30 E-value=0.045 Score=45.58 Aligned_cols=179 Identities=10% Similarity=0.156 Sum_probs=102.5
Q ss_pred CCChhhhhhhHHHHHHHHhhhhcccccccccc-------CCCCCeEEEEeCCCC-----CceEEeeeCCCcEEEEeCCC-
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALD-------GHRDGISCMAKNPNY-----LKGFFSGSMDGDIRLWDIAN- 98 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~~~~~~~~-----~~~l~sg~~dg~i~iwd~~~- 98 (434)
+.|....+++..+-..+.+.++....+. .+. .-..+|..+.|.+-. ...|++-..+|.++-|-+..
T Consensus 51 WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 51 WSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred ECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence 4455556666666666666666543221 111 124677777776532 23567777788888777532
Q ss_pred ----CceeEEee---ccCCCeeEEEEcCCCCeEEEeeCCCc-----------EEEeeCCCCCCCCCCCCCCCCCCceeEE
Q 013873 99 ----RRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDCT-----------VKLWNVPVATLTDSDDSTDNSSEPLAVY 160 (434)
Q Consensus 99 ----~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~dg~-----------v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (434)
.+..+++. .+...|.++.|+|.-++|++||.... +..|.+
T Consensus 130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi---------------------- 187 (282)
T PF15492_consen 130 TNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI---------------------- 187 (282)
T ss_pred cCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE----------------------
Confidence 22333332 24679999999999888887765322 122222
Q ss_pred EecCceEEEeeccCCCEEEEeCC-------eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 161 VWKNSFWAVDHQWEGDLFATAGA-------QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
+.-.|....+...+. ...+|.+-+.+.........+.|..|..+|+| .+|++...+|.|.+|++
T Consensus 188 --------L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 188 --------LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEI 258 (282)
T ss_pred --------cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEec
Confidence 111122222221111 12233322222111112246789999999999 89999999999999999
Q ss_pred cCCCcceEE
Q 013873 234 RMSSPARKV 242 (434)
Q Consensus 234 ~~~~~~~~~ 242 (434)
..-...+..
T Consensus 259 PsL~~~~~W 267 (282)
T PF15492_consen 259 PSLRLQRSW 267 (282)
T ss_pred Ccchhhccc
Confidence 876555443
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.06 Score=45.24 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=111.4
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc-CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
+.|-...|.++.|+|+. +.|++......-.||=..+|+.+.++.-. -...-.|.|..++++.++--.++.+.++.++.
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 44556679999999998 77777777777778877788888876421 12334578888888888888899999998876
Q ss_pred CCCCCCCCCCCCCCCceeEEEe-cCceEEEeeccCCCEEEEeC-Ce-EEEEeCCCCcce---eeeec-------CCCceE
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAG-AQ-VDIWNHNRSQPI---NSFQW-------GTDTVI 207 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-i~i~d~~~~~~~---~~~~~-------~~~~i~ 207 (434)
.......... .-+...... ..++..++|.+....+..+. .+ +.||.+...... ..... .-..+.
T Consensus 160 ~t~~~~~~~~---~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 160 DTTVISAKVQ---KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CccEEeccce---EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 6433222211 011111222 45778899999877666655 32 555544432211 00001 123577
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
++.|++..+++|+-+.+++.+.-.|....
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 88899877788988888888888887544
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.28 E-value=0.013 Score=57.17 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=95.0
Q ss_pred eeCCCcEEEEeCCCCceeEEeeccCCC-eeEEEEcC-----CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 85 GSMDGDIRLWDIANRRTVCQYSGHQGA-VRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 85 g~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
......|+-.|++.|+.+..+..|... |..++=.. +...-+.|-.+..+..||.+-... ... .....
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v-----~~~~k 572 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLV-----DSQSK 572 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--cee-----ecccc
Confidence 345678999999999999999877654 55443221 123456677788999999875420 000 01122
Q ss_pred EEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
.+.....+.|++-+.+|.+++... |+|++||-...+....+.+-..+|..|..+.+|..+|+|+ +..+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 334566788898888887766554 8999999544444455666678999999999995555444 5678888763
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.098 Score=50.25 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=104.3
Q ss_pred CCCCeEEEEeCCCCCceEEeee------CCC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcE-EE
Q 013873 65 HRDGISCMAKNPNYLKGFFSGS------MDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTV-KL 135 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v-~i 135 (434)
....+...+++|+| ..++... .|+ .|.+++.. +.....+.+ ...+.-.|+|+|..|++......+ ++
T Consensus 348 ~~~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 33478899999999 5544333 233 45555642 232222233 247888999999888877543222 22
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
.+-. ..+.+.+.++..+.... .....|..+.|+|+|
T Consensus 424 ~~~~-----------------------------------------~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG 459 (591)
T PRK13616 424 IRDP-----------------------------------------ATGQLARTPVDASAVAS---RVPGPISELQLSRDG 459 (591)
T ss_pred eccC-----------------------------------------CCceEEEEeccCchhhh---ccCCCcCeEEECCCC
Confidence 2110 11234444554444332 224569999999999
Q ss_pred CcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 216 PNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
..++++. +|.|.+=-+.... -...+ ..+.....+-...+.++.|.+++.++ ++..++.
T Consensus 460 ~RiA~i~--~g~v~Va~Vvr~~~G~~~l------------------~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~ 518 (591)
T PRK13616 460 VRAAMII--GGKVYLAVVEQTEDGQYAL------------------TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPE 518 (591)
T ss_pred CEEEEEE--CCEEEEEEEEeCCCCceee------------------cccEEeecccCCccccceEecCCEEE-EEecCCC
Confidence 6555444 4555552221110 00111 11111112223346789999998854 5554554
Q ss_pred EEEEe--CCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE
Q 013873 295 IRIFQ--YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 295 i~iwd--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v 340 (434)
..+|. +...............++.+++-+++ -|+....+|.+.+
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred CceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 44454 44322211111112356777777763 4556666774443
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.0011 Score=39.07 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=30.6
Q ss_pred CccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 314 ~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
...|.+++|+|...+||.|+.+|.|.++++ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 357999999999999999999999999999 55543
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.0011 Score=39.03 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT 101 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 101 (434)
...|.+++|+|.. .+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence 4579999999998 99999999999999998 5544
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.22 E-value=0.15 Score=49.97 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCC--CcEEEEEecCCcEEEEEccCCCcce
Q 013873 203 TDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPAR 240 (434)
Q Consensus 203 ~~~i~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~ 240 (434)
...|..+.|+|.+ ...|++-.+|+++++||+.......
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 4578899999975 3677788889999999997654433
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.19 E-value=0.068 Score=51.30 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=37.6
Q ss_pred CCCEEEEEeCC------CcEEEEeCCC-CeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCCC--cEEEeecCccc
Q 013873 282 TGREFVTGSYD------RTIRIFQYNG-GRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDT--NLRLWKAKASE 347 (434)
Q Consensus 282 ~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg--~v~vw~~~~~~ 347 (434)
+|+..+.||.+ ..+..||..+ ++......... ......+++ ++++.++||.|| .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56777777754 2467899887 45432221111 112222233 788888999888 66677766654
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.17 E-value=0.098 Score=43.97 Aligned_cols=133 Identities=8% Similarity=0.125 Sum_probs=67.9
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
+....|++..++ .++++--.++.+.++++........... ...+.. .....+...+-.++|+|.+
T Consensus 65 ~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~-------~~~~~l-------~~~~~~N~G~EGla~D~~~ 129 (248)
T PF06977_consen 65 GDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRAD-------VQKISL-------GFPNKGNKGFEGLAYDPKT 129 (248)
T ss_dssp SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEE-------EEEEE----------S---SS--EEEEEETTT
T ss_pred CCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhh-------ceEEec-------ccccCCCcceEEEEEcCCC
Confidence 456778887655 5555554588899998854332211100 000000 0011355678899999988
Q ss_pred CEEEEEeCCCcEEEEeCCC---CeeeeEE-------eccCCccEEEEEEcCC-CCEEEEeeCCCcEEEeecCcccccccC
Q 013873 284 REFVTGSYDRTIRIFQYNG---GRSREIY-------HTKRMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~---~~~~~~~-------~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+.|+.+-...-..+|.+.. ....... .......+.+++++|. +.+++.+..+..|..+| ..|+.+..+
T Consensus 130 ~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 130 NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 8877777777777777654 2211111 1112345789999994 55666677788888888 556655443
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.00085 Score=53.61 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc-cCeEEEEEccCCCEEEEE--eCCC
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE-SAVMDIDYSPTGREFVTG--SYDR 293 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~--~~d~ 293 (434)
.+..+++.||.|+.|++......... ..|+ .++..+..+..+++++.+ |.|.
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~-------------------------g~h~~~~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYV-------------------------GQHNFESGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeee-------------------------ccccCCCcceeEEecCCceEEeeccccch
Confidence 58899999999999998765544322 2344 344444444455555555 5566
Q ss_pred cEEEEeCCC
Q 013873 294 TIRIFQYNG 302 (434)
Q Consensus 294 ~i~iwd~~~ 302 (434)
.++.|++..
T Consensus 170 ~~k~W~ve~ 178 (238)
T KOG2444|consen 170 VLKKWNVEK 178 (238)
T ss_pred hhhhcchhh
Confidence 666666543
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.11 E-value=0.083 Score=46.99 Aligned_cols=160 Identities=13% Similarity=0.210 Sum_probs=92.0
Q ss_pred eEEEEeCCCCcceeeeecC-CCceEEEE---EcCC---CCcEEEEEec----------CCcEEEEEccCC-C---cceEE
Q 013873 184 QVDIWNHNRSQPINSFQWG-TDTVISVR---FNPA---EPNVLATTAS----------DRSITLYDLRMS-S---PARKV 242 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~-~~~i~~i~---~~~~---~~~~l~~~~~----------dg~i~iwd~~~~-~---~~~~~ 242 (434)
.|++.|..+.+.+..+... ...+.+++ +..+ ...+|++|+. .|.|.++++... . ....+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4778888877777665543 23444443 3322 1367777754 288999999884 1 11111
Q ss_pred -----------------EeeecCceeEEEeeCCCCc-cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-C
Q 013873 243 -----------------IMRANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-G 303 (434)
Q Consensus 243 -----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~ 303 (434)
.+.......+++|+..... -...........+.++.. .++++++|.....|.++.++. +
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccC
Confidence 0112333445555544443 111112222335555555 466999999888888875543 2
Q ss_pred e-eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 304 R-SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 304 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
. ............++++.|-++++.++++..+|.+.++....
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 2 33333333346789999987667899999999999998863
No 383
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.051 Score=51.51 Aligned_cols=221 Identities=12% Similarity=0.104 Sum_probs=109.6
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEE
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWA 168 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (434)
-.|+||++ +|+.+..+.-..+.+-.+.|+.+. .|++...||++.+|++-....... ....-.....|..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~---------svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN---------SVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc---------ccccccccCceeE
Confidence 45889986 566666554334477889999775 567779999999999854322111 0111111223444
Q ss_pred EeeccCCCEEEEeCCeEEEEeCCCCcceeeeec---CCCceEEEEEcCCCC--cEEEEEe-cCCcEEEEEccCCCcceEE
Q 013873 169 VDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW---GTDTVISVRFNPAEP--NVLATTA-SDRSITLYDLRMSSPARKV 242 (434)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~ 242 (434)
+.+..+|-.+.+.+|++.+-.-.....+.++.. ....-.|-...+.+. ..++-.. ..| ..++-.....
T Consensus 133 c~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~----- 206 (829)
T KOG2280|consen 133 CRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR----- 206 (829)
T ss_pred EEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-----
Confidence 444457777777777755543322212222221 111112222222211 1111000 000 0011110000
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 322 (434)
.....+......+..+..||+.++|+--..+|.|.+-+.+..+....+..........++|
T Consensus 207 -------------------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~W 267 (829)
T KOG2280|consen 207 -------------------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAW 267 (829)
T ss_pred -------------------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhcee
Confidence 0000111123567789999999999999999999998877665554443222222224444
Q ss_pred cCC--------CCEEEEeeCCCcEEEeecCc
Q 013873 323 SCD--------ASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 323 s~~--------~~~l~s~~~dg~v~vw~~~~ 345 (434)
..+ ..+.+.|-..+.|.+|--.+
T Consensus 268 cgndaVvl~~e~~l~lvgp~gd~V~f~yd~t 298 (829)
T KOG2280|consen 268 CGNDAVVLSWEVNLMLVGPPGDSVQFYYDET 298 (829)
T ss_pred ecCCceEEEEeeeEEEEcCCCCccccccCCC
Confidence 333 23444454445555554433
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.047 Score=45.55 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=92.5
Q ss_pred EeCCCCCceEEeeeC-----CCcEEEEeCCCC-ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe----------
Q 013873 73 AKNPNYLKGFFSGSM-----DGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW---------- 136 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~-----dg~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw---------- 136 (434)
.||||| .+|+..-. -|.|-|||...+ +.+.++..|.-.-..+.|.+||+.++.+. |-|...
T Consensus 120 vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence 589998 77776433 367999998754 45667888888888999999999888763 444443
Q ss_pred ----------eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C---e--EEEEeCCCCcceeee
Q 013873 137 ----------NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A---Q--VDIWNHNRSQPINSF 199 (434)
Q Consensus 137 ----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--i~i~d~~~~~~~~~~ 199 (434)
|..++.++...... .......+.-++..++|.+.+.+. | + -.+=-...++++.-+
T Consensus 197 dsMePSlvlld~atG~liekh~Lp--------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLP--------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred hhcCccEEEEeccccchhhhccCc--------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 22222221111100 001233556677777877766653 1 1 111122334444333
Q ss_pred ec-------CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce
Q 013873 200 QW-------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR 240 (434)
Q Consensus 200 ~~-------~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 240 (434)
.. ....|-+++.+.+...+.+|.-......+||..++....
T Consensus 269 ~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 32 234678888887664455555555567799998876543
No 385
>PHA02713 hypothetical protein; Provisional
Probab=96.99 E-value=0.051 Score=52.16 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=23.2
Q ss_pred CCCEEEEEeCCC--cEEEEeCCCCeeeeEEecc
Q 013873 282 TGREFVTGSYDR--TIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 282 ~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~ 312 (434)
+|+..++||.|| .+..||..+++.......+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 788899999888 7888888887765444433
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.019 Score=56.47 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=65.6
Q ss_pred ceEEeeeCCCcEEEEeCCCC-ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
..++.|+..|.|-..|.... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..+.....+.....+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap----- 174 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP----- 174 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-----
Confidence 56888888899988887653 111222334679999999999999999999999999999887543322222111
Q ss_pred EEEecCceEEEeeccCCCEEEEeCCeEEEEeC
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (434)
...+.-+.+..++..+.+++..-.+|.+
T Consensus 175 ----~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 175 ----VTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred ----cceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 1223334444455566666533335543
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.88 E-value=0.54 Score=46.46 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=49.3
Q ss_pred CCCeEEEEeCCC--CCc---eEEeeeCCCcEEEEe-CCCCceeEEe--e--ccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 66 RDGISCMAKNPN--YLK---GFFSGSMDGDIRLWD-IANRRTVCQY--S--GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 66 ~~~V~~~~~~~~--~~~---~l~sg~~dg~i~iwd-~~~~~~~~~~--~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
...|.|+.++|- +++ +++.|.++..+.+.- +.+...+... . .-...|.-..|-.+..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 568999999975 334 788888777655543 3333332221 1 12234555566667889999999999987
Q ss_pred eeCCCCC
Q 013873 136 WNVPVAT 142 (434)
Q Consensus 136 wd~~~~~ 142 (434)
|.++...
T Consensus 610 fv~d~~t 616 (1096)
T KOG1897|consen 610 FVLDINT 616 (1096)
T ss_pred EEEEccc
Confidence 7654443
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0054 Score=60.01 Aligned_cols=105 Identities=11% Similarity=0.215 Sum_probs=74.4
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
..++.|++.|.+-..|++..-.. + .....-.++|++++|+.+|..++.|-.+|.|.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~--~----------------------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP--L----------------------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVT 155 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch--h----------------------hcCCccCCcceeeEecCCCceeccccCCCcEE
Confidence 46788888899988888754110 0 01113467999999999999999999999999
Q ss_pred EEeCCCCeeeeEEeccC--CccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 297 IFQYNGGRSREIYHTKR--MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+||+..++....+..+. ...|..+.+..++..++++...|. +|+..-.+
T Consensus 156 v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 156 VWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred EEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 99999988777664332 234445555556667888877776 67654333
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.76 E-value=0.42 Score=43.49 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred CcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC-----------------CCE-EE
Q 013873 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-----------------ASY-VI 330 (434)
Q Consensus 269 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~-l~ 330 (434)
.....+.+++.+|++++.|+...=|.|.++|+..+..+..+.+-....+.-+..... ..+ ++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 445568899999999999988888999999999887776664443222221111111 112 33
Q ss_pred EeeCCCcEEEeecCcccccccCCh
Q 013873 331 SGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 331 s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
-+-.-|.|.||.++.|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 466789999999999999887753
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.28 Score=41.20 Aligned_cols=192 Identities=9% Similarity=0.107 Sum_probs=104.2
Q ss_pred CCeEEEEeCCCCCceEEeeeCCC--cEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDG--DIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
.-...+.|..+| .++-+.+.-| .|+.+|+.+++......-.. ----.++...+ +...-.-.++...+||..+.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~- 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLK- 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTE-
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccce-
Confidence 345567786666 6666666655 69999999998776544221 11223444433 333344668899999987653
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC-----CCceEEEEEcCCCC
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG-----TDTVISVRFNPAEP 216 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~ 216 (434)
....+.....-+.++ .++..++.++ ..+.++|..+.+....+... -..++.+.+.. |
T Consensus 122 ------------~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G- 185 (264)
T PF05096_consen 122 ------------KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-G- 185 (264)
T ss_dssp ------------EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-T-
T ss_pred ------------EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-C-
Confidence 333344445556666 3455555554 35999999888776665542 22456677762 4
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee---eeCcccCeEEEEEccCCCEEEEEe
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV---HMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
.+.|-.-....|...|..++.....+-+. ........ ......-.+.||+.|..+.|+..|
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls-------------~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLS-------------GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-H-------------HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhh-------------HhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555555667777777777665544221 11100000 011245688999999776655544
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.031 Score=55.35 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=91.9
Q ss_pred cCceEEEeeccCCCEEEEe---CC-eEEEEeCCCCcce-----eeee------cCCCceEEEEEcCCCCcEEEEEecCCc
Q 013873 163 KNSFWAVDHQWEGDLFATA---GA-QVDIWNHNRSQPI-----NSFQ------WGTDTVISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~---~~-~i~i~d~~~~~~~-----~~~~------~~~~~i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
...+..+...+|+...++. .| .|..||+.+...- .-+. .......++.|+|.-+...++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3455566666675544332 23 4888998753211 1111 123456788999987777888888999
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 307 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 307 (434)
|++..+........- ..-....++++|+|.|+.++.|-..|++.-|...-.....
T Consensus 180 l~V~~~~~~~~~v~s-------------------------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTS-------------------------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred hhhhhhhhhhhhhcc-------------------------cCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 998876543222110 1345678999999999999999999999988654331111
Q ss_pred E--EeccCCccEEEEEEcCCCCEEEE
Q 013873 308 I--YHTKRMQRVFCVKFSCDASYVIS 331 (434)
Q Consensus 308 ~--~~~~~~~~v~~~~~s~~~~~l~s 331 (434)
. ........|.+|+|-....++++
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 1 11112367999999887777765
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.63 E-value=0.068 Score=51.31 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=40.2
Q ss_pred eEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE
Q 013873 274 VMDIDYSPTGREFVTGSYD------------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v 340 (434)
.+.-.|+|+|..|++.... +.+.+.++..+.... .....|..+.|||||..|+... +|.|++
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 6778899998887777533 222222333332221 1125699999999999888765 577777
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.61 E-value=0.047 Score=51.92 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-ccCCCeeEEEEc--CCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVS--TDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~--~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
...+-+.-+.-+ ...++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.++.-.....
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444444443 333333334579999998887544322 357899999996 5889999999999999986533222
Q ss_pred CCCCCCCCCCCCceeEEEe-cCceEEEeeccCCCEEEEeCCeEEEEeCC
Q 013873 144 TDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAGAQVDIWNHN 191 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 191 (434)
........ ....+....+ ..+|.+..|.++|.++++.|+.+.|+|-.
T Consensus 109 ~~~~p~w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred hcCCcccc-eeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 21111110 1112222222 25778889999999999999999999753
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.59 E-value=0.36 Score=40.57 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=110.2
Q ss_pred ceeEEeeccC--CCeeEEEEcCCCCeEEEeeCCC--cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCce--EEEeecc
Q 013873 100 RTVCQYSGHQ--GAVRGLTVSTDGRILVSCGTDC--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF--WAVDHQW 173 (434)
Q Consensus 100 ~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 173 (434)
+.+.++. |. .-...+.|..+|.++-+.|.-| .|+.+|+.+++.... ......+ -.++...
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------~~l~~~~FgEGit~~~ 99 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-------------VPLPPRYFGEGITILG 99 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-------------EE-TTT--EEEEEEET
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------EECCccccceeEEEEC
Confidence 3345554 33 3345677877888888888776 788999988754321 1111111 1233334
Q ss_pred CCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 174 EGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 174 ~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
+.-+.++.- +...+||..+.+.+..+.-. +.-..++. ++.. |+.......|.++|..+.+..+.+.+....
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---- 171 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNG---- 171 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE--CSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETT----
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc--CCCE-EEEECCccceEEECCcccceEEEEEEEECC----
Confidence 444455554 56899999999888888653 44566763 3534 555555678999998887776665432111
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc--------------CCccEE
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK--------------RMQRVF 318 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~v~ 318 (434)
..-..++-+.|- +|...|=.-....|...|..+|+....+... ...-.+
T Consensus 172 ----------------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN 234 (264)
T PF05096_consen 172 ----------------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN 234 (264)
T ss_dssp ----------------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE
T ss_pred ----------------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE
Confidence 112245556664 5655555556677888888888877665110 124578
Q ss_pred EEEEcCCCCEEEEee
Q 013873 319 CVKFSCDASYVISGS 333 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~ 333 (434)
.+||+|....|...+
T Consensus 235 GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 235 GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred eEeEeCCCCEEEEEe
Confidence 999998665544443
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.58 E-value=0.5 Score=46.95 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=47.7
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCC--------eeEEEEcC----------------CCCeEEEeeCCCcEEE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA--------VRGLTVST----------------DGRILVSCGTDCTVKL 135 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~----------------~~~~l~s~~~dg~v~i 135 (434)
..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. ++..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 56788888899999999999998887532210 11223321 3447888889999999
Q ss_pred eeCCCCCCCCC
Q 013873 136 WNVPVATLTDS 146 (434)
Q Consensus 136 wd~~~~~~~~~ 146 (434)
.|..+++....
T Consensus 275 LDA~TGk~~W~ 285 (764)
T TIGR03074 275 LDADTGKLCED 285 (764)
T ss_pred EECCCCCEEEE
Confidence 99998876644
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.29 Score=47.10 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=95.2
Q ss_pred ceEEeeeCC-C-----cEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCCCc-----EEEeeCCCCCCCCC
Q 013873 80 KGFFSGSMD-G-----DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTDCT-----VKLWNVPVATLTDS 146 (434)
Q Consensus 80 ~~l~sg~~d-g-----~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~ 146 (434)
.+.++||.| | ++..||..+.+-.. .+.......... .-+|...++||.||. |-.||..+.+....
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 678888888 3 57788877665222 111111111111 126778888998865 56677666654221
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCcce--eeeecCCCceEEEEEcCCCC
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~ 216 (434)
.... . .....-...-+|.+.+.+| ..+..||..+++-. ..+........ ++.. ++
T Consensus 412 a~m~-----------~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~- 476 (571)
T KOG4441|consen 412 APML-----------T-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG- 476 (571)
T ss_pred CCCC-----------c-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-
Confidence 1100 0 0111112233666677666 24888998776432 22222222222 3333 23
Q ss_pred cEEEEEecCCc-----EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 217 NVLATTASDRS-----ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 217 ~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
.+++.|+.|+. |..||..+.+....- ........+-...+ ++...++|+.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-----------------------~m~~~rs~~g~~~~--~~~ly~vGG~ 531 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVA-----------------------PMTSPRSAVGVVVL--GGKLYAVGGF 531 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcc-----------------------cCccccccccEEEE--CCEEEEEecc
Confidence 78888888873 566776654432210 01111222222222 6677888887
Q ss_pred CCc-----EEEEeCCCCeee
Q 013873 292 DRT-----IRIFQYNGGRSR 306 (434)
Q Consensus 292 d~~-----i~iwd~~~~~~~ 306 (434)
||. |..||..+++..
T Consensus 532 ~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cCccccceeEEcCCCCCcee
Confidence 764 667777665543
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.091 Score=47.78 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=95.8
Q ss_pred EEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC-------eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCC
Q 013873 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR-------ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS 154 (434)
Q Consensus 82 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 154 (434)
|.++..-..++-.|++.|+.+..+.-|.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-.... .+ ..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl-----~~ 421 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL-----AV 421 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee-----ee
Confidence 44555566788889999999999887766 77777777543 2234566888999998733210 00 00
Q ss_pred CceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 155 EPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
....-+.....+.|++-..+|.+++.+ +|+|++||-........+.+-..+|..+..+.+|..+|+| .+..+.+.++
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T--c~tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT--CKTYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe--cccEEEEEEE
Confidence 111122335567788888888766555 4899999984444455667777899999999999655444 4667777776
Q ss_pred c
Q 013873 234 R 234 (434)
Q Consensus 234 ~ 234 (434)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.30 E-value=0.95 Score=42.26 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=86.6
Q ss_pred CCeEEEEeCCCCCceEEeee--CCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC----CCeEEEeeCCCcEEEeeCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD----GRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~v~iwd~~~ 140 (434)
.+|..++|.... ..++|.- .+|.+++= +...+..|. -|..++|.|- ...|++......|.+|.+..
T Consensus 20 HPvhGlaWTDGk-qVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGK-QVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCC-EEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467788887433 5555543 34444432 223344444 4889999984 33555567778999999853
Q ss_pred CCCCCCCCCCCCCCCceeEEEecC----ceEEEeeccCCCEEEEeCC-eE-EEEeCCC--CcceeeeecCCCceEEEEEc
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKN----SFWAVDHQWEGDLFATAGA-QV-DIWNHNR--SQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~i-~i~d~~~--~~~~~~~~~~~~~i~~i~~~ 212 (434)
....... ........... --..+.|+|...+++.-.+ ++ .+++... ......+ ...+.|.|.+|.
T Consensus 92 s~~e~~K------~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 92 STTERNK------LLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred Ccccccc------ceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence 2211000 00111111111 1134678898888776553 34 3344332 2222333 346889999999
Q ss_pred CCCCcEEEEEecCCcEEEEEc
Q 013873 213 PAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~ 233 (434)
.+|.+++++.++.=.-++||-
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecC
Confidence 999777777666666778884
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.24 E-value=0.52 Score=45.37 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=33.6
Q ss_pred ceEEeeeCCC------cEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeCC-----CcEEEeeCCCCCCC
Q 013873 80 KGFFSGSMDG------DIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTD-----CTVKLWNVPVATLT 144 (434)
Q Consensus 80 ~~l~sg~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 144 (434)
.+++.|+.++ .+..||..+.+-... +.........+. -++..++.||.+ ..+..||..+....
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 5666776543 577888776543221 111111122222 256677777765 34667887766543
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.17 E-value=0.49 Score=41.13 Aligned_cols=155 Identities=11% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
-.+.+..+..+++| .+++++.......-||-....-...-......|.++.|.|++.+.+. ...|.|+.=+.......
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 34678888899998 88888776555567774332112222234678999999999876564 48888888772111000
Q ss_pred CCCCCCCCCCCcee-EEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeec---CCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLA-VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW---GTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~ 220 (434)
- ..+.. .....-.+..+++.+++.+.+++++...+.....++.-..... -...++.+.|.+.. .-|+
T Consensus 221 w--------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~ 291 (302)
T PF14870_consen 221 W--------SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV 291 (302)
T ss_dssp E-----------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred c--------ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence 0 00000 0011234678899999999888887666677776665444432 24568889987654 4554
Q ss_pred EEecCCcEEEE
Q 013873 221 TTASDRSITLY 231 (434)
Q Consensus 221 ~~~~dg~i~iw 231 (434)
.+.+|.|--|
T Consensus 292 -lG~~G~ll~~ 301 (302)
T PF14870_consen 292 -LGQDGVLLRY 301 (302)
T ss_dssp -E-STTEEEEE
T ss_pred -ECCCcEEEEe
Confidence 4567776554
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.13 E-value=1 Score=41.09 Aligned_cols=151 Identities=11% Similarity=0.136 Sum_probs=79.3
Q ss_pred CCCCceEEeeeCCCcEEEEeCCCCc-----eeEEeeccCCCeeEEEEcC-----CCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 76 PNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQGAVRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 76 ~~~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
+++...+++|+..|.++||+..... .+.+.+ -..+|..+..-. +...||+ =.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~- 110 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT- 110 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC-
Confidence 4445789999999999999986543 222222 456888777632 2223443 45667888887322111
Q ss_pred CCCCCCCCCCceeEEEec--CceEEEeeccCC-----CEEEE--eCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 146 SDDSTDNSSEPLAVYVWK--NSFWAVDHQWEG-----DLFAT--AGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
............+.|. .....+..-+-| .+++. -+|.+.+|+-+.......+.. ---...+.+.+..
T Consensus 111 --~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t- 186 (418)
T PF14727_consen 111 --VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT- 186 (418)
T ss_pred --cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-
Confidence 0001111112222222 223333333322 23333 357788888765443333322 2222346666655
Q ss_pred cEEEEEecCCcEEEEEc
Q 013873 217 NVLATTASDRSITLYDL 233 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~ 233 (434)
..|++++.+..+..|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 56777777777777764
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.72 Score=39.10 Aligned_cols=172 Identities=11% Similarity=0.111 Sum_probs=94.9
Q ss_pred eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--
Q 013873 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (434)
Q Consensus 105 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (434)
+.+-...+.++.|+|+.+.|++......-.+|=...+.++....... -.....+.+..++.+.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------FSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------cCChhHeEEecCCEEEEEehhc
Confidence 34555669999999999999888887777777666665543322211 11222344555555555544
Q ss_pred CeEEEEeCCCCcce----------eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 183 AQVDIWNHNRSQPI----------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 183 ~~i~i~d~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
..+.++.+.....+ ......+.....++|.|.+ +.|..+-+-.-+.||.+...............
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~---- 224 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDP---- 224 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCc----
Confidence 23555544433211 1111124567889999988 55656666666777766532211111000000
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
.....-.-..|.++.|++ .+.+|+-+..++.+.-.|....
T Consensus 225 -----------~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 225 -----------TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred -----------ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 000000123466788887 4566777777777777877654
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.02 E-value=0.26 Score=47.63 Aligned_cols=164 Identities=13% Similarity=0.241 Sum_probs=96.8
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE------Eee----------------ccCCCeeEEEEcC--C
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC------QYS----------------GHQGAVRGLTVST--D 120 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------~~~----------------~h~~~v~~i~~~~--~ 120 (434)
-.+..+++.= + ++|+.+. .+.|.||+........ .+. .....|+.|.... +
T Consensus 39 fKNNLtalsq---~-n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 39 FKNNLTALSQ---R-NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG 113 (717)
T ss_pred cccceeEEec---C-CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence 3455555543 3 6667665 6789999976432211 110 0112355554433 4
Q ss_pred CCeEEEeeCCCcEEEeeCCCCC-----CCCCCC--CCCCCCCceeEEEecCceEEEeec--cCCCEEEEeCCe--EEEE-
Q 013873 121 GRILVSCGTDCTVKLWNVPVAT-----LTDSDD--STDNSSEPLAVYVWKNSFWAVDHQ--WEGDLFATAGAQ--VDIW- 188 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--i~i~- 188 (434)
...|+.|..||.|.+|.++.-. ...... .......+..........|+++++ ...+++|++++. |.+|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 5689999999999999763211 000000 001223455556667789999998 888888888753 5544
Q ss_pred -eCCCCcce-eeeecCCCceEEEEEcCCC--Cc---EEEEEecCCcEEEEEc
Q 013873 189 -NHNRSQPI-NSFQWGTDTVISVRFNPAE--PN---VLATTASDRSITLYDL 233 (434)
Q Consensus 189 -d~~~~~~~-~~~~~~~~~i~~i~~~~~~--~~---~l~~~~~dg~i~iwd~ 233 (434)
.+...+.. ..-..+...|-+|+|.++. +. .+++++-.|.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44322211 1111256678899998755 22 7778899999999888
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.02 E-value=1.5 Score=41.92 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=113.3
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEE-EEeCCeEEEEeCCCCcceeee
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF-ATAGAQVDIWNHNRSQPINSF 199 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~~~~~ 199 (434)
+..++.++.++.|.-.|..+++..-........... ........-..+++. ++.++ .+.++.+.-+|..+++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~-~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVI-PVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccc-cccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 346777777888888898888766544322110000 000000000011222 23333 344577999999999888765
Q ss_pred ecCCC----ceEE-EEEcCCCCcEEEEEe------cCCcEEEEEccCCCcceEEEeeecCceeEE--Eee-CCCC----c
Q 013873 200 QWGTD----TVIS-VRFNPAEPNVLATTA------SDRSITLYDLRMSSPARKVIMRANEDCNCY--SYD-SRKL----D 261 (434)
Q Consensus 200 ~~~~~----~i~~-i~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~----~ 261 (434)
..... .+++ -.+. ++ . ++++. .+|.|..+|..+++..-++........... ..+ .... .
T Consensus 147 ~~~~~~~~~~~tssP~v~-~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-KG-K-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE-CC-E-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 53211 1111 1111 23 3 44443 268999999998877665433221100000 000 0000 0
Q ss_pred cceeeeeCcccCeE-EEEEccCCCEEEEEeCC-----C-----------cEEEEeCCCCeeeeEEeccCCc--------c
Q 013873 262 EAKCVHMGHESAVM-DIDYSPTGREFVTGSYD-----R-----------TIRIFQYNGGRSREIYHTKRMQ--------R 316 (434)
Q Consensus 262 ~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~~~--------~ 316 (434)
.. .....-.+.+. .+++.|...+++.+... + .|.-.|+++|+..-.+...+.. .
T Consensus 224 ~~-~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PG-DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CC-CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 00 00000111222 34666666666555421 1 5777788899887766443211 1
Q ss_pred EEEEEEcCCCC---EEEEeeCCCcEEEeecCcccccc
Q 013873 317 VFCVKFSCDAS---YVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 317 v~~~~~s~~~~---~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
..-+.+..+|+ .++.++.+|.+++.|..+|+.+.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 12233334676 78899999999999999999873
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.91 E-value=0.46 Score=38.39 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=64.9
Q ss_pred ceEEeeeCCCcEEEEeCC--CCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---C---cEEEe---eCCCC--CCCC-
Q 013873 80 KGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---C---TVKLW---NVPVA--TLTD- 145 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g---~v~iw---d~~~~--~~~~- 145 (434)
..|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|++|+|--.+ . .+|+| ..... ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 334444556789999988 3455666764 4789999999999999987432 2 56664 32210 0000
Q ss_pred ---------CCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeCCeEEEEeCC
Q 013873 146 ---------SDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGAQVDIWNHN 191 (434)
Q Consensus 146 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~ 191 (434)
.........-.+...+...+..+++..| .|+++++.++.+.+|.+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~ 163 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLK 163 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence 0000000011222233344566666666 677888888888888764
No 406
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.89 E-value=2.3 Score=42.93 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC--CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS--SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
......++|+|.....||+....|...+|++... .....+.......+.+ .+|.. ....-..+.|.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-~~d~~-----------e~s~w~rI~W~ 212 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-IFDPE-----------ELSNWKRILWV 212 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-cCCCc-----------ccCcceeeEec
Confidence 4567889999988889999999999999999222 1112222222222322 12211 11344578898
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeee-EEeccCCccEEEEEEcCC
Q 013873 281 PTGREFVTGSYDRTIRIFQYNGGRSRE-IYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 281 p~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~ 325 (434)
++-+.|+.++ ...+.++|+.+..... .........|.++.-+|+
T Consensus 213 ~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 213 SDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 8888888887 4568999998876644 333333456777777765
No 407
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.87 E-value=0.21 Score=46.29 Aligned_cols=115 Identities=13% Similarity=0.223 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcEEEEEecCC----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 206 VISVRFNPAEPNVLATTASDR----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
+....++|++..++++-+..| .++++|+.++......+ .......+.|.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--------------------------~~~~~~~~~W~~ 179 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--------------------------ENPKFSSVSWSD 179 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--------------------------EEEESEEEEECT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--------------------------cccccceEEEeC
Confidence 346788999955555555555 49999998875443221 011112389999
Q ss_pred CCCEEEEEeCCC-----------cEEEEeCCCCeee--eEEeccCCcc-EEEEEEcCCCCEEEEeeC---C-CcEEEeec
Q 013873 282 TGREFVTGSYDR-----------TIRIFQYNGGRSR--EIYHTKRMQR-VFCVKFSCDASYVISGSD---D-TNLRLWKA 343 (434)
Q Consensus 282 ~~~~l~~~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~s~~~~~l~s~~~---d-g~v~vw~~ 343 (434)
+++.|+....+. .|+.|.+.+.... ..+....... ...+..++|+++|+.... + ..+.+.++
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 988877665443 3788888776543 3443333233 668889999999775432 2 34777777
Q ss_pred Ccc
Q 013873 344 KAS 346 (434)
Q Consensus 344 ~~~ 346 (434)
..+
T Consensus 260 ~~~ 262 (414)
T PF02897_consen 260 DDG 262 (414)
T ss_dssp CCT
T ss_pred ccc
Confidence 764
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.86 E-value=1.4 Score=40.12 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=75.6
Q ss_pred CCeEEEEeCCCCCceEEeee-----------CCC-cEEEEeCCC--Cce--eEEeeccCCCeeEEEEcCCCCeEEEeeCC
Q 013873 67 DGISCMAKNPNYLKGFFSGS-----------MDG-DIRLWDIAN--RRT--VCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~-----------~dg-~i~iwd~~~--~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 130 (434)
.....|+|.++| +++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 467789999998 6665532 223 787776543 322 23343333456789999888 444 4444
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCce-eEEE-----ecCceEEEeeccCCCEEEEeC---------------------C
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPL-AVYV-----WKNSFWAVDHQWEGDLFATAG---------------------A 183 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~---------------------~ 183 (434)
...++.|.+....... ....+ ..+. .......+.+.|+|.+.++.+ +
T Consensus 91 ~i~~~~d~~gdg~ad~------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 91 DILFLRDKDGDDKADG------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred eEEEEeCCCCCCCCCC------ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 3333435432211100 00001 0011 123356788889988776554 1
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
.+.-++...++ +..+...-.....++|+|++ .++++-.
T Consensus 165 ~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 165 GLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred eEEEEecCCCe-EEEEecCcCCCccceECCCC-CEEEEcc
Confidence 23444444333 22333223345688999977 5665543
No 409
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.81 E-value=0.2 Score=47.78 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=45.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
..-++++.-+|.| .-++.+..||+|++|++...+...... ...+-..+.|...| |+++..|..+.-|.
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence 4567888889988 889999999999999987654422211 12233345565444 56666677776675
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.80 E-value=0.54 Score=43.78 Aligned_cols=124 Identities=15% Similarity=0.244 Sum_probs=73.6
Q ss_pred CceEEEEEcCCC----CcEEEEEecCCcEEEEEccCCCcceE-EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 204 DTVISVRFNPAE----PNVLATTASDRSITLYDLRMSSPARK-VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 204 ~~i~~i~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
..|..+.|.|-+ +.+|| ......|.+|.+........ .... ..-...+ ...--..++.
T Consensus 57 EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s~~e~~K~l~s----------QtcEi~e------~~pvLpQGCV 119 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPSTTERNKLLMS----------QTCEIRE------PFPVLPQGCV 119 (671)
T ss_pred ceeeeeeecCcccCCCCceEE-EeccceEEEEEeccCccccccceee----------eeeeccC------CcccCCCccc
Confidence 468899998853 34454 55578899999863322111 1000 0000000 0111123578
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecC
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAK 344 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~ 344 (434)
|+|....|++-.....=.++++..............+.|.|.+|.+||+.|+++- ..=.-++||-.
T Consensus 120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 9999888877766655557777655544444444458899999999999877643 33346788743
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.58 E-value=1.3 Score=37.88 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=49.4
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeeeEE-eccCCccEEEEEEcC------CCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 280 SPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSC------DASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 280 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~------~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.++...=+.|..-|.|-+||+... .+..+ ....-..-+.|+..| .+.+|+---.||+|..||..+++.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 333333344555688999998754 44444 333345566777755 5667776567999999999999988777
Q ss_pred Ch
Q 013873 353 HP 354 (434)
Q Consensus 353 ~~ 354 (434)
..
T Consensus 288 ~~ 289 (336)
T TIGR03118 288 LD 289 (336)
T ss_pred cC
Confidence 54
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.55 E-value=0.87 Score=44.91 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=28.0
Q ss_pred cccCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 013873 270 HESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 270 ~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~ 303 (434)
+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 4457888999996 578888899999999999753
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.55 E-value=1.6 Score=38.88 Aligned_cols=263 Identities=13% Similarity=0.075 Sum_probs=118.4
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce---eEEe----eccCCCeeEEEEcCC---CCeEEEeeCC-------
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---VCQY----SGHQGAVRGLTVSTD---GRILVSCGTD------- 130 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~----~~h~~~v~~i~~~~~---~~~l~s~~~d------- 130 (434)
.-+.|+|.|+| .+|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|+.....
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 45789999997 66554 5699999999 44433 2222 123457789999994 2344433321
Q ss_pred --CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe----cCceEEEeeccCCCEEEEeC---------------CeEEEEe
Q 013873 131 --CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW----KNSFWAVDHQWEGDLFATAG---------------AQVDIWN 189 (434)
Q Consensus 131 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d 189 (434)
..|.-|.+...... ............. ...-..+.+.|+|.++++.+ +.|.-.+
T Consensus 80 ~~~~v~r~~~~~~~~~-----~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGD-----LSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp EEEEEEEEEEETTSCE-----EEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred cceeeEEEeccCCccc-----cccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 23444444333000 0000011111111 22345689999997776643 1233333
Q ss_pred CCCCc------------ceeeeecCCCceEEEEEcCCCCcEEEEE-ecCCcEEEEEccCCCcce-EEEe-eecCceeEEE
Q 013873 190 HNRSQ------------PINSFQWGTDTVISVRFNPAEPNVLATT-ASDRSITLYDLRMSSPAR-KVIM-RANEDCNCYS 254 (434)
Q Consensus 190 ~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~-~~~~~~~~~~ 254 (434)
....- ....+...-.....++|+|....++++= +.++.=.|.-+..+.... .... .....+.-..
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 32110 1111222223456788888732444432 222222222222111000 0000 0000000000
Q ss_pred --eeCCCCccceeeeeCcccCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCeeeeE---EeccCCccEEEEEE
Q 013873 255 --YDSRKLDEAKCVHMGHESAVMDIDYSP-------TGREFVTGSYDRTIRIFQYNGGRSREI---YHTKRMQRVFCVKF 322 (434)
Q Consensus 255 --~~~~~~~~~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~ 322 (434)
........+...+. +...+..+.|-. .|.+|++.-..+.|....+..+..... +.......+..+++
T Consensus 235 ~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 00001112333333 345667777754 345666666667888888875533221 22223347999999
Q ss_pred cCCCCEEEEeeCCCcEE
Q 013873 323 SCDASYVISGSDDTNLR 339 (434)
Q Consensus 323 s~~~~~l~s~~~dg~v~ 339 (434)
.|||.+.++.+.+|.|+
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999888888888764
No 414
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.44 Score=48.56 Aligned_cols=172 Identities=12% Similarity=0.248 Sum_probs=103.2
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc--------CCCCeEEEeeC
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS--------TDGRILVSCGT 129 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~--------~~~~~l~s~~~ 129 (434)
++..+. |...=..+-+-|.=+..-+| .|+.+.+|+.+++.....+.+-...|..+..- |.=++++..+.
T Consensus 71 l~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT 147 (1311)
T KOG1900|consen 71 LLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT 147 (1311)
T ss_pred HHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc
Confidence 333443 44444445555542133333 47899999999987777777777777777642 33345555555
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC----CCC---c--------
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH----NRS---Q-------- 194 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~----~~~---~-------- 194 (434)
--.|.++-+.-........... ...........+.++....+|++|.+|... .+|.+ ..+ +
T Consensus 148 ~~ei~ilgV~~~~~~~~~~~f~---~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 148 PVEIVILGVSFDEFTGELSIFN---TSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred cceEEEEEEEeccccCcccccc---cceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCc
Confidence 5567777654333222111111 112233335577888888999999987533 33332 111 0
Q ss_pred ---------ceeeee-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC
Q 013873 195 ---------PINSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (434)
Q Consensus 195 ---------~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 237 (434)
.+..+. .+.++|..+...... +++.+-+..|+|.+||+....
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence 012222 456789999998765 799999999999999998743
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.52 E-value=1.3 Score=37.65 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=83.5
Q ss_pred CeeEEEEcCCCCeEEEee---CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCe--E
Q 013873 111 AVRGLTVSTDGRILVSCG---TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--V 185 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i 185 (434)
.+.+.+++++++.++... ....+.++..... .. .......+..-.|++++.+.+...+. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--------------~~-~~~~g~~l~~PS~d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--------------VR-PVLTGGSLTRPSWDPDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--------------ce-eeccCCccccccccCCCCEEEEEcCCCce
Confidence 688899999998777655 3334555543221 11 11123356667788887777665532 4
Q ss_pred EEE-eCCCCcce-eeeecC--CCceEEEEEcCCCCcEEEEEe--cCCcEEEEEccCCCcc-eEEEeeecCceeEEEeeCC
Q 013873 186 DIW-NHNRSQPI-NSFQWG--TDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPA-RKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 186 ~i~-d~~~~~~~-~~~~~~--~~~i~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 258 (434)
.++ +...+... ..+... ...|..+.++|+|..+.+... .++.|.+--+.....- ...
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~---------------- 153 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR---------------- 153 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----------------
Confidence 444 22233221 111111 128999999999966655552 3466666554322211 000
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
..............++.++|.+++.+++.+...+.
T Consensus 154 -l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 154 -LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred -eccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 01112222234567899999999988776655443
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.49 E-value=3 Score=41.55 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=124.4
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--ccCCCeeEEEEcCC--C----CeEEEeeCCCcEEEeeCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTD--G----RILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~--~----~~l~s~~~dg~v~iwd~~~ 140 (434)
+++...+-+. ..++.++.++.+...++..+. +.... .....|.|+.++|- + ++++.|.++..+.+.-...
T Consensus 490 ~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 490 ITIGVVSANA-SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred eEEEEEeecc-eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 3333333333 445555556666666665554 22221 23467999999973 2 2678887777666554322
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE--EEEeCCCCcceeee--ecCCCceEEEEEcCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV--DIWNHNRSQPINSF--QWGTDTVISVRFNPA 214 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i--~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~ 214 (434)
............ ......+....+..+..++.++- |.+ .++|..+++.-..- .....++.=-.|+..
T Consensus 568 d~~~~~~~~l~~-------~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 568 DLILITHEQLSG-------EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSK 640 (1096)
T ss_pred CcceeeeeccCC-------CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeC
Confidence 211100000000 00112233334444455555543 444 34555555432211 222344444455554
Q ss_pred CCcEEEEEecCCcEEEEEccCC---------Cc---------ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 215 EPNVLATTASDRSITLYDLRMS---------SP---------ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~---------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
+...++++ +|.-..+|..+.. +. ...-.+.....+.+.+.......+.....-.-......
T Consensus 641 ~~t~vfa~-sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prr 719 (1096)
T KOG1897|consen 641 SRTAVFAL-SDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRR 719 (1096)
T ss_pred CceEEEEe-CCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhh
Confidence 43333333 2333334432221 00 00001111122222222222222221111222334566
Q ss_pred EEEccCCCEEEEEeCC--------------CcEEEEeCCCCeeeeEEeccCC---ccEEEEEEcCC-CCEEEEeeC----
Q 013873 277 IDYSPTGREFVTGSYD--------------RTIRIFQYNGGRSREIYHTKRM---QRVFCVKFSCD-ASYVISGSD---- 334 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~-~~~l~s~~~---- 334 (434)
+++.+...++++.+.- ..++++|-++-+.......... ..+.++.|..| +.++++|+.
T Consensus 720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 7777644444444321 1366777666554433322222 24555668777 778888764
Q ss_pred ------CCcEEEeecCcccccccC
Q 013873 335 ------DTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 335 ------dg~v~vw~~~~~~~~~~~ 352 (434)
.|.|.||.+..++.+...
T Consensus 800 de~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred CCCCcccceEEEEEEecCCceeee
Confidence 588999998875555444
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.46 E-value=1.1 Score=38.30 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.+.+.++++++..+.++...++.-.+|-.......... . ....+....|++++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~------------------------~--~g~~l~~PS~d~~g~ 78 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV------------------------L--TGGSLTRPSWDPDGW 78 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee------------------------c--cCCccccccccCCCC
Confidence 68889999999655555533444444444333322221 1 123567788999988
Q ss_pred EEEEEeCCCcEEEEe-CCCCeeeeE-EeccCC-ccEEEEEEcCCCCEEEEee---CCCcEEEeecC
Q 013873 285 EFVTGSYDRTIRIFQ-YNGGRSREI-YHTKRM-QRVFCVKFSCDASYVISGS---DDTNLRLWKAK 344 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd-~~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~l~s~~---~dg~v~vw~~~ 344 (434)
..+....+...+++. ..++..... ...... ..|+.+.+||||..++.-. .++.|.+=-+.
T Consensus 79 ~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 79 VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred EEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 777766666667763 333332222 222211 2899999999999877654 35777776554
No 418
>PHA03098 kelch-like protein; Provisional
Probab=95.44 E-value=1.2 Score=42.95 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=35.2
Q ss_pred CCCEEEEEeCCC--------cEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCccc
Q 013873 282 TGREFVTGSYDR--------TIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 347 (434)
Q Consensus 282 ~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~~ 347 (434)
++..++.||.++ .+.+||..+++......... ......+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 566666666432 38889988776543321111 011122222 67777777754 467788776543
No 419
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.21 E-value=1.8 Score=37.38 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=106.2
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe--------------eccCCCeeEEE--EcCCCCeEEEeeCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY--------------SGHQGAVRGLT--VSTDGRILVSCGTDC 131 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--------------~~h~~~v~~i~--~~~~~~~l~s~~~dg 131 (434)
.|..+...|+- +.|++-+ |+.++++++........- ......+...+ -...+...+.+....
T Consensus 37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 49999999986 5444443 599999998765443310 11223444444 112333444445556
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCC-CceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCC------
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSS-EPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGT------ 203 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~------ 203 (434)
.|.+|........ . ...........+..+.|. +..++.+ .....+.|+.++.....+....
T Consensus 115 ~i~i~~~~~~~~~---------f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~ 183 (275)
T PF00780_consen 115 KILIYEWNDPRNS---------FSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFK 183 (275)
T ss_pred EEEEEEEECCccc---------ccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhh
Confidence 9999888653211 1 234445556777778887 3344444 5668888988765543332111
Q ss_pred ------CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 204 ------DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 204 ------~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
.++..+... ++ .+|++ . |..-.+.|. .+.+.+.. .+ .-...+.++
T Consensus 184 ~~~~~~~~~~~~~~~-~~-e~Ll~-~-~~~g~fv~~-~G~~~r~~-----------------------~i-~W~~~p~~~ 234 (275)
T PF00780_consen 184 SRNSSSKPLGIFQLS-DN-EFLLC-Y-DNIGVFVNK-NGEPSRKS-----------------------TI-QWSSAPQSV 234 (275)
T ss_pred hcccCCCceEEEEeC-Cc-eEEEE-e-cceEEEEcC-CCCcCccc-----------------------EE-EcCCchhEE
Confidence 122223332 22 33332 2 222222333 22222100 01 112244556
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
++ ...+|+..+. +.|.||++.+++++..+...
T Consensus 235 ~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 235 AY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 66 3357777665 55999999999887777543
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.14 E-value=2.1 Score=41.69 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=89.9
Q ss_pred CCCEEEEeCCeEEEEeCCCCccee------eeec----------------CCCceEEEEEcC-CCCcEEEEEecCCcEEE
Q 013873 174 EGDLFATAGAQVDIWNHNRSQPIN------SFQW----------------GTDTVISVRFNP-AEPNVLATTASDRSITL 230 (434)
Q Consensus 174 ~~~~~~~~~~~i~i~d~~~~~~~~------~~~~----------------~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i 230 (434)
...++++.++.|.||+........ .+.. ....|+.|.... .+..+|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 334555667889999875432211 1100 112344444332 23368889999999999
Q ss_pred EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc--cCCCEEEEEeCCCcEEEEeCCCC--eee
Q 013873 231 YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS--PTGREFVTGSYDRTIRIFQYNGG--RSR 306 (434)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~d~~i~iwd~~~~--~~~ 306 (434)
|.+..-....... ....+.. ..+..-.+... ..-....++++++ ...++||+++....|.||-+... +..
T Consensus 129 Yyt~~I~~~i~~~-~~~~~~~----~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~ 202 (717)
T PF08728_consen 129 YYTETIIEAIERF-SEDNDSG----FSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFY 202 (717)
T ss_pred EEHHHHHHHHHhh-ccccccc----cccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccc
Confidence 9864321000000 0000000 00000011111 1234578999998 77888999988888888765432 111
Q ss_pred eEEeccCCccEEEEEEcCCC---C---EEEEeeCCCcEEEeecC
Q 013873 307 EIYHTKRMQRVFCVKFSCDA---S---YVISGSDDTNLRLWKAK 344 (434)
Q Consensus 307 ~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~v~vw~~~ 344 (434)
......+...|.+|+|-++. . .|++++-.|.+.+|++.
T Consensus 203 ~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 203 HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 11111233568889996633 2 78889999999999883
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.95 E-value=0.15 Score=29.09 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCCC--ceEEeeeCCCcEEEEeCCC
Q 013873 67 DGISCMAKNPNYL--KGFFSGSMDGDIRLWDIAN 98 (434)
Q Consensus 67 ~~V~~~~~~~~~~--~~l~sg~~dg~i~iwd~~~ 98 (434)
++|.++.|+|... .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998763 5788887889999999985
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=94.95 E-value=3.4 Score=39.11 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=31.9
Q ss_pred ceEEeeeCCC-----cEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCC--CcEEEeeCCCCC
Q 013873 80 KGFFSGSMDG-----DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD--CTVKLWNVPVAT 142 (434)
Q Consensus 80 ~~l~sg~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d--g~v~iwd~~~~~ 142 (434)
.+++.|+.++ ++..||..++.-.. .+....... +++ .-++...+.||.+ ..+..||..++.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe
Confidence 5667777643 46778877654222 121111111 122 2356677777754 356777765543
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.90 E-value=0.97 Score=43.42 Aligned_cols=112 Identities=10% Similarity=0.190 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc--cCC
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS--PTG 283 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--p~~ 283 (434)
+.-+.-+.-+ ...++.+....+.|||.+........ .+ ...+.|.+++|. |+|
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~-----------------------~f-~~~~~I~dLDWtst~d~ 86 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEE-----------------------SF-SEDDPIRDLDWTSTPDG 86 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEee-----------------------ee-cCCCceeeceeeecCCC
Confidence 3334334333 34444444557999999876533222 11 346788999885 588
Q ss_pred CEEEEEeCCCcEEEEeCC-----CC----eeeeEE--eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 284 REFVTGSYDRTIRIFQYN-----GG----RSREIY--HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~-----~~----~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+.+++.|..+.|.+|.-. .. ..+..+ ......+|.+..|.++|.+++.+| +.+.|++-.
T Consensus 87 qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 87 QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 999999999999998531 11 122222 222235788999999998776553 467887643
No 424
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.89 E-value=2.7 Score=37.64 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=47.0
Q ss_pred eCCCCceeEEeeccCC-----CeeEEEEcCCCCeEEEeeC-CC--cEEEeeCCCCCCCCCCCCCCCCCCceeEEEec-Cc
Q 013873 95 DIANRRTVCQYSGHQG-----AVRGLTVSTDGRILVSCGT-DC--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-NS 165 (434)
Q Consensus 95 d~~~~~~~~~~~~h~~-----~v~~i~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (434)
|..+|..+..+..... ..+.=+|.++|+.|+.++. || .+.+.|+.+++.. ++.... ..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-------------QLTdg~g~~ 82 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-------------QLTDGPGDN 82 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-------------E---SS-B-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-------------ECccCCCCC
Confidence 5567766666653332 2223356778876665544 55 4556677666432 222211 11
Q ss_pred eEEEeeccCCCEEE-Ee-CCeEEEEeCCCCcceeeeecCCCceEEEEEc
Q 013873 166 FWAVDHQWEGDLFA-TA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 166 ~~~~~~~~~~~~~~-~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 212 (434)
.....++++...++ .. +..+.-.|+.+.+....+......+-...|.
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEE
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccccee
Confidence 11234456666554 33 3578888999887766666666666556664
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.82 E-value=0.2 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCC--cEEEEEecCCcEEEEEccCC
Q 013873 204 DTVISVRFNPAEP--NVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 204 ~~i~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 236 (434)
+.+.++.|+|... .+|+.+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3578999998664 68888888899999999853
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.82 E-value=3 Score=37.90 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=78.3
Q ss_pred ceEEEeeccCCCEEEEeC-------------C-eEEEEeCCC--Cc--ceeeeecCCCceEEEEEcCCCCcEEEEEecCC
Q 013873 165 SFWAVDHQWEGDLFATAG-------------A-QVDIWNHNR--SQ--PINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-------------~-~i~i~d~~~--~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 226 (434)
....+++.++|.++++.. + .|.+++-.. ++ ....+...-.....+++.+++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eCCCe
Confidence 345678899999888742 2 577776433 22 223343334456788888866 444 34333
Q ss_pred cEEEEEccCCCc---ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC-----------
Q 013873 227 SITLYDLRMSSP---ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD----------- 292 (434)
Q Consensus 227 ~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------- 292 (434)
..++.|...... ....+...-. . ....+......++|.|||.+.++-+..
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~--------~--------~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFG--------G--------QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccC--------C--------CCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence 233334432111 1111100000 0 000123457789999999876655421
Q ss_pred --------CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 293 --------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 293 --------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
|.|.-+|..++.. ..+.... .....++|+|+|.++++-.
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCcccccCceEEEEecCCCeE-EEEecCc-CCCccceECCCCCEEEEcc
Confidence 4455566655443 3333332 4457899999999877644
No 427
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.73 E-value=1.2 Score=40.76 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred cCCCEEEEeCC---eEEEEeCCCCcceeeeecCCCceEEEEEcCCCC------cEEEEEecCCcEEEEEccCCCcceEEE
Q 013873 173 WEGDLFATAGA---QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP------NVLATTASDRSITLYDLRMSSPARKVI 243 (434)
Q Consensus 173 ~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 243 (434)
.+..++...++ .++-.|+..|+.+.....|... -+.|.|... ..-++|-++..|.-.|.+... .++.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--NKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--NKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC--Ccee
Confidence 34445555443 3777888899988888876654 566776431 112345556665555655433 1111
Q ss_pred eeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 244 MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
.. .....++.-.||. ...++|+++..|.|++||--.-.....+ +.-...|-.
T Consensus 553 v~-----------------------esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~lG~aIk~ 608 (776)
T COG5167 553 VV-----------------------ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGLGDAIKH 608 (776)
T ss_pred ee-----------------------eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-cccccceee
Confidence 10 1111122222222 3458999999999999996543332223 333367889
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+..+.+|.++++.+.. .+.+-|+.
T Consensus 609 idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 609 IDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eEeecCCcEEEEeecc-eEEEEecc
Confidence 9999999998877754 67776654
No 428
>PRK10115 protease 2; Provisional
Probab=94.68 E-value=5.1 Score=39.84 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCCceEEee-eCCC----cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC------CcEEE
Q 013873 67 DGISCMAKNPNYLKGFFSG-SMDG----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD------CTVKL 135 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg-~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d------g~v~i 135 (434)
-.+..+.++|+| .+|+.+ +.+| .|++.|+.++..+...-... -..++|.+|++.|+.+..+ ..|..
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 357778899998 666644 3333 58999998886432221111 1458999998866655432 35666
Q ss_pred eeCCCC
Q 013873 136 WNVPVA 141 (434)
Q Consensus 136 wd~~~~ 141 (434)
+++.++
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 777655
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.29 E-value=2.5 Score=34.64 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=80.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeC----------CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE-eeCCCcEE
Q 013873 66 RDGISCMAKNPNYLKGFFSGSM----------DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCTVK 134 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg~v~ 134 (434)
....+.-..+|+| ++ +.|.. .|.++.|-.. ++ +..+...-+--+.++|+.+.+.+.. -+.+-+|.
T Consensus 108 knR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC-CC-ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 3455556677887 55 33322 1344444332 11 1122222233356888877665554 45566787
Q ss_pred Eee--CCCCCCCCCCCCCCCCC-CceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 135 LWN--VPVATLTDSDDSTDNSS-EPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 135 iwd--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
-|| ..++.+.+......... ++... ..--.++...+|.+.++. +++|...|..+++.+..+......|+|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~----~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFES----LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCC----CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 788 55555433211110000 00000 001123334466665554 4679999999999999999999999999
Q ss_pred EEcCCCCcEEEEE
Q 013873 210 RFNPAEPNVLATT 222 (434)
Q Consensus 210 ~~~~~~~~~l~~~ 222 (434)
+|--..-.+|.+.
T Consensus 260 cFgGkn~d~~yvT 272 (310)
T KOG4499|consen 260 CFGGKNLDILYVT 272 (310)
T ss_pred EecCCCccEEEEE
Confidence 9975432444443
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=1.3 Score=40.74 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
.|..+..++.|..++-+|.+|.+.++-
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 466777889999999999998665543
No 431
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=3 Score=35.47 Aligned_cols=161 Identities=9% Similarity=0.058 Sum_probs=89.1
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 188 (434)
.+-+..+.++ +++...+..+.-++|.|+.+.... .....+....-..++..+.+-.+++.-+.-..++
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP----------~~~~~lnt~gyaygv~vsGn~aYVadlddgfLiv 153 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSP----------TLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIV 153 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCc----------ceeccccCCceEEEEEecCCEEEEeeccCcEEEE
Confidence 4556677776 457777788888999999876432 1111222222223344443333333333446677
Q ss_pred eCCCCc---ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 189 NHNRSQ---PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 189 d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
|+.+.+ ....+.........++.+ | ++...+..|+-+.+.|+........+-
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~---------------------- 208 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIG---------------------- 208 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEE----------------------
Confidence 765542 333333333334556665 3 566677788999999987665433220
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
.......+.++..+++-.+++..+ --+.+-|..+.+....+
T Consensus 209 -~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~ 249 (370)
T COG5276 209 -SYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVF 249 (370)
T ss_pred -EEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEe
Confidence 011223677787777655555443 33667777665544444
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.17 E-value=0.47 Score=39.28 Aligned_cols=70 Identities=4% Similarity=0.077 Sum_probs=51.7
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEE-------ec------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIY-------HT------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
+..++.+|++-+.+|.+++||+.+++..... .. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999988754322 11 2336788999998888777654 68899998765
Q ss_pred cccc
Q 013873 346 SEQL 349 (434)
Q Consensus 346 ~~~~ 349 (434)
+.=+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5433
No 433
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.16 E-value=3 Score=35.11 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=110.9
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-eEEEEe
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWN 189 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d 189 (434)
.-..++-.|||..-+++...|.|--.|-.+++. ..........-..+...|||..-++.++ -|.-.|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev------------~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d 130 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV------------ETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD 130 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce------------EEEecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence 344566778887777777777666666665532 1222222334455667788887777766 466666
Q ss_pred CCCCccee---eeecCCCceEEEEEcCCCCcEEEEEecC---------CcEEEEEccCCCcceEEEeeecCceeEEEeeC
Q 013873 190 HNRSQPIN---SFQWGTDTVISVRFNPAEPNVLATTASD---------RSITLYDLRMSSPARKVIMRANEDCNCYSYDS 257 (434)
Q Consensus 190 ~~~~~~~~---~~~~~~~~i~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++.+... .............|.+.| ++-+++... +.|++|+.
T Consensus 131 pkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpa------------------------ 185 (353)
T COG4257 131 PKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPA------------------------ 185 (353)
T ss_pred CcccceEEeecccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeecc------------------------
Confidence 65543221 112234567778888888 666666521 22333332
Q ss_pred CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCCC
Q 013873 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
......+.|+..|+|...++.-.++.|-..|..++.......... ......+--+|.|+.-++-...|
T Consensus 186 -----------PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g 254 (353)
T COG4257 186 -----------PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG 254 (353)
T ss_pred -----------CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCc
Confidence 223456778899999988887777888888877663322221111 13344555566777777766667
Q ss_pred cEEEeecCcc
Q 013873 337 NLRLWKAKAS 346 (434)
Q Consensus 337 ~v~vw~~~~~ 346 (434)
.+..+|....
T Consensus 255 ~l~rfdPs~~ 264 (353)
T COG4257 255 SLHRFDPSVT 264 (353)
T ss_pred eeeEeCcccc
Confidence 7777776543
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=94.15 E-value=4.8 Score=38.17 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCcc
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKAS 346 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~ 346 (434)
+|+..+.|+ .+.+||..+++......... ......+. -+++..+.||.+ ..+..||..++
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 566666664 57789988776543321111 11222222 267777888754 34667776654
No 435
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=2.7 Score=33.81 Aligned_cols=180 Identities=10% Similarity=0.098 Sum_probs=85.5
Q ss_pred ceEEeeeCC--CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc
Q 013873 80 KGFFSGSMD--GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (434)
Q Consensus 80 ~~l~sg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (434)
.++.+.+.- ..|++||+.+++.+.+-.-....+..=-...-+.++. -.-.+|.-..+|.++.+....+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-------- 128 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-------- 128 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--------
Confidence 555555443 3699999999988766442212222111111222222 22457888888887765443322
Q ss_pred eeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecC-----CCceEEEEEcCCCCcEEEEEecCCcEE
Q 013873 157 LAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWG-----TDTVISVRFNPAEPNVLATTASDRSIT 229 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~~l~~~~~dg~i~ 229 (434)
..+.-+.++. ++..+..++| .+..-|..+.....++... -..++.+.|-. | .+.+-.-.+..|.
T Consensus 129 -----y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd-G-~lyANVw~t~~I~ 199 (262)
T COG3823 129 -----YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD-G-ELYANVWQTTRIA 199 (262)
T ss_pred -----cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec-c-EEEEeeeeecceE
Confidence 2222233332 3333444444 3666666654433333221 12233344432 2 3333333333344
Q ss_pred EEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEE
Q 013873 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTG 289 (434)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~ 289 (434)
..|..+++...- +|.............|....+.+++.|++. ++++|
T Consensus 200 rI~p~sGrV~~w-------------idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPDSGRVVAW-------------IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCCCCcEEEE-------------EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 444444333222 222233233333335667788999999874 45554
No 436
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.86 E-value=4.8 Score=37.43 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=25.4
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
..|.+++..+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999975
No 437
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=4 Score=42.23 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=45.5
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+..++.+..+....+. +.+..-+.+-+|+.........+...+ ..+++++..++++..||.+.+||+..+..
T Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNG------QLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhccccc------ccCccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555444333 334445677777766554444443322 11178899999999999999999998866
No 438
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.62 E-value=3.3 Score=33.66 Aligned_cols=158 Identities=14% Similarity=0.230 Sum_probs=82.6
Q ss_pred EEEEeCCeEEEEeCC--CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC------cEEEE-EccCC----CcceEEE
Q 013873 177 LFATAGAQVDIWNHN--RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR------SITLY-DLRMS----SPARKVI 243 (434)
Q Consensus 177 ~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg------~i~iw-d~~~~----~~~~~~~ 243 (434)
++++++..|.+|++. ..++...|.. -+.|..+.++..| ++++|--.+. .+++| +.+.. .+....
T Consensus 32 fva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR- 108 (215)
T PF14761_consen 32 FVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR- 108 (215)
T ss_pred EEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE-
Confidence 445666789999988 3455666665 4789999999988 7887754332 45554 22221 222211
Q ss_pred eeecCceeEEEeeCCCCc-cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-e---eEEe------cc
Q 013873 244 MRANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-R---EIYH------TK 312 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~---~~~~------~~ 312 (434)
..+..-.. -...... ....+-.+-..++.+++..|-..-|+.|+ ++.+.+|.+..... . ..+. .+
T Consensus 109 iaG~~v~~---~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 109 IAGHRVTP---SFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred Eccccccc---CCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 11100000 0000001 11112223456778888888433455555 57789998764432 1 1110 11
Q ss_pred C-CccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 313 R-MQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 313 ~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+ .-....+++. +.|+|..+ +-.+++..+.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1 1224455554 55777765 4567777653
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.58 E-value=0.072 Score=51.63 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=47.1
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--CCceeEEe-----eccCCCeeEEEEcC---CCCeEEEeeCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQY-----SGHQGAVRGLTVST---DGRILVSCGTD 130 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~-----~~h~~~v~~i~~~~---~~~~l~s~~~d 130 (434)
-++|..+.|-.+.|-......++ -.-|.+.|||+. .|+....+ ..-...+.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 35778888988888543212222 334778899875 33332222 22233445556655 55677777778
Q ss_pred CcEEEeeCCCC
Q 013873 131 CTVKLWNVPVA 141 (434)
Q Consensus 131 g~v~iwd~~~~ 141 (434)
+.+++.+++..
T Consensus 205 ~~i~lL~~~ra 215 (1283)
T KOG1916|consen 205 GEIRLLNINRA 215 (1283)
T ss_pred CceeEeeechH
Confidence 88888776543
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=2.5 Score=43.47 Aligned_cols=157 Identities=13% Similarity=0.227 Sum_probs=92.7
Q ss_pred cCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEc--------CCCCcEEEEEecCCcEEEEEccCCCcceEEEe
Q 013873 173 WEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN--------PAEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (434)
Q Consensus 173 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 244 (434)
.-++.-++.++++.+|+.+++.....+.+-...|..+..- |.=.++|+.+ .--.|.++-+...........
T Consensus 89 eI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 89 EIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCcccc
Confidence 3456677888999999999988887777777777776542 2222334433 334455554432221111000
Q ss_pred eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CC---e-ee------------
Q 013873 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN--GG---R-SR------------ 306 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~--~~---~-~~------------ 306 (434)
+.. ..........|+++....+|+.|++|- ||.|+-.-.. .+ + +.
T Consensus 168 ----------f~~------~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 168 ----------FNT------SFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred ----------ccc------ceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 000 011112345788999888998777766 5543322111 10 0 00
Q ss_pred ----eEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 307 ----EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 307 ----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
..+...+..+|..+........+.+-+..|.|.+|++....
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 01112334689999999888899999999999999998743
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.24 E-value=0.38 Score=43.16 Aligned_cols=245 Identities=11% Similarity=0.043 Sum_probs=121.1
Q ss_pred CCceEEeeeCCCcEEEEeCCCCc----eeEEeeccCCCeeEEEEcCCC--------CeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 78 YLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGAVRGLTVSTDG--------RILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 78 ~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~--------~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
|...++.|..||.+.+....-.. +-..|... -.-++..+.| ++.+....+....+++.......-
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g---~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPG---LEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCC---CCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Confidence 44788899999999888643110 11111110 1111222222 233444555555555543222111
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcce-eeeecC-CC----ceE-EEEEcCCCCc
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPI-NSFQWG-TD----TVI-SVRFNPAEPN 217 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~-~~~~~~-~~----~i~-~i~~~~~~~~ 217 (434)
....................+..+-..|+|+.+..-. .++.++++.+.... .++... .+ .|+ .+.... |+.
T Consensus 203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~ 281 (733)
T COG4590 203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGF 281 (733)
T ss_pred hcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-Cce
Confidence 1111111111111222334566677889999887766 45888887654221 111110 11 122 111122 346
Q ss_pred EEEEEecCCcEEEE-EccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 218 VLATTASDRSITLY-DLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 218 ~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
-+++++.||.|.-| |.+.... ..+.. ...+.-...++..+.-..+.+-+++-...|++.
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~-p~l~h-------------------~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~ 341 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQ-PHLNH-------------------IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQ 341 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCC-Cccee-------------------eeccccCcccceeeccccccceEEEEcCCCcee
Confidence 67788999998877 4443322 11100 000001112232222222334577777788888
Q ss_pred EEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 297 IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
++.....+.+..-.. ...+.-+++||++.++++- +.|.++++.+++...-
T Consensus 342 ~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 342 SFYSTSEKLLLFERA--YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeecccCcceehhhh--hcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 776554443322211 1456778999999999875 4678999998876543
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.03 E-value=0.11 Score=50.50 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=47.4
Q ss_pred CCCeEEEEeCC---CCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEE-----------EcCCCCeEEEeeCCC
Q 013873 66 RDGISCMAKNP---NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLT-----------VSTDGRILVSCGTDC 131 (434)
Q Consensus 66 ~~~V~~~~~~~---~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~-----------~~~~~~~l~s~~~dg 131 (434)
...+.-+.|.| .. .++..+..+|+|++.++++... ..+.+|...+..++ .+|||+.|+.+..||
T Consensus 180 gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 33445555555 33 6677778889999888765433 34455777666655 467788888888888
Q ss_pred cEEEeeC
Q 013873 132 TVKLWNV 138 (434)
Q Consensus 132 ~v~iwd~ 138 (434)
.++.|.+
T Consensus 258 ~v~f~Qi 264 (1283)
T KOG1916|consen 258 SVGFYQI 264 (1283)
T ss_pred ccceeee
Confidence 8877775
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.92 E-value=0.77 Score=38.01 Aligned_cols=64 Identities=9% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCCCceEEeeeCCCcEEEEeCCCCceeEE-------ee-------ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQ-------YS-------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 76 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
..+ .+|++-+.+|.+++||+.+++.+.. +. .....|..+.+..+|.-+++-+ +|....|+.+-+
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 345 7799999999999999998865432 11 3557788899998888777654 588999997644
No 444
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.91 E-value=6 Score=34.59 Aligned_cols=117 Identities=8% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
..+.+..+..++++ .+++++.......-||.-...-.. ........|..|.|+|
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~-------------------------~~r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQP-------------------------HNRNSSRRIQSMGFSP 196 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EE-------------------------EE--SSS-EEEEEE-T
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceE-------------------------EccCccceehhceecC
Confidence 34678888888888 677666544444566643211110 1123457899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC-CCeeeeE-Eec--cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 282 TGREFVTGSYDRTIRIFQYN-GGRSREI-YHT--KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~-~~~~~~~-~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
++.+.+.+ ..|.|++=+.. ....... ... ...-.+..++|.+++...++|+ .|.+. ...+.|+
T Consensus 197 ~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGk 263 (302)
T PF14870_consen 197 DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGK 263 (302)
T ss_dssp TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTS
T ss_pred CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCc
Confidence 98876655 78888887722 1111111 111 1223488999999988777665 44443 3344444
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.55 E-value=1.9 Score=39.39 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC---C-C------------
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST---D-G------------ 121 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~---~-~------------ 121 (434)
....|......+.+++.+|.+ .+.|+...-|.|.++|+.++..++.++|-.+.- +.|.. . .
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCC
Confidence 344566677789999999998 888888788999999999998888877654432 22211 1 0
Q ss_pred ----C-eEEEeeCCCcEEEeeCCCC
Q 013873 122 ----R-ILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 122 ----~-~l~s~~~dg~v~iwd~~~~ 141 (434)
. +++-+-.-|.|-||.+..+
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCC
Confidence 1 2334566789999998776
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=4.2 Score=32.75 Aligned_cols=151 Identities=10% Similarity=0.099 Sum_probs=80.5
Q ss_pred CCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCc
Q 013873 174 EGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANED 249 (434)
Q Consensus 174 ~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 249 (434)
+|.++.+.+ +.|+.||+.+++.+.+-......+..=-...-+..+....-.+|.-..+|.++.+....+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~------ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS------ 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc------
Confidence 444555544 4599999999887765543322221111111122344445567777788877766655441
Q ss_pred eeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE----eccCCccEEEEEEcCC
Q 013873 250 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY----HTKRMQRVFCVKFSCD 325 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~s~~ 325 (434)
-++.-+.++. |++-|+.+....++++-|..+-...... .......++-+.|- |
T Consensus 129 --------------------y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d 185 (262)
T COG3823 129 --------------------YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D 185 (262)
T ss_pred --------------------cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c
Confidence 2333344443 6666777766677777776543332222 22111233444454 5
Q ss_pred CCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 326 ASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 326 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
|...|-.=.+..|...+.++|+.+..+.
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~wid 213 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWID 213 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEE
Confidence 5554444445566666777777665554
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.40 E-value=1.7 Score=39.88 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=83.4
Q ss_pred EEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCC--------CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC
Q 013873 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG--------RILVSCGTDCTVKLWNVPVATLTDSDDSTDNS 153 (434)
Q Consensus 82 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (434)
+..|+.-..++--|++.|+.+-.+.-|... -+.|.|.. +.|+ |-.+..|.-.|.+.... .+.
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gN--Ki~----- 552 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGN--KIK----- 552 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCC--cee-----
Confidence 345666677888899999999888877665 46777742 2344 44444444444332210 000
Q ss_pred CCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEE
Q 013873 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd 232 (434)
.....-+.....+.+.....+|-+.+++. |+|++||--.......+.+-...|..+..+.+|..+|++| ...+.+-|
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d 630 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTD 630 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEe
Confidence 00111122234444444445554444333 7899999765555555666677899999999997666665 35677777
Q ss_pred cc
Q 013873 233 LR 234 (434)
Q Consensus 233 ~~ 234 (434)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 65
No 448
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.09 E-value=9.3 Score=34.89 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=86.0
Q ss_pred CCCeEEEee-CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe-----c---CceEEEeeccCCCEEEEeC--------
Q 013873 120 DGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW-----K---NSFWAVDHQWEGDLFATAG-------- 182 (434)
Q Consensus 120 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~-------- 182 (434)
+.++|+..+ ..+.|.|.|+.+.... ......... + ..-..+..-|+|.+++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~---------P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRK---------PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCC---------CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 345677666 6789999998754321 111111111 0 1112334456887777642
Q ss_pred CeEEEEeCCCCcceeeeecC---CCceEEEEEcCCCCcEEEEEec--------------------CCcEEEEEccCCCcc
Q 013873 183 AQVDIWNHNRSQPINSFQWG---TDTVISVRFNPAEPNVLATTAS--------------------DRSITLYDLRMSSPA 239 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~ 239 (434)
|.+.++|-++.+........ ...-..+-|.|.. +.+++... ..++.+||+...+..
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 34888888887766655542 2345567778866 67766532 346888888887776
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc--CCCE-EEEEeCCCcEEEEeC-CCCeeee--EEecc-
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP--TGRE-FVTGSYDRTIRIFQY-NGGRSRE--IYHTK- 312 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~~~~-l~~~~~d~~i~iwd~-~~~~~~~--~~~~~- 312 (434)
+.+-+. ........+.|.. +..+ ++.+...+.|..|-- ..+.... .+...
T Consensus 236 Q~idLg-----------------------~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 236 QTIDLG-----------------------EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp EEEES------------------------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred eEEecC-----------------------CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 665321 1111233454543 3344 333334445544433 3333211 11100
Q ss_pred ---------C--------CccEEEEEEcCCCCEEEEee-CCCcEEEeecCcc
Q 013873 313 ---------R--------MQRVFCVKFSCDASYVISGS-DDTNLRLWKAKAS 346 (434)
Q Consensus 313 ---------~--------~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~ 346 (434)
. ..-|+.+.+|.|.++|..++ .+|.|+.||+...
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0 13478999999999998777 5899999999753
No 449
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=1.5 Score=44.33 Aligned_cols=135 Identities=10% Similarity=-0.061 Sum_probs=79.3
Q ss_pred CeEEEEeCCCCCceEEe--eeCCCcEEEEeCCCCcee-----EEeec------cCCCeeEEEEcCCC-CeEEEeeCCCcE
Q 013873 68 GISCMAKNPNYLKGFFS--GSMDGDIRLWDIANRRTV-----CQYSG------HQGAVRGLTVSTDG-RILVSCGTDCTV 133 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~-~~l~s~~~dg~v 133 (434)
.|..+...+|+ ...++ .+.+-.|..||+++-..- .-|.. ...-..++.|+|.- ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45566666665 33332 233346888998754221 11111 22345677888842 346677889999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC--cceeeeec-CCCceEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS--QPINSFQW-GTDTVIS 208 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~--~~~~~~~~-~~~~i~~ 208 (434)
++..+.... ............++++|+|.|..++.+. |.+.-|-..-. ..+..... ....|.+
T Consensus 181 ~V~~~~~~~------------~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 181 RVKSTKQLA------------QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred hhhhhhhhh------------hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeE
Confidence 888775432 2222344556788999999999999886 55655543221 11111111 1468999
Q ss_pred EEEcCCC
Q 013873 209 VRFNPAE 215 (434)
Q Consensus 209 i~~~~~~ 215 (434)
|+|....
T Consensus 249 v~Wl~t~ 255 (1405)
T KOG3630|consen 249 VTWLSTQ 255 (1405)
T ss_pred EEEecce
Confidence 9998755
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=91.87 E-value=9.1 Score=34.26 Aligned_cols=153 Identities=9% Similarity=0.112 Sum_probs=82.9
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEE-EeCCCCceeEEe-eccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRL-WDIANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
...+.++.+.|++ .++++|. .|.+.. +| ..++.-... ..-...++++.+.++++.+++ +..|.+.+=..+.+..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCC-eEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 4568899999986 6665554 565543 22 222222222 233467899999999886665 4567765322333211
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee---cCCCceEEEEEcCCCCcEEE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~ 220 (434)
-.... .+. ......+..+.+.+++.+++++..-..+.....++.-.... .-......+.|..++ ..++
T Consensus 248 W~~~~------~~~--~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~ 318 (334)
T PRK13684 248 WSKPI------IPE--ITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV 318 (334)
T ss_pred ccccc------CCc--cccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCC-ceEE
Confidence 00000 000 00112456778888888777766544445555544433332 112356777777655 4444
Q ss_pred EEecCCcEEEEE
Q 013873 221 TTASDRSITLYD 232 (434)
Q Consensus 221 ~~~~dg~i~iwd 232 (434)
.+..|.|--|+
T Consensus 319 -~G~~G~il~~~ 329 (334)
T PRK13684 319 -LGQRGVLLRYV 329 (334)
T ss_pred -ECCCceEEEec
Confidence 56678877765
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.69 E-value=16 Score=36.76 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=91.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCee-------------EEEEcC--CCCeEEEeeC----------CCcEE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR-------------GLTVST--DGRILVSCGT----------DCTVK 134 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~--~~~~l~s~~~----------dg~v~ 134 (434)
..++.++.|+.+.-.|..+|+....+.. .+.|. .+.-.| .+..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4788888999999999999998877642 22221 111112 2335666643 68899
Q ss_pred EeeCCCCCCCCCCCCCCCCCC----ceeEEE--ecCceEEEeeccCCCEEEEe--------------------CCeEEEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSE----PLAVYV--WKNSFWAVDHQWEGDLFATA--------------------GAQVDIW 188 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------------~~~i~i~ 188 (434)
-+|..+++..-.......... .-..+. ..+.....++.++..++... .+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999999987755432211000 001111 11111233444433333221 1347777
Q ss_pred eCCCCcceeeeecCCCceEE---------EEEcC-CC--CcEEEEEecCCcEEEEEccCCCcceE
Q 013873 189 NHNRSQPINSFQWGTDTVIS---------VRFNP-AE--PNVLATTASDRSITLYDLRMSSPARK 241 (434)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~---------i~~~~-~~--~~~l~~~~~dg~i~iwd~~~~~~~~~ 241 (434)
|.++++....++.....+.. +.+.- ++ ...++.++.+|.+.++|-++++++..
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 88889888777652221111 12221 33 13788899999999999988876654
No 452
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.68 E-value=8.5 Score=33.54 Aligned_cols=174 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred ceEEEeeccCCCEEEEeCC--------------eEEEEeCCCCcceeeeec------CCCceEEEEEcCCCC-----cEE
Q 013873 165 SFWAVDHQWEGDLFATAGA--------------QVDIWNHNRSQPINSFQW------GTDTVISVRFNPAEP-----NVL 219 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~------~~~~i~~i~~~~~~~-----~~l 219 (434)
.+..+.....+.+-+.-.| .|.+||+.+.+.+..+.. ..+.+..+.+..... ..+
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc---CCCEEEEEeCCCcEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP---TGREFVTGSYDRTIR 296 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~d~~i~ 296 (434)
++=+..+-|.++|+.+++.-+........+.....+.... ........+.+++.+| +|++|+-+...+ -+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g------~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ 154 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGG------ESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RK 154 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETT------EEEEETTSEEEEEE-TTSTTS-EEEEEETT--SE
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccC------ceEecCCCccccccCCCCCCccEEEEEeCCC-Cc
Q ss_pred EEeCCCCeeeeEEeccCC-------------ccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 297 IFQYNGGRSREIYHTKRM-------------QRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
+|.+.+..+...-..... +....++.+++|.++++--..+.|..|+...
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred EEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.60 E-value=4.4 Score=30.12 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=72.5
Q ss_pred EEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-----CCCEEEEeC-CeEEE
Q 013873 114 GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-----EGDLFATAG-AQVDI 187 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~i~i 187 (434)
.-.|......|++++.-|.|.|++.......... ....+........+.+++..+ +...|+.+. ..+..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc-----ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 3456666667888889999999987644322111 245667777777787776554 345666666 56999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCC--CcEEEEEecCCcEEEEEccCC
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAE--PNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 236 (434)
||......+..-.. .+.+.++.+-.-+ +.-++..+.+..|.-||....
T Consensus 78 YDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 78 YDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 99988776654433 3556666653211 122444444567777765543
No 454
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.57 E-value=1.7 Score=34.49 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=48.3
Q ss_pred eEEEeeccCCCEEEEeCCeEEEEeCCCCc--------------------ceeeeec---------------------CCC
Q 013873 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQ--------------------PINSFQW---------------------GTD 204 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--------------------~~~~~~~---------------------~~~ 204 (434)
..+++|+.||.+.++.+..|.|.+..... .+..+.. ...
T Consensus 7 ~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred CcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Confidence 35789999999999999999998332211 0000100 012
Q ss_pred ceEEEEEcCCC-----CcEEEEEecCCcEEEEEccC
Q 013873 205 TVISVRFNPAE-----PNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 205 ~i~~i~~~~~~-----~~~l~~~~~dg~i~iwd~~~ 235 (434)
.+..++|+|.| .-+|++.+.+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 35788999999999998654
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.41 E-value=5.6 Score=35.55 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC--
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-- 282 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-- 282 (434)
....|+|.|++ .+|+ +...|.|.+++ ..+.....+... ..+..........++++|+
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~-~~g~~~~~v~~~------------------~~v~~~~~~gllgia~~p~f~ 61 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVD-KDGSLKTPVADL------------------PEVFADGERGLLGIAFHPDFA 61 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEE-TTTEECEEEEE-------------------TTTBTSTTBSEEEEEE-TTCC
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEe-CCCcCcceeccc------------------ccccccccCCcccceeccccC
Confidence 35789999997 6665 46699999998 333221111100 0112244567899999994
Q ss_pred -CCEEEEEeC-C--------CcEEEEeCCCC--e-----eee-EEec--cCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 283 -GREFVTGSY-D--------RTIRIFQYNGG--R-----SRE-IYHT--KRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 283 -~~~l~~~~~-d--------~~i~iwd~~~~--~-----~~~-~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
..+|+.... . ..|.-|.+..+ . .+. .... ........|.|.|||.+.++.+..+.
T Consensus 62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 233333322 1 23444544433 1 111 1111 12234567999999977776655443
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.36 E-value=7.5 Score=36.16 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 315 QRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3489999999889999999999999999974
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.09 E-value=2.6 Score=40.95 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=55.4
Q ss_pred eeEEEEcCCCCeEEEeeCCCc-----EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeE
Q 013873 112 VRGLTVSTDGRILVSCGTDCT-----VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQV 185 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i 185 (434)
-..++|-|.|..+++-+.||. |.++.-+.-+. +...............+|.-....++.+. +.+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH----------Gef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~ 318 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH----------GEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLL 318 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCccc----------CCccccCCchhhhhhhhhhHHHHHHHHhhcceE
Confidence 345899999999999876542 44443221110 01101111122333444554444555444 458
Q ss_pred EEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
.+|-..+-.........-..+.-+.|+|...+.+...+
T Consensus 319 ~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 319 KLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred EEEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 88877665444333334455777899998766555443
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.02 E-value=19 Score=36.38 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=50.9
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE------------------eccCCccEEEEEEcCCCCEEEE
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY------------------HTKRMQRVFCVKFSCDASYVIS 331 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~v~~~~~s~~~~~l~s 331 (434)
....|.+++...-+.+++..-.||+|.++|-.+.+..... .......+..++|||++..++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3466888888778889999999999999997765433222 0011123446889999999999
Q ss_pred eeCCCcEE
Q 013873 332 GSDDTNLR 339 (434)
Q Consensus 332 ~~~dg~v~ 339 (434)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99999965
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.62 E-value=2.7 Score=28.86 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=29.4
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
+..+|.+.-||..+++....+..- .-.+.|++++|+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC--CccCeEEEcCCCCEEEEE
Confidence 445788999999998876555443 356899999999977765
No 460
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.47 E-value=25 Score=36.87 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=22.7
Q ss_pred cCCCCCeEEEEeCCC--CCceE----EeeeCCCcEEEEeCC
Q 013873 63 DGHRDGISCMAKNPN--YLKGF----FSGSMDGDIRLWDIA 97 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~--~~~~l----~sg~~dg~i~iwd~~ 97 (434)
.||...|.|....-. +..+| ++.+-||++.|=|.+
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 789999988766432 21222 245678998887754
No 461
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.40 E-value=14 Score=33.95 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=82.3
Q ss_pred CceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCC---------
Q 013873 79 LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS--------- 149 (434)
Q Consensus 79 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------- 149 (434)
..++..-+.||.+.+|+-+.....+.+.. ---.-.+.|.+....|++++.+..+.-|....-........
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 36678889999999999766554444443 12223467888888899999998998887633211111000
Q ss_pred -CCCCCCceeEEEecCceEEEeecc----CCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEE-E------cCCCCc
Q 013873 150 -TDNSSEPLAVYVWKNSFWAVDHQW----EGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR-F------NPAEPN 217 (434)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~-~------~~~~~~ 217 (434)
......+...+.....+..+.... ...+++-+...+...+.. |......+. .....|++ + .+....
T Consensus 224 ~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~ 301 (418)
T PF14727_consen 224 SSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRL 301 (418)
T ss_pred cccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCce
Confidence 111223333444444444443322 334555566667776653 433333222 22222222 1 222223
Q ss_pred EEEEEecCCcEEEEE
Q 013873 218 VLATTASDRSITLYD 232 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd 232 (434)
.++.++.++.+.+|.
T Consensus 302 ~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYE 316 (418)
T ss_pred EEEEEecCCeEEEEe
Confidence 577888888888885
No 462
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.07 E-value=11 Score=32.01 Aligned_cols=234 Identities=14% Similarity=0.107 Sum_probs=129.9
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
..-..++-.||| ..-+++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.....
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~- 138 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR- 138 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-
Confidence 345567778887 778888888888888888887765544455556677788888766653332 33333433322110
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
-++.............|.+.|.+-.++. +.+.+|+... ...-..|+..|+|
T Consensus 139 --------f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdG 200 (353)
T COG4257 139 --------FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDG 200 (353)
T ss_pred --------eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCC
Confidence 1111122234556677888888777764 1255555432 2335678888988
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
.+.++.-.+..|...|.......... .-......-..+--+|.|..-++-...+.+
T Consensus 201 -svwyaslagnaiaridp~~~~aev~p-----------------------~P~~~~~gsRriwsdpig~~wittwg~g~l 256 (353)
T COG4257 201 -SVWYASLAGNAIARIDPFAGHAEVVP-----------------------QPNALKAGSRRIWSDPIGRAWITTWGTGSL 256 (353)
T ss_pred -cEEEEeccccceEEcccccCCcceec-----------------------CCCcccccccccccCccCcEEEeccCCcee
Confidence 45555555666776666554221110 000112223345556778877777777888
Q ss_pred EEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 296 RIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
.-||........--.......-.++.....++.-.+--..|.|.-+|.++
T Consensus 257 ~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 88877654432222222223344555555555444433445555555544
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.92 E-value=2.2 Score=24.05 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=23.5
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCeeeeEEecc
Q 013873 281 PTGREFVTGS-YDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 281 p~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
|++++|+++. .++.|.++|..+++....+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666654 5789999999888777766553
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.84 E-value=2 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCCCceEEeeeCCCcEEEEeCCCCceeEEeec
Q 013873 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG 107 (434)
Q Consensus 76 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 107 (434)
|++..++++...+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45634455555688999999998888777764
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.82 E-value=0.048 Score=49.07 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=92.9
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~ 146 (434)
.-....|-|.+.+ ++.++.+..+..||- .++....+. .++....++|..++..++ .+-..+.+.+||+.+......
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 3344567777634 788888888999994 445444443 455667788988777544 456678999999976532111
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 224 (434)
... ....-.-+.|++.+..++.+. +.+.|++..+.+.+.....|...++++++.+.+ +.+.++.
T Consensus 113 E~g------------g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dc 178 (615)
T KOG2247|consen 113 ESG------------GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDC 178 (615)
T ss_pred hcc------------CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCc
Confidence 100 011111145666665555554 679999988877776666688899999999965 4555665
Q ss_pred CCcEEE
Q 013873 225 DRSITL 230 (434)
Q Consensus 225 dg~i~i 230 (434)
|..+.+
T Consensus 179 d~~L~v 184 (615)
T KOG2247|consen 179 DNTLSV 184 (615)
T ss_pred HHHHHH
Confidence 554443
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=11 Score=34.36 Aligned_cols=105 Identities=8% Similarity=0.139 Sum_probs=65.4
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
..+.|.++.|++|. ..+++--.|..|.+++.....+..... ......+..|.+..|+.
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~---------------------~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT---------------------QECKTKNANILGFCWTS 122 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH---------------------HHhccCcceeEEEEEec
Confidence 35689999999988 899999999999999875433322111 01112344688889986
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 330 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 330 (434)
+ .-+|..+..| +.+|-....+........+...|.-..|.++.+.++
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 5 4566665444 777766544322222223335677777777766543
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=17 Score=33.85 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=24.5
Q ss_pred CeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCeee
Q 013873 273 AVMDIDYSPTG---REFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 273 ~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
.+..++|+|+. ..|..-+.|+.|++||+.....+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 35567888865 45777777999999998765543
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.60 E-value=8.2 Score=35.18 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=81.9
Q ss_pred EEEEeCCCCCceEEeeeCCCcEEEEeCCCC---ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
+.+-|...+ ..|+ +...|.+.=|-.... -++..-....++|.+|.|++|.+.||+--.|++|.+++....+....
T Consensus 26 ngvFfDDaN-kqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDAN-KQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCc-ceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 344455444 3333 333455656654432 12222233567999999999999999999999999999743321100
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCC-CcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
...........+..+.|+.+..+....+..+.+|.... ...+...+.+...|.-..|.++..-.|++.+
T Consensus 104 --------~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 104 --------YTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred --------HHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 00011112234667777777666555555566665433 2334445556667777788887644444433
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.27 E-value=1.5 Score=42.37 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=44.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC----CeeeeEE--ec-------------------cCCccEEEEEEcC----CCCEEEE
Q 013873 281 PTGREFVTGSYDRTIRIFQYNG----GRSREIY--HT-------------------KRMQRVFCVKFSC----DASYVIS 331 (434)
Q Consensus 281 p~~~~l~~~~~d~~i~iwd~~~----~~~~~~~--~~-------------------~~~~~v~~~~~s~----~~~~l~s 331 (434)
++...++.+..||.+....... +...... .. .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888899888877654 1111111 00 0112355566666 7789999
Q ss_pred eeCCCcEEEeecCcccccccC
Q 013873 332 GSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 332 ~~~dg~v~vw~~~~~~~~~~~ 352 (434)
-+.|+.+++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.22 E-value=17 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 335 (434)
+.+||..+++......... ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~-~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ-GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC-CccceEEEEeCCEEEEEcCCC
Confidence 4578887765432221111 111112333367777777753
No 471
>PRK10115 protease 2; Provisional
Probab=88.79 E-value=27 Score=34.88 Aligned_cols=69 Identities=6% Similarity=-0.056 Sum_probs=44.3
Q ss_pred eEEEeeccCCCEEEEeC---C----eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC-----CcEEEEEc
Q 013873 166 FWAVDHQWEGDLFATAG---A----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDL 233 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~iwd~ 233 (434)
+..+.++|++++++.+- | ++++.|+.++..+........ ..++|.+++..++++...+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 34567889999877653 2 389999988864432222111 4599999886666665433 35777777
Q ss_pred cCC
Q 013873 234 RMS 236 (434)
Q Consensus 234 ~~~ 236 (434)
.+.
T Consensus 207 gt~ 209 (686)
T PRK10115 207 GTP 209 (686)
T ss_pred CCC
Confidence 665
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.75 E-value=20 Score=33.39 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
-.....|+|.|++ .+|++--..|.|++++....
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCC
Confidence 4557899999988 66665544699999875543
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.34 E-value=20 Score=32.86 Aligned_cols=147 Identities=10% Similarity=0.114 Sum_probs=79.9
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEE-EEeCCCCcee--EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIR-LWDIANRRTV--CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~-iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
...+..++++ .+++.|.. |.+. -|| .+... ..-......++++.|.+++..++++ .+|.+. |....+..-.
T Consensus 241 f~~v~~~~dG-~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 4445667776 65665554 4433 344 23221 1112234578899999998877654 566653 3333331100
Q ss_pred CCCCCCCCCCceeEEE---ecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee---cCCCceEEEEEcCCCCcEE
Q 013873 146 SDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l 219 (434)
. ....... ....+..+.+.+++..++++.+-+.+.....++.-.... .-....+.+.|.+++ ..+
T Consensus 315 ~--------~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~g~ 385 (398)
T PLN00033 315 D--------FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK-KGF 385 (398)
T ss_pred c--------cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC-ceE
Confidence 0 0111111 123477888888888888887655555555555433332 123467889987755 444
Q ss_pred EEEecCCcEEEE
Q 013873 220 ATTASDRSITLY 231 (434)
Q Consensus 220 ~~~~~dg~i~iw 231 (434)
..+.+|.|.-|
T Consensus 386 -~~G~~G~il~~ 396 (398)
T PLN00033 386 -VLGNDGVLLRY 396 (398)
T ss_pred -EEeCCcEEEEe
Confidence 45667776554
No 474
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=88.16 E-value=5.3 Score=39.58 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCcEEEEeCCCCceeEEeeccCCCeeEEEEc-CCC--------CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCce
Q 013873 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-TDG--------RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~-~~~--------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (434)
.|+.+.+||..++..-+.+..-...|..+..- |.. ..|+. .....+.++-+.-.......... ....
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~v-AT~~e~~ilgvs~d~~T~Els~f---nTgl 175 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFV-ATEKEVMILGVSKDTKTGELSLF---NTGL 175 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhh-hhhheeeEEEEEeccccceeEEE---ecce
Confidence 47789999999776555544433444444431 211 11222 12223334332211110000000 0122
Q ss_pred eEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCC--------c-------------ce---eeeecCCCceEEEEEcC
Q 013873 158 AVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS--------Q-------------PI---NSFQWGTDTVISVRFNP 213 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--------~-------------~~---~~~~~~~~~i~~i~~~~ 213 (434)
........+.++..+.+|+++.+|..++.+|.+.-. + .+ ..+..+...|..++...
T Consensus 176 ~vsvqGinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 176 VVSVQGINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred EEeccCceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence 223334567788888899999999887888865311 0 01 11123456677777776
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcce
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPAR 240 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~ 240 (434)
.. .+|.+-+....|+-|.+.......
T Consensus 256 sR-g~ly~Lr~kS~Vray~itkngl~g 281 (1263)
T COG5308 256 SR-GLLYVLRKKSAVRAYSITKNGLVG 281 (1263)
T ss_pred cc-cceeeecccceeeeEeeecccccc
Confidence 55 577777778888888877655444
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.84 E-value=9.4 Score=28.44 Aligned_cols=70 Identities=7% Similarity=0.076 Sum_probs=46.3
Q ss_pred EEEEeCCCCCceEEeeeCCCcEEEEeCCCC--------ceeEEeeccCCCeeEEEEcC-----CCCeEEEeeCCCcEEEe
Q 013873 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANR--------RTVCQYSGHQGAVRGLTVST-----DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~v~iw 136 (434)
..-.|.... .-|++++..|.|.|++.... ..+..+. -...|++|+--+ ....|+.|+ ...+..|
T Consensus 2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred eEEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 344566666 56888888899999987643 2334443 456777776543 344666665 4589999
Q ss_pred eCCCCC
Q 013873 137 NVPVAT 142 (434)
Q Consensus 137 d~~~~~ 142 (434)
|+....
T Consensus 79 DV~~N~ 84 (136)
T PF14781_consen 79 DVENNS 84 (136)
T ss_pred EcccCc
Confidence 997764
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.59 E-value=2.5 Score=23.49 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=21.8
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCC--CcEEEE
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMD--GDIRLW 94 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~d--g~i~iw 94 (434)
+......-.+..|+|||..+++++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456778899999995556666666 766666
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.23 E-value=6.2 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.8
Q ss_pred CeeEEEEcCCC------CeEEEeeCCCcEEEeeCCC
Q 013873 111 AVRGLTVSTDG------RILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 111 ~v~~i~~~~~~------~~l~s~~~dg~v~iwd~~~ 140 (434)
.|.+++|||.| -+|++.+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999943 3788889999999998653
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.00 E-value=5.1 Score=36.37 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=48.8
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE-Ee-eccCC----Cee-EEEEcCCCCeEEEee
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-QY-SGHQG----AVR-GLTVSTDGRILVSCG 128 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~-~~h~~----~v~-~i~~~~~~~~l~s~~ 128 (434)
++.++.+..-...|..+-..||| +.|+.-+. .++.++++.+..... .+ ....+ .|+ .+.....|.-|++++
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 33445566667788899999998 76665544 678899887653211 11 11111 122 222234566788888
Q ss_pred CCCcEEEee
Q 013873 129 TDCTVKLWN 137 (434)
Q Consensus 129 ~dg~v~iwd 137 (434)
.||-|.-|=
T Consensus 288 ~dG~vsQWF 296 (733)
T COG4590 288 EDGLVSQWF 296 (733)
T ss_pred CCCceeeee
Confidence 899888773
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=38 Score=34.47 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=40.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeE---E------e--eccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVC---Q------Y--SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~---~------~--~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
+.++.|+.||.+.+|.+.....-. . + .-+..+|..+...+.-..+++ -.|+.+.++++...+
T Consensus 27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 27 NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 789999999999999986542110 0 1 113467777766665444444 446778888876554
No 480
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.41 E-value=45 Score=34.80 Aligned_cols=154 Identities=14% Similarity=0.216 Sum_probs=72.3
Q ss_pred CeEEEeeC---------CCcEEEeeCCCCCCCCCCCC--CCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC
Q 013873 122 RILVSCGT---------DCTVKLWNVPVATLTDSDDS--TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (434)
Q Consensus 122 ~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (434)
.+|++|.. -|.+.|+|+-.- +..... .....+.+..-..++.+..++ .-+|.++.+.+..|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeV--VPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEV--VPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSSQGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEe--cCCCCCCcccceeeeeehhhcccceEEEE-EeccEEEEccCcEEEEEEe
Confidence 47777642 388999997321 000000 001111122222334443332 3366666666778999999
Q ss_pred CCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCc
Q 013873 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGH 270 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (434)
+....+.-+..-.-++.-.....-. ++++.|.--..|.+.-..... .++.+.+ ....
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~fqeep--~rlsL~s--------------------rd~~ 1180 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLGFQEEP--YRLSLLS--------------------RDFE 1180 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEEEccCc--eEEEEee--------------------cCCc
Confidence 5433221111111111111111112 455555555555555443221 1111100 0112
Q ss_pred ccCeEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 013873 271 ESAVMDIDYSPTGR--EFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 271 ~~~i~~~~~sp~~~--~l~~~~~d~~i~iwd~~ 301 (434)
.-.++++.|--||. +++++..|+.|++|-..
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 33566777766665 57888899999998654
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.07 E-value=0.14 Score=46.28 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=78.8
Q ss_pred EEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE---eCCeEEEEeC
Q 013873 114 GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT---AGAQVDIWNH 190 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~d~ 190 (434)
...|-+.+.-++.++.+-.+..||-..... ...........++|..++..++. ..+.+.+||+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~--------------le~n~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVI--------------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhccee--------------cccCCchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 456778777788888888888888543221 11122233345566666654433 3467999999
Q ss_pred CCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCc
Q 013873 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGH 270 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (434)
++...-.--.+....-.-+.|++.. ..++.|...|.+.+++..+....... ..|
T Consensus 105 n~eytqqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~-------------------------Gkh 158 (615)
T KOG2247|consen 105 NSEYTQQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVM-------------------------GKH 158 (615)
T ss_pred hhhhHHHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhh-------------------------ccc
Confidence 7653221111111111226788766 56777888999999998765443322 127
Q ss_pred ccCeEEEEEccCCC
Q 013873 271 ESAVMDIDYSPTGR 284 (434)
Q Consensus 271 ~~~i~~~~~sp~~~ 284 (434)
...++++++.+.+.
T Consensus 159 ~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDY 172 (615)
T ss_pred ccceeEEEecccce
Confidence 77788888887654
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.91 E-value=39 Score=33.54 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.9
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
-...|.+.+|+.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 4567888999999987777777788888764
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.67 E-value=16 Score=35.76 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 188 (434)
...++++.-+|.++-++.+..||.|.+|+........ ......+-..+.+...|.+.++++..+.-|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-------------i~~~~~p~~nlv~tnhgl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-------------ICEEAKPKENLVFTNHGLVTATSDRRALAW 80 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-------------hhhhcCCccceeeeccceEEEeccchhhee
Confidence 4457788888999999999999999999985443211 111112223344555666667766666556
Q ss_pred eCCCCcceeeeec---CCCceEEEEEcCCCCcEEEEEecCCcEEEEE
Q 013873 189 NHNRSQPINSFQW---GTDTVISVRFNPAEPNVLATTASDRSITLYD 232 (434)
Q Consensus 189 d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd 232 (434)
.-+ |-....+.- ......++...|...+. +|..-|-|.-+|
T Consensus 81 ~~d-gvvqqqfdyndqsekefss~~cdptaqnv--vgtlcggv~q~d 124 (1636)
T KOG3616|consen 81 KED-GVVQQQFDYNDQSEKEFSSILCDPTAQNV--VGTLCGGVEQFD 124 (1636)
T ss_pred ecc-CcchhhccccchhhhhccceecCchhhhh--hhhhccceeeeh
Confidence 432 211111111 12234455566655333 344445555555
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.62 E-value=17 Score=31.46 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=40.0
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee------CCCcEEEeeCCCCCC
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG------TDCTVKLWNVPVATL 143 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~------~dg~v~iwd~~~~~~ 143 (434)
..|++||..+.+-...-.+-.+.|+++.|..+.+.++.|. ....+..||..+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 4699999887665544445667899999987666666663 356788899877654
No 485
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.17 E-value=21 Score=36.35 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCCC-----CceEEeeeCCCcEEEEeCCCCceeEE
Q 013873 66 RDGISCMAKNPNY-----LKGFFSGSMDGDIRLWDIANRRTVCQ 104 (434)
Q Consensus 66 ~~~V~~~~~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~~~~ 104 (434)
+..|.|+++.++. .++++.|+.|++++++.+.....+..
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ 625 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQP 625 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEE
Confidence 3567777777653 24578888888888887765444443
No 486
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.11 E-value=41 Score=33.11 Aligned_cols=159 Identities=13% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE--e--eccCCCeeEEEEcCCCCeEEEeeCCCcEE-EeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--Y--SGHQGAVRGLTVSTDGRILVSCGTDCTVK-LWNVPV 140 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~--~~h~~~v~~i~~~~~~~~l~s~~~dg~v~-iwd~~~ 140 (434)
...+-.+.|+.+ .-|++...+|++.+|++... .+.. . ......|..+.+..+|-.+++. +|.+. +-+...
T Consensus 83 ~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 83 HGELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE 157 (829)
T ss_pred CCCeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc
Confidence 348889999988 56888899999999997533 2222 1 2223345555555566444433 34443 333322
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeCC----eEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGA----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
...-.-...+...... ..+.+.-.+ ....++.-+- .+..-+....+ ...+......+..+..+|+.
T Consensus 158 ~~~~~~~diP~~~~~~--------~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~ 228 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPK--------SCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNR 228 (829)
T ss_pred chhhhCCCCCCccCCC--------cceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCc
Confidence 1111000001000000 111111000 1111111110 01111111111 12222234667889999987
Q ss_pred CcEEEEEecCCcEEEEEccCCCcc
Q 013873 216 PNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
.+|+--..+|.|.+-+....+..
T Consensus 229 -~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 229 -RFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred -ceEEEEecCCcEEEEecchhhhh
Confidence 67777788899888877655443
No 487
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.07 E-value=37 Score=32.55 Aligned_cols=248 Identities=11% Similarity=0.081 Sum_probs=105.4
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-----ceeEEee---ccCCCeeEEEEcC-----CCCeEEE--eeCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-----RTVCQYS---GHQGAVRGLTVST-----DGRILVS--CGTD 130 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~---~h~~~v~~i~~~~-----~~~~l~s--~~~d 130 (434)
...-..++.+|.| +.++.+..+|.+.|+-++.. .....+. .....|.+++|.. +...|+. ....
T Consensus 43 ~~~G~~l~vDP~~-R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~ 121 (504)
T PF10433_consen 43 SQPGQYLAVDPSG-RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQ 121 (504)
T ss_dssp -TT--EEEE-TTS-SEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT
T ss_pred hcCCcEEEECCcC-CEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEec
Confidence 3456678999998 88999999999999998771 0011110 1256788888875 2223333 2222
Q ss_pred Cc--EEE--eeCCCCCCCCCCCCCCCCCCce-eEEEecCceEEEeec-cCCCEEEEeCCeEEEEeCCCC---cceeeeec
Q 013873 131 CT--VKL--WNVPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQ-WEGDLFATAGAQVDIWNHNRS---QPINSFQW 201 (434)
Q Consensus 131 g~--v~i--wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~ 201 (434)
+. +.. |+...+........ .... .......+..-+... +.+.+++.+.+-+.+-+.... .....+..
T Consensus 122 ~~~~~~~y~w~~~~~l~~~~~~~----~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~ 197 (504)
T PF10433_consen 122 RRTHLVTYEWSLDDGLNHVISKS----TLPIRLPNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPS 197 (504)
T ss_dssp -EEEEEEEE--------EETTTT----EEEE--EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--
T ss_pred ccceeEEEeeecccccceeeeec----cccccccccCCCccEEEEcCCCCcEEEEECCEEEEEecccccccccccccccC
Confidence 22 333 44433211100000 0000 001111222222222 345555555544444432221 11112211
Q ss_pred ----CCCceEEEEE------cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCc-
Q 013873 202 ----GTDTVISVRF------NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGH- 270 (434)
Q Consensus 202 ----~~~~i~~i~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (434)
...-+.+..+ .......++.+..+|.+....+..... .+. ....+.
T Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~---------------------i~~~g~~ 254 (504)
T PF10433_consen 198 PPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SIS---------------------ITYLGTL 254 (504)
T ss_dssp H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEE---------------------EEEEEE-
T ss_pred CccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEE---------------------EEEcCCc
Confidence 1233444433 233346778889999998887754332 100 011122
Q ss_pred ccCeEEEEEccCC-CEEEEEeCC--CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC----CC------EEEEee---C
Q 013873 271 ESAVMDIDYSPTG-REFVTGSYD--RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD----AS------YVISGS---D 334 (434)
Q Consensus 271 ~~~i~~~~~sp~~-~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~s~~---~ 334 (434)
....+++++..+| .+|+.|+.- +.+.-|....-..+..+. .-++|.++++.+. .. .|++++ .
T Consensus 255 ~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~--N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~ 332 (504)
T PF10433_consen 255 CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP--NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK 332 (504)
T ss_dssp -S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGG
T ss_pred CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc--CcCCccceEEeccccCCCCcccccceEEEEECcCC
Confidence 3445566666554 467777754 445555533333333333 3378888888531 11 444443 4
Q ss_pred CCcEEEeec
Q 013873 335 DTNLRLWKA 343 (434)
Q Consensus 335 dg~v~vw~~ 343 (434)
+|.+++..-
T Consensus 333 ~gsL~~lr~ 341 (504)
T PF10433_consen 333 RGSLRILRN 341 (504)
T ss_dssp G-EEEEEEE
T ss_pred CCcEEEEec
Confidence 778888753
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.74 E-value=3.2 Score=40.20 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=27.9
Q ss_pred cCeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 272 SAVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 272 ~~i~~~~~sp----~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
..+..+++++ +..++++.+.|+.+++||+.++.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566666 6789999999999999999999885443
No 489
>PRK13684 Ycf48-like protein; Provisional
Probab=84.63 E-value=29 Score=31.05 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=45.7
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc---CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK---RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
-...++++.+.|+++.++++. .|.+.+=..+.+..-.....+ ....+.++.+.+++..+++| .+|.+. ...+.+
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G 289 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG 289 (334)
T ss_pred CcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC
Confidence 345788999999998777654 676643234444432222111 12457889999988766655 566554 344444
Q ss_pred ccc
Q 013873 347 EQL 349 (434)
Q Consensus 347 ~~~ 349 (434)
+.-
T Consensus 290 ~tW 292 (334)
T PRK13684 290 KTW 292 (334)
T ss_pred CCC
Confidence 443
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.39 E-value=8.2 Score=32.47 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=65.9
Q ss_pred EEeCCCCCceEEeeeC-C--CcEEEEeCCCCceeEEee------ccCCCeeEEEEcCCCCeEEEeeCCCc-EEEeeCCCC
Q 013873 72 MAKNPNYLKGFFSGSM-D--GDIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDCT-VKLWNVPVA 141 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l~s~~~dg~-v~iwd~~~~ 141 (434)
=.+.++| .+|.+|+. + ..+++++..+......+. .....--.....+||+.|+.||.+.. .-+|.-...
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC
Confidence 4577888 88888875 2 247888754411111111 11122223344679999999888732 222222111
Q ss_pred CC-CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeec
Q 013873 142 TL-TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW 201 (434)
Q Consensus 142 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 201 (434)
.. ...... ...........-..-+...|+|++|+.+...-.|||..+.+.+..+..
T Consensus 151 ~~~~~~~~~----l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 151 GPGPVTLPF----LSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CCCceeeec----chhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCC
Confidence 00 000000 000000011223345677899999999998888999988876655543
No 491
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=26 Score=30.17 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=85.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec--cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
.+-+..+.++. .+...+..+.-++|.|+.+...-..+.. -.+--.+ |.-.|++...+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdps- 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPS- 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCC-
Confidence 34566677776 4466666677799999987644332211 1133333 34458889888877778889987653
Q ss_pred CCCCCCCCCCCCceeEEEe---cCceEEEeeccCCCEEEEeCCeEEEEeCCCCc---ceeeeecCCCceEEEEEcCCCCc
Q 013873 144 TDSDDSTDNSSEPLAVYVW---KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ---PINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
.+...... ......++.+.+..+.+.-++-+.+.|+.... .+..... ...+.++..+++. -
T Consensus 160 -----------sP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-g~g~~sv~vsdnr-~ 226 (370)
T COG5276 160 -----------SPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-GPGTYSVSVSDNR-A 226 (370)
T ss_pred -----------CceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-CCceEEEEecCCe-e
Confidence 22222211 11224666777777777777888888876543 2222222 2356777777643 2
Q ss_pred EEEEEecCCcEEEEEccCCC
Q 013873 218 VLATTASDRSITLYDLRMSS 237 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~ 237 (434)
+++ -. +--+.+-|....+
T Consensus 227 y~v-vy-~egvlivd~s~~s 244 (370)
T COG5276 227 YLV-VY-DEGVLIVDVSGPS 244 (370)
T ss_pred EEE-Ec-ccceEEEecCCCC
Confidence 333 22 2234445544443
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.25 E-value=30 Score=30.80 Aligned_cols=150 Identities=8% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CCCEEEEeC-------CeEEEEeCCCCcc---eeeeecCCCceEEEEEcCCCCcEEEEEec-----CCcEEEEEccCCCc
Q 013873 174 EGDLFATAG-------AQVDIWNHNRSQP---INSFQWGTDTVISVRFNPAEPNVLATTAS-----DRSITLYDLRMSSP 238 (434)
Q Consensus 174 ~~~~~~~~~-------~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~ 238 (434)
++.+++.++ .++..||+.+.+. ...+..-.......+..--+..+++.|+. ...+..||+.+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCeeeeEEe----
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD----RTIRIFQYNGGRSREIYH---- 310 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~---- 310 (434)
...-.+ .........+...++++.+.|+.+ ..+.+||..+.+......
T Consensus 152 ~~~~~~------------------------p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 207 (323)
T TIGR03548 152 FELPDF------------------------PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTD 207 (323)
T ss_pred eECCCC------------------------CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCC
Q ss_pred -ccCCccEEEEEEcCCCCEEEEeeCC-------------------------------------CcEEEeecCccc
Q 013873 311 -TKRMQRVFCVKFSCDASYVISGSDD-------------------------------------TNLRLWKAKASE 347 (434)
Q Consensus 311 -~~~~~~v~~~~~s~~~~~l~s~~~d-------------------------------------g~v~vw~~~~~~ 347 (434)
......-.+.+...++.+++.|+.+ ..+.+||+.+.+
T Consensus 208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK 282 (323)
T ss_pred CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.17 E-value=5.3 Score=22.12 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=21.4
Q ss_pred CCCceEEEEEcCCCCcEEEEEecC--CcEEEE
Q 013873 202 GTDTVISVRFNPAEPNVLATTASD--RSITLY 231 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~d--g~i~iw 231 (434)
....-....|+|+|..++.+...+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667889999997777777777 766665
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.81 E-value=56 Score=33.62 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=61.0
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
.+..|..+ .+++ +-...+++||+...+..++... ..-...|+.+.+ .+..+++
T Consensus 939 ~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~-----------------------k~~p~~Is~iqt--~~~RI~V 991 (1205)
T KOG1898|consen 939 GAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCEL-----------------------KFIPNRISSIQT--YGARIVV 991 (1205)
T ss_pred eEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhh-----------------------ccCceEEEEEee--cceEEEE
Confidence 34455553 3433 4456899999988776654311 112445666666 4556777
Q ss_pred EeCCCcEEE--EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 289 GSYDRTIRI--FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 289 ~~~d~~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
|..--.|.+ |+-..++........-...|+++.+-.. ..+|.|..=|.+.+-.+.
T Consensus 992 gD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 992 GDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDY-DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecC-CceeeccccCcEEEEECC
Confidence 765555554 4444444444443333355776666543 346667667777776654
No 495
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.61 E-value=38 Score=30.83 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=60.5
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeecc--CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCce
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH--QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (434)
..++.+..+|.|.-.|.+++..+.....- ...+..-.+..+|+ ++.++.+|.+..+|..++.......... .
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~--~--- 142 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG--S--- 142 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC--C---
Confidence 45666688899999999988866543321 12222222333665 7778888988888887665543333222 0
Q ss_pred eEEEecCceEEEeeccCCCEEEE-eCCeEEEEeCCCCcceeeee
Q 013873 158 AVYVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQ 200 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~ 200 (434)
..+..-....++..+.. .++.+...|..+++......
T Consensus 143 ------~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 143 ------PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred ------eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence 01111122334444444 34666666666666655433
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.46 E-value=34 Score=30.13 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=39.9
Q ss_pred ceEEeeeCCCcEEEEeCCC--CceeEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEEeeCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIAN--RRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVA 141 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iwd~~~~ 141 (434)
.+|+.|+.+|- .+.++.. .+..+.+ +...|+++...+.-+.|++-+ ....++.+++..-
T Consensus 14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 14 KWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred cEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 58999999984 4555554 3333333 467899999998777666554 3344999998443
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.16 E-value=27 Score=29.46 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=73.5
Q ss_pred EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec-CC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
-.+||+.+++....-........+-.+.++| .++.+|+. +| .+++++.......... ++...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w------------~e~~~-- 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDW------------TESPN-- 112 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCc------------eECcc--
Confidence 4678887765432221222333444677888 78877765 22 3666664331000000 00000
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCC--eeeeE-Eec-----cCCccEEEEEEcCCCCEEEEe
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IRIFQYNGG--RSREI-YHT-----KRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~--~~~~~-~~~-----~~~~~v~~~~~s~~~~~l~s~ 332 (434)
.+ .....=-....-|||+.|+.||.+.- ..+|.-... ..... +.. ....---.+...|||++++.+
T Consensus 113 ----~m-~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 113 ----DM-QSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ----cc-cCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 00 11222223455679999999887753 445554221 11111 110 000111246678999999988
Q ss_pred eCCCcEEEeecCcccccccCC
Q 013873 333 SDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 333 ~~dg~v~vw~~~~~~~~~~~~ 353 (434)
..++ .|||..+.+.+..+.
T Consensus 188 n~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 188 NRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred cCCc--EEEeCCCCeEEeeCC
Confidence 7654 566887776655543
No 498
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.03 E-value=4.7 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEeeeCCCcEEEEeCCCCceeEEee
Q 013873 81 GFFSGSMDGDIRLWDIANRRTVCQYS 106 (434)
Q Consensus 81 ~l~sg~~dg~i~iwd~~~~~~~~~~~ 106 (434)
.++.++.+|.|.-.|..+|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35666999999999999999988876
No 499
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.63 E-value=4.2 Score=21.37 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=21.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEe
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQY 105 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~ 105 (434)
..++.++.+|.+..+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46788888999999999998876653
No 500
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=80.39 E-value=19 Score=36.00 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=87.2
Q ss_pred CEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEc-CCC-------CcEEEEEecCCcEEEEEccCCCcceEEEeeec
Q 013873 176 DLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN-PAE-------PNVLATTASDRSITLYDLRMSSPARKVIMRAN 247 (434)
Q Consensus 176 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~-~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 247 (434)
..-++.++.+.+|+.+.+.....+..-...|..+..- |.- .++|+.+ ....+.++-+........+.+
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~--- 170 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSL--- 170 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEE---
Confidence 3456778889999999877666555555556555542 221 1222222 223344444332222222111
Q ss_pred CceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------e-------------ee
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG--------R-------------SR 306 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--------~-------------~~ 306 (434)
++.. . ...-..-.|.|+.-+.+|+.+++|..| +.+|.+.-. + .+
T Consensus 171 -------fnTg----l--~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sll 235 (1263)
T COG5308 171 -------FNTG----L--VVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLL 235 (1263)
T ss_pred -------Eecc----e--EEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhc
Confidence 0000 0 001123468888888889999998877 667764310 0 00
Q ss_pred eE--EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 307 EI--YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 307 ~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
.. ...-+...|..++.......|.+-.....|+-|.+.......
T Consensus 236 Ps~~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl~g 281 (1263)
T COG5308 236 PSFFSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGLVG 281 (1263)
T ss_pred ccccccCCcccchhheeecccccceeeecccceeeeEeeecccccc
Confidence 11 112233578888888777788888888888988887766554
Done!