Query 013873
Match_columns 434
No_of_seqs 710 out of 3028
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 18:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.5E-44 1.2E-48 315.7 34.6 276 57-387 4-284 (304)
2 1vyh_C Platelet-activating fac 100.0 6.1E-44 2.1E-48 327.3 35.4 272 57-344 99-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.1E-42 3.9E-47 311.0 34.6 279 57-387 46-326 (340)
4 3ow8_A WD repeat-containing pr 100.0 5E-43 1.7E-47 310.3 32.0 276 57-388 23-305 (321)
5 3ow8_A WD repeat-containing pr 100.0 2.4E-42 8.2E-47 305.9 32.7 262 43-344 55-320 (321)
6 2pbi_B Guanine nucleotide-bind 100.0 2.4E-41 8.1E-46 303.9 36.6 283 57-388 55-341 (354)
7 4g56_B MGC81050 protein; prote 100.0 4.3E-41 1.5E-45 302.4 32.6 274 62-348 38-346 (357)
8 4gqb_B Methylosome protein 50; 100.0 9E-41 3.1E-45 297.9 33.8 244 63-347 79-333 (344)
9 3iz6_a 40S ribosomal protein R 100.0 1.2E-41 4.2E-46 309.0 28.6 290 55-388 55-359 (380)
10 1nr0_A Actin interacting prote 100.0 9.9E-41 3.4E-45 321.6 36.3 308 56-386 137-594 (611)
11 4gqb_B Methylosome protein 50; 100.0 1.1E-41 3.6E-46 303.9 26.6 278 63-393 27-319 (344)
12 4ery_A WD repeat-containing pr 100.0 3.1E-40 1E-44 292.0 35.2 278 57-389 14-295 (312)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-41 4.5E-46 304.7 26.3 294 57-393 6-323 (345)
14 3frx_A Guanine nucleotide-bind 100.0 1.4E-40 4.9E-45 294.6 32.0 282 57-388 8-301 (319)
15 1got_B GT-beta; complex (GTP-b 100.0 1.8E-40 6.3E-45 296.7 32.0 270 34-342 65-340 (340)
16 2pm7_B Protein transport prote 100.0 1.4E-39 4.9E-44 285.3 35.3 254 59-344 2-284 (297)
17 3frx_A Guanine nucleotide-bind 100.0 1.2E-39 3.9E-44 288.8 33.1 260 45-346 39-318 (319)
18 1erj_A Transcriptional repress 100.0 2.5E-39 8.4E-44 295.3 34.0 271 47-346 86-390 (393)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-40 1.4E-44 294.9 27.7 298 32-351 24-341 (345)
20 2ynn_A Coatomer subunit beta'; 100.0 8.6E-40 2.9E-44 287.6 27.0 275 32-345 21-302 (304)
21 1nr0_A Actin interacting prote 100.0 3.2E-39 1.1E-43 311.1 33.0 286 32-352 26-362 (611)
22 2pbi_B Guanine nucleotide-bind 100.0 5.4E-39 1.9E-43 288.5 32.2 273 32-342 72-354 (354)
23 2xzm_R RACK1; ribosome, transl 100.0 1.7E-38 5.7E-43 284.5 33.6 284 57-389 12-325 (343)
24 2xzm_R RACK1; ribosome, transl 100.0 1.2E-38 4.1E-43 285.4 31.8 266 43-347 46-342 (343)
25 2hes_X YDR267CP; beta-propelle 100.0 1E-38 3.5E-43 284.1 30.9 279 56-384 4-306 (330)
26 4aow_A Guanine nucleotide-bind 100.0 4.3E-38 1.5E-42 281.7 34.8 263 57-347 29-339 (340)
27 3bg1_A Protein SEC13 homolog; 100.0 3.8E-39 1.3E-43 285.0 25.6 250 61-344 8-292 (316)
28 3iz6_a 40S ribosomal protein R 100.0 5.3E-40 1.8E-44 298.3 20.0 290 32-348 74-378 (380)
29 4e54_B DNA damage-binding prot 100.0 3E-39 1E-43 298.8 25.2 275 58-348 111-433 (435)
30 2hes_X YDR267CP; beta-propelle 100.0 2E-38 6.8E-43 282.2 29.1 273 45-345 33-328 (330)
31 1erj_A Transcriptional repress 100.0 4.1E-38 1.4E-42 287.2 31.5 270 64-384 62-363 (393)
32 3zwl_B Eukaryotic translation 100.0 5.4E-37 1.8E-41 277.6 37.3 276 60-353 26-354 (369)
33 3ei3_B DNA damage-binding prot 100.0 6E-38 2E-42 285.6 30.9 292 44-388 51-367 (383)
34 3jrp_A Fusion protein of prote 100.0 7.5E-38 2.6E-42 284.4 30.1 260 57-348 2-290 (379)
35 4a11_B DNA excision repair pro 100.0 8.6E-37 3E-41 280.2 37.2 290 39-352 16-372 (408)
36 4ery_A WD repeat-containing pr 100.0 5.3E-38 1.8E-42 277.6 27.3 273 32-344 31-311 (312)
37 2ymu_A WD-40 repeat protein; u 100.0 8.2E-37 2.8E-41 293.3 35.4 304 46-389 243-565 (577)
38 4aez_A CDC20, WD repeat-contai 100.0 5.2E-37 1.8E-41 280.9 31.5 268 45-352 112-387 (401)
39 3k26_A Polycomb protein EED; W 100.0 2.6E-37 8.8E-42 279.5 29.2 271 62-345 14-366 (366)
40 3f3f_A Nucleoporin SEH1; struc 100.0 7.8E-37 2.7E-41 274.3 31.7 265 60-352 5-344 (351)
41 1gxr_A ESG1, transducin-like e 100.0 2.3E-36 7.8E-41 270.1 34.5 267 61-344 46-336 (337)
42 2ymu_A WD-40 repeat protein; u 100.0 3.6E-36 1.2E-40 288.9 37.7 274 47-342 285-577 (577)
43 1sq9_A Antiviral protein SKI8; 100.0 1E-36 3.5E-41 278.8 31.8 276 58-347 8-397 (397)
44 2pm9_A Protein WEB1, protein t 100.0 4.2E-37 1.4E-41 283.2 28.5 276 46-352 45-344 (416)
45 3odt_A Protein DOA1; ubiquitin 100.0 1E-35 3.5E-40 263.1 35.3 279 55-352 7-303 (313)
46 3dm0_A Maltose-binding peripla 100.0 2.8E-36 9.5E-41 295.4 34.5 257 58-354 374-641 (694)
47 3i2n_A WD repeat-containing pr 100.0 3.4E-36 1.2E-40 271.2 31.1 277 59-348 11-356 (357)
48 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-37 1.2E-41 279.3 24.2 262 62-345 4-274 (372)
49 4gga_A P55CDC, cell division c 100.0 9.8E-36 3.3E-40 274.1 33.5 265 45-350 124-400 (420)
50 3dm0_A Maltose-binding peripla 100.0 3.8E-36 1.3E-40 294.4 32.3 262 45-344 404-692 (694)
51 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-36 1.1E-40 300.8 32.4 276 57-387 4-284 (814)
52 3gre_A Serine/threonine-protei 100.0 3.7E-37 1.3E-41 285.4 23.7 300 51-384 48-418 (437)
53 3vl1_A 26S proteasome regulato 100.0 7.4E-37 2.5E-41 281.9 25.5 308 31-386 63-398 (420)
54 3mmy_A MRNA export factor; mRN 100.0 2.2E-35 7.4E-40 267.0 33.4 276 52-345 25-346 (368)
55 1r5m_A SIR4-interacting protei 100.0 5.9E-37 2E-41 282.8 23.1 286 32-347 53-363 (425)
56 3dw8_B Serine/threonine-protei 100.0 2.1E-36 7.1E-41 281.3 25.7 271 64-349 26-377 (447)
57 4h5i_A Guanine nucleotide-exch 100.0 1.1E-35 3.7E-40 268.0 29.2 251 61-346 68-344 (365)
58 1vyh_C Platelet-activating fac 100.0 2.3E-36 8E-41 277.0 24.9 246 42-301 126-410 (410)
59 1k8k_C P40, ARP2/3 complex 41 100.0 6.8E-36 2.3E-40 270.9 26.1 267 45-349 29-365 (372)
60 3sfz_A APAF-1, apoptotic pepti 100.0 8.8E-35 3E-39 303.0 38.0 274 59-347 608-915 (1249)
61 3v7d_B Cell division control p 100.0 3.3E-35 1.1E-39 274.5 31.3 289 43-382 139-442 (464)
62 1yfq_A Cell cycle arrest prote 100.0 1.4E-35 4.9E-40 265.6 27.1 252 60-353 5-290 (342)
63 3dwl_C Actin-related protein 2 100.0 7.8E-37 2.7E-41 277.6 19.0 261 62-344 7-280 (377)
64 3vl1_A 26S proteasome regulato 100.0 2.3E-35 7.8E-40 272.0 28.3 282 38-345 111-419 (420)
65 4g56_B MGC81050 protein; prote 100.0 8.3E-36 2.8E-40 268.0 24.3 289 71-393 10-331 (357)
66 2xyi_A Probable histone-bindin 100.0 6.1E-35 2.1E-39 269.5 29.9 257 60-347 122-412 (430)
67 3jro_A Fusion protein of prote 100.0 1.3E-35 4.6E-40 292.1 26.4 259 59-349 2-289 (753)
68 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-36 2.9E-40 278.9 22.9 265 43-345 180-517 (524)
69 1pgu_A Actin interacting prote 100.0 4.6E-35 1.6E-39 283.3 28.9 313 44-386 181-597 (615)
70 3dwl_C Actin-related protein 2 100.0 2.7E-36 9.2E-41 274.1 18.4 278 32-343 19-377 (377)
71 2pm9_A Protein WEB1, protein t 100.0 5.7E-36 1.9E-40 275.6 19.7 283 33-346 76-415 (416)
72 1r5m_A SIR4-interacting protei 100.0 9.8E-35 3.4E-39 267.9 27.8 270 33-344 117-424 (425)
73 3ei3_B DNA damage-binding prot 100.0 2.4E-34 8.2E-39 261.8 28.6 278 41-345 91-382 (383)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-33 9.9E-38 259.8 35.7 308 40-386 92-420 (445)
75 4ggc_A P55CDC, cell division c 100.0 2E-33 6.8E-38 248.9 32.8 261 45-346 44-316 (318)
76 1gxr_A ESG1, transducin-like e 100.0 8.5E-34 2.9E-38 253.3 30.3 289 65-388 8-321 (337)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.5E-33 1.5E-37 258.5 34.6 278 44-346 137-443 (445)
78 3vu4_A KMHSV2; beta-propeller 100.0 3.4E-33 1.2E-37 250.9 31.5 264 50-347 3-273 (355)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-34 1.3E-38 262.2 25.6 263 46-348 57-345 (402)
80 3v7d_B Cell division control p 100.0 3.2E-33 1.1E-37 261.1 32.0 247 57-350 112-386 (464)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 6.8E-34 2.3E-38 260.4 26.4 277 67-388 35-328 (402)
82 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-34 9.8E-39 299.2 26.0 304 32-350 623-1039(1249)
83 4aez_A CDC20, WD repeat-contai 100.0 1.2E-33 4.3E-38 258.5 26.2 269 61-389 86-365 (401)
84 1p22_A F-BOX/WD-repeat protein 100.0 2E-33 6.7E-38 260.0 26.8 257 46-351 153-420 (435)
85 1pgu_A Actin interacting prote 100.0 4E-33 1.4E-37 269.7 30.0 258 63-354 15-292 (615)
86 2oaj_A Protein SNI1; WD40 repe 100.0 6E-33 2.1E-37 276.9 31.8 324 42-382 75-631 (902)
87 2j04_B YDR362CP, TAU91; beta p 100.0 9E-34 3.1E-38 265.2 23.3 253 65-345 132-428 (524)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-32 5.5E-37 255.0 30.1 243 66-346 4-342 (450)
89 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-33 5.8E-38 281.2 23.7 279 32-350 21-307 (814)
90 1p22_A F-BOX/WD-repeat protein 100.0 4.6E-32 1.6E-36 250.8 31.1 235 61-347 128-367 (435)
91 2pm7_B Protein transport prote 100.0 7.9E-33 2.7E-37 242.4 23.3 235 37-302 22-285 (297)
92 3dw8_B Serine/threonine-protei 100.0 3.8E-33 1.3E-37 259.3 22.1 279 32-344 36-445 (447)
93 4gga_A P55CDC, cell division c 100.0 8.3E-32 2.8E-36 247.9 30.8 264 68-389 107-380 (420)
94 4h5i_A Guanine nucleotide-exch 100.0 9.4E-33 3.2E-37 248.8 23.5 276 66-389 14-328 (365)
95 1yfq_A Cell cycle arrest prote 100.0 3.8E-32 1.3E-36 243.3 26.6 264 44-342 31-321 (342)
96 3gre_A Serine/threonine-protei 100.0 1.5E-32 5.2E-37 254.4 24.1 283 44-342 84-437 (437)
97 4aow_A Guanine nucleotide-bind 100.0 1.8E-31 6.3E-36 238.6 29.4 285 84-389 9-322 (340)
98 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-31 3.8E-36 267.8 30.8 258 62-343 13-310 (902)
99 1l0q_A Surface layer protein; 100.0 1.3E-30 4.4E-35 237.8 33.2 262 48-353 14-283 (391)
100 4ggc_A P55CDC, cell division c 100.0 1.5E-30 5.2E-35 230.4 30.8 263 69-389 28-300 (318)
101 3zwl_B Eukaryotic translation 100.0 2.8E-30 9.7E-35 233.4 32.3 255 101-388 24-330 (369)
102 4gq1_A NUP37; propeller, trans 100.0 1.2E-31 4.2E-36 244.2 21.0 258 64-344 87-388 (393)
103 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-31 4.1E-36 240.0 20.2 238 73-347 43-294 (343)
104 3bg1_A Protein SEC13 homolog; 100.0 6.7E-32 2.3E-36 238.6 18.3 238 33-301 22-292 (316)
105 4a11_B DNA excision repair pro 100.0 3.8E-30 1.3E-34 235.9 30.2 283 43-344 63-404 (408)
106 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-30 1E-34 239.7 29.4 272 61-345 97-391 (450)
107 3bws_A Protein LP49; two-domai 100.0 5.7E-30 2E-34 236.8 30.4 256 47-345 145-432 (433)
108 4e54_B DNA damage-binding prot 100.0 3.3E-31 1.1E-35 245.0 21.8 251 41-306 137-434 (435)
109 3k26_A Polycomb protein EED; W 100.0 1.5E-30 5.2E-35 235.0 24.9 238 47-301 45-365 (366)
110 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-30 5.6E-35 237.3 24.8 236 63-344 12-296 (588)
111 3mmy_A MRNA export factor; mRN 100.0 8E-30 2.8E-34 230.4 27.7 271 92-391 22-333 (368)
112 2xyi_A Probable histone-bindin 100.0 2.5E-29 8.4E-34 232.0 29.8 315 47-389 24-394 (430)
113 3jrp_A Fusion protein of prote 100.0 1.2E-29 4.1E-34 230.2 27.0 229 45-304 32-289 (379)
114 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-30 1.1E-34 230.7 21.6 255 42-344 54-332 (343)
115 3f3f_A Nucleoporin SEH1; struc 100.0 7.5E-30 2.5E-34 228.7 23.8 263 45-309 32-344 (351)
116 1sq9_A Antiviral protein SKI8; 100.0 2.4E-29 8E-34 229.9 27.5 274 102-385 9-366 (397)
117 2w18_A PALB2, fancn, partner a 100.0 1.6E-29 5.4E-34 216.9 23.3 238 48-343 65-355 (356)
118 3odt_A Protein DOA1; ubiquitin 100.0 6.8E-29 2.3E-33 219.2 28.0 248 100-386 9-279 (313)
119 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-29 1.9E-33 227.4 26.3 244 48-334 66-350 (588)
120 3i2n_A WD repeat-containing pr 100.0 1.9E-29 6.4E-34 227.1 23.2 248 37-304 81-355 (357)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5.3E-33 220.6 28.4 252 49-348 43-339 (355)
122 3bws_A Protein LP49; two-domai 100.0 1.5E-28 5.1E-33 227.3 26.2 269 58-388 115-415 (433)
123 1l0q_A Surface layer protein; 100.0 1.6E-27 5.4E-32 217.4 30.6 230 80-352 3-240 (391)
124 3jro_A Fusion protein of prote 100.0 2.3E-29 8E-34 247.7 19.1 231 42-303 27-286 (753)
125 4gq1_A NUP37; propeller, trans 100.0 4.3E-29 1.5E-33 227.4 14.8 295 68-389 17-375 (393)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.2E-28 1.8E-32 221.5 21.8 276 47-386 94-410 (415)
127 1nir_A Nitrite reductase; hemo 99.9 5.4E-25 1.9E-29 207.5 32.0 305 45-354 158-523 (543)
128 2w18_A PALB2, fancn, partner a 99.9 1.2E-24 4E-29 186.8 23.4 281 57-389 26-342 (356)
129 3u4y_A Uncharacterized protein 99.9 6.7E-24 2.3E-28 188.8 27.7 259 48-347 22-306 (331)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.7E-25 2.6E-29 200.4 21.4 243 65-349 61-348 (415)
131 1nir_A Nitrite reductase; hemo 99.9 1.6E-23 5.4E-28 197.6 30.7 259 73-349 144-462 (543)
132 1pby_B Quinohemoprotein amine 99.9 3.2E-24 1.1E-28 191.2 24.5 261 51-353 16-318 (337)
133 2ojh_A Uncharacterized protein 99.9 4E-24 1.4E-28 186.8 21.9 249 49-336 25-293 (297)
134 1ri6_A Putative isomerase YBHE 99.9 1.5E-22 5E-27 180.9 28.4 253 63-344 34-307 (343)
135 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-23 8E-28 205.7 24.1 261 66-344 36-366 (741)
136 3u4y_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 176.5 30.3 240 72-348 3-255 (331)
137 3vgz_A Uncharacterized protein 99.9 6.2E-22 2.1E-26 177.6 29.4 258 65-352 39-310 (353)
138 1jmx_B Amine dehydrogenase; ox 99.9 2E-22 6.8E-27 180.5 26.0 267 71-353 4-333 (349)
139 2ojh_A Uncharacterized protein 99.9 4.8E-23 1.6E-27 179.9 21.4 251 84-389 17-287 (297)
140 3hfq_A Uncharacterized protein 99.9 1.2E-21 4.1E-26 175.4 30.4 259 63-349 36-323 (347)
141 1xfd_A DIP, dipeptidyl aminope 99.9 7.5E-23 2.6E-27 201.6 21.1 267 67-347 17-347 (723)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 8.1E-23 2.8E-27 187.6 17.7 213 65-346 35-279 (434)
143 3vgz_A Uncharacterized protein 99.9 5.5E-21 1.9E-25 171.4 28.6 246 48-336 71-335 (353)
144 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-21 9.2E-26 189.9 27.7 269 67-347 82-437 (706)
145 1xfd_A DIP, dipeptidyl aminope 99.9 3.7E-22 1.3E-26 196.7 20.2 287 27-346 19-394 (723)
146 3scy_A Hypothetical bacterial 99.9 7.6E-20 2.6E-24 164.6 32.8 262 65-349 48-343 (361)
147 3o4h_A Acylamino-acid-releasin 99.9 3.4E-22 1.2E-26 191.7 18.3 235 66-350 21-279 (582)
148 2ecf_A Dipeptidyl peptidase IV 99.9 2E-21 7E-26 191.9 21.4 249 68-352 110-421 (741)
149 1k32_A Tricorn protease; prote 99.9 3.9E-21 1.3E-25 196.3 23.7 252 60-347 197-463 (1045)
150 1ri6_A Putative isomerase YBHE 99.9 2.6E-20 8.8E-25 166.3 26.0 233 80-344 6-261 (343)
151 1k32_A Tricorn protease; prote 99.9 8.6E-20 3E-24 186.4 29.1 257 61-347 331-639 (1045)
152 1pby_B Quinohemoprotein amine 99.9 2.1E-20 7.3E-25 166.4 20.4 234 80-352 2-276 (337)
153 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-20 4.1E-25 185.3 20.5 263 69-352 28-350 (706)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 1E-19 3.5E-24 163.9 22.3 254 65-346 38-342 (365)
155 1z68_A Fibroblast activation p 99.8 9.6E-21 3.3E-25 186.3 15.2 261 71-347 20-348 (719)
156 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-19 9.4E-24 160.0 23.2 224 48-311 23-334 (349)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 6.6E-19 2.2E-23 161.6 25.2 160 64-237 90-280 (434)
158 3fvz_A Peptidyl-glycine alpha- 99.8 4.6E-18 1.6E-22 150.6 29.8 252 66-345 23-322 (329)
159 4a5s_A Dipeptidyl peptidase 4 99.8 5E-19 1.7E-23 174.2 24.1 265 68-349 18-357 (740)
160 1q7f_A NHL, brain tumor CG1071 99.8 2.4E-17 8.1E-22 143.2 30.1 244 63-348 26-283 (286)
161 3pe7_A Oligogalacturonate lyas 99.8 2.5E-18 8.5E-23 156.3 23.5 252 55-348 19-332 (388)
162 3hfq_A Uncharacterized protein 99.8 1.5E-17 5E-22 148.8 26.9 224 88-345 15-271 (347)
163 2oiz_A Aromatic amine dehydrog 99.8 5.1E-17 1.7E-21 145.5 28.9 252 87-352 29-343 (361)
164 3pe7_A Oligogalacturonate lyas 99.8 1.8E-18 6.1E-23 157.2 18.9 281 29-345 40-382 (388)
165 1z68_A Fibroblast activation p 99.8 7.2E-19 2.5E-23 173.0 16.4 284 28-345 19-391 (719)
166 3o4h_A Acylamino-acid-releasin 99.8 3.7E-18 1.3E-22 163.7 20.8 259 32-345 29-315 (582)
167 3scy_A Hypothetical bacterial 99.8 1.1E-16 3.7E-21 143.9 27.6 236 80-344 14-290 (361)
168 3e5z_A Putative gluconolactona 99.8 7.9E-16 2.7E-20 134.2 29.9 249 57-347 18-288 (296)
169 2dg1_A DRP35, lactonase; beta 99.8 2.9E-15 9.9E-20 133.0 32.8 250 55-335 33-300 (333)
170 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.9E-16 1.7E-20 139.8 27.4 234 81-348 4-295 (365)
171 3azo_A Aminopeptidase; POP fam 99.8 7.8E-17 2.7E-21 157.0 23.2 252 60-352 17-331 (662)
172 3c5m_A Oligogalacturonate lyas 99.8 5E-17 1.7E-21 148.0 20.5 243 68-348 37-332 (396)
173 1rwi_B Serine/threonine-protei 99.8 1E-15 3.5E-20 131.6 26.2 241 68-349 25-268 (270)
174 2xdw_A Prolyl endopeptidase; a 99.7 1.4E-15 4.9E-20 149.0 29.5 244 64-347 122-416 (710)
175 3no2_A Uncharacterized protein 99.7 5.7E-15 2E-19 126.7 27.9 228 80-352 6-259 (276)
176 3dsm_A Uncharacterized protein 99.7 3E-15 1E-19 132.3 26.1 247 67-353 44-309 (328)
177 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.7E-21 143.7 18.1 275 27-344 38-381 (396)
178 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1.1E-19 133.9 23.7 246 50-327 35-360 (361)
179 3azo_A Aminopeptidase; POP fam 99.7 5.3E-16 1.8E-20 151.1 20.3 264 49-348 50-372 (662)
180 2gop_A Trilobed protease; beta 99.7 3.4E-15 1.2E-19 133.3 23.0 221 67-348 15-294 (347)
181 2bkl_A Prolyl endopeptidase; m 99.7 2.1E-15 7.3E-20 147.3 23.0 244 63-348 117-400 (695)
182 2dg1_A DRP35, lactonase; beta 99.7 5.4E-15 1.8E-19 131.2 23.5 241 67-352 6-269 (333)
183 2gop_A Trilobed protease; beta 99.7 8.9E-15 3.1E-19 130.6 24.9 219 67-344 59-330 (347)
184 1qks_A Cytochrome CD1 nitrite 99.7 1E-13 3.4E-18 130.5 32.3 228 80-345 168-421 (567)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 8.4E-14 2.9E-18 122.4 29.9 250 62-345 13-299 (314)
186 2mad_H Methylamine dehydrogena 99.7 2.4E-13 8.3E-18 121.7 33.0 263 73-351 27-356 (373)
187 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-15 6.1E-20 149.0 20.2 272 45-343 35-396 (740)
188 1qks_A Cytochrome CD1 nitrite 99.7 6.3E-13 2.1E-17 125.1 33.0 298 51-353 182-546 (567)
189 2z2n_A Virginiamycin B lyase; 99.7 6.3E-13 2.1E-17 115.8 31.1 241 62-344 10-254 (299)
190 3sjl_D Methylamine dehydrogena 99.6 3.2E-13 1.1E-17 119.2 27.6 267 72-353 38-371 (386)
191 3g4e_A Regucalcin; six bladed 99.6 1.9E-12 6.5E-17 112.7 31.0 239 63-334 9-261 (297)
192 3dsm_A Uncharacterized protein 99.6 1.3E-13 4.3E-18 121.9 23.8 220 86-349 14-257 (328)
193 2z2n_A Virginiamycin B lyase; 99.6 4.6E-12 1.6E-16 110.3 31.5 238 65-346 55-296 (299)
194 1yr2_A Prolyl oligopeptidase; 99.6 1.1E-13 3.6E-18 136.3 23.2 243 65-347 161-443 (741)
195 1q7f_A NHL, brain tumor CG1071 99.6 9.4E-13 3.2E-17 114.0 26.4 197 64-303 74-281 (286)
196 3hrp_A Uncharacterized protein 99.6 2E-12 6.7E-17 117.5 29.3 254 66-343 130-408 (409)
197 3c75_H MADH, methylamine dehyd 99.6 4E-13 1.4E-17 120.9 24.1 250 89-352 99-409 (426)
198 3no2_A Uncharacterized protein 99.6 5E-13 1.7E-17 114.6 21.5 196 120-353 4-203 (276)
199 3iuj_A Prolyl endopeptidase; h 99.6 5.6E-13 1.9E-17 130.0 24.3 243 64-347 126-407 (693)
200 2qc5_A Streptogramin B lactona 99.6 1.6E-11 5.4E-16 106.9 31.1 240 63-344 16-259 (300)
201 3fvz_A Peptidyl-glycine alpha- 99.6 6.6E-13 2.2E-17 117.4 22.0 220 55-302 78-322 (329)
202 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-12 6.3E-17 127.0 27.0 236 76-352 81-375 (710)
203 1xip_A Nucleoporin NUP159; bet 99.5 2.6E-13 9E-18 120.3 17.3 171 68-331 39-230 (388)
204 3dr2_A Exported gluconolactona 99.5 9E-12 3.1E-16 108.8 26.9 241 55-336 33-298 (305)
205 3e5z_A Putative gluconolactona 99.5 2.8E-12 9.7E-17 111.6 23.2 207 100-352 18-252 (296)
206 2ghs_A AGR_C_1268P; regucalcin 99.5 3.6E-11 1.2E-15 105.9 30.4 231 67-335 49-292 (326)
207 2bkl_A Prolyl endopeptidase; m 99.5 9.4E-13 3.2E-17 128.7 22.0 235 74-349 75-354 (695)
208 2qc5_A Streptogramin B lactona 99.5 6.5E-11 2.2E-15 103.0 29.2 236 64-343 59-298 (300)
209 1mda_H Methylamine dehydrogena 99.5 2.5E-12 8.5E-17 113.8 19.9 256 80-353 33-354 (368)
210 1rwi_B Serine/threonine-protei 99.5 4.1E-12 1.4E-16 108.9 20.6 199 65-304 65-266 (270)
211 2qe8_A Uncharacterized protein 99.4 5E-11 1.7E-15 105.9 22.4 252 67-342 17-318 (343)
212 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-10 4.6E-15 114.2 25.1 233 75-350 115-399 (741)
213 3sjl_D Methylamine dehydrogena 99.4 4.9E-10 1.7E-14 99.0 25.7 249 52-325 65-384 (386)
214 1xip_A Nucleoporin NUP159; bet 99.4 7.2E-12 2.5E-16 111.1 13.7 173 165-385 39-225 (388)
215 2ece_A 462AA long hypothetical 99.4 6.2E-10 2.1E-14 99.0 25.5 237 76-333 93-399 (462)
216 2mad_H Methylamine dehydrogena 99.4 3.6E-10 1.2E-14 101.2 24.4 93 50-146 51-162 (373)
217 3g4e_A Regucalcin; six bladed 99.4 1.3E-09 4.4E-14 94.7 27.0 205 108-352 11-236 (297)
218 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.4E-09 4.6E-14 95.3 25.1 195 65-302 69-299 (314)
219 2hz6_A Endoplasmic reticulum t 99.3 1.2E-12 4.1E-17 117.3 4.5 220 80-347 10-238 (369)
220 3hrp_A Uncharacterized protein 99.2 2.7E-09 9.2E-14 96.9 24.0 201 110-348 131-357 (409)
221 1kb0_A Quinohemoprotein alcoho 99.2 2.7E-10 9.2E-15 110.2 17.8 269 80-353 129-515 (677)
222 1yiq_A Quinohemoprotein alcoho 99.2 1.8E-09 6.3E-14 104.6 23.2 257 80-352 71-512 (689)
223 2ghs_A AGR_C_1268P; regucalcin 99.2 6.2E-09 2.1E-13 91.6 24.5 199 112-352 51-266 (326)
224 3c75_H MADH, methylamine dehyd 99.2 2E-08 6.8E-13 90.4 25.9 238 50-309 103-409 (426)
225 1mda_H Methylamine dehydrogena 99.2 1.2E-09 4E-14 96.8 16.3 236 51-324 51-366 (368)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.3E-08 2.2E-12 87.1 27.5 249 80-352 54-344 (376)
227 1npe_A Nidogen, entactin; glyc 99.1 8.8E-08 3E-12 81.6 26.4 220 67-327 36-263 (267)
228 3dr2_A Exported gluconolactona 99.1 2.3E-08 8E-13 87.1 22.8 205 102-352 37-273 (305)
229 3iuj_A Prolyl endopeptidase; h 99.1 7.6E-09 2.6E-13 100.9 21.3 198 107-347 126-361 (693)
230 2iwa_A Glutamine cyclotransfer 99.1 4E-08 1.4E-12 82.1 22.1 209 100-347 10-239 (266)
231 2fp8_A Strictosidine synthase; 99.1 3.3E-07 1.1E-11 80.4 29.0 240 66-345 18-313 (322)
232 3hxj_A Pyrrolo-quinoline quino 99.1 2.8E-08 9.7E-13 87.5 21.8 217 80-345 108-324 (330)
233 1fwx_A Nitrous oxide reductase 99.1 4.8E-09 1.6E-13 96.7 16.3 240 76-347 99-433 (595)
234 1npe_A Nidogen, entactin; glyc 99.1 4.2E-07 1.4E-11 77.4 27.6 232 80-353 2-246 (267)
235 2hz6_A Endoplasmic reticulum t 99.0 5.9E-11 2E-15 106.4 3.3 184 120-351 8-198 (369)
236 2qe8_A Uncharacterized protein 99.0 1.5E-08 5.2E-13 89.8 18.5 231 110-347 17-280 (343)
237 1kb0_A Quinohemoprotein alcoho 99.0 6.3E-08 2.2E-12 93.7 22.8 252 88-345 189-567 (677)
238 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.3E-07 4.3E-12 85.1 23.3 245 80-342 104-375 (376)
239 3nol_A Glutamine cyclotransfer 99.0 2.7E-07 9.2E-12 76.2 21.9 194 100-334 32-244 (262)
240 2p4o_A Hypothetical protein; p 99.0 1.2E-06 4.1E-11 76.2 27.7 237 58-335 24-278 (306)
241 2ece_A 462AA long hypothetical 98.9 1.6E-06 5.6E-11 77.3 26.5 192 119-344 93-351 (462)
242 1fwx_A Nitrous oxide reductase 98.9 1.5E-07 5.2E-12 86.9 20.4 246 81-345 17-361 (595)
243 2iwa_A Glutamine cyclotransfer 98.9 1.1E-06 3.7E-11 73.5 23.7 215 56-303 9-238 (266)
244 1yiq_A Quinohemoprotein alcoho 98.9 2.4E-07 8.2E-12 89.8 22.4 237 88-330 182-533 (689)
245 3hxj_A Pyrrolo-quinoline quino 98.9 7.6E-08 2.6E-12 84.7 16.7 234 62-351 55-289 (330)
246 3nol_A Glutamine cyclotransfer 98.9 8.3E-07 2.8E-11 73.3 21.4 202 56-291 31-244 (262)
247 3nok_A Glutaminyl cyclase; bet 98.9 1E-06 3.5E-11 72.7 21.8 193 100-333 44-253 (268)
248 3mbr_X Glutamine cyclotransfer 98.8 2.4E-06 8.3E-11 69.9 23.0 195 100-334 10-223 (243)
249 2ad6_A Methanol dehydrogenase 98.8 4.7E-07 1.6E-11 85.7 21.2 268 80-353 116-502 (571)
250 1kv9_A Type II quinohemoprotei 98.8 3.7E-07 1.3E-11 88.2 19.7 269 80-352 118-495 (668)
251 3v64_C Agrin; beta propeller, 98.8 3.1E-05 1.1E-09 68.4 29.8 243 66-352 33-282 (349)
252 3mbr_X Glutamine cyclotransfer 98.7 4.4E-06 1.5E-10 68.4 21.2 202 57-291 10-223 (243)
253 1k3i_A Galactose oxidase precu 98.7 4.7E-07 1.6E-11 87.6 17.3 243 71-347 190-499 (656)
254 3nok_A Glutaminyl cyclase; bet 98.7 4.3E-06 1.5E-10 69.0 19.8 198 58-290 45-253 (268)
255 1ijq_A LDL receptor, low-densi 98.7 0.00011 3.9E-09 63.9 30.2 228 89-352 10-245 (316)
256 4a2l_A BT_4663, two-component 98.7 4.3E-05 1.5E-09 75.8 30.7 250 69-348 175-439 (795)
257 1w6s_A Methanol dehydrogenase 98.7 8E-06 2.7E-10 77.3 24.0 114 80-201 63-200 (599)
258 3tc9_A Hypothetical hydrolase; 98.6 5.9E-05 2E-09 68.7 28.4 255 67-344 137-429 (430)
259 3v65_B Low-density lipoprotein 98.6 5E-05 1.7E-09 68.1 27.3 241 68-352 78-325 (386)
260 4hw6_A Hypothetical protein, I 98.6 0.0001 3.5E-09 67.1 29.1 252 67-344 139-432 (433)
261 3qqz_A Putative uncharacterize 98.6 7.7E-05 2.6E-09 61.9 25.0 218 61-300 21-251 (255)
262 4a2l_A BT_4663, two-component 98.6 0.00022 7.6E-09 70.7 32.8 244 66-347 356-616 (795)
263 1flg_A Protein (quinoprotein e 98.6 1.6E-05 5.5E-10 75.3 23.4 271 80-353 118-524 (582)
264 2xe4_A Oligopeptidase B; hydro 98.6 1.4E-05 4.7E-10 78.6 23.5 151 68-234 175-353 (751)
265 1kv9_A Type II quinohemoprotei 98.6 9.7E-06 3.3E-10 78.4 21.6 239 88-332 177-519 (668)
266 3v65_B Low-density lipoprotein 98.5 9E-05 3.1E-09 66.5 25.9 207 66-310 115-326 (386)
267 3v64_C Agrin; beta propeller, 98.5 0.00017 5.7E-09 63.7 27.2 204 67-309 73-282 (349)
268 3p5b_L Low density lipoprotein 98.5 0.00048 1.7E-08 62.0 30.2 235 81-352 85-327 (400)
269 2fp8_A Strictosidine synthase; 98.5 5.7E-05 2E-09 66.0 22.4 211 111-352 20-275 (322)
270 3p5b_L Low density lipoprotein 98.5 0.00068 2.3E-08 61.0 29.8 210 65-310 110-328 (400)
271 2p4o_A Hypothetical protein; p 98.5 0.0002 6.8E-09 62.1 25.3 213 100-348 23-244 (306)
272 3sov_A LRP-6, low-density lipo 98.4 0.00043 1.5E-08 60.1 27.0 226 88-352 12-245 (318)
273 2ad6_A Methanol dehydrogenase 98.4 7.8E-05 2.7E-09 70.5 22.7 81 249-331 443-523 (571)
274 3kya_A Putative phosphatase; s 98.4 0.00062 2.1E-08 62.2 27.5 266 68-352 140-482 (496)
275 1ijq_A LDL receptor, low-densi 98.4 0.00099 3.4E-08 57.9 27.6 207 66-309 29-245 (316)
276 1k3i_A Galactose oxidase precu 98.3 1.9E-05 6.3E-10 76.5 17.5 243 68-334 244-530 (656)
277 3amr_A 3-phytase; beta-propell 98.3 0.0002 6.7E-09 61.9 21.5 213 71-353 30-272 (355)
278 3qqz_A Putative uncharacterize 98.3 0.00092 3.1E-08 55.5 25.6 208 104-343 21-251 (255)
279 3v9f_A Two-component system se 98.3 0.001 3.5E-08 65.9 29.5 246 65-347 311-570 (781)
280 3v9f_A Two-component system se 98.3 0.0015 5E-08 64.7 29.5 248 66-347 257-526 (781)
281 1w6s_A Methanol dehydrogenase 98.2 0.0008 2.7E-08 63.7 25.4 157 82-241 124-348 (599)
282 2ism_A Putative oxidoreductase 98.2 0.0025 8.7E-08 56.2 26.5 239 66-333 30-333 (352)
283 3m0c_C LDL receptor, low-densi 98.2 0.003 1E-07 61.8 29.0 228 88-351 403-638 (791)
284 3sov_A LRP-6, low-density lipo 98.2 0.0027 9.2E-08 55.1 25.8 205 67-309 35-245 (318)
285 1flg_A Protein (quinoprotein e 98.2 0.00039 1.3E-08 65.9 21.9 49 282-330 496-544 (582)
286 1n7d_A LDL receptor, low-densi 98.1 3.3E-05 1.1E-09 74.9 14.5 231 88-353 385-622 (699)
287 2xe4_A Oligopeptidase B; hydro 98.1 0.00068 2.3E-08 66.6 23.2 195 111-341 175-394 (751)
288 3m0c_C LDL receptor, low-densi 98.1 0.005 1.7E-07 60.3 28.3 160 65-236 422-590 (791)
289 4hw6_A Hypothetical protein, I 98.1 0.001 3.6E-08 60.5 21.6 196 111-343 140-372 (433)
290 4a0p_A LRP6, LRP-6, low-densit 98.0 0.011 3.8E-07 56.4 28.5 222 87-350 13-242 (628)
291 2p9w_A MAL S 1 allergenic prot 98.0 0.0066 2.3E-07 52.0 23.1 210 107-344 10-264 (334)
292 1n7d_A LDL receptor, low-densi 97.9 6.1E-05 2.1E-09 73.0 11.4 208 67-310 406-622 (699)
293 2xzh_A Clathrin heavy chain 1; 97.9 0.0079 2.7E-07 51.1 30.1 242 72-349 72-336 (365)
294 3sre_A PON1, serum paraoxonase 97.9 0.0073 2.5E-07 52.8 23.2 198 68-301 51-297 (355)
295 2xbg_A YCF48-like protein; pho 97.9 0.01 3.4E-07 51.8 27.2 237 66-348 35-281 (327)
296 3tc9_A Hypothetical hydrolase; 97.9 0.0013 4.3E-08 59.9 18.5 153 166-344 139-300 (430)
297 4a0p_A LRP6, LRP-6, low-densit 97.8 0.022 7.7E-07 54.3 27.7 199 67-305 37-240 (628)
298 3s94_A LRP-6, low-density lipo 97.8 0.013 4.5E-07 55.9 25.5 226 88-352 17-250 (619)
299 2p9w_A MAL S 1 allergenic prot 97.8 0.0037 1.3E-07 53.5 18.8 164 168-345 17-215 (334)
300 2xbg_A YCF48-like protein; pho 97.8 0.018 6E-07 50.2 24.6 231 66-342 79-319 (327)
301 2vpj_A Kelch-like protein 12; 97.7 0.0069 2.4E-07 52.0 20.7 224 80-347 16-280 (301)
302 1bpo_A Protein (clathrin); cla 97.7 0.022 7.6E-07 50.4 30.7 243 72-350 71-336 (494)
303 3s94_A LRP-6, low-density lipo 97.7 0.04 1.4E-06 52.6 28.3 155 67-236 84-244 (619)
304 2xn4_A Kelch-like protein 2; s 97.7 0.01 3.4E-07 51.0 20.4 224 80-347 17-278 (302)
305 3ei3_A DNA damage-binding prot 97.6 0.034 1.2E-06 57.0 26.6 217 90-343 808-1060(1158)
306 3pbp_A Nucleoporin NUP82; beta 97.6 0.0079 2.7E-07 53.2 18.0 165 170-343 28-210 (452)
307 3a9g_A Putative uncharacterize 97.5 0.039 1.4E-06 48.5 26.0 243 66-333 28-330 (354)
308 3sre_A PON1, serum paraoxonase 97.5 0.036 1.2E-06 48.4 21.7 71 271-343 220-296 (355)
309 3kya_A Putative phosphatase; s 97.5 0.041 1.4E-06 50.4 22.1 212 112-346 141-410 (496)
310 3ii7_A Kelch-like protein 7; p 97.4 0.027 9.1E-07 48.4 20.0 224 80-347 13-274 (306)
311 1zgk_A Kelch-like ECH-associat 97.4 0.045 1.5E-06 47.1 21.4 224 80-347 26-289 (308)
312 3das_A Putative oxidoreductase 97.3 0.071 2.4E-06 46.4 26.0 260 61-333 26-326 (347)
313 2xzh_A Clathrin heavy chain 1; 97.3 0.071 2.4E-06 45.4 25.4 221 88-351 48-296 (365)
314 4asc_A Kelch repeat and BTB do 97.2 0.051 1.7E-06 46.9 19.4 224 80-347 6-279 (315)
315 3pbp_A Nucleoporin NUP82; beta 97.1 0.13 4.6E-06 45.5 20.8 119 165-298 67-208 (452)
316 1tl2_A L10, protein (tachylect 97.1 0.074 2.5E-06 42.5 19.4 153 164-343 41-206 (236)
317 2g8s_A Glucose/sorbosone dehyd 97.0 0.17 5.9E-06 44.4 26.5 265 66-343 17-350 (353)
318 1xi4_A Clathrin heavy chain; a 97.0 0.19 6.6E-06 51.7 22.3 245 88-350 47-336 (1630)
319 3ei3_A DNA damage-binding prot 96.9 0.46 1.6E-05 48.8 31.5 74 66-139 553-635 (1158)
320 1bpo_A Protein (clathrin); cla 96.9 0.22 7.4E-06 44.3 27.4 220 88-350 47-294 (494)
321 3amr_A 3-phytase; beta-propell 96.8 0.077 2.6E-06 45.9 16.0 139 183-344 50-209 (355)
322 2vpj_A Kelch-like protein 12; 96.7 0.14 4.7E-06 43.8 17.5 185 80-306 64-282 (301)
323 1tl2_A L10, protein (tachylect 96.7 0.17 5.9E-06 40.4 16.4 140 80-230 5-158 (236)
324 1cru_A Protein (soluble quinop 96.7 0.36 1.2E-05 44.0 27.8 108 66-182 26-162 (454)
325 3qhy_B Beta-lactamase inhibito 96.6 0.26 8.8E-06 41.7 18.6 227 68-350 25-251 (282)
326 2uvk_A YJHT; unknown function, 96.6 0.066 2.3E-06 47.1 14.8 58 294-352 286-349 (357)
327 3ii7_A Kelch-like protein 7; p 96.5 0.15 5.1E-06 43.6 16.1 186 80-307 57-277 (306)
328 2zwa_A Leucine carboxyl methyl 96.3 0.44 1.5E-05 46.2 19.6 147 80-237 399-579 (695)
329 2woz_A Kelch repeat and BTB do 96.2 0.54 1.9E-05 40.4 21.6 64 282-347 206-289 (318)
330 2xn4_A Kelch-like protein 2; s 96.1 0.23 7.7E-06 42.4 15.2 185 80-306 63-280 (302)
331 2be1_A Serine/threonine-protei 96.1 0.48 1.6E-05 41.0 16.8 62 80-141 11-77 (339)
332 2ism_A Putative oxidoreductase 96.1 0.67 2.3E-05 40.6 22.5 63 66-128 74-153 (352)
333 1zgk_A Kelch-like ECH-associat 95.9 0.7 2.4E-05 39.5 17.4 64 282-347 168-242 (308)
334 3ott_A Two-component system se 95.6 1.8 6.3E-05 42.4 29.7 231 66-341 62-303 (758)
335 3sbq_A Nitrous-oxide reductase 95.6 0.72 2.5E-05 42.5 16.4 77 270-346 321-409 (638)
336 2woz_A Kelch repeat and BTB do 94.8 1.7 5.7E-05 37.3 16.4 143 76-236 55-232 (318)
337 4asc_A Kelch repeat and BTB do 94.8 1.7 5.9E-05 37.1 19.4 143 76-236 44-222 (315)
338 2uvk_A YJHT; unknown function, 94.7 0.62 2.1E-05 40.8 13.4 28 282-309 316-349 (357)
339 3s25_A Hypothetical 7-bladed b 94.7 1.7 6E-05 36.9 18.6 197 87-345 35-255 (302)
340 3das_A Putative oxidoreductase 94.6 0.75 2.6E-05 40.0 13.1 112 202-333 30-158 (347)
341 3ott_A Two-component system se 94.3 4.3 0.00015 39.8 30.8 244 68-344 192-447 (758)
342 1cru_A Protein (soluble quinop 94.3 3 0.0001 37.9 24.1 61 163-223 26-99 (454)
343 3a9g_A Putative uncharacterize 94.2 2.6 8.8E-05 36.9 24.6 198 66-290 72-330 (354)
344 2zwa_A Leucine carboxyl methyl 94.2 1.5 5.1E-05 42.5 15.8 201 119-348 396-638 (695)
345 2g8s_A Glucose/sorbosone dehyd 93.0 4.2 0.00014 35.5 22.7 116 66-182 65-216 (353)
346 4hvt_A Ritya.17583.B, post-pro 92.8 7.4 0.00025 37.7 21.3 73 271-344 349-429 (711)
347 2be1_A Serine/threonine-protei 92.5 0.36 1.2E-05 41.8 7.4 118 217-355 11-140 (339)
348 1xi4_A Clathrin heavy chain; a 91.3 3.1 0.00011 43.3 13.3 197 32-241 73-295 (1630)
349 3sbq_A Nitrous-oxide reductase 91.2 1.4 4.9E-05 40.6 10.0 115 205-334 324-454 (638)
350 3qhy_B Beta-lactamase inhibito 90.3 7.3 0.00025 32.6 19.8 203 68-327 64-266 (282)
351 2wg3_C Hedgehog-interacting pr 90.0 8.4 0.00029 35.0 14.2 118 204-336 14-160 (463)
352 4gq2_M Nucleoporin NUP120; bet 88.8 12 0.00041 37.7 15.5 38 272-309 236-273 (950)
353 3s25_A Hypothetical 7-bladed b 87.3 13 0.00043 31.6 24.0 209 72-343 58-291 (302)
354 3zwu_A Alkaline phosphatase PH 86.2 3.4 0.00012 38.8 9.2 60 273-332 477-548 (592)
355 3q6k_A 43.2 kDa salivary prote 85.8 18 0.0006 31.8 17.2 154 183-345 123-306 (381)
356 2wg3_C Hedgehog-interacting pr 85.8 20 0.0007 32.5 25.1 54 67-120 14-79 (463)
357 4a9v_A PHOX; hydrolase, beta-p 85.3 5.4 0.00019 37.0 9.8 62 272-333 476-549 (592)
358 4gq2_M Nucleoporin NUP120; bet 85.1 25 0.00085 35.4 15.4 34 111-144 237-270 (950)
359 3b7f_A Glycosyl hydrolase, BNR 83.8 22 0.00076 31.3 23.7 68 67-135 115-203 (394)
360 3kci_A Probable E3 ubiquitin-p 79.2 33 0.0011 30.2 24.8 252 80-350 63-350 (389)
361 3q6k_A 43.2 kDa salivary prote 78.3 35 0.0012 30.0 24.1 215 65-333 85-342 (381)
362 3kci_A Probable E3 ubiquitin-p 76.7 39 0.0013 29.7 17.6 207 122-349 11-245 (389)
363 4fhn_B Nucleoporin NUP120; pro 71.7 12 0.00042 38.6 8.6 37 273-309 239-275 (1139)
364 4fhn_B Nucleoporin NUP120; pro 65.2 12 0.00042 38.6 7.1 37 316-352 239-275 (1139)
365 4d9s_A UVB-resistance protein 59.6 93 0.0032 27.4 27.3 256 67-350 68-362 (406)
366 4a9v_A PHOX; hydrolase, beta-p 58.3 53 0.0018 30.7 9.1 61 67-128 476-549 (592)
367 1sqj_A OXG-RCBH, oligoxylogluc 57.5 1.5E+02 0.0051 29.1 25.8 62 66-128 14-83 (789)
368 3zwu_A Alkaline phosphatase PH 55.6 44 0.0015 31.4 8.3 59 68-127 477-548 (592)
369 3f7f_A Nucleoporin NUP120; nuc 55.4 19 0.00064 34.6 5.8 38 67-107 222-259 (729)
370 3b7f_A Glycosyl hydrolase, BNR 55.3 1.1E+02 0.0036 26.8 26.0 51 80-131 23-77 (394)
371 3no0_A DNA gyrase subunit A; D 54.2 93 0.0032 25.8 22.1 219 58-345 12-246 (276)
372 3mvd_K Regulator of chromosome 53.1 1.2E+02 0.0042 26.8 30.0 229 111-349 76-378 (423)
373 3l6v_A GYRA, DNA gyrase subuni 50.2 1.3E+02 0.0044 26.2 16.3 208 115-344 1-264 (370)
374 3f7f_A Nucleoporin NUP120; nuc 46.7 37 0.0013 32.6 6.3 37 273-311 223-259 (729)
375 3al9_A Plexin-A2; beta-propell 44.6 61 0.0021 30.1 7.4 68 273-340 401-476 (539)
376 3uc1_A DNA gyrase subunit A; D 42.8 1.6E+02 0.0054 25.1 14.8 73 67-141 146-229 (327)
377 3mez_B Mannose-specific lectin 42.8 80 0.0028 21.8 7.5 26 318-345 59-84 (113)
378 1q47_A Semaphorin 3A; beta pro 41.8 1.5E+02 0.0051 27.1 9.4 68 273-340 405-487 (495)
379 1suu_A DNA gyrase subunit A; t 41.5 1.6E+02 0.0055 24.8 24.1 200 80-301 9-230 (312)
380 2cn3_A Xyloglucanase, beta-1,4 41.4 2.5E+02 0.0087 27.1 26.3 60 67-127 23-90 (737)
381 1zi0_A DNA gyrase subunit A; b 40.5 1.6E+02 0.0056 24.7 20.2 208 119-345 1-226 (307)
382 1suu_A DNA gyrase subunit A; t 37.7 1.8E+02 0.0063 24.5 21.6 205 118-346 5-232 (312)
383 3uc1_A DNA gyrase subunit A; D 32.9 2.3E+02 0.0078 24.1 21.5 209 67-301 42-278 (327)
384 3ol2_B Plexin-B1; beta-propell 28.7 1.8E+02 0.0062 26.8 7.7 69 273-341 388-462 (528)
385 1q47_A Semaphorin 3A; beta pro 28.5 1.8E+02 0.0062 26.6 7.7 68 68-135 405-487 (495)
386 4d9s_A UVB-resistance protein 27.6 3.1E+02 0.011 24.0 28.1 255 66-349 15-309 (406)
387 4gz8_A Semaphorin-3A; multi-do 25.5 4.1E+02 0.014 25.4 9.7 67 274-340 414-495 (667)
388 4h3o_A Lectin; cadmium, plant 25.3 1.6E+02 0.0055 19.9 10.8 57 167-234 21-77 (105)
389 3nvq_A Semaphorin-7A; beta-pro 24.1 2.6E+02 0.0088 26.3 7.9 57 80-136 381-445 (590)
390 3nvq_A Semaphorin-7A; beta-pro 20.5 3E+02 0.01 25.8 7.5 57 285-341 382-445 (590)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-44 Score=315.67 Aligned_cols=276 Identities=19% Similarity=0.307 Sum_probs=238.7
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.+..+|.+|.+.|++++|+|++ .+|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 4567889999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC-cceeeeecCCCceEEEEEcC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~ 213 (434)
|+.++. .......+...+.+++++|++.++++++ +.|++||+.++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 83 NYNTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp ETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred ECCCCc------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 998773 2334445677899999999999999886 57999999887 44567888999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc--CCCEEEEEeC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP--TGREFVTGSY 291 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~~~~l~~~~~ 291 (434)
.++.+|++|+.||.|++||++...+...+ ..+|...+..++|+| ++.+|++|+.
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~------------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTL------------------------TTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEE------------------------ECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcccee------------------------ccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 76689999999999999999876554433 235677899999987 7789999999
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhc
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYK 371 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
|+.|++||++++++...+..+. ..|.+++|+|++.+|++|+.||.|++||+.+++.+..+. .
T Consensus 207 D~~i~iWd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-----------------~ 268 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-----------------V 268 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------C
T ss_pred CCeEEEEeCCCCccceeeCCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-----------------C
Confidence 9999999999999888876554 889999999999999999999999999999998887664 3
Q ss_pred cchhhhhhhhccCCCh
Q 013873 372 HLPEIKRIVRHRHLPK 387 (434)
Q Consensus 372 ~~~~v~~~~~~~~~~~ 387 (434)
+...+.+++++|....
T Consensus 269 ~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 269 GLERSWCIATHPTGRK 284 (304)
T ss_dssp SSSSEEEEEECTTCGG
T ss_pred CCccEEEEEECCCCCc
Confidence 4455667777776544
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-44 Score=327.28 Aligned_cols=272 Identities=21% Similarity=0.391 Sum_probs=239.1
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
+....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.||+|++|
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CceEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3466789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
|+.+...... ...+...+.+++++|++.++++++ +.|++||+.++.++..+.+|...|.++.++|+
T Consensus 178 d~~~~~~~~~------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 178 DFQGFECIRT------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp ETTSSCEEEC------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred eCCCCceeEE------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence 9976643222 223566899999999999998886 67999999999999999999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcce--------------------------------------EEEeeecCceeEEEee
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPAR--------------------------------------KVIMRANEDCNCYSYD 256 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~ 256 (434)
+ .+|++|+.||.|++||+++..... .+.+.++.++.+.+||
T Consensus 246 g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 246 G-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred C-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 8 799999999999999997654322 2456678889999999
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
.+... ....+.+|...|++++|+|+|++|++|+.|+.|++||+.+++....+..+ ...|++++|+|++.+|++|+.||
T Consensus 325 ~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 325 VSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp TTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCEEEEETTS
T ss_pred CCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCCEEEEEeCCC
Confidence 87643 45566789999999999999999999999999999999999888777654 47899999999999999999999
Q ss_pred cEEEeecC
Q 013873 337 NLRLWKAK 344 (434)
Q Consensus 337 ~v~vw~~~ 344 (434)
.|++|+++
T Consensus 403 ~i~vW~~r 410 (410)
T 1vyh_C 403 TVKVWECR 410 (410)
T ss_dssp EEEEEC--
T ss_pred cEEEEeCC
Confidence 99999863
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-42 Score=311.04 Aligned_cols=279 Identities=22% Similarity=0.316 Sum_probs=238.6
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
+...+|.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4457789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
++.+..... ........+...+.++.+++++.++.++. +.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 125 ~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 125 NLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ECccCCCcc--------eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 997653110 01122344567889999998887554443 679999999999999999999999999999988
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
.+|++|+.||.|++||+++...... +.+|...|++++|+|++++|++|+.||.|
T Consensus 197 -~~l~sg~~d~~v~~wd~~~~~~~~~-------------------------~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 197 -RLFVSGACDASAKLWDVREGMCRQT-------------------------FTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp -SEEEEEETTSCEEEEETTTCSEEEE-------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -CEEEEEeCCCcEEEEECCCCeeEEE-------------------------EcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 7999999999999999987655433 34799999999999999999999999999
Q ss_pred EEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccch
Q 013873 296 RIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLP 374 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (434)
++||++++.....+... +...|++++|+|++++|++|+.||.|++||+.+++.+..+. +|..
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-----------------~h~~ 313 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-----------------GHDN 313 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------CCSS
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-----------------cCCC
Confidence 99999998876665322 23579999999999999999999999999999888766552 6778
Q ss_pred hhhhhhhccCCCh
Q 013873 375 EIKRIVRHRHLPK 387 (434)
Q Consensus 375 ~v~~~~~~~~~~~ 387 (434)
.|.+++++|....
T Consensus 314 ~v~~~~~s~dg~~ 326 (340)
T 1got_B 314 RVSCLGVTDDGMA 326 (340)
T ss_dssp CEEEEEECTTSSC
T ss_pred cEEEEEEcCCCCE
Confidence 8899999887554
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=310.26 Aligned_cols=276 Identities=20% Similarity=0.315 Sum_probs=235.8
Q ss_pred cccccccCCCCCeEEEEeCCCC---CceEEeeeCCCcEEEEeCCCCce--eEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 57 PFIGALDGHRDGISCMAKNPNY---LKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
.+...+.+|.+.|++++|+|++ ..+|++|+.||+|+|||+.+++. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3456778999999999999852 26899999999999999987654 456889999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+|++||+.++.. ......+...+.+++|+|++.++++++ +.+.+||+.+++....+..+...+.++
T Consensus 103 ~i~lWd~~~~~~------------~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 103 HIRLWDLENGKQ------------IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp EEEEEETTTTEE------------EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred cEEEEECCCCCE------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 999999987632 222233455678899999999999987 679999999999999999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+|+|++ .+|++|+.||.|++||++++..... +.+|..+|.+++|+|++++|++|
T Consensus 171 ~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~-------------------------~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 171 AYSPDG-KYLASGAIDGIINIFDIATGKLLHT-------------------------LEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTTEEEEE-------------------------ECCCSSCCCEEEECTTSCEEEEE
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCcEEEE-------------------------EcccCCceeEEEEcCCCCEEEEE
Confidence 999998 7999999999999999987654433 34789999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHh
Q 013873 290 SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNR 369 (434)
Q Consensus 290 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
+.|+.|++||++++.....+..+ ...|.+++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus 225 s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------------- 287 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---------------- 287 (321)
T ss_dssp CTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------------
T ss_pred cCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc----------------
Confidence 99999999999998887776554 4789999999999999999999999999999998887663
Q ss_pred hccchhhhhhhhccCCChH
Q 013873 370 YKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~ 388 (434)
.|...|.+++|+|....+
T Consensus 288 -~h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 288 -DHQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp -CCSSCEEEEEECTTSSEE
T ss_pred -CCCCcEEEEEECCCCCEE
Confidence 567788889998876543
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=305.89 Aligned_cols=262 Identities=19% Similarity=0.339 Sum_probs=231.0
Q ss_pred HHHHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC
Q 013873 43 RALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 120 (434)
.....+++|+..... +...+.+|...|.+++|++++ .++++|+.||+|++||+.+++.+..+..|...+.+++|+|+
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence 344556788775543 345789999999999999998 89999999999999999999999999999999999999999
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceee
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS 198 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~ 198 (434)
+++|++++.||.|++|++.++. .......+...+.+++++|++.++++++ +.|++||+.+++.+..
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGK------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCS------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCCcEEEEEcCCCc------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 9999999999999999998763 2233334456789999999999999886 6799999999999999
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
+..|...|.+++|+|++ .+|++|+.||.|++||++....... +.+|...|.+++
T Consensus 202 ~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~-------------------------~~~h~~~v~~~~ 255 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGT-------------------------LSGHASWVLNVA 255 (321)
T ss_dssp ECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEE-------------------------ECCCSSCEEEEE
T ss_pred EcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEE-------------------------EcCCCCceEEEE
Confidence 99999999999999988 7999999999999999987654433 358999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
|+|++.+|++|+.|+.|++||+.+++++..+..+ ...|.+++|+|++++|++++.||.|++||..
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999988887654 4889999999999999999999999999963
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-41 Score=303.90 Aligned_cols=283 Identities=19% Similarity=0.319 Sum_probs=242.5
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
....+|.+|.+.|++++|+|++ .+|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 3467789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
++........ .........+...+.++.|++++..+++++ +.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 134 ~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 134 PLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp ECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred EEeccccccc------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 9865432110 112334456778899999999999888876 67999999999999999999999999999885
Q ss_pred C-CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 215 E-PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 215 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
. +.+|++|+.||.|++||++++..... +.+|...|++++|+|++++|++|+.|+
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-------------------------~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQA-------------------------FETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEE-------------------------ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEE-------------------------ecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 3 37999999999999999988765443 347999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhcc
Q 013873 294 TIRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKH 372 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
+|++||++.+.....+... ....+.+++|+|++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 263 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-----------------~h 325 (354)
T 2pbi_B 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-----------------GH 325 (354)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-----------------CC
T ss_pred eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-----------------CC
Confidence 9999999998776665432 23478999999999999999999999999999888776543 67
Q ss_pred chhhhhhhhccCCChH
Q 013873 373 LPEIKRIVRHRHLPKP 388 (434)
Q Consensus 373 ~~~v~~~~~~~~~~~~ 388 (434)
...|.+++|+|....+
T Consensus 326 ~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAF 341 (354)
T ss_dssp SSCEEEEEECTTSSCE
T ss_pred CCcEEEEEECCCCCEE
Confidence 7889999999876543
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.3e-41 Score=302.41 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=218.1
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeC------CCcEEEEeCCCCce----eEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSM------DGDIRLWDIANRRT----VCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
..+|...|++++|+||| .+|++|+. ||.|++|+..++.. .....+|...|++++|+|++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 35799999999999999 99999997 78899999877654 233456899999999999975 56778899
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+|++||+.+++.... .......+...+.+++|+|++.++++++ +.|++||+.+++.+..+..|...|.++
T Consensus 116 ~v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 116 AVELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp CEEEC--------CC--------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 999999987653211 1223334677899999999999999886 679999999999999999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceE---------------------EEeeecCceeEEEeeCCCCccceeeee
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARK---------------------VIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
+|+|++..+|++++.||.|++||+++..+... ++..+..++.+.+||.+... ....+.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~ 266 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSA 266 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEEC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEe
Confidence 99999877899999999999999987543221 23446778889999987654 455677
Q ss_pred CcccCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecCcc
Q 013873 269 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 269 ~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+|...|++++|+|++ ++|++|+.|++|+|||+++++....+ .|...|++++|+| ++.+|++|+.||.|++|++.+.
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 899999999999987 57999999999999999999876554 4558999999998 8999999999999999999764
Q ss_pred cc
Q 013873 347 EQ 348 (434)
Q Consensus 347 ~~ 348 (434)
..
T Consensus 345 ~~ 346 (357)
T 4g56_B 345 GR 346 (357)
T ss_dssp --
T ss_pred Cc
Confidence 33
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9e-41 Score=297.93 Aligned_cols=244 Identities=15% Similarity=0.205 Sum_probs=202.8
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE----eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ----YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
..|...|++++|+|+ ..|++|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus 79 ~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 446788999999998 4688999999999999998876543 4589999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeec--CCCceEEEEEcC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQW--GTDTVISVRFNP 213 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~ 213 (434)
.++.. ......+...+.+++|++++. ++++++ +.|++||+++++....+.. +...+.+++|+|
T Consensus 157 ~~~~~------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 157 AQQVV------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp TTTEE------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred CCCcE------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 87632 222334677899999999885 666664 6799999999998877643 455789999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC-CEEEEEeCC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYD 292 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d 292 (434)
++..+|++|+.||.|++||+++.+....+ .+|...|++++|+|++ ++|++|+.|
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-------------------------~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSCVLSS-------------------------AVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--CCEEE-------------------------ECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred CCCcceEEeccCCcEEEEECCCCcEEEEE-------------------------cCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 88789999999999999999887766544 4899999999999998 579999999
Q ss_pred CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEeeCCCcEEEeecCccc
Q 013873 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 347 (434)
++|+|||+.+++... + ..|...|++++|+|++. +|++|+.||.|++|++.+..
T Consensus 280 ~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 280 CSLAVLDSSLSELFR-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SCEEEECTTCCEEEE-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEECCCCcEEE-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999999987654 3 34568999999999886 67799999999999998653
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-41 Score=309.02 Aligned_cols=290 Identities=20% Similarity=0.305 Sum_probs=237.3
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
...+.++|.||.+.|++++|+|++ .+|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 334567899999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeee-----ecCCCce
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSF-----QWGTDTV 206 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~-----~~~~~~i 206 (434)
+|++.+....... .........+...+.++.+.|++ ..+++++ +.|++||+.+++.+..+ .+|...|
T Consensus 134 iw~~~~~~~~~~~-----~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 134 IFNLSSQADRDGN-----MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp EEECCCCSSCCCS-----STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred EEECCCCccccCC-----ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9999764321100 01112233456677888888864 4577665 56999999999988776 5688899
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCC-CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
.+++|++.++++|++|+.||.|++||++.. .... .+.+|...|++++|+|+|++
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~-------------------------~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR-------------------------TYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE-------------------------EECCCSSCCCEEEECTTSSE
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE-------------------------EECCcCCCeEEEEEecCCCe
Confidence 999998865689999999999999999743 2222 33589999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEeccC------CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhh
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHTKR------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 359 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 359 (434)
|++|+.||+|++||++++.....+..+. ...|++++|+|+|++|++|+.||.|++||+..++.+..+...
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---- 339 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL---- 339 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----
Confidence 9999999999999999998877764432 124899999999999999999999999999888776544210
Q ss_pred hHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 360 HAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
..+|...|.+++|+|....+
T Consensus 340 ---------~~~h~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 340 ---------QNSHEGRISCLGLSSDGSAL 359 (380)
T ss_dssp ---------CSSCCCCCCEEEECSSSSEE
T ss_pred ---------cCCCCCceEEEEECCCCCEE
Confidence 02678889999999876644
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.9e-41 Score=321.64 Aligned_cols=308 Identities=16% Similarity=0.241 Sum_probs=241.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
+..+..+.+|...|++++|+|+++..|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.||+|++
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence 45567889999999999999998447999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCccee----------------
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN---------------- 197 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~---------------- 197 (434)
||+.++.....+... ......+...+.+++|+|++.++++++ +.|++||+.+++.+.
T Consensus 217 wd~~~g~~~~~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDD-----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp EETTTCCEEEECBCT-----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred EECCCCcEeeeeccc-----cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999877543221100 000113667899999999999999886 569999998775543
Q ss_pred ---------------------------eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce----------
Q 013873 198 ---------------------------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---------- 240 (434)
Q Consensus 198 ---------------------------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------- 240 (434)
.+.+|...|.+++|+|++ .+|++++.||.|++||+.++....
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 234688899999999988 799999999999999986542110
Q ss_pred --------------------------------------------------------------------------------
Q 013873 241 -------------------------------------------------------------------------------- 240 (434)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (434)
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence
Q ss_pred ----------EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeeeE-
Q 013873 241 ----------KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREI- 308 (434)
Q Consensus 241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~- 308 (434)
.++..+..++.+.+|+............+|...|++++|+|+|++|++++.|++|++||+.+ ++....
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee
Confidence 11222445566667766443211112257999999999999999999999999999999987 555443
Q ss_pred EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc--ccCChhhhhhhHHHHHHHHhhcc-chhhhhhhhccCC
Q 013873 309 YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL--GVLHPREQRKHAYHEAVKNRYKH-LPEIKRIVRHRHL 385 (434)
Q Consensus 309 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 385 (434)
....|...|.+++|+|||++|++|+.||.|++|++.++... ..+ .+| ...|.+++|.|..
T Consensus 531 ~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-----------------~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-----------------GAHAMSSVNSVIWLNET 593 (611)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-----------------TSSTTSCEEEEEEEETT
T ss_pred eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-----------------ccCcccCeeEEEEcCCC
Confidence 23336689999999999999999999999999999876532 222 256 6788899998865
Q ss_pred C
Q 013873 386 P 386 (434)
Q Consensus 386 ~ 386 (434)
.
T Consensus 594 ~ 594 (611)
T 1nr0_A 594 T 594 (611)
T ss_dssp E
T ss_pred E
Confidence 4
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=303.92 Aligned_cols=278 Identities=15% Similarity=0.164 Sum_probs=222.5
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-----------CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
..|...|.+++|+||| .+|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||
T Consensus 27 ~~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 4577889999999999 8888877 77888887321 11112223467889999999985 788999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+|+|||+.+++.... .......|...|.+++|+|++.++++++ +.|++||+.+++.+..+.+|...|.++
T Consensus 104 ~v~lWd~~~~~~~~~--------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 104 AVELWELDENETLIV--------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEEEEECTTSSCEE--------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEEeccCCCceeE--------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 999999987743210 1112234677899999999999999986 569999999999999999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEE
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVT 288 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~ 288 (434)
+|+|++..+|++++.||.|++||+++.+....+. ...|...+++++|+|+ +++|++
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-----------------------CSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------CCCEEEEEECSSCTTEEEE
T ss_pred EecCCCCCceeeeccccccccccccccceeeeee-----------------------cceeeccceeeeecCCCCcceEE
Confidence 9999998899999999999999999887655431 1245667999999995 578999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC-CEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHH
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVK 367 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
|+.||.|++||+++++++..+..+. ..|++++|+|++ ++|++|+.||.|+|||+.+++.+..
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~---------------- 295 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS---------------- 295 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE----------------
T ss_pred eccCCcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE----------------
Confidence 9999999999999999888876554 889999999998 5899999999999999998876532
Q ss_pred HhhccchhhhhhhhccCCChHHHHHH
Q 013873 368 NRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 368 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
.+|...|++++|+|..+.++...+
T Consensus 296 --~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 296 --QAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp --CCCSSCEEEEEECSSSTTEEEEEE
T ss_pred --cCCCCCEEEEEEeCCCCeEEEEEc
Confidence 268889999999999887665544
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-40 Score=292.03 Aligned_cols=278 Identities=20% Similarity=0.355 Sum_probs=237.8
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.+..++.+|.+.|++++|+|++ .+|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 3456789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
|+.++.. ......+...+.++.++|++.++++++ +.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 93 d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 93 DVSSGKC------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ETTTCCE------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ECCCCcE------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 9987632 223344567899999999999999886 67999999999999999999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
+ .+|++++.||.|++||+++......+ ...+...+..++|+|++++|++++.|+.
T Consensus 161 ~-~~l~~~~~d~~i~~wd~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 215 (312)
T 4ery_A 161 G-SLIVSSSYDGLCRIWDTASGQCLKTL------------------------IDDDNPPVSFVKFSPNGKYILAATLDNT 215 (312)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEEEE------------------------CCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred C-CEEEEEeCCCcEEEEECCCCceeeEE------------------------eccCCCceEEEEECCCCCEEEEEcCCCe
Confidence 8 79999999999999999876554332 1246678999999999999999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCc--cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhcc
Q 013873 295 IRIFQYNGGRSREIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKH 372 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
|++||+.+++....+..+... .+......+++.+|++|+.||.|++||+.+++.+..+. +|
T Consensus 216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----------------~h 278 (312)
T 4ery_A 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-----------------GH 278 (312)
T ss_dssp EEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-----------------CC
T ss_pred EEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-----------------cc
Confidence 999999999888777554321 22333344688999999999999999999988876664 57
Q ss_pred chhhhhhhhccCCChHH
Q 013873 373 LPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 373 ~~~v~~~~~~~~~~~~~ 389 (434)
...|..++++|..+.++
T Consensus 279 ~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 279 TDVVISTACHPTENIIA 295 (312)
T ss_dssp SSCEEEEEECSSSSEEE
T ss_pred CCcEEEEeecCcCCceE
Confidence 77888999999887654
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=304.67 Aligned_cols=294 Identities=20% Similarity=0.286 Sum_probs=231.0
Q ss_pred cccccccCCCC-CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE---EeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 57 PFIGALDGHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC---QYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 57 ~~~~~l~~h~~-~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
.++.++.+|.+ .|.+++|+|+| .+||+|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 45678899998 99999999999 999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc---ceeeeecCCCceE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ---PINSFQWGTDTVI 207 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~---~~~~~~~~~~~i~ 207 (434)
|++|++..... ........+...+.+++|+|++.++++++ +.|++||+..+. .+..+..|...|.
T Consensus 85 v~iw~~~~~~~----------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 85 TCIWKKNQDDF----------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEEEECCC-E----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EEEEEccCCCe----------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 99999875531 01122334567899999999999999886 579999998764 3566778999999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
+++|+|++ .+|++|+.|+.|++||++...... ...+.+|...|++++|+|+|++|+
T Consensus 155 ~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~-----------------------~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 155 HVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC-----------------------CATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEECSSS-SCEEEEETTSCEEEEEEETTEEEE-----------------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE-----------------------EEEecCCCCceEEEEECCCCCEEE
Confidence 99999998 789999999999999987653221 123458999999999999999999
Q ss_pred EEeCCCcEEEEeCCCC---------------eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 288 TGSYDRTIRIFQYNGG---------------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+|+.|++|++||.... .+...+...|...|.+++|+|++.+|++++.|+.|++|+...+......
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 9999999999996321 1223344446678999999999999999999999999998765422111
Q ss_pred ChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 353 HPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
...... ....+|...|++++|+|..+..+.+++
T Consensus 291 ~~~~~~--------~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 291 TFSLTA--------HLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp CEEEEE--------EETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEEEe--------eecccccCcEeEeEEeCCCceEEEEcC
Confidence 000000 001268889999999999876555444
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-40 Score=294.59 Aligned_cols=282 Identities=18% Similarity=0.302 Sum_probs=232.8
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-----CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
.+..+|.||.+.|++++|+|+++.+|++|+.||+|++||+.+ +..+..+.+|...|.+++|+|++++|++|+.||
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 355688999999999999997668999999999999999864 345677899999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+|++||+.+++. ......+...+.+++++|++.++++++ +.|++||++ ++.+..+.+|...|.++
T Consensus 88 ~v~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 88 TLRLWDVATGET------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEEETTTTEE------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred EEEEEECCCCCe------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 999999987632 233445678899999999999999886 569999996 56677888899999999
Q ss_pred EEcCCC-----CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 210 RFNPAE-----PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 210 ~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.|.|.. ...|++++.|+.|++||++...... .+.+|...|++++|+|+|+
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-------------------------~~~~h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-------------------------DFIGHNSNINTLTASPDGT 209 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEE-------------------------EECCCCSCEEEEEECTTSS
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-------------------------eecCCCCcEEEEEEcCCCC
Confidence 999854 2489999999999999998654433 2348999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHH
Q 013873 285 EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHE 364 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 364 (434)
+|++|+.||.|++||+.+++....+..+ ..|.+++|+|++.+|++++.+ .+++|++.....+..+.+......
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~---- 282 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS---- 282 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCC----
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccc----
Confidence 9999999999999999999888777543 689999999999999988765 599999998877665543221111
Q ss_pred HHHHhhccchhhhhhhhccCCChH
Q 013873 365 AVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
..+...+.+++|+|....+
T Consensus 283 -----~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 283 -----KAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp -----GGGCCCEEEEEECTTSSEE
T ss_pred -----cCcCcceeEEEECCCCCEE
Confidence 1345567788888876544
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-40 Score=296.71 Aligned_cols=270 Identities=17% Similarity=0.274 Sum_probs=229.3
Q ss_pred ChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccC
Q 013873 34 PQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQ 109 (434)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~ 109 (434)
|..+..........+++|+..+...+..+..|...|.+++|+|++ .+|++|+.||.|++||+.+. .....+.+|.
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~ 143 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCcceeEEEecCCC
Confidence 333333334445567889988888899999999999999999998 99999999999999999875 3456788999
Q ss_pred CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEE
Q 013873 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
+.|.++.|++++ .+++++.||+|++||+.++.. ......+...+.+++++|++.++++++ +.|++
T Consensus 144 ~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 144 GYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE------------EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999886 489999999999999987632 222234567899999999999998886 67999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
||++++..+..+..|...|.+++|+|++ .+|++|+.||.|++||++.......+. .
T Consensus 211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-----------------------~ 266 (340)
T 1got_B 211 WDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYS-----------------------H 266 (340)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC-----------------------C
T ss_pred EECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEc-----------------------c
Confidence 9999999999999999999999999988 799999999999999998765433220 1
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
..+...|++++|+|+|++|++|+.|+.|++||+.++.....+..+ ...|.+++|+|++.+|++|+.||.|+|||
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 133457999999999999999999999999999998887777654 48999999999999999999999999997
No 16
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-39 Score=285.27 Aligned_cols=254 Identities=19% Similarity=0.275 Sum_probs=207.3
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC--CceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEE
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--RRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVK 134 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~ 134 (434)
+..+.+|.+.|++++|+|+| .+||+|+.||+|+|||+.+ .+.+..+.+|.++|++++|++ ++++|++|+.||+|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 34678999999999999999 9999999999999999974 367788999999999999986 388999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCcc--eeeeecCCCceEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQP--INSFQWGTDTVIS 208 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~~--~~~~~~~~~~i~~ 208 (434)
+||+.++... .......+...+.+++|+|+ +.++++++ +.|++||++.+.. ...+..|...|.+
T Consensus 81 iWd~~~~~~~----------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 81 IWKEENGRWS----------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp EEEBSSSCBC----------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred EEEcCCCceE----------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 9999765321 12222335678999999997 78888775 6799999987632 4567788999999
Q ss_pred EEEcCCC------------CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 209 VRFNPAE------------PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 209 i~~~~~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
++|+|++ ..+|++|+.|+.|++||++........ ...+.+|...|.+
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~---------------------~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------------------ESTLEGHSDWVRD 209 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE---------------------EEEECCCSSCEEE
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE---------------------EEEecCCCCceEE
Confidence 9999973 368999999999999999875432211 1234589999999
Q ss_pred EEEccCC---CEEEEEeCCCcEEEEeCCCCee--e-eEEe-ccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 277 IDYSPTG---REFVTGSYDRTIRIFQYNGGRS--R-EIYH-TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 277 ~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~--~-~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
++|+|++ .+|++|+.|++|++||++.... . ..+. ..+...|.+++|+|++++|++++.||.|++|+..
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999985 8999999999999999986431 1 1221 2345789999999999999999999999999986
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-39 Score=288.78 Aligned_cols=260 Identities=18% Similarity=0.282 Sum_probs=217.7
Q ss_pred HHHHHhhhhcc-----ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC
Q 013873 45 LTAAKLEKIFA-----RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119 (434)
Q Consensus 45 ~~~~~~~~~~~-----~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 119 (434)
...+++|++.. ...+..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+++.+..+.+|...|.+++|+|
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC
Confidence 33455666543 23467889999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC------CEEEEeC--CeEEEEeCC
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG------DLFATAG--AQVDIWNHN 191 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~i~i~d~~ 191 (434)
++.+|++|+.||+|++||+... .......+...+.++.+.|.. ..+++++ +.|++||+.
T Consensus 118 ~~~~l~s~s~D~~i~vwd~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 118 KASMIISGSRDKTIKVWTIKGQ-------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp TSCEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCC-------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 9999999999999999998632 222333456678888888853 4677765 569999999
Q ss_pred CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 192 RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 192 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
+.+....+.+|...|.+++|+|++ .+|++|+.||.|++||+........+ .+.
T Consensus 185 ~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------~~~ 237 (319)
T 3frx_A 185 QFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTL--------------------------SAQ 237 (319)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEE--------------------------ECC
T ss_pred cchhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEe--------------------------cCC
Confidence 999999999999999999999988 79999999999999999877655443 234
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEec-------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT-------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
..|.+++|+|++.+|++++. +.+++|++..+.....+.. .+...+.+++|+|||++|++|+.||.|+|||+.
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 67999999999999998885 4599999988776655432 223578999999999999999999999999997
Q ss_pred cc
Q 013873 345 AS 346 (434)
Q Consensus 345 ~~ 346 (434)
++
T Consensus 317 t~ 318 (319)
T 3frx_A 317 TA 318 (319)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-39 Score=295.25 Aligned_cols=271 Identities=21% Similarity=0.353 Sum_probs=220.8
Q ss_pred HHHhhhhccccccccccCCCC------------------CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc
Q 013873 47 AAKLEKIFARPFIGALDGHRD------------------GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~------------------~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 108 (434)
.+++|++.++..+..+.+|.. .|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|
T Consensus 86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 164 (393)
T 1erj_A 86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGH 164 (393)
T ss_dssp CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence 456677767777666665542 49999999999 99999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeE
Q 013873 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQV 185 (434)
Q Consensus 109 ~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i 185 (434)
...|.+++|+|++.+|++++.|++|++||+.++. ..........+.+++++| ++.++++++ +.|
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------------CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------------eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 9999999999999999999999999999997663 344455667889999999 889988876 679
Q ss_pred EEEeCCCCcceeee-------ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 186 DIWNHNRSQPINSF-------QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 186 ~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++||+.++..+..+ .+|...|.+++|+|++ .+|++|+.||.|++||++.......... .
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~-------------~ 297 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKT-------------P 297 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------------
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccC-------------C
Confidence 99999998877666 5688899999999998 7899999999999999986543221100 0
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC------CCCEEEEe
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC------DASYVISG 332 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~ 332 (434)
........+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++....+..+ ...|.+++|++ ++.+|++|
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEEEecCCcCcCCCCCEEEEE
Confidence 011223345689999999999999999999999999999999999988777654 47899999986 68899999
Q ss_pred eCCCcEEEeecCcc
Q 013873 333 SDDTNLRLWKAKAS 346 (434)
Q Consensus 333 ~~dg~v~vw~~~~~ 346 (434)
+.||.|++|++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998654
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=294.93 Aligned_cols=298 Identities=20% Similarity=0.312 Sum_probs=224.5
Q ss_pred CCChhhhhhhHHHHHHHHhhhhcccccc---ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeEEee
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFI---GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYS 106 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~ 106 (434)
+.|.............+++|+....... ....+|...|.+++|+|++ .+|++|+.|++|++||+.++ +.+..+.
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 4444444444445556778877655432 2347999999999999998 99999999999999998876 4567889
Q ss_pred ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCce-eEEEecCceEEEeeccCCCEEEEeC--C
Q 013873 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQWEGDLFATAG--A 183 (434)
Q Consensus 107 ~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (434)
+|...|.+++|+|++++|++|+.|++|++||+..... .... ....+...+.+++|+|++.++++++ +
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 172 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----------YECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----------EEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----------eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999976521 0111 2223566899999999999998886 6
Q ss_pred eEEEEeCCCCc--ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 184 QVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 184 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
.|++||...+. ....+.+|...|.+++|+|++ .+|++|+.||+|++||.........+....... ..
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~----------~~ 241 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP----------SW 241 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---C----------EE
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCC----------cc
Confidence 79999998775 446788899999999999998 799999999999999976543222111100000 00
Q ss_pred cceeeee-CcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--------eeEEeccCCccEEEEEEcCCC-CEEEE
Q 013873 262 EAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--------REIYHTKRMQRVFCVKFSCDA-SYVIS 331 (434)
Q Consensus 262 ~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~s~~~-~~l~s 331 (434)
.....+. .|...|.+++|+|++..|++++.|+.|++|+...+.. .......|...|++++|+|++ .+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 1111222 3888999999999999999999999999999875431 112234566889999999987 59999
Q ss_pred eeCCCcEEEeecCccccccc
Q 013873 332 GSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 332 ~~~dg~v~vw~~~~~~~~~~ 351 (434)
|+.||.|++|++.+.+.+..
T Consensus 322 ~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 322 CSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EETTSCEEEEEECC------
T ss_pred cCCCCcEEEEEecCCCCccc
Confidence 99999999999998876543
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.6e-40 Score=287.64 Aligned_cols=275 Identities=19% Similarity=0.238 Sum_probs=228.1
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (434)
++|.............+++|++.+...+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.+++.+..+.+|...
T Consensus 21 fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 99 (304)
T 2ynn_A 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (304)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 44555544444445667899998888899999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEE
Q 013873 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIW 188 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~ 188 (434)
|.+++|+|++.+|++|+.||+|++||+.++.. .......+...+.+++|+| ++..+++++ +.|++|
T Consensus 100 v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999999999975521 1112234567899999999 578888875 679999
Q ss_pred eCCCCcceeeee-cCCCceEEEEEcCC-CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 189 NHNRSQPINSFQ-WGTDTVISVRFNPA-EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 189 d~~~~~~~~~~~-~~~~~i~~i~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
|+....+...+. .+...+..+.|+|. +..+|++|+.||.|++||+++......
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~------------------------- 223 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT------------------------- 223 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-------------------------
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-------------------------
Confidence 998887766665 35578999999873 236899999999999999987655443
Q ss_pred eeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC--EEEEeeCCCcEEEeecC
Q 013873 267 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKAK 344 (434)
Q Consensus 267 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~ 344 (434)
+.+|...|.+++|+|++.+|++|+.||.|++||+.+++....+..+. ..+.+++|+|++. ++++|+.| .+.+|++.
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-SSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-ccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 35899999999999999999999999999999999999888876544 7899999999875 57777655 57788876
Q ss_pred c
Q 013873 345 A 345 (434)
Q Consensus 345 ~ 345 (434)
.
T Consensus 302 ~ 302 (304)
T 2ynn_A 302 N 302 (304)
T ss_dssp -
T ss_pred c
Confidence 4
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-39 Score=311.10 Aligned_cols=286 Identities=17% Similarity=0.250 Sum_probs=232.6
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQ 109 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~ 109 (434)
+.|..+...+.. .+.+.+|++........|.+|.+.|++++|+|+| .+||+|+.||+|+|||+.+++ ....+.+|.
T Consensus 26 ~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~ 103 (611)
T 1nr0_A 26 NTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 103 (611)
T ss_dssp ECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred eCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcceeeEeecccC
Confidence 556666555543 3456788887778888999999999999999999 999999999999999997543 455788999
Q ss_pred CCeeEEEEcCCCCeEEEeeCC----CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--
Q 013873 110 GAVRGLTVSTDGRILVSCGTD----CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG-- 182 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 182 (434)
++|.+++|+|++++|++++.+ +.|++||... .. .....+...+.+++|+|++. .+++++
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SN------------GNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BC------------BCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--Cc------------ceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 999999999999999998865 4788888532 11 11234567899999999986 477665
Q ss_pred CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
+.|++||...++....+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.....+. .
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~------------------~ 230 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFE------------------D 230 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECB------------------C
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeec------------------c
Confidence 569999999999899999999999999999998 799999999999999998765443220 0
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe--------------------------------
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-------------------------------- 310 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------- 310 (434)
......+|.+.|.+++|+|+|++|++++.|++|++||+.+++....+.
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 000112799999999999999999999999999999999876554331
Q ss_pred ----------ccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 311 ----------TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 311 ----------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
..|...|++++|+|+|++|++++.||.|++||+.+++....+
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence 245578999999999999999999999999999988776544
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.4e-39 Score=288.51 Aligned_cols=273 Identities=19% Similarity=0.263 Sum_probs=228.2
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC------ceeEEe
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR------RTVCQY 105 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~------~~~~~~ 105 (434)
+.|..+..........+++|+..+......+..|...|.+++|+|++ .+|++|+.|+.+++|++... .....+
T Consensus 72 ~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 72 WCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCCSGGGCEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccccccccceee
Confidence 33444444444455667889988888888999999999999999999 99999999999999998643 345667
Q ss_pred eccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc--CCCEEEEeC-
Q 013873 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFATAG- 182 (434)
Q Consensus 106 ~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 182 (434)
.+|...|.+++|+|++..|++++.||+|++||+.++.. ......+...+.+++++| ++.++++++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL------------LQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------------EEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE------------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 88999999999999999999999999999999987632 223334566788888877 567888876
Q ss_pred -CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 183 -AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 183 -~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
+.|++||+++++++..+..|...|.+++|+|++ .+|++|+.|++|++||++.......+.
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~------------------ 279 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYS------------------ 279 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC------------------
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEc------------------
Confidence 679999999999999999999999999999988 799999999999999998764332210
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
...+...+.+++|+|+|.+|++|+.|+.|++||+.++.....+.. |...|++++|+|+|++|++|+.||.|++|
T Consensus 280 -----~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 280 -----KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred -----CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-CCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 012345789999999999999999999999999999888777654 45899999999999999999999999999
Q ss_pred e
Q 013873 342 K 342 (434)
Q Consensus 342 ~ 342 (434)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-38 Score=284.51 Aligned_cols=284 Identities=18% Similarity=0.298 Sum_probs=221.6
Q ss_pred cccccccCCCCCeEEEEe-----CC-CCCceEEeeeCCCcEEEEeCCCC-------ceeEEeeccCCCeeEEEEcCCCCe
Q 013873 57 PFIGALDGHRDGISCMAK-----NP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDGRI 123 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~-----~~-~~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~ 123 (434)
.+...|.||.+.|++++| ++ ++ .+|++|+.||+|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 356788999999999999 76 76 89999999999999998753 456678899999999999999999
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeee--
Q 013873 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF-- 199 (434)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~-- 199 (434)
|++|+.||+|++||+.++. .......+...+.+++|+|++..+++++ +.|++||+.... ....
T Consensus 91 l~s~s~D~~v~lwd~~~~~------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp EEEEETTSEEEEEETTSSC------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred EEEEcCCCcEEEEECCCCc------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 9999999999999998763 2233445678899999999999998876 679999997433 2222
Q ss_pred -ecCCCceEEEEEcCCCC---------cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 200 -QWGTDTVISVRFNPAEP---------NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 200 -~~~~~~i~~i~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
..|...|.+++|+|++. .+|++++.||.|++||... .. ...+.+
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-------------------------~~~~~~ 211 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI-------------------------RYTFKA 211 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE-------------------------EEEEEC
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce-------------------------eEEEcC
Confidence 25788899999999762 5899999999999999431 11 113458
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
|...|++++|+|+|++|++|+.||.|++||+.. ......+.. ...|.+++|+|++.++++| .|+.|++|++.+++.
T Consensus 212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK 288 (343)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCS
T ss_pred ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999954 333333322 2569999999999988755 578899999988776
Q ss_pred cc--cCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 349 LG--VLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 349 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
.. .+........ ....+|...+.+++|+|..+.++
T Consensus 289 ~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 289 APVCTIEAEPITKA------EGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp CSEEECCCCSGGGB------TTBCCSCCCEEEEEECSSSCCEE
T ss_pred CceEEeecCcchhh------hhhcCCCCceEEEEECCCCCeEE
Confidence 54 3332111100 11125677889999999876543
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-38 Score=285.45 Aligned_cols=266 Identities=20% Similarity=0.294 Sum_probs=212.0
Q ss_pred HHHHHHHhhhhccc-------cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEE
Q 013873 43 RALTAAKLEKIFAR-------PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGL 115 (434)
Q Consensus 43 ~~~~~~~~~~~~~~-------~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i 115 (434)
.....+++|++... .....+.+|...|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|...|.++
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v 124 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV 124 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 33445677776432 3456789999999999999998 999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC----------CEEEEeC--C
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG----------DLFATAG--A 183 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~ 183 (434)
+|+|++++|++++.|++|++||+.......... ...+...+.++.++|++ .++++++ +
T Consensus 125 ~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 125 AFSPDNRQILSAGAEREIKLWNILGECKFSSAE----------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp EECSSTTEEEEEETTSCEEEEESSSCEEEECCT----------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred EECCCCCEEEEEcCCCEEEEEeccCCceeeeec----------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 999999999999999999999986321110000 00234567888998876 5777765 6
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA 263 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
.|++|| ...+....+..|...|.+++|+|++ .+|++|+.||.|++||+.........
T Consensus 195 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------- 251 (343)
T 2xzm_R 195 RLKVWN-TNFQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQRE--------------------- 251 (343)
T ss_dssp EEEEEE-TTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEE---------------------
T ss_pred EEEEEc-CCCceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccccee---------------------
Confidence 799999 4566777888999999999999998 79999999999999999543322111
Q ss_pred eeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee--EEe----------ccCCccEEEEEEcCCCCEEEE
Q 013873 264 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYH----------TKRMQRVFCVKFSCDASYVIS 331 (434)
Q Consensus 264 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~----------~~~~~~v~~~~~s~~~~~l~s 331 (434)
..+...|.+++|+|++.+++++ .|+.|++||+.++.... .+. ..+...|.+++|+|+|++|++
T Consensus 252 ----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 252 ----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp ----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred ----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 1245579999999999887755 58889999998776543 222 134567999999999999999
Q ss_pred eeCCCcEEEeecCccc
Q 013873 332 GSDDTNLRLWKAKASE 347 (434)
Q Consensus 332 ~~~dg~v~vw~~~~~~ 347 (434)
|+.||.|++|++.++.
T Consensus 327 g~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 327 GFTDGVIRTFSFETSA 342 (343)
T ss_dssp EETTSEEEEEEEEEEE
T ss_pred ecCCceEEEEEEEccC
Confidence 9999999999998764
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=284.07 Aligned_cols=279 Identities=22% Similarity=0.276 Sum_probs=212.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeEEe-ec-cCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQY-SG-HQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
..++..|.+|.+.|.+++|+|+ +|++|+.||+|++||+.++ .....+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567789999999999999985 8999999999999999875 344555 34 999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCce-eEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC----cceeeeecCCC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS----QPINSFQWGTD 204 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~----~~~~~~~~~~~ 204 (434)
+|++||+....... ...... ....+...+.+++|+|++.++++++ +.|++||+... +.+..+..|..
T Consensus 81 ~v~iw~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 81 TVSIWAKEESADRT------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp CEEEEEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred cEEEEEcccCcCcc------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99999986431100 001122 2334677899999999999999886 67999999532 45677888999
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC--
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-- 282 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-- 282 (434)
.|.+++|+|++ .+|++|+.|+.|++||...... .....+.+|...|.+++|+|+
T Consensus 155 ~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 155 DVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW-----------------------ECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp CEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCSSS
T ss_pred ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe-----------------------eEEEEccCCCCcEEEEEecCCCC
Confidence 99999999988 7999999999999999865421 112244589999999999998
Q ss_pred CCEEEEEeCCCcEEEEeCCCC--------eeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc--ccccC
Q 013873 283 GREFVTGSYDRTIRIFQYNGG--------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE--QLGVL 352 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~ 352 (434)
+.+|++|+.|++|++||+..+ .....+...|...|.+++|++++ +|++++.||.|++|+..+++ .+...
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 778999999999999998754 23333333366889999999765 79999999999999987663 22111
Q ss_pred ChhhhhhhHHHHHHHHhhccch-hhhhhhhccC
Q 013873 353 HPREQRKHAYHEAVKNRYKHLP-EIKRIVRHRH 384 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 384 (434)
. ..|.. .|..++|+|.
T Consensus 290 ~----------------~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 290 A----------------LCHGVYEINVVKWLEL 306 (330)
T ss_dssp S----------------CTTTTSCEEEEEEC--
T ss_pred c----------------cccccceEEEEEEecC
Confidence 0 13444 6788888874
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-38 Score=281.70 Aligned_cols=263 Identities=18% Similarity=0.306 Sum_probs=207.4
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-----eeEEeeccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
.+..+|+||.+.|++|+|+|+++.+|+||+.||+|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.||
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 45678999999999999999865899999999999999987653 4567889999999999999999999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCC------------------CCCcee-------------EEEecCceEEEeeccCC--CEE
Q 013873 132 TVKLWNVPVATLTDSDDSTDN------------------SSEPLA-------------VYVWKNSFWAVDHQWEG--DLF 178 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~------------------~~~~~~-------------~~~~~~~~~~~~~~~~~--~~~ 178 (434)
.|++|+............... ...... ...+...+..+.+++++ .++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999865543211110000 000000 01123456677777654 455
Q ss_pred EEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 179 ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
++++ +.|++||+.+++.+..+..|...|.+++|+|++ .+|++|+.||.|++||++.......+
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~-------------- 253 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTL-------------- 253 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEE--------------
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeee--------------
Confidence 5554 569999999999999999999999999999988 79999999999999999877655443
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe--------ccCCccEEEEEEcCCCCE
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--------TKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~ 328 (434)
.+...|.+++|+|++.+ ++++.|+.|++||++++.....+. ..+...|++++|+|++++
T Consensus 254 ------------~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 254 ------------DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp ------------ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred ------------cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 34568999999998765 556679999999999887665542 235578999999999999
Q ss_pred EEEeeCCCcEEEeecCccc
Q 013873 329 VISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 329 l~s~~~dg~v~vw~~~~~~ 347 (434)
|++|+.||.|+|||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999885
No 27
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-39 Score=285.02 Aligned_cols=250 Identities=20% Similarity=0.251 Sum_probs=198.1
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcEEEe
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v~iw 136 (434)
.+.+|.+.|++++|+|+| .+||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 467999999999999998 999999999999999998764 4677899999999999986 48899999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCcc---eeeeecCCCceEEE
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQP---INSFQWGTDTVISV 209 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~~---~~~~~~~~~~i~~i 209 (434)
|+.++.. ........+...+.+++|+|+ +.++++++ +.|++||+..+.. ...+..|...+.++
T Consensus 87 d~~~~~~----------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 87 REENGTW----------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp CCSSSCC----------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred ECCCCcc----------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 9976532 011222345678999999998 77888876 5699999987632 34566788899999
Q ss_pred EEcCCC----------------CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC
Q 013873 210 RFNPAE----------------PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA 273 (434)
Q Consensus 210 ~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (434)
+|+|+. ..+|++|+.|+.|++||++...... ....+.+|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----------------------~~~~l~~h~~~ 214 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----------------------EEQKLEAHSDW 214 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----------------------EEECCBCCSSC
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----------------------eeeecccCCCc
Confidence 999973 2589999999999999986432111 11234589999
Q ss_pred eEEEEEccCC----CEEEEEeCCCcEEEEeCCCC---e-eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 274 VMDIDYSPTG----REFVTGSYDRTIRIFQYNGG---R-SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 274 i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
|.+++|+|++ .+|++|+.|++|++||+.+. . ....+. .+...|.+++|+|++++|++|+.||.|++|+..
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999986 78999999999999999763 1 112232 345789999999999999999999999999976
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-40 Score=298.27 Aligned_cols=290 Identities=17% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-------eeEE
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-------TVCQ 104 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-------~~~~ 104 (434)
+.|..+..........+++|+..+...+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+.. ....
T Consensus 74 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCCCSSTTCCB
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCccccCCccceee
Confidence 44444444444556678899999999999999999999999999999 999999999999999987532 3456
Q ss_pred eeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC
Q 013873 105 YSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG 182 (434)
Q Consensus 105 ~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 182 (434)
+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.....+.... ...+...+.++.+++ ++.++++++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF-------PSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS-------SSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc-------CCCCccCeEEEEeecCCCCEEEEEE
Confidence 7899999999999996 4579999999999999998775432211000 012456788888876 788888876
Q ss_pred --CeEEEEeCC-CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCC
Q 013873 183 --AQVDIWNHN-RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRK 259 (434)
Q Consensus 183 --~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.|++||++ ....+..+.+|...|.+++|+|++ .+|++|+.||+|++||++++.....+.....
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~------------ 292 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPD------------ 292 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCS------------
T ss_pred CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEeccccc------------
Confidence 679999998 457788899999999999999988 7999999999999999998765443311000
Q ss_pred CccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe---ccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 260 LDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH---TKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 260 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
....+...|++++|+|+|++|++|+.||.|++||+..++....+. ..|...|++++|+|+|.+|++|+.||
T Consensus 293 ------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 293 ------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp ------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 001234468999999999999999999999999999888766552 45668899999999999999999999
Q ss_pred cEEEeecCcccc
Q 013873 337 NLRLWKAKASEQ 348 (434)
Q Consensus 337 ~v~vw~~~~~~~ 348 (434)
.|++|++...+.
T Consensus 367 ~i~iW~~~~~~~ 378 (380)
T 3iz6_a 367 NLKIWAFSGHRK 378 (380)
T ss_dssp CEEEEECCSSSS
T ss_pred CEEEEecCCCcc
Confidence 999999986643
No 29
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-39 Score=298.84 Aligned_cols=275 Identities=17% Similarity=0.258 Sum_probs=194.5
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee--EEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEE
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQYSGHQGAVRGLTVST-DGRILVSCGTDCTVK 134 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~ 134 (434)
+.....+|...|+||+|+|.++.+||+|+.||+|+|||+.++... ..+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 345567899999999999976589999999999999999877543 44568999999999998 688999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEE---ecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
+||+++... ..... ....+.++++++++.++++++ +.|++||++ ++.+..+..|...|.++
T Consensus 191 iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 191 LQDFKGNIL-------------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEETTSCEE-------------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EeeccCCce-------------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999875422 11111 123467889999999999987 569999986 45677888999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceE---------------------EEeeecCceeEEEeeCCCCccceeeee
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARK---------------------VIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
+|+|++..+|++|+.||.|++||++....... .++.+..++.+.+|+.......... .
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~-~ 335 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL-I 335 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE-C
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE-e
Confidence 99999988999999999999999986543221 2333444555555555443322221 1
Q ss_pred Cccc------CeEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCeeeeEEeccCCccEEEE-EEcCCCCEE
Q 013873 269 GHES------AVMDIDYSPTGREFVTGS------------YDRTIRIFQYNGGRSREIYHTKRMQRVFCV-KFSCDASYV 329 (434)
Q Consensus 269 ~~~~------~i~~~~~sp~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l 329 (434)
.|.. .+....|+|++.++++++ .++.|++||..+++.+..+..++...|.++ +|+|+|++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 1111 122234444444444332 123455555555555555544555667776 699999999
Q ss_pred EEeeCCCcEEEeecCcccc
Q 013873 330 ISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 330 ~s~~~dg~v~vw~~~~~~~ 348 (434)
++|+ |+.|+||++++++.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 78999999998865
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=282.24 Aligned_cols=273 Identities=18% Similarity=0.271 Sum_probs=203.7
Q ss_pred HHHHHhhhhccc--cccccc-cC-CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-------CceeEEeeccCCCee
Q 013873 45 LTAAKLEKIFAR--PFIGAL-DG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-------RRTVCQYSGHQGAVR 113 (434)
Q Consensus 45 ~~~~~~~~~~~~--~~~~~l-~~-h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~ 113 (434)
...+++|++... ..+..+ .+ |.+.|.+++|+|++ .+|++|+.||+|+|||+.. .+.+..+.+|...|.
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 344566666543 334445 44 99999999999998 9999999999999999853 345677889999999
Q ss_pred EEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee-EEEecCceEEEeeccCCCEEEEeC--CeEEEEeC
Q 013873 114 GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA-VYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (434)
+++|+|++++|++|+.|++|++||+...... ..... ...+...+.++.|+|++.++++++ +.|++||.
T Consensus 112 ~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEE---------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182 (330)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEECCTTCCC---------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeccCCCCC---------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999999999999999999533110 11222 234567899999999999999886 67999998
Q ss_pred CCC--cceeeeecCCCceEEEEEcCCC-CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 191 NRS--QPINSFQWGTDTVISVRFNPAE-PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 191 ~~~--~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
.++ +++..+.+|...|.+++|+|++ ..+|++|+.|++|++||++......... ......+
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-----------------~~~~~~~ 245 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE-----------------WVCEAIL 245 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE-----------------EEEEEEC
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce-----------------eEEeeec
Confidence 776 6778889999999999999983 2689999999999999987543211000 0011122
Q ss_pred e-CcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--eeEEeccCCc-cEEEEEEcC--CCCEEEEeeCCCcEEEe
Q 013873 268 M-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQ-RVFCVKFSC--DASYVISGSDDTNLRLW 341 (434)
Q Consensus 268 ~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~v~vw 341 (434)
. .|...|.+++|++++ +|++++.||.|++||..++.. .......|.. .|.+++|+| ++++|++|+.||.|++|
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 2 388999999999765 899999999999999987742 2223233434 899999999 78999999999999999
Q ss_pred ecCc
Q 013873 342 KAKA 345 (434)
Q Consensus 342 ~~~~ 345 (434)
++..
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-38 Score=287.19 Aligned_cols=270 Identities=18% Similarity=0.379 Sum_probs=216.9
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC------------------CeeEEEEcCCCCeEE
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG------------------AVRGLTVSTDGRILV 125 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~i~~~~~~~~l~ 125 (434)
+|.+.|+|++|+|+| .+||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 62 ~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 699999999999999 8999987 68999999999998887765532 499999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+|+.||.|++||+.++.. ......+...+.+++|+|++..+++++ +.|++||+.+++....+.. .
T Consensus 140 s~~~d~~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~ 206 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKI------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-E 206 (393)
T ss_dssp EEETTSCEEEEETTTTEE------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-S
T ss_pred EEcCCCeEEEEECCCCcE------------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-C
Confidence 999999999999976632 222334667899999999999998876 5799999999988777764 5
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
..+.+++|+|.++.+|++|+.||.|++||+++......+.. ......+|...|++++|+|+|
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~------------------~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------------------ENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------CCCSSCEEEEEECTTS
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc------------------cccCCCCCCCCEEEEEECCCC
Confidence 67999999995448999999999999999987765443310 011124789999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCe------------eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 284 REFVTGSYDRTIRIFQYNGGR------------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
++|++|+.|+.|++||+.+.. +...+. .|...|.+++|+|++.+|++|+.||.|++||+.+++.+..
T Consensus 269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 999999999999999997643 222333 4457899999999999999999999999999999887765
Q ss_pred CChhhhhhhHHHHHHHHhhccchhhhhhhhccC
Q 013873 352 LHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRH 384 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 384 (434)
+. +|...|.++++++.
T Consensus 348 l~-----------------~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 348 LQ-----------------GHRNSVISVAVANG 363 (393)
T ss_dssp EE-----------------CCSSCEEEEEECSS
T ss_pred EC-----------------CCCCCEEEEEecCC
Confidence 53 56677777777663
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-37 Score=277.61 Aligned_cols=276 Identities=17% Similarity=0.205 Sum_probs=234.3
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
..|.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4579999999999999998 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCc-----------ceeeeec
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQ-----------PINSFQW 201 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~-----------~~~~~~~ 201 (434)
++ .......+...+.++.++|++..+++++ +.+.+||+.... .+..+..
T Consensus 105 ~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 105 NG-------------QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TC-------------CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CC-------------cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 76 3444555778899999999999988864 579999987654 3344444
Q ss_pred CCC--ceEEEEEcCCCCcEEEEEecCCcEEEEEccC-CCcceE------------------EEeeecCceeEEEeeCCCC
Q 013873 202 GTD--TVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARK------------------VIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 202 ~~~--~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 260 (434)
+.. .+.+++|+|++ .+|++++.||.|++||++. ...... .++.+..++.+.+||....
T Consensus 172 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 555 89999999988 7899999999999999987 322221 2444677889999998765
Q ss_pred ccceeeeeCcccCeEEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR--------------TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
...... .+...+.+++|+|+++++++++.++ .+++||+.+++....+..+. ..|++++|+|++
T Consensus 251 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~ 327 (369)
T 3zwl_B 251 QVLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF-GPLNTVAISPQG 327 (369)
T ss_dssp CEEEEE--ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS-SCEEEEEECTTS
T ss_pred ceeeee--cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc-CcEEEEEECCCC
Confidence 443332 2778899999999999999999988 89999999999888776554 889999999999
Q ss_pred CEEEEeeCCCcEEEeecCcccccccCC
Q 013873 327 SYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 327 ~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
++|++++.||.|++|++..+.....+.
T Consensus 328 ~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp SEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred CEEEEEcCCCeEEEEECccccchhHHH
Confidence 999999999999999999887665553
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6e-38 Score=285.59 Aligned_cols=292 Identities=16% Similarity=0.182 Sum_probs=234.7
Q ss_pred HHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--ccCCCeeEEEEcC-C
Q 013873 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVST-D 120 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~-~ 120 (434)
......++.....++...+.+|.+.|++++|+|++..+|++|+.||.|++||+.+++....+. +|...|.+++|+| +
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 51 CLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE
T ss_pred hhhccccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC
Confidence 344455666667778889999999999999999976799999999999999999888777765 6999999999999 7
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE---ecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP 195 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~ 195 (434)
+.+|++++.||.|++||+.... ...... +...+.+++++|++.++++++ +.|.+||+ +++.
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCEEEEEeCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 8999999999999999997431 111111 235689999999999999886 57999999 5778
Q ss_pred eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
+..+..|...|.+++|+|++..+|++++.||.|++||++........ ... .+|...|+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------~~~-~~~~~~v~ 254 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY---------------------IAE-MPHEKPVN 254 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE---------------------EEE-EECSSCEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce---------------------EEE-ecCCCceE
Confidence 88999999999999999999559999999999999999875432211 111 26889999
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC----------------CccEEEEEEcCCCCEEEEeeCCCcE
Q 013873 276 DIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKR----------------MQRVFCVKFSCDASYVISGSDDTNL 338 (434)
Q Consensus 276 ~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~s~~~dg~v 338 (434)
+++|+| ++++|++++.|+.|++||+.++.....+..+. ...+..++|+|++++ +|+.||.|
T Consensus 255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i 332 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI 332 (383)
T ss_dssp EEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred EEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE
Confidence 999999 99999999999999999999877655553221 134555777777776 77899999
Q ss_pred EEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 339 RLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 339 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
++||+.+++.+..+..+ .+...+..++|+|....+
T Consensus 333 ~iwd~~~~~~~~~l~~~---------------~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 333 DIYDANSGGLVHQLRDP---------------NAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp EEEETTTCCEEEEECBT---------------TBCSCCCEEEECTTSSEE
T ss_pred EEEecCCCceeeeecCC---------------CCCceEEEEEEecCccEE
Confidence 99999999988777532 245566767888876644
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-38 Score=284.38 Aligned_cols=260 Identities=20% Similarity=0.285 Sum_probs=213.4
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--CCceeEEeeccCCCeeEEEEcCC--CCeEEEeeCCCc
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCT 132 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~dg~ 132 (434)
.++..+.+|.+.|++++|+|++ .+|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4567889999999999999998 999999999999999998 56677788999999999999976 899999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCc--ceeeeecCCCce
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQ--PINSFQWGTDTV 206 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i 206 (434)
|++||+.++.. ........+...+.+++|+|+ +.++++++ +.|++||+.... ....+..|...|
T Consensus 81 v~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 81 VLIWKEENGRW----------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEEEETTEE----------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEEEcCCCce----------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999976631 012222335678999999999 88888876 679999998874 345567788999
Q ss_pred EEEEEcCC------------CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 207 ISVRFNPA------------EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 207 ~~i~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
.+++|+|. ++.+|++++.||.|++||++........ ...+.+|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------~~~~~~h~~~v 209 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------------------ESTLEGHSDWV 209 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE---------------------EEEECCCSSCE
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee---------------------EEEEecccCcE
Confidence 99999994 2389999999999999999876544322 12345799999
Q ss_pred EEEEEccC---CCEEEEEeCCCcEEEEeCCCCee---eeEE-eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 275 MDIDYSPT---GREFVTGSYDRTIRIFQYNGGRS---REIY-HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 275 ~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~---~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.+++|+|+ +++|++++.||.|++||+.++.. .... ...+...|++++|+|++++|++++.||.|++|++..+.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999 89999999999999999988642 1111 22355789999999999999999999999999998654
Q ss_pred c
Q 013873 348 Q 348 (434)
Q Consensus 348 ~ 348 (434)
.
T Consensus 290 ~ 290 (379)
T 3jrp_A 290 K 290 (379)
T ss_dssp E
T ss_pred c
Confidence 3
No 35
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=280.21 Aligned_cols=290 Identities=19% Similarity=0.303 Sum_probs=229.9
Q ss_pred hhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCCCceeEEee-----------
Q 013873 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYS----------- 106 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------- 106 (434)
..+.......++|..........+.+|.+.|++++|+| ++ .+|++|+.||.|++||+.++.....+.
T Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 16 LRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred cceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence 34455666788999988888899999999999999999 87 999999999999999999886655443
Q ss_pred --ccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC---CEEEE
Q 013873 107 --GHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG---DLFAT 180 (434)
Q Consensus 107 --~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 180 (434)
+|...|.+++|+| ++.+|++++.||.|++||+.++ ...........+.++.+.+.+ .++++
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-------------QTADVFNFEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-------------EEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-------------ccceeccCCCceeeeEeecCCCCCcEEEE
Confidence 5999999999999 7789999999999999999866 344555567788888888854 47777
Q ss_pred eC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++ +.|.+||+.+++.+..+..|...|.+++|+|++..+|++|+.||.|++||++............ ...
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~ 232 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH---------NGK 232 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT---------TTC
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc---------ccc
Confidence 65 6799999999999999999999999999999996689999999999999998765322211000 000
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee--------------------------------
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-------------------------------- 306 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------- 306 (434)
..........+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 111122233578899999999999999999999999999998765422
Q ss_pred ---------------eEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 307 ---------------EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 307 ---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
..+ ..|...|++++|+|++++|++|+.||.|++|++.+++.+...
T Consensus 313 ~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred CCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 222 235578999999999999999999999999999998876544
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.3e-38 Score=277.63 Aligned_cols=273 Identities=19% Similarity=0.329 Sum_probs=226.4
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (434)
+.|..+..........+++|+.....+...+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++.+..+.+|...
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 109 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 109 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 34444444444445567888888888999999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEe
Q 013873 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (434)
|.+++|+|++++|++|+.||.|++||+.++.. ......+...+.++.++|++.++++++ +.|++||
T Consensus 110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCE------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999999999999999987632 222233556899999999999998886 6799999
Q ss_pred CCCCcceeeee-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 190 HNRSQPINSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 190 ~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
+.+++.+..+. .+...+..++|+|++ .+|++++.||.|++||+++......+ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------------~ 231 (312)
T 4ery_A 178 TASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTY-------------------------T 231 (312)
T ss_dssp TTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEE-------------------------C
T ss_pred CCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE-------------------------E
Confidence 99998877664 355679999999998 78999999999999999876554332 2
Q ss_pred CcccC---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee--CCCcEEEeec
Q 013873 269 GHESA---VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDTNLRLWKA 343 (434)
Q Consensus 269 ~~~~~---i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~ 343 (434)
+|... +......+++.+|++|+.||.|++||+.+++....+..+. ..|.+++|+|++.+|++++ .||.|++|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT-DVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC-CcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 34333 2223334678999999999999999999998887776554 7899999999999999987 6999999986
Q ss_pred C
Q 013873 344 K 344 (434)
Q Consensus 344 ~ 344 (434)
+
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.2e-37 Score=293.34 Aligned_cols=304 Identities=24% Similarity=0.408 Sum_probs=250.8
Q ss_pred HHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE
Q 013873 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV 125 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 125 (434)
..+++|+. ..+.+..+.+|...|++++|+|++ ..|++++.|+.|++||. +++....+.+|...|.+++|+|++++|+
T Consensus 243 ~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 243 KTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp SCEEEECT-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEE
Confidence 34556664 456778899999999999999998 89999999999999996 5677788899999999999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+++.||.|++||+.... ......+...+.+++++|++..+++++ +.+++||. +++.+..+..|.
T Consensus 320 t~~~d~~i~~w~~~~~~-------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~ 385 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQH-------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 385 (577)
T ss_dssp EEETTSCEEEEETTSCE-------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS
T ss_pred EEeCCCeEEEEeCCCCe-------------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC
Confidence 99999999999976442 223334567889999999999998876 57999995 567788889999
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC-----------------cceEEEeeecCceeEEEeeCCCCccceee
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-----------------PARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
..|.+++|+|++ .+|++++.|+.|++||..... +....+..+..++.+.+|+.. ......
T Consensus 386 ~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~ 462 (577)
T 2ymu_A 386 SSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQT 462 (577)
T ss_dssp SCEEEEEECTTS-SCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEE
T ss_pred CCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEE
Confidence 999999999998 789999999999999964321 111234456778889999854 345566
Q ss_pred eeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 267 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 267 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
+.+|...|++++|+|++++|++++.|+.|++||. +++....+..+ ...|++++|+|++++|++++.||.|++||. ++
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~ 539 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 539 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence 7799999999999999999999999999999996 56666666544 488999999999999999999999999996 46
Q ss_pred cccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 347 EQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
+.+..+ .+|...|.+++|.|....++
T Consensus 540 ~~~~~~-----------------~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 540 QLLQTL-----------------TGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp CEEEEE-----------------ECCSSCEEEEEECTTSSCEE
T ss_pred CEEEEE-----------------cCCCCCEEEEEEcCCCCEEE
Confidence 665544 26888899999998765443
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-37 Score=280.92 Aligned_cols=268 Identities=17% Similarity=0.248 Sum_probs=225.5
Q ss_pred HHHHHhhhhccccccccccC-CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCe
Q 013873 45 LTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 123 (434)
...+.+|+..++.....+.. |...|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~ 188 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHV 188 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTE
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCE
Confidence 34567888877777766655 89999999999998 99999999999999999999999999999999999999 4579
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeec
Q 013873 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW 201 (434)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~ 201 (434)
|++++.||.|++||+.... ........+...+.+++++|++.++++++ +.|++||+.+++.+..+..
T Consensus 189 l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 257 (401)
T 4aez_A 189 LSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257 (401)
T ss_dssp EEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred EEEEcCCCCEEEEecccCc-----------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence 9999999999999997442 12334445677899999999999999886 6799999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEe--cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 202 GTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
|...|.+++|+|++..++++++ .||.|++||+++......+ .+...|.+++|
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--------------------------~~~~~v~~~~~ 311 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--------------------------DAGSQVTSLIW 311 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--------------------------ECSSCEEEEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--------------------------eCCCcEEEEEE
Confidence 9999999999999888888876 7999999999887665443 35678999999
Q ss_pred ccCCCEEEEE--eCCCcEEEEeCCCCeeeeEE-eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 280 SPTGREFVTG--SYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 280 sp~~~~l~~~--~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+|++++|+++ +.||.|++||+.++...... ...|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999995 48999999999987665543 2345588999999999999999999999999999998876544
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.6e-37 Score=279.46 Aligned_cols=271 Identities=11% Similarity=0.152 Sum_probs=224.2
Q ss_pred ccCCCCCeEEEEeCCC---CCceEEeeeCCCcEEEEeCCCCceeEEeec-----cCCCeeEEEEcCC----CCeEEEeeC
Q 013873 62 LDGHRDGISCMAKNPN---YLKGFFSGSMDGDIRLWDIANRRTVCQYSG-----HQGAVRGLTVSTD----GRILVSCGT 129 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~i~~~~~----~~~l~s~~~ 129 (434)
..+|.+.|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +.+|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4689999999999984 436677777788999999998887776654 5578999999998 679999999
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeee---ecCC
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSF---QWGT 203 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~---~~~~ 203 (434)
||.|++||+.++.. ......+...+.+++|+| ++.++++++ +.|++||+.+++.+..+ ..|.
T Consensus 94 dg~i~v~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 94 RGIIRIINPITMQC------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TCEEEEECTTTCCE------------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CCEEEEEEchhceE------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 99999999987632 223334678999999999 899888876 67999999999988887 6789
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc--------------------------------------------
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-------------------------------------------- 239 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------------- 239 (434)
..|.+++|+|++ .+|++++.||.|++||++.....
T Consensus 162 ~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 162 DEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred CceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 999999999988 78999999999999999864321
Q ss_pred eEEEeeecCceeEEEeeCCCCcc-------------ceeeeeCcccCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCe
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDE-------------AKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
..+.+.+..++.+.+|+...... ....+..|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 23456678899999999876532 35566788999999999999 9999999999999999999876
Q ss_pred eee----EEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 305 SRE----IYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 305 ~~~----~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
... .+..+ +...|++++|+|++++|++|+.||.|++||+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 432 34333 258899999999999999999999999999853
No 40
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.8e-37 Score=274.26 Aligned_cols=265 Identities=20% Similarity=0.278 Sum_probs=212.2
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcC--CCCeEEEeeCCCcE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTV 133 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~v 133 (434)
..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.++ +....+.+|...|++++|+| ++.+|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4568999999999999998 89999999999999999876 46677889999999999999 68999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCcceeeee---------
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQPINSFQ--------- 200 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~~~~~~~--------- 200 (434)
++||+..+......... ........+...+.+++|+|+ +.++++++ +.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRW---NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp EEEEECTTSCTTSSCSE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred EEEecCCCcccccccCc---ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999876432110000 012222345678999999999 99888876 679999999887655443
Q ss_pred ----cCCCceEEEEEcCC--CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 201 ----WGTDTVISVRFNPA--EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 201 ----~~~~~i~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
.+...+.+++|+|+ .+.+|++++.|+.+.+|+........ ...+.+|...|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~~~i 217 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-----------------------AAKLPGHKSLI 217 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE-----------------------EEECCCCCSCE
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee-----------------------eeecCCCCcce
Confidence 46778999999997 34799999999999777765543211 12345799999
Q ss_pred EEEEEccCC----CEEEEEeCCCcEEEEeCCCC----------------------------------------------e
Q 013873 275 MDIDYSPTG----REFVTGSYDRTIRIFQYNGG----------------------------------------------R 304 (434)
Q Consensus 275 ~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~----------------------------------------------~ 304 (434)
++++|+|++ ++|++|+.||.|++||+..+ .
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 999999998 89999999999999999864 2
Q ss_pred eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 305 SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
....+. .|...|++++|+|++++|++|+.||.|++|++.+++.+..+
T Consensus 298 ~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 298 LLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 333333 34578999999999999999999999999999988665433
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-36 Score=270.05 Aligned_cols=267 Identities=19% Similarity=0.314 Sum_probs=224.2
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce---eEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---VCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
...+|.+.|++++|+|++ .+|++++ ||.|++||+.++.. ...+. .|...|.+++|+|++++|++++.||.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 345899999999999998 8999998 99999999987653 23333 78999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 213 (434)
||+.++.. ........+...+.+++++|++.++++++ +.|.+||+.+++.+..+..|...+.+++|+|
T Consensus 124 ~d~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 124 WDLAAPTP----------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EECCCCCc----------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 99976631 11223334566799999999999988876 6799999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceE-----------------EEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARK-----------------VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
++ .+|++++.||.|++||++....... ....+..++.+++|+...... .....|...|.+
T Consensus 194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~~ 270 (337)
T 1gxr_A 194 DG-TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLS 270 (337)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEEE
T ss_pred CC-CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCccceeE
Confidence 88 7899999999999999987654332 233466678888998876543 355689999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 277 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
++|+|++++|++++.||.|++||+.+++..... .+...+.+++|+|++++|++++.||.|++|++.
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999999999999999999999999998876443 344789999999999999999999999999963
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-36 Score=288.89 Aligned_cols=274 Identities=25% Similarity=0.433 Sum_probs=230.2
Q ss_pred HHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE
Q 013873 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 126 (434)
.+++|+. ....+..+.+|...|.+++|+|++ .+|++++.||+|++||... ..+..+.+|...|.+++|+|++++|++
T Consensus 285 ~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 285 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp CEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEeC-CCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 3455654 456677889999999999999998 9999999999999999764 556778899999999999999999999
Q ss_pred eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCC
Q 013873 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTD 204 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~ 204 (434)
++.||.|++||.... .......+...+.+++++|++.++++++ +.|++||. +++.+..+..|..
T Consensus 362 ~~~dg~v~~~~~~~~-------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~ 427 (577)
T 2ymu_A 362 ASDDKTVKLWNRNGQ-------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 427 (577)
T ss_dssp EETTSEEEEEETTCC-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS
T ss_pred EeCCCEEEEEcCCCC-------------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC
Confidence 999999999996422 2223344667899999999999998875 56999995 5677888899999
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC-----------------cceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSS-----------------PARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
.|.+++|+|++ .+|++++.|+.|++||..... +...++..+..++.+.+|+.. ......+
T Consensus 428 ~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~ 504 (577)
T 2ymu_A 428 SVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL 504 (577)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred CeEEEEECCCC-CEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEE
Confidence 99999999988 799999999999999975321 112234457788899999953 4566677
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
.+|...|++++|+|+|++|++++.|+.|++||. +++.+..+.. |...|++++|+||+++|++++.||.|++||
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~-h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 899999999999999999999999999999996 4666666654 458999999999999999999999999997
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-36 Score=278.83 Aligned_cols=276 Identities=16% Similarity=0.202 Sum_probs=225.6
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc------eeEEeeccCCCeeEEEEcCC----C---CeE
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSGHQGAVRGLTVSTD----G---RIL 124 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~i~~~~~----~---~~l 124 (434)
....+.+|.+.|++++|+| .+|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ + .+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 4567899999999999998 689999999999999999887 78888999999999999999 9 999
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE-Ee-----cCceEEEeec----cCCCE-EEEeC--CeEEEEeCC
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY-VW-----KNSFWAVDHQ----WEGDL-FATAG--AQVDIWNHN 191 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~----~~~~~-~~~~~--~~i~i~d~~ 191 (434)
++++.||.|++||+.++.... ....... .+ ...+.+++|+ |++.. +++++ +.|++||+.
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETK--------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTC--------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccc--------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 999999999999998764200 0002222 23 3789999999 99998 88775 679999999
Q ss_pred C------Cccee-----eee-------cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEE----------
Q 013873 192 R------SQPIN-----SFQ-------WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI---------- 243 (434)
Q Consensus 192 ~------~~~~~-----~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 243 (434)
. ++.+. .+. .|...|.+++|+|++ +|++++.||.|++||++.......+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 8 66666 663 478899999999987 89999999999999998654433322
Q ss_pred --------------eeecCc---eeEEEeeCCCCccceeeeeC-------------cccCeEEEEEccCCCEEEEEeCCC
Q 013873 244 --------------MRANED---CNCYSYDSRKLDEAKCVHMG-------------HESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 244 --------------~~~~~~---~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
+.+..+ +.+.+||.+... ....+.+ |...|.+++|+|++++|++++.||
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 225566 889999987653 3445556 999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeEEe------cc--------------CCccEEEEEEcCCC----------CEEEEeeCCCcEEEeec
Q 013873 294 TIRIFQYNGGRSREIYH------TK--------------RMQRVFCVKFSCDA----------SYVISGSDDTNLRLWKA 343 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~~~~s~~~----------~~l~s~~~dg~v~vw~~ 343 (434)
.|++||+.+++....+. .+ |...|++++|+|++ ++|++|+.||.|++|++
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999888876 33 15889999999998 79999999999999999
Q ss_pred Cccc
Q 013873 344 KASE 347 (434)
Q Consensus 344 ~~~~ 347 (434)
.+++
T Consensus 394 ~~g~ 397 (397)
T 1sq9_A 394 AGGK 397 (397)
T ss_dssp EC--
T ss_pred CCCC
Confidence 8763
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=283.20 Aligned_cols=276 Identities=16% Similarity=0.294 Sum_probs=226.2
Q ss_pred HHHHhhhhcccc---ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC----CceeEEeeccCCCeeEEEEc
Q 013873 46 TAAKLEKIFARP---FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLTVS 118 (434)
Q Consensus 46 ~~~~~~~~~~~~---~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~i~~~ 118 (434)
..+++|++.... .+..+ .|...|++++|+|++ .+|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 345677766553 33333 689999999999998 8999999999999999987 45788889999999999999
Q ss_pred CC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEeC--CeEEEEeCCCCc
Q 013873 119 TD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQ 194 (434)
Q Consensus 119 ~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~ 194 (434)
|+ +.+|++++.||.|++||+.+.......... ........+...+.+++|+|+ +.++++++ +.|++||+.+++
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 199 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK 199 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC---BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccc---cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence 98 899999999999999999877521100000 001111235668899999999 78888876 569999999999
Q ss_pred ceeeeecC------CCceEEEEEcCCCCcEEEEEecCC---cEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccce
Q 013873 195 PINSFQWG------TDTVISVRFNPAEPNVLATTASDR---SITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 195 ~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~~dg---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
.+..+..+ ...+.+++|+|++..+|++++.|+ .|++||++... +..
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~------------------------ 255 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ------------------------ 255 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB------------------------
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE------------------------
Confidence 98888876 788999999999878999999999 99999998753 222
Q ss_pred eeee-CcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC-CEEEEeeCCCcEEEe
Q 013873 265 CVHM-GHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLW 341 (434)
Q Consensus 265 ~~~~-~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw 341 (434)
.+. +|...|++++|+| ++++|++++.||.|++||+.+++.+..+..+. ..|++++|+|++ .+|++++.||.|++|
T Consensus 256 -~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 256 -TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG-NWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp -CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS-SCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred -EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC-CceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 234 6899999999999 99999999999999999999998887776544 789999999999 899999999999999
Q ss_pred ecCcccccccC
Q 013873 342 KAKASEQLGVL 352 (434)
Q Consensus 342 ~~~~~~~~~~~ 352 (434)
++.++......
T Consensus 334 ~~~~~~~~~~~ 344 (416)
T 2pm9_A 334 TLQNLTNTLDE 344 (416)
T ss_dssp ESCCCCCSSCC
T ss_pred EccCCCCCccc
Confidence 99988765443
No 45
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=263.05 Aligned_cols=279 Identities=17% Similarity=0.251 Sum_probs=229.3
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
..+++..+.+|.+.|++++| |++ .+|++|+.||.|++||+.++.....+..|...|.+++|+|++++|++++.||.|+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34677889999999999999 887 8999999999999999999998899999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEc
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 212 (434)
+|++...... ........+...+.++.+ ++..+++++ +.+++|| .++.+..+..|...+.+++|+
T Consensus 85 ~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 85 GVPLFATSGE---------DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV 151 (313)
T ss_dssp EEETTCCTTS---------CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEE
T ss_pred EEEeeecCCC---------CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEc
Confidence 9999765321 112223345678888888 455666664 6799999 677888888999999999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCC---------cceE-------EEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSS---------PARK-------VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
|....++++++.||.|++||..... .... ..+.+..++.+.+||.+.. .....+.+|...|++
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYC 230 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred cCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch-hhhhhhhcCCceEEE
Confidence 9444899999999999999954211 0110 1445778889999998764 455566789999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 277 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
++|+|++ .|++++.||.|++||+.+++....+..+. ..|.+++|+|+++ +++++.||.|++|++.+++.+...
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA-ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS-SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC-ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999 68999999999999999999888776554 7899999999998 567889999999999998776544
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-36 Score=295.36 Aligned_cols=257 Identities=18% Similarity=0.328 Sum_probs=215.6
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-----ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-----RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
....+.+|.+.|++++|+|++..+|++|+.||+|++||+.+. .....+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345689999999999999987689999999999999998764 345678899999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeee---ecCCCceE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF---QWGTDTVI 207 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~---~~~~~~i~ 207 (434)
|++||+.++. .......|...+.+++|+|++..+++++ +.|++||.......... ..|...|.
T Consensus 454 v~vwd~~~~~------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 454 LRLWDLAAGV------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EEEEETTTTE------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred EEEEECCCCc------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 9999998763 2334455778899999999999998886 56999998665433222 35788899
Q ss_pred EEEEcCCCC-cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 208 SVRFNPAEP-NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 208 ~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
+++|+|++. ..|++|+.||.|++||++...... .+.+|.+.|++++|+|+|++|
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-------------------------~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-------------------------TLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-------------------------EECCCSSCEEEEEECTTSSEE
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-------------------------EEcCCCCCEEEEEEeCCCCEE
Confidence 999999863 589999999999999998765433 335899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 287 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++ |+.|++||+.+++.+..+..
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECC
T ss_pred EEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcc
Confidence 9999999999999999987766543 36799999999999888776 55699999999988776653
No 47
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=271.22 Aligned_cols=277 Identities=17% Similarity=0.203 Sum_probs=216.1
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeC---CCcEEEEeCCCCceeEEe-eccCCCeeEEEEcCC---CCeEEEeeCCC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQY-SGHQGAVRGLTVSTD---GRILVSCGTDC 131 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~---~~~l~s~~~dg 131 (434)
...+.+|.+.|++++|+|++..++++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34558899999999999998556677776 999999999988765443 369999999999998 69999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE------eeccCCCEEEEeC--CeEEEEeCCCCc-ceeeeecC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV------DHQWEGDLFATAG--AQVDIWNHNRSQ-PINSFQWG 202 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~~~~~ 202 (434)
.|++||+.++.. .......+...+.++ ++++++..+++++ +.|++||+.+++ ++..+..+
T Consensus 91 ~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 91 NLHIWNLEAPEM-----------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CEEEECTTSCSS-----------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred eEEEEeCCCCCc-----------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 999999987641 122233456678888 5678999998876 579999999887 67777665
Q ss_pred CC----ceEEEE----EcCCCCcEEEEEecCCcEEEEEccCCCc--------------------ceEEEeeecCceeEEE
Q 013873 203 TD----TVISVR----FNPAEPNVLATTASDRSITLYDLRMSSP--------------------ARKVIMRANEDCNCYS 254 (434)
Q Consensus 203 ~~----~i~~i~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~~~ 254 (434)
.+ .+.+++ |+|++ .+|++++.||.|++||++.... .....+.+..++.+.+
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 44 788888 67777 7999999999999999987532 2334555677888888
Q ss_pred eeCCCCcccee----eeeCcccCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe-------------------eeeEEe
Q 013873 255 YDSRKLDEAKC----VHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGGR-------------------SREIYH 310 (434)
Q Consensus 255 ~~~~~~~~~~~----~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~ 310 (434)
|+.+....... ...+|...|++++|+|+++ +|++|+.||.|++||+..+. .+..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 88765433222 2348999999999999998 89999999999999997643 233333
Q ss_pred ccCCccEEEEEEcCCCCEEE-EeeCCCcEEEeecCcccc
Q 013873 311 TKRMQRVFCVKFSCDASYVI-SGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 311 ~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~vw~~~~~~~ 348 (434)
.|...|++++|+|++++|+ +++.||.|++|++.+.+.
T Consensus 319 -~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 319 -LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred -cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 3458899999999999998 899999999999987654
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-37 Score=279.27 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=212.3
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
+..|.+.|++++|+|++ .+|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 45699999999999998 999999999999999999887 788899999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc---e-eeeecCCCceEEEEEcC
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP---I-NSFQWGTDTVISVRFNP 213 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~---~-~~~~~~~~~i~~i~~~~ 213 (434)
++... .......+...+.+++++|++.++++++ +.+++||+..+.. . .....|...|.+++|+|
T Consensus 83 ~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 83 GRTWK----------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp TTEEE----------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred CCeee----------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 65321 1112233567899999999999998886 5699999988763 2 23355788999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeC-CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDS-RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
++ .+|++++.||.|++||++......... ...|.. .........+.+|...|.+++|+|++++|++++.|
T Consensus 153 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 153 NS-VLLAAGSCDFKCRIFSAYIKEVEERPA--------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp TS-SEEEEEETTSCEEEEECCCTTTSCCCC--------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CC-CEEEEEcCCCCEEEEEccccccccccc--------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 88 799999999999999986432211000 000000 01123334455789999999999999999999999
Q ss_pred CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
+.|++||+.+++....+..+ ...|.+++|+|++.+|++| .||.|++|++.+
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999888777654 3789999999999988887 899999999987
No 49
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.8e-36 Score=274.12 Aligned_cols=265 Identities=22% Similarity=0.323 Sum_probs=223.4
Q ss_pred HHHHHhhhhccccccccc--cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 45 LTAAKLEKIFARPFIGAL--DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
.+.+++|+..++..+..+ .+|.+.|++|+|+|+| .+|++|+.||+|+|||+.+++.+..+.+|...+.+++|+ +.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~ 200 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY 200 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC
Confidence 345778988888876655 5788899999999999 999999999999999999999999999999999998875 67
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc----ce
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ----PI 196 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~----~~ 196 (434)
+|++|+.|+.+++||...... .......+...+..+.+++++..+++++ +.+.+|+...++ .+
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~-----------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEH-----------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred EEEEEeCCCceeEeeecccce-----------eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence 999999999999999876531 2233445677899999999999999886 569999998765 34
Q ss_pred eeeecCCCceEEEEEcCCCCcEEEEE--ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 197 NSFQWGTDTVISVRFNPAEPNVLATT--ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 197 ~~~~~~~~~i~~i~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
.....|...|.+++|+|.+..+++++ +.|+.|++||+.++.....+ .+...+
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--------------------------~~~~~v 323 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------------------------DAHSQV 323 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--------------------------ECSSCE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--------------------------ccccce
Confidence 56677889999999999988888765 47999999999887665544 345678
Q ss_pred EEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 275 MDIDYSPTGREFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
.++.|+|+++.+++++ .|+.|+|||+.+++++..+.. |.+.|++++|+|||++|++|+.||+|+|||+.......
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999999988765 789999999999999888865 45899999999999999999999999999997765543
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-36 Score=294.35 Aligned_cols=262 Identities=22% Similarity=0.296 Sum_probs=213.7
Q ss_pred HHHHHhhhhccc-----cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcC
Q 013873 45 LTAAKLEKIFAR-----PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119 (434)
Q Consensus 45 ~~~~~~~~~~~~-----~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 119 (434)
...+++|++... .....+.+|...|.+++|+|++ .+|++|+.||+|+|||+.++.....+.+|...|.+++|+|
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 482 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC
Confidence 344566665432 2346789999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC--CEEEEeC--CeEEEEeCCCCcc
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAG--AQVDIWNHNRSQP 195 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~i~i~d~~~~~~ 195 (434)
++++|++|+.|++|++||+........... ...+...+.++.++|++ ..+++++ +.|++||+.+++.
T Consensus 483 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 483 DNRQIVSASRDRTIKLWNTLGECKYTISEG---------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSS---------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEeCCCEEEEEECCCCcceeeccC---------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 999999999999999999754321100000 01245568999999987 4666664 6799999999999
Q ss_pred eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
...+.+|...|.+++|+|++ .+|++|+.||.|++||+++......+ .+...|.
T Consensus 554 ~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~--------------------------~~~~~v~ 606 (694)
T 3dm0_A 554 RSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSL--------------------------EANSVIH 606 (694)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECC--------------------------BCSSCEE
T ss_pred EEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEe--------------------------cCCCcEE
Confidence 99999999999999999988 79999999999999999877544322 3456799
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC------------------CccEEEEEEcCCCCEEEEeeCCCc
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR------------------MQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
+++|+|++.+|++++ |+.|++||+.++.....+.... ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 999999998887776 6669999999988776553211 113789999999999999999999
Q ss_pred EEEeecC
Q 013873 338 LRLWKAK 344 (434)
Q Consensus 338 v~vw~~~ 344 (434)
|+||++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999985
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-36 Score=300.77 Aligned_cols=276 Identities=19% Similarity=0.312 Sum_probs=236.8
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.+.+.+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4557789999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC-cceeeeecCCCceEEEEEcC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNP 213 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~ 213 (434)
|+.++. .......+...+.+++|+|++..+++++ +.|.+||+.++ .....+..|...|.+++|+|
T Consensus 83 ~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 83 NYNTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp ETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred ECCCCc------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 998763 2233344677899999999999888876 67999999887 66778888999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc--CCCEEEEEeC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP--TGREFVTGSY 291 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~~~~l~~~~~ 291 (434)
.++..|++++.||.|++||+........+. ..+...+.+++|+| ++.+|++++.
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT------------------------TGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEE------------------------CCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEe------------------------cCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 444899999999999999998766554432 24558899999999 9999999999
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhc
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYK 371 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
||.|++||+.++.....+..+ ...|++++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 207 dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----------------- 268 (814)
T 3mkq_A 207 DLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV----------------- 268 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC-----------------
T ss_pred CCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-----------------
Confidence 999999999999887777554 47899999999999999999999999999999887766642
Q ss_pred cchhhhhhhhccCCCh
Q 013873 372 HLPEIKRIVRHRHLPK 387 (434)
Q Consensus 372 ~~~~v~~~~~~~~~~~ 387 (434)
+...+..++|+|....
T Consensus 269 ~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 269 GLERSWCIATHPTGRK 284 (814)
T ss_dssp SSSSEEEEEECTTCGG
T ss_pred CCCcEEEEEEccCCCc
Confidence 3445666666666543
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=285.40 Aligned_cols=300 Identities=13% Similarity=0.199 Sum_probs=225.2
Q ss_pred hhhccccccccc-cCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCC---Cc---eeEEeeccCCCeeEEEEcCCCC
Q 013873 51 EKIFARPFIGAL-DGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIAN---RR---TVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 51 ~~~~~~~~~~~l-~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
|+ ..+.++..+ .+|.+.|++++|+| ++ .+|++|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 55 456777788 99999999999999 87 9999999999999999876 33 23333 4999999999999999
Q ss_pred eEEEeeCCCcEEEeeCC---CCCCCCCCCCCCCCCCceeEEE-----ecCceEEEe--eccCCCEEEEeC--CeEEEEeC
Q 013873 123 ILVSCGTDCTVKLWNVP---VATLTDSDDSTDNSSEPLAVYV-----WKNSFWAVD--HQWEGDLFATAG--AQVDIWNH 190 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~--~~i~i~d~ 190 (434)
+|++|+.||.|++||+. .+....... ...+.... ....+.++. +++++.++++++ +.|++||+
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLN-----CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEE-----EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccc-----cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999985 332111000 00111111 223344444 556788888876 67999999
Q ss_pred CCCcceeeeec--CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 191 NRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 191 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
.+++.+..+.. |...|.+++|+|++ .+|++|+.||.|++||++.......+. .
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------~ 254 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWS------------------------F 254 (437)
T ss_dssp TTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEB------------------------C
T ss_pred CCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEe------------------------c
Confidence 99999999988 78999999999997 899999999999999998765544331 1
Q ss_pred CcccCeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeeeeEEecc-------------------------CCccEEE
Q 013873 269 GHESAVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREIYHTK-------------------------RMQRVFC 319 (434)
Q Consensus 269 ~~~~~i~~~~~sp----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v~~ 319 (434)
+|..+|++++|+| ++.+|++|+.||.|++||+.+++....+..+ +...|++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 5777899996665 6789999999999999999999877776532 4466899
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhh--------------------hHHHHHHHHhhccchhhhhh
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK--------------------HAYHEAVKNRYKHLPEIKRI 379 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~v~~~ 379 (434)
++|+ ++++|++|+.||.|++||+.+++.+..+..+.... ............|...|+++
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 9999 78999999999999999999999887765431100 00011112223578889999
Q ss_pred hhccC
Q 013873 380 VRHRH 384 (434)
Q Consensus 380 ~~~~~ 384 (434)
++.+.
T Consensus 414 ~~~~~ 418 (437)
T 3gre_A 414 STCEV 418 (437)
T ss_dssp EEEES
T ss_pred eeecc
Confidence 98887
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.4e-37 Score=281.92 Aligned_cols=308 Identities=13% Similarity=0.128 Sum_probs=242.0
Q ss_pred CCCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC
Q 013873 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (434)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (434)
.+.|..+..........+.+|+.........+.+| ..+....|+|++ .+|++|+.||.|++||+.+++....+.+|..
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence 35555555444444556778888888888888877 555566789998 9999999999999999999998888889999
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEE
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIW 188 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~ 188 (434)
.|++++|+|++++|++|+.||.|++||+.++. .......+...+.+++|+|++.++++++ +.|++|
T Consensus 141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 99999999999999999999999999998763 2333445778899999999999998876 569999
Q ss_pred eCCCCcceeeeec---CCCceEEE---------------------EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEe
Q 013873 189 NHNRSQPINSFQW---GTDTVISV---------------------RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (434)
Q Consensus 189 d~~~~~~~~~~~~---~~~~i~~i---------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 244 (434)
|+.+++.+..+.. +...+.++ +|+|++ .+|++|+.||.|++||+++......+
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-- 285 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQL-- 285 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEE--
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEc--
Confidence 9999998888775 33444444 456777 79999999999999999877654432
Q ss_pred eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee-eeEEeccCCccEEEEEE
Q 013873 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKF 322 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~ 322 (434)
...|...|++++|+|++. +|++|+.||.|++||++++.. ...+..++...|.++.|
T Consensus 286 ----------------------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 286 ----------------------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp ----------------------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred ----------------------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 236888999999999999 999999999999999998754 56666666678888855
Q ss_pred cCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 323 SCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 323 s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
+++++|++++.||.|++|++........+....... ....+...+..++|+|...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT--------FLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE--------EECCSSCCCCEEEEECCSS
T ss_pred -CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc--------EEccCCcceEEEEEccCCC
Confidence 578899999999999999998743322211000000 0125677888899988776
No 54
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=266.99 Aligned_cols=276 Identities=14% Similarity=0.189 Sum_probs=228.8
Q ss_pred hhccccccccccCCCCCeEEEEeCCCC--CceEEeeeCCCcEEEEeCCC-Ccee-EEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 52 KIFARPFIGALDGHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIAN-RRTV-CQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
...+...+..+.+|.+.|++++|+|++ +.+|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 444555677889999999999999993 38999999999999999987 5544 6788999999999999999999999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEee--ccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH--QWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+.||.|++||+.++ .......+...+.++.| ++++.++++++ +.|++||+.+++.+..+..+.
T Consensus 105 ~~dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 105 SCDKTAKMWDLSSN-------------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp ETTSEEEEEETTTT-------------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred cCCCcEEEEEcCCC-------------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 99999999999876 34456677889999999 89998888875 679999999999998888754
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce------------------------EEEeeecCceeEEEeeCCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR------------------------KVIMRANEDCNCYSYDSRK 259 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 259 (434)
.+.++.+.+ ..+++++.++.+.+|+++...... .....+..++.+.+|+.+.
T Consensus 172 -~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 172 -RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp -CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred -CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 567777765 467888999999999997642211 1156677888999999876
Q ss_pred Cc--cceeeeeCccc------------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCC
Q 013873 260 LD--EAKCVHMGHES------------AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 260 ~~--~~~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
.. .....+.+|.. .|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|++++|+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~ 326 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHN 326 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTT
T ss_pred CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCC
Confidence 54 34455566665 7999999999999999999999999999999888777644 488999999999
Q ss_pred CCEEEEeeCCCcEEEeecCc
Q 013873 326 ASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 326 ~~~l~s~~~dg~v~vw~~~~ 345 (434)
+++|++|+.|+..+.|++-.
T Consensus 327 g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 327 GNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEEEEECCCSTTCGGGCC
T ss_pred CCeEEEEecccccccccccC
Confidence 99999999998766666543
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-37 Score=282.82 Aligned_cols=286 Identities=14% Similarity=0.247 Sum_probs=223.8
Q ss_pred CCChhh-hhhhHHHHHHHHhhhh----cccc------ccccccC----------CCCCeEEEEeCCCCCceEEeeeCCCc
Q 013873 32 LRPQEK-AVEYVRALTAAKLEKI----FARP------FIGALDG----------HRDGISCMAKNPNYLKGFFSGSMDGD 90 (434)
Q Consensus 32 ~~~~~~-~~~~~~~~~~~~~~~~----~~~~------~~~~l~~----------h~~~V~~~~~~~~~~~~l~sg~~dg~ 90 (434)
+.|... ..........+.+|++ .+.. ....+.. |.+.|++++|+|++ .+|++|+.||.
T Consensus 53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 131 (425)
T 1r5m_A 53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVENGE 131 (425)
T ss_dssp ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEETTSC
T ss_pred ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeCCCe
Confidence 555555 4444444455667777 4444 2223322 78899999999998 99999999999
Q ss_pred EEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc---eeEEEecCceE
Q 013873 91 IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP---LAVYVWKNSFW 167 (434)
Q Consensus 91 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 167 (434)
|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++............... .........+.
T Consensus 132 i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 132 LRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred EEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence 99999 677888889999999999999999999999999999999999877543332221111000 00011112277
Q ss_pred EEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeee
Q 013873 168 AVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 246 (434)
++.+++++.+++.+. +.|.+||+.+++.+..+..|...|.+++|+|++ .+|++++.||.|++||++.......+
T Consensus 211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~---- 285 (425)
T 1r5m_A 211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCF---- 285 (425)
T ss_dssp CCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEE----
T ss_pred EEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEe----
Confidence 888888876554443 679999999999999999999999999999988 69999999999999999876655433
Q ss_pred cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+..+. ..|.+++|+|++
T Consensus 286 ---------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~ 342 (425)
T 1r5m_A 286 ---------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG-VPIFAGRISQDG 342 (425)
T ss_dssp ---------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT-CCEEEEEECTTS
T ss_pred ---------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC-ccEEEEEEcCCC
Confidence 4688999999999999 99999999999999999998887776544 789999999999
Q ss_pred CEEEEeeCCCcEEEeecCccc
Q 013873 327 SYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 327 ~~l~s~~~dg~v~vw~~~~~~ 347 (434)
++|++++.||.|++|++.+++
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHH
T ss_pred CEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999877
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=281.26 Aligned_cols=271 Identities=16% Similarity=0.295 Sum_probs=204.6
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-----------eeEEeeccC------------CCeeEEEEcCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----------TVCQYSGHQ------------GAVRGLTVSTD 120 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~i~~~~~ 120 (434)
.|.+.|++++|+|+| .+||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 368999999999998 999999999999999998876 477888998 88999999999
Q ss_pred C--CeEEEeeCCCcEEEeeCCCCCCCCCCCC--------------CCCCC------------Cc--eeEEEecCceEEEe
Q 013873 121 G--RILVSCGTDCTVKLWNVPVATLTDSDDS--------------TDNSS------------EP--LAVYVWKNSFWAVD 170 (434)
Q Consensus 121 ~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~------------~~--~~~~~~~~~~~~~~ 170 (434)
+ .+|++++.||+|++||+..+........ ..... .+ .....+...+.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7999999999999999876432100000 00000 00 00123567899999
Q ss_pred eccCCCEEEEeC-CeEEEEeCCC-Cccee-------eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc---
Q 013873 171 HQWEGDLFATAG-AQVDIWNHNR-SQPIN-------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP--- 238 (434)
Q Consensus 171 ~~~~~~~~~~~~-~~i~i~d~~~-~~~~~-------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 238 (434)
|+|++.+++++. +.|++||+.. ++.+. .+..|...|.+++|+|+++.+|++|+.||.|++||++....
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 999999998875 5699999984 33433 35678899999999999878999999999999999998765
Q ss_pred -ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeeeEEeccCC--
Q 013873 239 -ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKRM-- 314 (434)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~-- 314 (434)
...+. ..........+.+|...|.+++|+|+|++|++++. +.|++||++. ++....+..+..
T Consensus 265 ~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 265 HSKLFE-------------EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp TCEEEC-------------CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred eeeEec-------------cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 22221 00000001111234459999999999999999998 9999999987 776666654421
Q ss_pred c------------cEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 315 Q------------RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 315 ~------------~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
. .+..++|+|++++|++|+.||.|++||+.+++.+
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 0 1334999999999999999999999999998765
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-35 Score=267.96 Aligned_cols=251 Identities=12% Similarity=0.125 Sum_probs=198.0
Q ss_pred cccCCCCCeEEEEeCCCC--------CceEEeeeCCCcEEEEeCCCCceeEE----e-----eccCCCeeEEEEcCCCCe
Q 013873 61 ALDGHRDGISCMAKNPNY--------LKGFFSGSMDGDIRLWDIANRRTVCQ----Y-----SGHQGAVRGLTVSTDGRI 123 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~--------~~~l~sg~~dg~i~iwd~~~~~~~~~----~-----~~h~~~v~~i~~~~~~~~ 123 (434)
.|.+|.+.|.+++++++. ...|++|+.|+.+++|++.+...... . ..+...+.+++|+|||++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 578899999999886531 12233345678899999876532211 1 234456899999999999
Q ss_pred EEEe--eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCccee--e
Q 013873 124 LVSC--GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPIN--S 198 (434)
Q Consensus 124 l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~--~ 198 (434)
++++ +.|++|+|||+.++ .......+...+.+++|+|+|.++++++ +.+.+|+..+++.+. .
T Consensus 148 la~as~~~d~~i~iwd~~~~-------------~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDL-------------TEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT 214 (365)
T ss_dssp EEEEESCSSCEEEEEETTTT-------------EEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred EEEEECCCCCEEEEeECCCC-------------cEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence 8654 47899999999876 3444556778899999999999999887 458888888877654 3
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCC----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDR----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
...|...|.+++|+|++ .++++++.|+ .+++|++........ ....+.+|..+|
T Consensus 215 ~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~V 272 (365)
T 4h5i_A 215 DFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVL---------------------RSKQVTNRFKGI 272 (365)
T ss_dssp CCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEE---------------------EEEEEESSCSCE
T ss_pred cCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecce---------------------eeeeecCCCCCe
Confidence 44577889999999998 7888888887 578888765533211 112345789999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 275 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
++++|+|+|++||+|+.|++|+|||+.+++++..+...|...|++++|+|||++|++|+.|++|+||++...
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999999888876677799999999999999999999999999999654
No 58
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-36 Score=276.95 Aligned_cols=246 Identities=21% Similarity=0.314 Sum_probs=213.3
Q ss_pred HHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCC
Q 013873 42 VRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 121 (434)
......+++|++.++.++..+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 126 ~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 126 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred EeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence 3345567899999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeee
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF 199 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~ 199 (434)
.+|++|+.|++|++||+.++.. ......+...+.++.+++++.++++++ +.|++||+.+++....+
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYC------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCE------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 9999999999999999987632 223344567889999999999999886 57999999999999999
Q ss_pred ecCCCceEEEEEcCCC-------------------CcEEEEEecCCcEEEEEccCCCcceE------------------E
Q 013873 200 QWGTDTVISVRFNPAE-------------------PNVLATTASDRSITLYDLRMSSPARK------------------V 242 (434)
Q Consensus 200 ~~~~~~i~~i~~~~~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~ 242 (434)
..|...|.+++|+|++ +.+|++|+.||.|++||++++..... +
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSC
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCE
Confidence 9999999999999963 36899999999999999987654332 2
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
++.++.++.+.+||.... .....+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 353 l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 445778899999998654 4455677999999999999999999999999999999863
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.8e-36 Score=270.86 Aligned_cols=267 Identities=11% Similarity=0.113 Sum_probs=220.1
Q ss_pred HHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE--eeccCCCeeEEEEcCC
Q 013873 45 LTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTD 120 (434)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~ 120 (434)
...+.+|+..... .+..+.+|...|++++|+|++ .+|++|+.||.|++||+.+++.... +..|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 4456677776665 788899999999999999998 9999999999999999988875444 4679999999999999
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE--EEecCceEEEeeccCCCEEEEeC--CeEEEEeC------
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV--YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH------ 190 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~------ 190 (434)
+++|++++.||.|++||+...... ..... ..+...+.+++++|++.++++++ +.+++||+
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 177 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDW----------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTE----------EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred CCEEEEEeCCCEEEEEEecCCCcc----------eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccc
Confidence 999999999999999999766310 01111 12356899999999999998876 67999995
Q ss_pred ------------CCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC
Q 013873 191 ------------NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR 258 (434)
Q Consensus 191 ------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
..++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++......+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~---------------- 240 (372)
T 1k8k_C 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATL---------------- 240 (372)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEE----------------
T ss_pred ccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEE----------------
Confidence 4677888888899999999999988 79999999999999999877655433
Q ss_pred CCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--Ceee------------------------------
Q 013873 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG--GRSR------------------------------ 306 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~~------------------------------ 306 (434)
..|..+|.+++|+|++.+|++| .|+.|++||+.. +...
T Consensus 241 ---------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 241 ---------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp ---------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred ---------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 4788899999999999988887 899999999987 4210
Q ss_pred --------eEEeccCCccEEEEEEc-CCC---CEEEEeeCCCcEEEeecCccccc
Q 013873 307 --------EIYHTKRMQRVFCVKFS-CDA---SYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 307 --------~~~~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
..+...|...|++++|+ ++| .+|++|+.||.|++|++.+++.+
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 12223566899999976 576 99999999999999999886654
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.8e-35 Score=303.04 Aligned_cols=274 Identities=19% Similarity=0.299 Sum_probs=237.3
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
...+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34568999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc--CCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
.++.. ......+...+.++.|++ ++.++++++ +.|.+||+.+++.+..+.+|...|.+++|+|+
T Consensus 687 ~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 687 ATGKL------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TTCCE------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred CCCce------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence 87732 233345677899999999 555777765 56999999999999999999999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEE------------------------------eeecCceeEEEeeCCCCccce
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVI------------------------------MRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 264 (434)
+ .+|++++.||.|++||++.......+. +....++.+.+|+........
T Consensus 755 ~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 755 D-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp T-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred C-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 8 799999999999999998764433221 112235678888888777666
Q ss_pred eeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 265 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 265 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
....+|...|.+++|+|+++++++++.||.|++||+.++.....+..+ ...|++++|+|++++|++++.||.|++|++.
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 666789999999999999999999999999999999999887777554 4889999999999999999999999999987
Q ss_pred ccc
Q 013873 345 ASE 347 (434)
Q Consensus 345 ~~~ 347 (434)
+..
T Consensus 913 ~~~ 915 (1249)
T 3sfz_A 913 KVC 915 (1249)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.3e-35 Score=274.46 Aligned_cols=289 Identities=18% Similarity=0.276 Sum_probs=233.1
Q ss_pred HHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc--CC
Q 013873 43 RALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS--TD 120 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~--~~ 120 (434)
.....+++|++.+...+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+ ++
T Consensus 139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSS
T ss_pred cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCC
Confidence 344567888888889999999999999999999985 89999999999999999999999999999999999998 57
Q ss_pred CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCC-----------CceeEEEecCceEEEeeccCCCEEEEeC--CeEEE
Q 013873 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS-----------EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
+.+|++|+.||.|++||+.+.............. .......+...+.++ ++++.++++++ +.|++
T Consensus 217 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEE
T ss_pred CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEE
Confidence 7899999999999999998775432221110000 011112233344444 67788888775 67999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
||+.+++.+..+..|...|.+++|+|++ ..+++|+.||.|++||++++..... +
T Consensus 295 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~-------------------------~ 348 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYT-------------------------L 348 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEE-------------------------E
T ss_pred EECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEE-------------------------E
Confidence 9999999999999999999999999988 7899999999999999987755443 3
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.+|...|.+++|+ +++|++|+.||.|++||+.++....... +...+..++|++++.+|++|+ ||.|++||+.+++
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4799999999997 5899999999999999999887655543 335678899999999999998 8999999999999
Q ss_pred ccccCChhhhhhhHHHHHHHHhhccchhhhhhhhc
Q 013873 348 QLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH 382 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 382 (434)
.+..+.. .+...|..++|+
T Consensus 424 ~~~~~~~----------------~~~~~v~~v~~~ 442 (464)
T 3v7d_B 424 LVHANIL----------------KDADQIWSVNFK 442 (464)
T ss_dssp EEESCTT----------------TTCSEEEEEEEE
T ss_pred EEehhhc----------------cCCCcEEEEEec
Confidence 8865322 345567777775
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-35 Score=265.55 Aligned_cols=252 Identities=11% Similarity=0.160 Sum_probs=211.9
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKL 135 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~i 135 (434)
....+|.+.|++++|+|++ .+|++|+.||.|++||+.++. ....+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3457899999999999998 999999999999999998877 3445568999999999999999 9999999999999
Q ss_pred eeC-CCCCCCCCCCCCCCCCCceeEEE--ecCceEEEeeccCCCEEEEeC--CeEEEEeCCC---------Ccceeeeec
Q 013873 136 WNV-PVATLTDSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR---------SQPINSFQW 201 (434)
Q Consensus 136 wd~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~---------~~~~~~~~~ 201 (434)
||+ .++.. ..... +...+.+++++| +..+++++ +.|++||+.+ ++++..+.
T Consensus 84 wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 84 VDLIGSPSF-------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp ECSSSSSSE-------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEeccCCce-------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 999 76532 22233 667899999999 88888776 5699999987 77777776
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC-CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
+...+.+++|+|++ +++++.||.|++||++. ....... ....|...+.+++|+
T Consensus 149 ~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~-----------------------~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTI-----------------------EESGLKYQIRDVALL 202 (342)
T ss_dssp SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEE-----------------------EECSCSSCEEEEEEC
T ss_pred eCCceEEEEecCCc---EEEEeCCCeEEEEECCcccccccee-----------------------eecCCCCceeEEEEC
Confidence 78899999999865 88999999999999987 4432211 223678899999999
Q ss_pred c-CCCEEEEEeCCCcEEEEeCCCC------eeeeEEeccC--------CccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 281 P-TGREFVTGSYDRTIRIFQYNGG------RSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 281 p-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
| ++++|++++.||.|++|+++.. .....+..+. ...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 9 9999999999999999999876 5555554442 23899999999999999999999999999999
Q ss_pred ccccccCC
Q 013873 346 SEQLGVLH 353 (434)
Q Consensus 346 ~~~~~~~~ 353 (434)
++.+..+.
T Consensus 283 ~~~~~~~~ 290 (342)
T 1yfq_A 283 RKKIKNFA 290 (342)
T ss_dssp TEEEEECC
T ss_pred HhHhhhhh
Confidence 98887764
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.8e-37 Score=277.64 Aligned_cols=261 Identities=13% Similarity=0.173 Sum_probs=199.4
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC--ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
+..|.+.|++++|+|++ .+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34567899999999998 99999999999999999988 7788889999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc---ceeeeec-CCCceEEEEEcC
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ---PINSFQW-GTDTVISVRFNP 213 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~---~~~~~~~-~~~~i~~i~~~~ 213 (434)
++... ........+...+.+++|+|++.++++++ +.|++||+..++ ....+.. |...|.+++|+|
T Consensus 86 ~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 86 PDGTW---------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ---CC---------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CCCce---------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 76410 12233344677899999999999888876 569999999887 3677777 899999999999
Q ss_pred CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCC-CCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 214 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
++ .+|++++.||.|++||++........... .+..+ ........+ +|...|++++|+|+|++|++++.|
T Consensus 157 ~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 157 NN-VLLAAGCADRKAYVLSAYVRDVDAKPEAS--------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp TS-SEEEEEESSSCEEEEEECCSSCC-CCCSC--------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred CC-CEEEEEeCCCEEEEEEEEecccCCCcccc--------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 88 79999999999999999754322110000 00000 011222233 799999999999999999999999
Q ss_pred CcEEEEeCCCCee----eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 293 RTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 293 ~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
|.|++||+.++.. ...+.. |...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CcEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999998876 444444 44789999999999999998866655 66665
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-35 Score=271.97 Aligned_cols=282 Identities=13% Similarity=0.180 Sum_probs=224.4
Q ss_pred hhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEE
Q 013873 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 117 (434)
..........+++|++.....+..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 33333344567788888888888889999999999999998 89999999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe------------cCceEEEeeccCCCEEEEeC--C
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW------------KNSFWAVDHQWEGDLFATAG--A 183 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~ 183 (434)
+|++++|++++.||.|++||+.++.....+.........+..... ...+.+++|+|++.++++++ +
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 999999999999999999999887655444332222222222211 35667778899999998876 5
Q ss_pred eEEEEeCCCCcceeeeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc-ceEEEeeecCceeEEEeeCCCCc
Q 013873 184 QVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP-ARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
.|++||+.+++.+..+.. |...|.+++|+|++..+|++|+.||.|++||+++... ...+
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~------------------- 330 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF------------------- 330 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-------------------
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-------------------
Confidence 699999999987776654 7789999999999955999999999999999987643 2222
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee--------eEEeccCCccEEEEEEcCCCC---EEE
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR--------EIYHTKRMQRVFCVKFSCDAS---YVI 330 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~---~l~ 330 (434)
...|...|.++.+ |++++|++++.|+.|++||+...... ......+...|.+++|+|++. .|+
T Consensus 331 -----~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 331 -----LINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp -----EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred -----hccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 1236778888855 57889999999999999998763211 112234447899999999999 777
Q ss_pred EeeCCCcEEEeecCc
Q 013873 331 SGSDDTNLRLWKAKA 345 (434)
Q Consensus 331 s~~~dg~v~vw~~~~ 345 (434)
+.+.+|.+.+|++..
T Consensus 405 a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 405 EVGKNNFCALYNLSN 419 (420)
T ss_dssp EEETTTEEEEEESCC
T ss_pred EEcCCceEEEEeccC
Confidence 778899999999864
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.3e-36 Score=267.99 Aligned_cols=289 Identities=13% Similarity=0.177 Sum_probs=200.6
Q ss_pred EEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC------CCcEEEeeCCCCCCC
Q 013873 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVATLT 144 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~ 144 (434)
.+.+.++ ++++.++.+.....|++.... ...|...|++++|+|||++|++|+. |+.|++|+..++...
T Consensus 10 g~d~g~~--~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 10 GVDLGTE--NLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred CCCCCcc--ceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 3444555 344555556778999876443 3469999999999999999999997 778999998766432
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCccee----eeecCCCceEEEEEcCCCCcEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPIN----SFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~l 219 (434)
. ........+...+.+++|+|++.+++++. +.|++||+.+++... ...+|...|.+++|+|++ .+|
T Consensus 84 ~--------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l 154 (357)
T 4g56_B 84 E--------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQA 154 (357)
T ss_dssp G--------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEE
T ss_pred e--------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEE
Confidence 1 12334556778899999999998877665 679999998876543 234688999999999998 799
Q ss_pred EEEecCCcEEEEEccCCCcceE-------------------EEeeecCceeEEEeeCCCCcccee-eeeCcccCeEEEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARK-------------------VIMRANEDCNCYSYDSRKLDEAKC-VHMGHESAVMDIDY 279 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 279 (434)
++|+.||.|++||++++..... +...+..++.+.+||.+....... ....|...+++++|
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 9999999999999987654332 233466788899999876554333 23457788999999
Q ss_pred ccC-CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC-CEEEEeeCCCcEEEeecCcccccccCChhhh
Q 013873 280 SPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLGVLHPREQ 357 (434)
Q Consensus 280 sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 357 (434)
+|+ +.+|++|+.|+.|++||+++++....+..+ ...|++++|+|++ ++|++|+.||.|+|||+.+++.+..+
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----- 308 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----- 308 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----
Confidence 997 568999999999999999999888777554 4789999999987 68999999999999999998876543
Q ss_pred hhhHHHHHHHHhhccchhhhhhhhccCCChHHHHHH
Q 013873 358 RKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 393 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 393 (434)
+|...|++++|+|..+..+.+.+
T Consensus 309 -------------~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 309 -------------SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp -------------CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -------------CCCCCEEEEEEeCCCCCEEEEEc
Confidence 68888999999997776555444
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.1e-35 Score=269.46 Aligned_cols=257 Identities=18% Similarity=0.282 Sum_probs=210.9
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC----------CceeEEeeccCCCeeEEEEcCCCC-eEEEee
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----------RRTVCQYSGHQGAVRGLTVSTDGR-ILVSCG 128 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~ 128 (434)
..+.+|.+.|++++|+|+++.+|++|+.||.|++||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456789999999999998448999999999999999986 577788899999999999999988 999999
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCC---cceeeeecC
Q 013873 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRS---QPINSFQWG 202 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~---~~~~~~~~~ 202 (434)
.||.|++|++..+....... ........+...+.+++|+| ++.++++++ +.|++||++++ +.+..+..|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEE-----ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred CCCeEEEEeCCCCCCCCcee-----ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 99999999998743210000 00122334667899999999 677777764 67999999987 577788889
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
...|.+++|+|++..+|++|+.||.|++||++... +.. .+..|...|++++|+|
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-------------------------~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-------------------------SFESHKDEIFQVQWSP 331 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-------------------------EEECCSSCEEEEEECS
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-------------------------EeecCCCCEEEEEECC
Confidence 99999999999997799999999999999998743 222 3347899999999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCC--------------eeeeEEeccCCccEEEEEEcCCCC-EEEEeeCCCcEEEeecCc
Q 013873 282 TGR-EFVTGSYDRTIRIFQYNGG--------------RSREIYHTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 282 ~~~-~l~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~ 345 (434)
+++ +|++++.|+.|++||+... ..+.. ...|...|++++|+|++. +|++++.||.|+||++..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE-CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE-cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 985 6999999999999999862 23333 334557899999999999 899999999999999976
Q ss_pred cc
Q 013873 346 SE 347 (434)
Q Consensus 346 ~~ 347 (434)
..
T Consensus 411 ~~ 412 (430)
T 2xyi_A 411 NV 412 (430)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=292.06 Aligned_cols=259 Identities=20% Similarity=0.270 Sum_probs=210.0
Q ss_pred cccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--CCceeEEeeccCCCeeEEEEcCC--CCeEEEeeCCCcEE
Q 013873 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCTVK 134 (434)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~dg~v~ 134 (434)
+..+.+|.+.|++++|+|++ .+|++|+.||+|+|||+. ++.....+.+|.++|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 45689999999999999998 899999999999999998 55677888999999999999987 99999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC--CCEEEEeC--CeEEEEeCCCCc--ceeeeecCCCceEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQ--PINSFQWGTDTVIS 208 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~ 208 (434)
+||+.++.. ........+...+.+++++|+ +..+++++ +.|++||+..+. ....+..|...|.+
T Consensus 81 vwd~~~~~~----------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 81 IWKEENGRW----------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEEETTEE----------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred EEECCCCcc----------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 999976531 022233346678999999999 88888876 679999998873 44566778999999
Q ss_pred EEEcCC------------CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 209 VRFNPA------------EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 209 i~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
++|+|. ++.+|++|+.||.|++||++........ ...+.+|...|++
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~---------------------~~~~~~h~~~V~~ 209 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------------------ESTLEGHSDWVRD 209 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE---------------------EEEECCCSSCEEE
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee---------------------eeeecCCCCcEEE
Confidence 999995 2378999999999999999876543322 1234589999999
Q ss_pred EEEccC---CCEEEEEeCCCcEEEEeCCCCeeee----EEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 277 IDYSPT---GREFVTGSYDRTIRIFQYNGGRSRE----IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 277 ~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
++|+|+ +++|++|+.||.|++||+.++.... .....+...|++++|+|+|++|++|+.||.|++|++..+...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 999999 8999999999999999998864211 112234578999999999999999999999999999865443
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=278.87 Aligned_cols=265 Identities=11% Similarity=0.049 Sum_probs=206.6
Q ss_pred HHHHHHHhhhhcccccc----ccccCCCCCeEEEEeCCCC-----CceEEeeeCCCcEEEEeCCCCce-----------e
Q 013873 43 RALTAAKLEKIFARPFI----GALDGHRDGISCMAKNPNY-----LKGFFSGSMDGDIRLWDIANRRT-----------V 102 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~-----------~ 102 (434)
.....+++|++.+.... ..+.+|.+.|.+++|+|++ ..+||+|+.||+|+|||+.++.. .
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 34445678887665532 3467889999999999971 27999999999999999986642 2
Q ss_pred EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE--eeccCC-CEEE
Q 013873 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV--DHQWEG-DLFA 179 (434)
Q Consensus 103 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 179 (434)
..+.+|...|++++|++++ .|++|+.||+|++||+.++.. .......+...|.++ .+++++ .+++
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-----------~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-----------PSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-----------CSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-----------ceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 4678899999999999864 899999999999999976521 122344567789998 578887 8888
Q ss_pred EeC--CeEEEEeCCCCcceeeeecCCC--ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 180 TAG--AQVDIWNHNRSQPINSFQWGTD--TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 180 ~~~--~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
+++ +.|++||+++++.+..+.+|.. .|.+++|+|++ ..|++++.|++|++||++.......+
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l------------- 393 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPL------------- 393 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEE-------------
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceee-------------
Confidence 876 6799999999888777766643 57899999988 67899999999999999887654433
Q ss_pred eCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--------------eeeEE------------
Q 013873 256 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR--------------SREIY------------ 309 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~------------ 309 (434)
.+|.+.|++++|+|+|++|++|+.||+|++||+..+. .+..+
T Consensus 394 ------------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~ 461 (524)
T 2j04_B 394 ------------VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRID 461 (524)
T ss_dssp ------------EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred ------------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence 4799999999999999999999999999999853210 00000
Q ss_pred -----------------eccCCccEEEEEEcCCCC---EEEEeeCCCcEEEeecCc
Q 013873 310 -----------------HTKRMQRVFCVKFSCDAS---YVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 310 -----------------~~~~~~~v~~~~~s~~~~---~l~s~~~dg~v~vw~~~~ 345 (434)
...|...|.+|+|+|++. ++++|+.||.|+||++.-
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 112346789999999954 999999999999999864
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-35 Score=283.32 Aligned_cols=313 Identities=11% Similarity=0.137 Sum_probs=241.7
Q ss_pred HHHHHHhhhhccccccccccCCCC---CeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCCceeEEe-e---ccCCCeeEE
Q 013873 44 ALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQY-S---GHQGAVRGL 115 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~---~h~~~v~~i 115 (434)
....+++|+..+...+..+.+|.. .|++++|+|+ + .+|++|+.||.|++||+.+++.+..+ . .|...|.++
T Consensus 181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~ 259 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259 (615)
T ss_dssp TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence 345567888888888899999999 9999999999 8 99999999999999999999999988 6 899999999
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS 193 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~ 193 (434)
+|+ ++.+|++++.||.|++||+.++.......... ......+.++.+. ++..+++++ +.+++||+.++
T Consensus 260 ~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 260 SWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK--------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp EES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT--------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred EEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 999 99999999999999999998764322111110 0012345556664 666666654 56888888877
Q ss_pred cceeeeecCCCceEEEEEcCC---------------------------------CCcEEEEEecCCcEEEEEccCCCc--
Q 013873 194 QPINSFQWGTDTVISVRFNPA---------------------------------EPNVLATTASDRSITLYDLRMSSP-- 238 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~-- 238 (434)
+.+..+..|...|.+++| |+ + ..|++++.||.|++||+.....
T Consensus 330 ~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSS
T ss_pred cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC-cEEEEEeCCCCEEEEEcccCcccC
Confidence 777777666666655555 43 3 4667777777777777654221
Q ss_pred --------------------------------c---------------eEEEeeecC-ceeEEEeeCCCCccceeeeeCc
Q 013873 239 --------------------------------A---------------RKVIMRANE-DCNCYSYDSRKLDEAKCVHMGH 270 (434)
Q Consensus 239 --------------------------------~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (434)
. ......+.. ++.+.+|+..........+.+|
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 487 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL 487 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCc
Confidence 0 112333444 7788888876543222455689
Q ss_pred ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC----------CCCEEEEeeCCCcEEE
Q 013873 271 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC----------DASYVISGSDDTNLRL 340 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~~~dg~v~v 340 (434)
...|++++|+|+|++|++++.||.|++||+.+++....+...|...|++++|+| ++++|++|+.||.|++
T Consensus 488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence 999999999999999999999999999999999988777653668999999999 9999999999999999
Q ss_pred eecCcc-cccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 341 WKAKAS-EQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 341 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
|++.++ +.+..+. .|...|.+++|+|...
T Consensus 568 w~~~~~~~~~~~~~-----------------~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 568 YSVKRPMKIIKALN-----------------AHKDGVNNLLWETPST 597 (615)
T ss_dssp EESSCTTCCEEETT-----------------SSTTCEEEEEEEETTE
T ss_pred EECCCCceechhhh-----------------cCccceEEEEEcCCCC
Confidence 999987 5555442 5778899999998876
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-36 Score=274.10 Aligned_cols=278 Identities=12% Similarity=0.080 Sum_probs=207.2
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccc--cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEee
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYS 106 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~ 106 (434)
+.|.............+++|++.+. ..+..+.+|.+.|++++|+|++ .+|++|+.||+|++||+.++. ....+.
T Consensus 19 ~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 19 FNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp ECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CCCCEEECC
T ss_pred ECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence 4444444444444556778888777 7888999999999999999998 999999999999999999877 667778
Q ss_pred ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCceEEEeeccCCCEEEEeC--C
Q 013873 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG--A 183 (434)
Q Consensus 107 ~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~ 183 (434)
+|...|.+++|+|++++|++++.||.|++||+..+.... ....... +...+.+++++|++.++++++ +
T Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW---------VSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC---------CCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce---------eeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 899999999999999999999999999999998764210 1112222 577899999999999998876 5
Q ss_pred eEEEEeCC------------------CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee
Q 013873 184 QVDIWNHN------------------RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (434)
Q Consensus 184 ~i~i~d~~------------------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 245 (434)
.|++||+. .++.+..+ .|...|.+++|+|++ .+|++++.||.|++||+++.......
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--- 243 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRA--- 243 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEE---
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCccee---
Confidence 69999985 24455666 888999999999998 78999999999999999887652111
Q ss_pred ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--------------------
Q 013873 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-------------------- 305 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-------------------- 305 (434)
...+.+|...|.+++|+|+|++|++|+.|+.+ +|+......
T Consensus 244 ------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T 3dwl_C 244 ------------------LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGN 304 (377)
T ss_dssp ------------------CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred ------------------eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccc
Confidence 12335799999999999999999999866655 666542110
Q ss_pred -------e---------eEE---------------eccCCccEEEEEEcCC-CC---EEEEeeCCCcEEEeec
Q 013873 306 -------R---------EIY---------------HTKRMQRVFCVKFSCD-AS---YVISGSDDTNLRLWKA 343 (434)
Q Consensus 306 -------~---------~~~---------------~~~~~~~v~~~~~s~~-~~---~l~s~~~dg~v~vw~~ 343 (434)
. ..+ ...|...|+++++.+. +. .|++|+.||.|++||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 000 1125678999997664 33 6999999999999985
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=275.63 Aligned_cols=283 Identities=13% Similarity=0.188 Sum_probs=221.3
Q ss_pred CChhhhhhhHHHHHHHHhhhhcc----ccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc------ee
Q 013873 33 RPQEKAVEYVRALTAAKLEKIFA----RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TV 102 (434)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------~~ 102 (434)
.|.............+++|++.. ...+..+.+|...|++++|+|++..+|++|+.||.|++||+.+++ ..
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 34333333333345677888766 457888999999999999999833999999999999999999876 33
Q ss_pred EE---eeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CE
Q 013873 103 CQ---YSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DL 177 (434)
Q Consensus 103 ~~---~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 177 (434)
.. +..|...|.+++|+|+ +.+|++++.||.|++||+.++............ ..+...+.+++|+|++ .+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------SGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------SCCCCCEEEEEECSSCTTE
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------cccCCceEEEEECCCCCCE
Confidence 33 3679999999999998 789999999999999999876432111110000 0015679999999997 56
Q ss_pred EEEeC--C---eEEEEeCCCC-cceeeee-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCce
Q 013873 178 FATAG--A---QVDIWNHNRS-QPINSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDC 250 (434)
Q Consensus 178 ~~~~~--~---~i~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 250 (434)
+++++ + .|++||++++ .++..+. .|...|.+++|+|.++.+|++++.||.|++||+++......+
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-------- 301 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-------- 301 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--------
T ss_pred EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--------
Confidence 66654 4 8999999986 6777787 899999999999944489999999999999999877654433
Q ss_pred eEEEeeCCCCccceeeeeCcccCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeeeEEec------------------
Q 013873 251 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHT------------------ 311 (434)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------ 311 (434)
.+|...|++++|+|++ .+|++++.|+.|++||+.+.........
T Consensus 302 -----------------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 302 -----------------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp -----------------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------------------
T ss_pred -----------------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 4789999999999999 8999999999999999987653221100
Q ss_pred ----------------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 312 ----------------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 312 ----------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
.+..++.+++|+|+|++|++|+.||.|+||++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 03456779999999999999999999999999764
No 72
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-35 Score=267.93 Aligned_cols=270 Identities=11% Similarity=0.170 Sum_probs=225.9
Q ss_pred CChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC-
Q 013873 33 RPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA- 111 (434)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~- 111 (434)
.|.............+.+|+ .....+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+..+...
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 33333333333344566777 5667788899999999999999998 89999999999999999999999988887777
Q ss_pred --------------eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCE
Q 013873 112 --------------VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL 177 (434)
Q Consensus 112 --------------v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (434)
+.+++|++++ .+++++.||.|++||+.++.. ......+...+.+++++|++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP------------TGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC------------SEEECCCSSCEEEEEEETTTTE
T ss_pred cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce------------eeeeccCCCceEEEEECCCCCE
Confidence 9999999985 688899999999999987632 2223345678999999999999
Q ss_pred EEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 178 FATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 178 ~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
+++++ +.|++||+.+++.+..+..|...|.+++|+|++ ++++++.||.|++||+++......+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~------------- 326 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALS------------- 326 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEE-------------
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEec-------------
Confidence 88876 679999999999999999999999999999987 8899999999999999876544332
Q ss_pred eCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--------------------eeeEEeccCCc
Q 013873 256 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR--------------------SREIYHTKRMQ 315 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~ 315 (434)
..|...|.+++|+|++++|++++.||.|++||+.++. ....+..+...
T Consensus 327 ------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 327 ------------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp ------------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred ------------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 4688899999999999999999999999999998877 66666555433
Q ss_pred -cEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 316 -RVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 316 -~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.|++++|+|++++|++++.||.|++|++.
T Consensus 395 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 395 DYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CceEEEEccCCCceEEEEecCceEEEEeec
Confidence 89999999999999999999999999985
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-34 Score=261.79 Aligned_cols=278 Identities=19% Similarity=0.184 Sum_probs=213.0
Q ss_pred hHHHHHHHHhhhhcccccccccc--CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec---cCCCeeEE
Q 013873 41 YVRALTAAKLEKIFARPFIGALD--GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG---HQGAVRGL 115 (434)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~i 115 (434)
.......+++|++........+. +|...|.+++|+|++..+|++|+.||.|++||+.+ .....+.. |...|.++
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~ 169 (383)
T 3ei3_B 91 VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCV 169 (383)
T ss_dssp EEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEE
T ss_pred EEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEE
Confidence 33344567788887666665554 79999999999994338999999999999999986 55555544 44889999
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCC
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNR 192 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~ 192 (434)
+|+|++.+|++|+.||.|++||+... .......+...+.+++|+|++. ++++++ +.|++||+.+
T Consensus 170 ~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 170 DVSVSRQMLATGDSTGRLLLLGLDGH-------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTSC-------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred EECCCCCEEEEECCCCCEEEEECCCC-------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999999999999999999998421 2333445677899999999998 777775 5799999987
Q ss_pred ----CcceeeeecCCCceEEEEEcC-CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 193 ----SQPINSFQWGTDTVISVRFNP-AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 193 ----~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
+..+..+ .|...|.+++|+| ++ .+|++++.||.|++||+++......+........ ....... ..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~ 306 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF-------QHLTPIK-AT 306 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC-------TTSCCCC-CE
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcccccccccccccc-------ccccceE-Ee
Confidence 5555555 6889999999999 77 7999999999999999998877665532111000 0000000 01
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
-.....+..++|+|+|++ +|+.|+.|++||+.+++.+..+..+ +...+.+++|+|++++|++|+ ||.|++||+++
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 112345667888888887 8889999999999999988887654 346677889999999999997 99999999874
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-33 Score=259.81 Aligned_cols=308 Identities=20% Similarity=0.323 Sum_probs=243.0
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCCCe-EEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEc
Q 013873 40 EYVRALTAAKLEKIFARPFIGALDGHRDGI-SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118 (434)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V-~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 118 (434)
.|.+.......|..........+.+|.+.| .|+.+ ++ .+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+
T Consensus 92 ~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 92 AYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 168 (445)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE
T ss_pred HHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec
Confidence 344444445566655555667889999875 55555 56 899999999999999999999999999999999999997
Q ss_pred CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcce
Q 013873 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPI 196 (434)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~ 196 (434)
+.+|++|+.||+|++||+.++... .....+...+.++.+++ ..++++ ++.|++||+.+++.+
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECI------------HTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEE------------EEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEE
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEE------------EEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEE
Confidence 569999999999999999876432 22234566788888864 445555 477999999999999
Q ss_pred eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE----------------EeeecCceeEEEeeCCCC
Q 013873 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV----------------IMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 197 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 260 (434)
..+..|...+.+++| ++ .++++|+.||.|++||+++......+ .+.+..++.+.+||.+..
T Consensus 233 ~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 233 HVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999 34 67999999999999999876544332 344677889999998764
Q ss_pred ccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEec--cCCccEEEEEEcCCCCEEEEeeCCCcE
Q 013873 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISGSDDTNL 338 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v 338 (434)
. ....+.+|...+.++.+ ++++|++|+.||.|++||+.+++....+.. .+...|++++|+ +++|++|+.||.|
T Consensus 310 ~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 310 N-CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp C-EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred C-EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence 3 44556789999998887 567999999999999999999988877754 255789999995 6799999999999
Q ss_pred EEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 339 RLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 339 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
++||+.+++.+..+..... ..+...|..++|+|...
T Consensus 385 ~iwd~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 385 KLWDLKTGEFIRNLVTLES------------GGSGGVVWRIRASNTKL 420 (445)
T ss_dssp EEEETTTCCEEEEEEECTT------------GGGTCEEEEEEECSSEE
T ss_pred EEEECCCCceeeeeecccc------------CCCCceEEEEEecCCEE
Confidence 9999999988876632110 14566788888887643
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=248.93 Aligned_cols=261 Identities=21% Similarity=0.313 Sum_probs=218.2
Q ss_pred HHHHHhhhhccccccccc--cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCC
Q 013873 45 LTAAKLEKIFARPFIGAL--DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 122 (434)
.+.+++|++.++..+..+ .+|...|++++|+|++ ++|++|+.||+|++||+.+++.+..+.+|...+.++.+ ++.
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~ 120 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY 120 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC
Confidence 456889999888877765 5788899999999999 99999999999999999999999999999998877655 567
Q ss_pred eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcc----e
Q 013873 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP----I 196 (434)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~----~ 196 (434)
.+++++.++.+++|+...... .......+...+..+.+.+++.++++++ +.|++||+.+++. .
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEH-----------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred EEEEEecCCceEeeecCCCce-----------eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence 999999999999999876531 2233445667889999999999998876 5699999988653 3
Q ss_pred eeeecCCCceEEEEEcCCCCcEEE--EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe
Q 013873 197 NSFQWGTDTVISVRFNPAEPNVLA--TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV 274 (434)
Q Consensus 197 ~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 274 (434)
.....+...|.++.++|.+..++. +++.++.|++||.+........ .+...+
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------------------------~~~~~v 243 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------------------------DAHSQV 243 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--------------------------ECSSCE
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--------------------------cceeee
Confidence 444557788999999998877654 5667899999998876544332 467789
Q ss_pred EEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 275 MDIDYSPTGREFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 275 ~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
..+.|+|+++.+++++ .|+.|++||+.+++++..+..| .+.|++++|+|++++|++|+.||.|+|||+...
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999887765 7999999999999998888654 489999999999999999999999999998754
No 76
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.5e-34 Score=253.34 Aligned_cols=289 Identities=15% Similarity=0.181 Sum_probs=233.1
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
|.+.|.+++|+|+| .+++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++...
T Consensus 8 ~~~~v~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADG-QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSS-CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCC-CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 56789999999999 8898888888887887666555555567999999999999999999998 999999999876432
Q ss_pred CCCCCCCCCCCceeEE---EecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCc--ceeeeecCCCceEEEEEcCCCCc
Q 013873 145 DSDDSTDNSSEPLAVY---VWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
...... .+...+.+++++|++.++++++ +.|.+||+.+++ ....+..|...+.+++|+|++ .
T Consensus 86 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 154 (337)
T 1gxr_A 86 ----------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-K 154 (337)
T ss_dssp ----------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-S
T ss_pred ----------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-C
Confidence 112211 3567899999999999888875 679999999887 566777888999999999987 7
Q ss_pred EEEEEecCCcEEEEEccCCCcceE------------------EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARK------------------VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
+|++++.||.|++||+++...... ....+..++.+++||.+....... ..+...+.+++|
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~v~~~~~ 232 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGY 232 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee--ecCCCceEEEEE
Confidence 899999999999999987643332 234466788899999876543332 257788999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhh
Q 013873 280 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 359 (434)
Q Consensus 280 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 359 (434)
+|++++|++++.|+.|++||+.++.... + ..+...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------- 303 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------- 303 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-------
Confidence 9999999999999999999999887543 3 344578999999999999999999999999999988766322
Q ss_pred hHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 360 HAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
.|...+..++|+|....+
T Consensus 304 -----------~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 304 -----------KESSSVLSCDISVDDKYI 321 (337)
T ss_dssp -----------ECSSCEEEEEECTTSCEE
T ss_pred -----------cCCCcEEEEEECCCCCEE
Confidence 456678888888876543
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.5e-33 Score=258.52 Aligned_cols=278 Identities=18% Similarity=0.273 Sum_probs=232.9
Q ss_pred HHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCe
Q 013873 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 123 (434)
....+++|+..+...+..+.+|.+.|.+++|+ + .+|++|+.||+|++||+.+++.+..+.+|...|.++.|+ +..
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~ 211 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR 211 (445)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE
Confidence 34456788888888999999999999999998 3 789999999999999999999999999999999999995 568
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeec
Q 013873 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW 201 (434)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~ 201 (434)
|++|+.||.|++||+.++.. ......+...+.++.+ ++..+++++ +.|++||+.+++.+..+..
T Consensus 212 l~s~s~dg~i~~wd~~~~~~------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQC------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp EEEEETTSEEEEEESSSCCE------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCcE------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 99999999999999987632 2233345667888888 566666664 6799999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEE----------------EeeecCceeEEEeeCCCCcccee
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV----------------IMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
|...|.+++| ++ ..+++|+.||.|++||+++......+ .+.+..++.+.+||.+.... ..
T Consensus 278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~ 353 (445)
T 2ovr_B 278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-LQ 353 (445)
T ss_dssp CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-EE
T ss_pred CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-EE
Confidence 9999999999 34 78999999999999999887654432 44577889999999876443 33
Q ss_pred eeeC---cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEe----ccCCccEEEEEEcCCCCEEEEeeCCCc-
Q 013873 266 VHMG---HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH----TKRMQRVFCVKFSCDASYVISGSDDTN- 337 (434)
Q Consensus 266 ~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~- 337 (434)
.+.+ |...|++++|+ +++|++|+.||.|++||+.+++....+. ..+.+.|++++|+|++.++++|+.||.
T Consensus 354 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 354 TLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred EEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 3443 88999999995 5899999999999999999998877762 344578999999999999999999998
Q ss_pred ---EEEeecCcc
Q 013873 338 ---LRLWKAKAS 346 (434)
Q Consensus 338 ---v~vw~~~~~ 346 (434)
|.|||+...
T Consensus 432 ~~~l~v~df~~~ 443 (445)
T 2ovr_B 432 ETKLLVLDFDVD 443 (445)
T ss_dssp CCEEEEEECCCC
T ss_pred ccEEEEEECCCC
Confidence 999999753
No 78
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.4e-33 Score=250.87 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=190.3
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEee
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCG 128 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~ 128 (434)
++++.+.+.+..+.+|.+.|++++|+|+| .+|++|+.+| ++|||+.+++....... ..+..+++.++++.+ ++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEEC
Confidence 34455566677889999999999999999 8999998775 78999988776655432 358888999888877 5678
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCC-cceeeeecCCCceE
Q 013873 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS-QPINSFQWGTDTVI 207 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~ 207 (434)
.|++|++||+.++. ......+...+.++.++++. ++++.++.|++||+.++ +.+..+.. ...
T Consensus 79 ~d~~v~iWd~~~~~-------------~~~~~~~~~~v~~v~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQ-------------DVSRIKVDAPVKDLFLSREF-IVVSYGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp STTEEEEEETTTTE-------------EEEEEECSSCEEEEEECSSE-EEEEETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred CccEEEEEECCCCc-------------EEEEEECCCceEEEEEcCCE-EEEEEcCEEEEEECCCCceeeEEecc---CCc
Confidence 88999999998763 34455567789999998876 44456788999999988 77766665 444
Q ss_pred EEEEcCCCCcEEEE--EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc-eeeeeCcccCeEEEEEccCCC
Q 013873 208 SVRFNPAEPNVLAT--TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA-KCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 208 ~i~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.+++++ .++++ |+.||.|++||++............ +... ..+ ...+.+|...|++++|+|+|+
T Consensus 142 ~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~---------~~~~-~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 142 VCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV---------QQKA-ILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp EEEEET---TEEEEEESSCTTCEEEEECCC----------------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccc---------cccc-cCcccEEEEccCCceEEEEECCCCC
Confidence 566666 34444 6899999999998754221100000 0000 011 345678999999999999999
Q ss_pred EEEEEeCCCc-EEEEeCCCCeeeeEEecc-CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 285 EFVTGSYDRT-IRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 285 ~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+|++|+.|++ |++||+.+++.+..+..+ |...|++++|+|++++|++++.||.|++||+..+.
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999998 999999999998888733 66899999999999999999999999999998654
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.7e-34 Score=262.21 Aligned_cols=263 Identities=18% Similarity=0.251 Sum_probs=213.2
Q ss_pred HHHHhhhhccc----cccccccCCCCCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCCC-------ceeEEeeccCCCee
Q 013873 46 TAAKLEKIFAR----PFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVR 113 (434)
Q Consensus 46 ~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~ 113 (434)
+.+.+|++... ..+..+.+|.+.|++++|+| ++ .+|++|+.||+|++||+.++ +.+..+.+|...|.
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 44556665332 34567889999999999999 66 99999999999999999987 56788899999999
Q ss_pred EEEEcCCC-CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE---EecCceEEEeeccCCCEEEEeC--CeEEE
Q 013873 114 GLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY---VWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 114 ~i~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
+++|+|++ .+|++++.||.|++||+.++.. .... .+...+.+++|+|++.++++++ +.|++
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-------------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEE-------------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCc-------------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 99999998 6999999999999999987632 2222 3567899999999999988876 67999
Q ss_pred EeCCCCcceeee-ecCCCc-eEEEEEcCCCCcEEEEE---ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 188 WNHNRSQPINSF-QWGTDT-VISVRFNPAEPNVLATT---ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 188 ~d~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
||+++++.+..+ ..|.+. +.++.|+|++ .+|++| +.|+.|++||++........
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~-------------------- 261 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSL-------------------- 261 (402)
T ss_dssp EETTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEE--------------------
T ss_pred EeCCCCceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceE--------------------
Confidence 999999998888 677665 8999999987 788888 78999999999876542221
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCee-eeEEec-cCCccEEEEEEcCCCCEEEEeeCCCcEE
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVT-GSYDRTIRIFQYNGGRS-REIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLR 339 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 339 (434)
....|...+.+++|+|++++|++ |+.||.|++||+.+++. ...+.. .+...|.+++|+|++.++++ .++.++
T Consensus 262 ---~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~ 336 (402)
T 2aq5_A 262 ---QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR 336 (402)
T ss_dssp ---EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred ---EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence 11256778999999999999875 55799999999998873 333322 24578999999999998764 467999
Q ss_pred EeecCcccc
Q 013873 340 LWKAKASEQ 348 (434)
Q Consensus 340 vw~~~~~~~ 348 (434)
+|++.++..
T Consensus 337 ~~~l~~~~~ 345 (402)
T 2aq5_A 337 FYKLHERKC 345 (402)
T ss_dssp EEEEETTEE
T ss_pred EEEcCCCcE
Confidence 999987654
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-33 Score=261.06 Aligned_cols=247 Identities=21% Similarity=0.354 Sum_probs=206.2
Q ss_pred cccccccCCCCCe-EEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 57 PFIGALDGHRDGI-SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 57 ~~~~~l~~h~~~V-~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
+....+.+|.+.| .|+.++ + .+|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred cceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 3456889999885 666664 4 789999999999999999999999999999999999999987 9999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeec--cCCCEEEEeC--CeEEEEeCCCCcc----------------
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ--WEGDLFATAG--AQVDIWNHNRSQP---------------- 195 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~i~i~d~~~~~~---------------- 195 (434)
||+.++.. ......+...+.+++++ +++.++++++ +.|++||+.++..
T Consensus 188 wd~~~~~~------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 188 WDIKKGCC------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp EETTTTEE------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred EECCCCcE------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 99987632 22223366788888888 5777787776 6799999987653
Q ss_pred -------eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 196 -------INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 196 -------~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
+..+.+|...+.++. +++ .++++|+.||.|++||+++...... +.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~-------------------------~~ 307 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYI-------------------------LS 307 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEE-------------------------EC
T ss_pred cCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEE-------------------------ec
Confidence 445667778888774 445 7899999999999999987655433 34
Q ss_pred CcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 269 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+|...|.+++|+|++++|++|+.||.|++||+.+++....+..+ ...|.+++|+ +.+|++|+.||.|++||+.++..
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 79999999999999999999999999999999999988887654 4889999997 57999999999999999998765
Q ss_pred cc
Q 013873 349 LG 350 (434)
Q Consensus 349 ~~ 350 (434)
..
T Consensus 385 ~~ 386 (464)
T 3v7d_B 385 KF 386 (464)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.8e-34 Score=260.44 Aligned_cols=277 Identities=16% Similarity=0.254 Sum_probs=216.4
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcC-CCCeEEEeeCCCcEEEeeCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
.....++++|+...++++|+.||.|+||++... .....+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345578999987455667899999999999654 23455788999999999999 9999999999999999999877
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeee--ecCCCceEEEEEcCCCC
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSF--QWGTDTVISVRFNPAEP 216 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~ 216 (434)
....... ........+...+.+++|+|++ .++++++ +.|++||+.+++.+..+ ..|...|.+++|+|++
T Consensus 115 ~~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 188 (402)
T 2aq5_A 115 GLVLPLR-----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG- 188 (402)
T ss_dssp CCSSCBC-----SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-
T ss_pred CCccccC-----CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-
Confidence 4322110 1233444577899999999998 5777765 67999999999999988 7899999999999988
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC-eEEEEEccCCCEEEEE---eCC
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA-VMDIDYSPTGREFVTG---SYD 292 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~l~~~---~~d 292 (434)
.+|++++.||.|++||+++......+ ..+|.+. +.+++|+|++.+|++| +.|
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEK------------------------DRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEE------------------------ECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred CEEEEEecCCcEEEEeCCCCceeeee------------------------ccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 78999999999999999876544332 1356665 8999999999999999 789
Q ss_pred CcEEEEeCCCCee-eeEEeccCCccEEEEEEcCCCCEEE-EeeCCCcEEEeecCcccc-cccCChhhhhhhHHHHHHHHh
Q 013873 293 RTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVI-SGSDDTNLRLWKAKASEQ-LGVLHPREQRKHAYHEAVKNR 369 (434)
Q Consensus 293 ~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 369 (434)
+.|++||+.++.. .......+...+.+++|+|++++|+ +|+.||.|++|++.+++. +..+..
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--------------- 309 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--------------- 309 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---------------
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---------------
Confidence 9999999988764 3334434457899999999999986 455799999999998874 333321
Q ss_pred hccchhhhhhhhccCCChH
Q 013873 370 YKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~ 388 (434)
+.+...+.+++|+|.....
T Consensus 310 ~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 310 FSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp ECCSSCCSEEEECCGGGSC
T ss_pred cccCCcccceEEecccccc
Confidence 1244667777777765433
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-34 Score=299.18 Aligned_cols=304 Identities=17% Similarity=0.261 Sum_probs=241.5
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (434)
+.|...........+.+++|+..+...+..+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.+++.+..+.+|...
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 701 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 34444444444455668899999999999999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEcC--CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEE
Q 013873 112 VRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 112 v~~i~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
|.+++|+| ++.++++|+.||.|++||+.++.. ......+...+.+++++|++..+++++ +.|++
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC------------RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE------------EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECCCcch------------hheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 99999999 556899999999999999987743 222334566788888888888887775 56888
Q ss_pred EeCCCCcceee------------------------------------------------------ee-cCCCceEEEEEc
Q 013873 188 WNHNRSQPINS------------------------------------------------------FQ-WGTDTVISVRFN 212 (434)
Q Consensus 188 ~d~~~~~~~~~------------------------------------------------------~~-~~~~~i~~i~~~ 212 (434)
||+.+++.... +. .|...+.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 88765543222 11 566788999999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcce------------------EEEeeecCceeEEEeeCCCCcc------------
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPAR------------------KVIMRANEDCNCYSYDSRKLDE------------ 262 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~------------ 262 (434)
|++ .++++++.||.|++||+.+..... ...+.++.++.+.+|+......
T Consensus 850 p~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 850 PYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp SST-TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 988 789999999999999988654322 2344566778888887542100
Q ss_pred ------------------------ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEE
Q 013873 263 ------------------------AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 318 (434)
Q Consensus 263 ------------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 318 (434)
.......+...+.+++|+|+++++++|+.||.|++||+.++.....+.. |...|+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~-h~~~v~ 1007 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVR 1007 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-CSSCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-CCCceE
Confidence 0001112356799999999999999999999999999999887776654 448899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 319 CVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
+++|+|++++|++++.||.|++|++.+++.+.
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 99999999999999999999999999887653
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-33 Score=258.50 Aligned_cols=269 Identities=15% Similarity=0.198 Sum_probs=215.7
Q ss_pred cccCCCCC--eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec-cCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 61 ALDGHRDG--ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 61 ~l~~h~~~--V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
...+|.+. +.+++|++ ..+++++.||.|++||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 34577766 44566665 4478888999999999999998877765 889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCC-CCcceeeeecCCCceEEEEEcCC
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHN-RSQPINSFQWGTDTVISVRFNPA 214 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~ 214 (434)
+.++.. ......+...+.++.++ +..+++++ +.|.+||++ ....+..+..|...|.+++|+|+
T Consensus 163 ~~~~~~------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 163 VESQTK------------LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp TTTCCE------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred CcCCeE------------EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence 987632 22233456788888884 45666665 679999998 56678888899999999999998
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEe--C
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS--Y 291 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~--~ 291 (434)
+ .+|++|+.||.|++||++....... +.+|...|.+++|+|++. ++++|+ .
T Consensus 229 ~-~~l~s~~~d~~v~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 229 G-LQLASGGNDNVVQIWDARSSIPKFT-------------------------KTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp S-SEEEEEETTSCEEEEETTCSSEEEE-------------------------ECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred C-CEEEEEeCCCeEEEccCCCCCccEE-------------------------ecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 7 7999999999999999987654433 347899999999999775 555554 6
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEE--eeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHh
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS--GSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNR 369 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
|+.|++||+.+++....+... ..|.+++|+|++++|++ |+.||.|++|++.+++...... .
T Consensus 283 d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~---------------~ 345 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD---------------I 345 (401)
T ss_dssp TCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE---------------E
T ss_pred CCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE---------------e
Confidence 999999999999888777533 68999999999999998 5589999999998866544321 1
Q ss_pred hccchhhhhhhhccCCChHH
Q 013873 370 YKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~ 389 (434)
..|...|..++|+|..+.++
T Consensus 346 ~~h~~~v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 346 PAHDTRVLYSALSPDGRILS 365 (401)
T ss_dssp ECCSSCCCEEEECTTSSEEE
T ss_pred cCCCCCEEEEEECCCCCEEE
Confidence 25677888899998776544
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-33 Score=260.04 Aligned_cols=257 Identities=19% Similarity=0.396 Sum_probs=208.6
Q ss_pred HHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE
Q 013873 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV 125 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 125 (434)
+.+++|+..+...+..+.+|.+.|.+++| ++ .+|++|+.||+|++||+.+++.+..+.+|...|.+++|++ .+|+
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~ 227 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMV 227 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEE
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEE
Confidence 34667888788888899999999999999 55 8999999999999999999999999999999999999974 5999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+|+.||.|++||+.++.... .......+...+.++.+ ++..+++++ +.|++||+.+++.+..+..|.
T Consensus 228 s~s~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (435)
T 1p22_A 228 TCSKDRSIAVWDMASPTDIT---------LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296 (435)
T ss_dssp EEETTSCEEEEECSSSSCCE---------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EeeCCCcEEEEeCCCCCCce---------eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence 99999999999998764210 01223345567888887 667777765 679999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
..|.++.++ + .++++|+.||.|++||++++.....+ .+|...|.+++| ++
T Consensus 297 ~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 297 RGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVL-------------------------EGHEELVRCIRF--DN 346 (435)
T ss_dssp SCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEEEE-------------------------CCCSSCEEEEEC--CS
T ss_pred CcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEEEEE-------------------------eCCcCcEEEEEe--cC
Confidence 999999995 3 78999999999999999887654433 479999999999 78
Q ss_pred CEEEEEeCCCcEEEEeCCCCe---------eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 284 REFVTGSYDRTIRIFQYNGGR---------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
.+|++|+.||.|++||+.++. ....+. .|.+.|++++| ++.+|++|+.||.|++||+.+......
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 899999999999999987654 455554 44588999999 788899999999999999988765443
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-33 Score=269.72 Aligned_cols=258 Identities=16% Similarity=0.250 Sum_probs=217.0
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCC-eeEEEEcC--CCCeEEEeeCCCcEEE
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGA-VRGLTVST--DGRILVSCGTDCTVKL 135 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~-v~~i~~~~--~~~~l~s~~~dg~v~i 135 (434)
..|.+.|++++|+|++ .+|++++ ++.|++||+.++ +....+.+|... |++++|+| ++++|++++.||.|++
T Consensus 15 ~~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 5789999999999999 8899988 889999999998 889999999999 99999999 9999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC------eEEEEeCCCCcceeeeecCCCceEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA------QVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
||+.++...... ..........+...+.+++|+|++..+++++. .|.+|| .++.+..+..|...|.++
T Consensus 93 w~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 93 WGWTFDKESNSV----EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEGGGTEE----EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EeCCCCcccccc----cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 999643100000 00111222335678999999999999998863 455555 778888999999999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc---CeEEEEEccC-CCE
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES---AVMDIDYSPT-GRE 285 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~sp~-~~~ 285 (434)
+|+|++..+|++++.||.|++||+........ +.+|.. .|++++|+|+ +++
T Consensus 167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-------------------------DRTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp EECSSSSCEEEEEETTTEEEEEETTTBEEEEE-------------------------ECSSSCTTCCEEEEEECSTTCCE
T ss_pred EECCCCCcEEEEEeCCCcEEEEeCCCcceeee-------------------------ecccCCCCceEEEEEECCCCCCE
Confidence 99999866899999999999999876554433 346888 9999999999 999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEec---cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCCh
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHT---KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 354 (434)
|++++.||.|++||+.+++....+.. .+...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..
T Consensus 222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 99999999999999999988887733 566899999999 999999999999999999999888766643
No 86
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-33 Score=276.95 Aligned_cols=324 Identities=10% Similarity=0.082 Sum_probs=231.3
Q ss_pred HHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-----------EEeeccCC
Q 013873 42 VRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-----------CQYSGHQG 110 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~~~~h~~ 110 (434)
....+.+++|++.++..+..+. |.+.|++++|+|++ .+|++|+.||+|++||+.+++.. ..+.+|.+
T Consensus 75 ~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 75 INAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 3345567889988888887886 77899999999999 99999999999999999988753 23467999
Q ss_pred CeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc------eeEEEecCceEEEeeccCCCEEEEeC-
Q 013873 111 AVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP------LAVYVWKNSFWAVDHQWEGDLFATAG- 182 (434)
Q Consensus 111 ~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (434)
+|++++|+|+ +..|++|+.||.| +||+.++.....+........+ .....+...+.+++|+|+|.++++++
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 9999999995 5789999999999 9999877543222211000000 00011235799999999999999986
Q ss_pred -CeEEEEeCCCCcceee--e---ec-------------CCCceEEEEEc----CCCCcEEEEEe----------------
Q 013873 183 -AQVDIWNHNRSQPINS--F---QW-------------GTDTVISVRFN----PAEPNVLATTA---------------- 223 (434)
Q Consensus 183 -~~i~i~d~~~~~~~~~--~---~~-------------~~~~i~~i~~~----~~~~~~l~~~~---------------- 223 (434)
+.|++||+.+++++.. + .. +...|.+++|+ |++..+|++|+
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 5699999998877643 2 11 23468888884 33223444443
Q ss_pred ------------------------------------------------------------cCCcEEEEEccCCC------
Q 013873 224 ------------------------------------------------------------SDRSITLYDLRMSS------ 237 (434)
Q Consensus 224 ------------------------------------------------------------~dg~i~iwd~~~~~------ 237 (434)
.||.|++||+.++.
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 34556666653321
Q ss_pred -----------------------------------------------------cceEEEeeecCceeEEEeeCCCCccce
Q 013873 238 -----------------------------------------------------PARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 238 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
+...+.+.+..++.+.+||........
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 113345567778888888876542110
Q ss_pred -eee---------eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe------------------------------
Q 013873 265 -CVH---------MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR------------------------------ 304 (434)
Q Consensus 265 -~~~---------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------------------------------ 304 (434)
..+ .+|...|++++|+|+|++||+|+.||+|+|||+.+++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEE
T ss_pred CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccc
Confidence 011 1788999999999999999999999999999998662
Q ss_pred ---------------eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHh
Q 013873 305 ---------------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNR 369 (434)
Q Consensus 305 ---------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
++..+.. |.+.|++++|+||| +||+|+.||.|++||+.+...+..... ...
T Consensus 552 ~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~------------~~~ 617 (902)
T 2oaj_A 552 DVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI------------REI 617 (902)
T ss_dssp ECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG------------GGT
T ss_pred cccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh------------hHh
Confidence 1333333 55899999999999 999999999999999987665421000 011
Q ss_pred h-ccchhhhhhhhc
Q 013873 370 Y-KHLPEIKRIVRH 382 (434)
Q Consensus 370 ~-~~~~~v~~~~~~ 382 (434)
. +|...|++++|.
T Consensus 618 ~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 618 SGAQSACVTCIEFV 631 (902)
T ss_dssp CSSCCCCEEEEEEE
T ss_pred ccccccceEEEEEE
Confidence 1 577778888888
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=265.16 Aligned_cols=253 Identities=12% Similarity=0.056 Sum_probs=192.8
Q ss_pred CCCCeEEEEeCCCC-C-------ceEEe-------------------eeCCCcEEEEeCCCCcee----EEeeccCCCee
Q 013873 65 HRDGISCMAKNPNY-L-------KGFFS-------------------GSMDGDIRLWDIANRRTV----CQYSGHQGAVR 113 (434)
Q Consensus 65 h~~~V~~~~~~~~~-~-------~~l~s-------------------g~~dg~i~iwd~~~~~~~----~~~~~h~~~v~ 113 (434)
+.+.|.+|+|+|++ . ++||+ |+.||+|+|||+.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57789999999874 1 45555 557889999999877642 34667889999
Q ss_pred EEEEcCC------CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeE
Q 013873 114 GLTVSTD------GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 114 ~i~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
+++|+|+ +.+|++++.||+|++||+..+........ ...........+...+.+++|++++ .+++++ +.|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK-MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEE
Confidence 9999996 57999999999999999976643210000 0000112233456789999999875 566664 679
Q ss_pred EEEeCCCC-cceeeeecCCCceEEE--EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 186 DIWNHNRS-QPINSFQWGTDTVISV--RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 186 ~i~d~~~~-~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
++||++++ .+...+..|...|.++ .|+|++..+|++|+.||+|++||+++......+
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-------------------- 349 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-------------------- 349 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE--------------------
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc--------------------
Confidence 99999976 4556688999999999 466665479999999999999999876654433
Q ss_pred ceeeeeCcc--cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE
Q 013873 263 AKCVHMGHE--SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 263 ~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v 340 (434)
.+|. ..|.+++|+|+++.|++++.|++|++||++++.....+.. |...|++++|+|+|++|++|+.||.|++
T Consensus 350 -----~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~l 423 (524)
T 2j04_B 350 -----VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLII 423 (524)
T ss_dssp -----EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEEC
T ss_pred -----ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEE
Confidence 2343 2578999999999999999999999999999887666655 5589999999999999999999999999
Q ss_pred eecCc
Q 013873 341 WKAKA 345 (434)
Q Consensus 341 w~~~~ 345 (434)
||+..
T Consensus 424 wd~~~ 428 (524)
T 2j04_B 424 TNAAR 428 (524)
T ss_dssp CBSCS
T ss_pred EechH
Confidence 99754
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=255.00 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=198.8
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEeec-----------------------------------
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSG----------------------------------- 107 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~----------------------------------- 107 (434)
..++.+++|+|+| .+|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 3578999999999 666655 57899999999998 6555543
Q ss_pred -------------------cCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCC--CCCCCCCCCCCCCCCCceeEEEecCc
Q 013873 108 -------------------HQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVP--VATLTDSDDSTDNSSEPLAVYVWKNS 165 (434)
Q Consensus 108 -------------------h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
|.+.|++++|+|++++| ++++.||.|++||+. ++... .......+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~ 151 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL----------KLRKRFCFSKR 151 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE----------EEEEEEECSSC
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee----------eeeecccCCCC
Confidence 33379999999999996 889999999999997 44221 11111244578
Q ss_pred eEEEeeccCCCEEEEeC--CeEEEEeCCCCccee----eeecCCCceEEEEEcCC---CCcEEEEEecCCcEEEEEccCC
Q 013873 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN----SFQWGTDTVISVRFNPA---EPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
+.+++|+|++.++++++ +.+.+|++.++.... .+..|...|.+++|+|+ + .+|++|+.|+.|++||+++.
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC
Confidence 99999999999998886 679999998876554 77889999999999998 6 79999999999999999876
Q ss_pred CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc----
Q 013873 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK---- 312 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---- 312 (434)
.....+ ..+|...|++++|+ ++++|++|+.|+.|++||+.+++.+..+..+
T Consensus 231 ~~~~~~------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 231 FIVDKW------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp TCEEEE------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred ceeeee------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 654432 24799999999999 9999999999999999999999887766421
Q ss_pred --------------------CCccEEEEEEcCCCCEEEEee-CCCcEEEeec--Ccc
Q 013873 313 --------------------RMQRVFCVKFSCDASYVISGS-DDTNLRLWKA--KAS 346 (434)
Q Consensus 313 --------------------~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~--~~~ 346 (434)
....|.+++|+|++++|++++ .|+.|++|++ .++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 224689999999999999998 8999999999 554
No 89
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-33 Score=281.18 Aligned_cols=279 Identities=19% Similarity=0.236 Sum_probs=231.7
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (434)
++|...........+.+.+|+..++..+..+.+|...|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|.+.
T Consensus 21 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCC
Confidence 33434433333334457788888888899999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEE
Q 013873 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIW 188 (434)
Q Consensus 112 v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~ 188 (434)
|++++|+|++++|++++.||.|++||+.++.. .......+...+.+++|+| ++..+++++ +.|.+|
T Consensus 100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999999999975521 1223334567899999999 788888775 679999
Q ss_pred eCCCCcceeeeecCC-CceEEEEEcC--CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 189 NHNRSQPINSFQWGT-DTVISVRFNP--AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 189 d~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
|+..+.....+..+. ..+.+++|+| ++ .+|++++.||.|++||+++......
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~------------------------ 223 (814)
T 3mkq_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVAT------------------------ 223 (814)
T ss_dssp ETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEE------------------------
T ss_pred ECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEE------------------------
Confidence 999888887777655 8899999999 66 7899999999999999987654433
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC--EEEEeeCCCcEEEeec
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKA 343 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~ 343 (434)
+.+|...|.+++|+|++++|++++.||.|++||+.+++....+..+. ..+.+++|+|++. +++++ .++.+.+|++
T Consensus 224 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (814)
T 3mkq_A 224 -LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTGRKNYIASG-FDNGFTVLSL 300 (814)
T ss_dssp -EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-SSEEEEEECTTCGGGEEEEE-ETTEEEEEEC
T ss_pred -EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-CcEEEEEEccCCCceEEEEE-eCCCEEEEEc
Confidence 34788999999999999999999999999999999998877776554 7899999999987 45555 4667899998
Q ss_pred Ccccccc
Q 013873 344 KASEQLG 350 (434)
Q Consensus 344 ~~~~~~~ 350 (434)
..+....
T Consensus 301 ~~~~~~~ 307 (814)
T 3mkq_A 301 GNDEPTL 307 (814)
T ss_dssp SCCSCCE
T ss_pred CCCCcee
Confidence 7655443
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.6e-32 Score=250.84 Aligned_cols=235 Identities=22% Similarity=0.450 Sum_probs=199.1
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
...+|...|.|+.| ++ .+|++|+.||.|++||+.+++....+.+|.+.|.+++| ++++|++|+.||.|++||+.+
T Consensus 128 ~~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 34567788999998 55 89999999999999999999999999999999999999 678999999999999999987
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcce---eeeecCCCceEEEEEcCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI---NSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~ 215 (434)
+... .....+...+.++.++++ .+++++ +.|++||+.++... ..+.+|...|.+++|. +
T Consensus 203 ~~~~------------~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 266 (435)
T 1p22_A 203 GEML------------NTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D 266 (435)
T ss_dssp CCEE------------EEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T
T ss_pred CcEE------------EEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C
Confidence 7432 222345667888888754 565554 67999999988766 6677889999999993 4
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
.++++|+.||.|++||+++......+ .+|...|.+++| +++++++|+.||.|
T Consensus 267 -~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~v~~~~~--~~~~l~~g~~dg~i 318 (435)
T 1p22_A 267 -KYIVSASGDRTIKVWNTSTCEFVRTL-------------------------NGHKRGIACLQY--RDRLVVSGSSDNTI 318 (435)
T ss_dssp -TEEEEEETTSEEEEEETTTCCEEEEE-------------------------ECCSSCEEEEEE--ETTEEEEEETTSCE
T ss_pred -CEEEEEeCCCeEEEEECCcCcEEEEE-------------------------cCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 78999999999999999887655433 478899999999 56899999999999
Q ss_pred EEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 296 RIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
++||+++++....+..+ ...|.+++| ++.+|++|+.||.|++||+.+++
T Consensus 319 ~iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 319 RLWDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEETTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEEECCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999888877654 478999999 78899999999999999998776
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.9e-33 Score=242.38 Aligned_cols=235 Identities=17% Similarity=0.228 Sum_probs=185.9
Q ss_pred hhhhhHHHHHHHHhhhhcc--ccccccccCCCCCeEEEEeCCC--CCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCC
Q 013873 37 KAVEYVRALTAAKLEKIFA--RPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQG 110 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~ 110 (434)
+..........+++|++.. ..++.+|.+|.+.|++++|+|+ + .+|++|+.||+|++||+.+++ .+..+.+|..
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~ 100 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVHAVHSA 100 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC
Confidence 3333333445567777643 3577889999999999999874 5 899999999999999998874 5667788999
Q ss_pred CeeEEEEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC-------------C
Q 013873 111 AVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-------------G 175 (434)
Q Consensus 111 ~v~~i~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 175 (434)
.|.+++|+|+ +.+|++++.||.|++||+..... ........+...+.+++|+|+ +
T Consensus 101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------BCCEEEECCSSCEEEEEECCCC------------C
T ss_pred ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------eeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 9999999997 88999999999999999976521 112334456778999999997 4
Q ss_pred CEEEEeC--CeEEEEeCCCCc----ceeeeecCCCceEEEEEcCCC--CcEEEEEecCCcEEEEEccCCCcceEEEeeec
Q 013873 176 DLFATAG--AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKVIMRAN 247 (434)
Q Consensus 176 ~~~~~~~--~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 247 (434)
.++++++ +.|++||+++++ ....+.+|...|.+++|+|++ ..+|++++.|++|++||++..........
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~--- 247 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL--- 247 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE---
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee---
Confidence 6788775 679999998766 556788899999999999985 47999999999999999976432111000
Q ss_pred CceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
.....|...|.+++|+|+|++|++++.|+.|++|+...
T Consensus 248 -----------------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 -----------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp -----------------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred -----------------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 00135788999999999999999999999999999763
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=259.29 Aligned_cols=279 Identities=15% Similarity=0.261 Sum_probs=207.4
Q ss_pred CCChhhhhhhHHHHHHHHhhhhcccc-----------ccccccCCC------------CCeEEEEeCCCCC-ceEEeeeC
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARP-----------FIGALDGHR------------DGISCMAKNPNYL-KGFFSGSM 87 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~h~------------~~V~~~~~~~~~~-~~l~sg~~ 87 (434)
+.|.............+++|++.... ++..+.+|. +.|++++|+|++. .+|++|+.
T Consensus 36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~ 115 (447)
T 3dw8_B 36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115 (447)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence 44444444444445556777776554 577889998 8899999999963 58999999
Q ss_pred CCcEEEEeCCCCcee---------------------------------------EE-eeccCCCeeEEEEcCCCCeEEEe
Q 013873 88 DGDIRLWDIANRRTV---------------------------------------CQ-YSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 88 dg~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
||+|++||+.++... .. ..+|...|++++|+|++++|++|
T Consensus 116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 195 (447)
T 3dw8_B 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA 195 (447)
T ss_dssp SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence 999999998764432 12 36799999999999999999998
Q ss_pred eCCCcEEEeeCCCCC-CCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcc----eeee
Q 013873 128 GTDCTVKLWNVPVAT-LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQP----INSF 199 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~----~~~~ 199 (434)
.||.|++||+.... ...... ..+.....+...+.+++|+|++ .++++++ +.|++||+++++. +..+
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVD-----IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEE-----CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred -CCCeEEEEECCCCCceeeeee-----cccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 79999999997331 100000 0000112355679999999998 8888876 6799999999886 6778
Q ss_pred ecCCC------------ceEEEEEcCCCCcEEEEEecCCcEEEEEccC-CCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 200 QWGTD------------TVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 200 ~~~~~------------~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
..|.. .|.+++|+|++ .+|++++. |.|++||++. ..+...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~------------------------ 323 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETY------------------------ 323 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCE------------------------
T ss_pred ccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcccccee------------------------
Confidence 77765 89999999988 78888888 9999999986 5544433
Q ss_pred eeCccc---------------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEec--------------------
Q 013873 267 HMGHES---------------AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT-------------------- 311 (434)
Q Consensus 267 ~~~~~~---------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------- 311 (434)
.+|.. .+..++|+|++++|++|+.||.|++||+.+++.......
T Consensus 324 -~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 324 -QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp -ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred -eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 23432 134599999999999999999999999998876532211
Q ss_pred -----------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 312 -----------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 312 -----------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.....|.+++|+|++.+||+++.++ +++|..+
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1124688999999999999998775 8888643
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.3e-32 Score=247.91 Aligned_cols=264 Identities=14% Similarity=0.224 Sum_probs=212.0
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.++.|+|+++ ++||+|. |++|+|||..+++....+. +|...|++++|+|+|++|++|+.||+|++||+.+++..
T Consensus 107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~- 182 (420)
T 4gga_A 107 YLNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL- 182 (420)
T ss_dssp TCBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred cceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE-
Confidence 4678999986 6777765 8999999999998877654 67788999999999999999999999999999877432
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC-cceeeeecCCCceEEEEEcCCCCcEEEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
.....+...+.++++ ++.++++++ +.+.+||.... ..+..+..|...+..+.++|++ .+++++
T Consensus 183 -----------~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 183 -----------RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp -----------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred -----------EEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-Ceeeee
Confidence 222234455555555 567777775 56999998764 4567788899999999999998 799999
Q ss_pred ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEE--EeCCCcEEEEe
Q 013873 223 ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVT--GSYDRTIRIFQ 299 (434)
Q Consensus 223 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~--~~~d~~i~iwd 299 (434)
+.||.+++|+......... .......|...|.+++|+|++. ++++ |+.|++|++||
T Consensus 249 ~~D~~v~i~~~~~~~~~~~---------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWV---------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp ETTSCEEEEESSCCSSCSC---------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred eccccceEEeeccccccce---------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 9999999999987653321 1223457899999999999654 5554 45799999999
Q ss_pred CCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee--CCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhh
Q 013873 300 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIK 377 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 377 (434)
+.++.....+..+ ..+.++.|+|+++.+++++ .||.|+|||+.+++++..+. +|...|.
T Consensus 308 ~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------------gH~~~V~ 368 (420)
T 4gga_A 308 VCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------------GHTSRVL 368 (420)
T ss_dssp TTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------------CCSSCEE
T ss_pred CCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------------CCCCCEE
Confidence 9999988777654 6799999999999888765 79999999999999887764 6788899
Q ss_pred hhhhccCCChHH
Q 013873 378 RIVRHRHLPKPI 389 (434)
Q Consensus 378 ~~~~~~~~~~~~ 389 (434)
+++|+|....++
T Consensus 369 ~l~~spdg~~l~ 380 (420)
T 4gga_A 369 SLTMSPDGATVA 380 (420)
T ss_dssp EEEECTTSSCEE
T ss_pred EEEEcCCCCEEE
Confidence 999999876554
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.4e-33 Score=248.75 Aligned_cols=276 Identities=11% Similarity=0.075 Sum_probs=201.9
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCC-------cEEEEeCCCCce----------eEEeeccCCCeeEEEEcCCCCeEEEe-
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDG-------DIRLWDIANRRT----------VCQYSGHQGAVRGLTVSTDGRILVSC- 127 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg-------~i~iwd~~~~~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~- 127 (434)
.-+|+|++|+|++ .+|++|+.|. .|++|++..... ...+.+|...|.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 4589999999999 9999987543 599999875532 12456788899888775 4456654
Q ss_pred ----------eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCC
Q 013873 128 ----------GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRS 193 (434)
Q Consensus 128 ----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~ 193 (434)
+.|+.+++|++............ ............+.+++|+|||.++++++ +.|+|||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS---VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE---ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeee---eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 45778999987654311000000 00000001123467899999999876543 46999999999
Q ss_pred cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccC
Q 013873 194 QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESA 273 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (434)
+.+..+. |...|.+++|+|++ .++++++. +.+.+|+..++...... ...+|...
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 221 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARK-----------------------TDFDKNWS 221 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEE-----------------------CCCCTTEE
T ss_pred cEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeee-----------------------ecCCCCCC
Confidence 9988886 66789999999998 78888875 55667776655433221 22368889
Q ss_pred eEEEEEccCCCEEEEEeCCC----cEEEEeCCCCeeeeE---EeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 274 VMDIDYSPTGREFVTGSYDR----TIRIFQYNGGRSREI---YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 274 i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
|.+++|+|+++++++++.|+ .+++||+........ ....+...|++++|+|||++||+|+.||.|+|||+.++
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 99999999999999999887 688899877654322 12345578999999999999999999999999999999
Q ss_pred cccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 347 EQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
+++..+.. +|...|++++|+|....++
T Consensus 302 ~~~~~~~~----------------gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 302 SMSKIFKQ----------------AHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEEEETT----------------SSSSCEEEEEECTTSCEEE
T ss_pred cEEEEecC----------------cccCCEEEEEECCCCCEEE
Confidence 98876422 6888999999999877544
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-32 Score=243.32 Aligned_cols=264 Identities=11% Similarity=0.061 Sum_probs=206.7
Q ss_pred HHHHHHhhhhcccc---ccccccCCCCCeEEEEeCCCCCc-eEEeeeCCCcEEEEeC-CCCceeEEeec--cCCCeeEEE
Q 013873 44 ALTAAKLEKIFARP---FIGALDGHRDGISCMAKNPNYLK-GFFSGSMDGDIRLWDI-ANRRTVCQYSG--HQGAVRGLT 116 (434)
Q Consensus 44 ~~~~~~~~~~~~~~---~~~~l~~h~~~V~~~~~~~~~~~-~l~sg~~dg~i~iwd~-~~~~~~~~~~~--h~~~v~~i~ 116 (434)
....+++|++.... ....+.+|...|++++|+|++ . +|++|+.||.|++||+ .+++. ..+.+ |...|.+++
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRIC 108 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEE
Confidence 34456677766554 245567999999999999998 8 9999999999999999 77654 67788 999999999
Q ss_pred EcCCCCeEEEeeCCCcEEEeeCCC---------CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEE
Q 013873 117 VSTDGRILVSCGTDCTVKLWNVPV---------ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187 (434)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 187 (434)
|+| +.+|++++.||.|++||+.+ ...... ..+...+.++++++++.+.++.++.|.+
T Consensus 109 ~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~l~~~~~d~~i~i 174 (342)
T 1yfq_A 109 KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-------------TKVKNKIFTMDTNSSRLIVGMNNSQVQW 174 (342)
T ss_dssp EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-------------SSSCCCEEEEEECSSEEEEEESTTEEEE
T ss_pred eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-------------EeeCCceEEEEecCCcEEEEeCCCeEEE
Confidence 999 99999999999999999876 432211 1145678899999998333333478999
Q ss_pred EeCCC-Ccc--eeeeecCCCceEEEEEcC-CCCcEEEEEecCCcEEEEEccCC------CcceEEEeeecCceeEEEeeC
Q 013873 188 WNHNR-SQP--INSFQWGTDTVISVRFNP-AEPNVLATTASDRSITLYDLRMS------SPARKVIMRANEDCNCYSYDS 257 (434)
Q Consensus 188 ~d~~~-~~~--~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~ 257 (434)
||+.+ +.. ......+...+.+++|+| ++ .+|++++.||.|++|+++.. .....+......
T Consensus 175 ~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~--------- 244 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN--------- 244 (342)
T ss_dssp EESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC---------
T ss_pred EECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc---------
Confidence 99988 543 334445778899999999 88 79999999999999999876 333222100000
Q ss_pred CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
....+|...|++++|+|++++|++++.||.|++||+.+++....+..+|...|++++ |++++|++|+.||.
T Consensus 245 -------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 245 -------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp -------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred -------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 000134559999999999999999999999999999999988887766468999999 99999999999998
Q ss_pred -EEEee
Q 013873 338 -LRLWK 342 (434)
Q Consensus 338 -v~vw~ 342 (434)
.+.|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 55555
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=254.44 Aligned_cols=283 Identities=12% Similarity=0.145 Sum_probs=209.1
Q ss_pred HHHHHHhhhhcc---cc-cccccc-CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC---CCceeEEeec--------
Q 013873 44 ALTAAKLEKIFA---RP-FIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA---NRRTVCQYSG-------- 107 (434)
Q Consensus 44 ~~~~~~~~~~~~---~~-~~~~l~-~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~-------- 107 (434)
....+++|++.. .. +...+. +|...|++++|+|++ .+|++|+.||+|++||+. +++....+..
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence 344556666654 22 111222 699999999999998 999999999999999995 5544443332
Q ss_pred ----cCCCeeEEE--EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE---ecCceEEEeeccCCCEE
Q 013873 108 ----HQGAVRGLT--VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLF 178 (434)
Q Consensus 108 ----h~~~v~~i~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 178 (434)
+...+.++. +++++.+|++|+.||.|++||+.++. ...... +...+.+++++|++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~h~~~v~~~~~s~~~~~l 229 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-------------RLQIIENSPRHGAVSSICIDEECCVL 229 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-------------EEEEEECCGGGCCEEEEEECTTSCEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-------------eeEEEccCCCCCceEEEEECCCCCEE
Confidence 455666776 55789999999999999999998763 222232 56799999999999999
Q ss_pred EEeC--CeEEEEeCCCCcceeeee-cCCCceEEEEEcCC---CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 179 ATAG--AQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPA---EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
++++ +.|++||+++++++..+. .|...|.+++|+|. +..+|++|+.||.|++||+++......+...... ...
T Consensus 230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~ 308 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ-PSM 308 (437)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC-CCG
T ss_pred EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC-Ccc
Confidence 9886 569999999999988876 67789999977763 2269999999999999999987765554321100 000
Q ss_pred EEeeCCCCccceeeeeC--cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc------------------
Q 013873 253 YSYDSRKLDEAKCVHMG--HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK------------------ 312 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------ 312 (434)
..|...........+.+ |...|++++|+ ++++|++|+.|+.|++||+.+++....+..+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM 387 (437)
T ss_dssp GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence 00000000000011223 88899999999 7899999999999999999988776665442
Q ss_pred ------------------CCccEEEEEEcCC--CCEEEEeeCCCcEEEee
Q 013873 313 ------------------RMQRVFCVKFSCD--ASYVISGSDDTNLRLWK 342 (434)
Q Consensus 313 ------------------~~~~v~~~~~s~~--~~~l~s~~~dg~v~vw~ 342 (434)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5688999999998 78999999999999995
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-31 Score=238.58 Aligned_cols=285 Identities=15% Similarity=0.243 Sum_probs=213.6
Q ss_pred eeeCCCc--EEEEeC--CCCceeEEeeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCce-
Q 013873 84 SGSMDGD--IRLWDI--ANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL- 157 (434)
Q Consensus 84 sg~~dg~--i~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~- 157 (434)
+|...|+ ++++.. ++.....+|++|.+.|++|+|+|+ +++|+||+.||+|++||+....... ..+.
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~ 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQR 80 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEE
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeE
Confidence 4444454 333333 334456679999999999999997 6899999999999999997654211 1111
Q ss_pred eEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC
Q 013873 158 AVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 235 (434)
....+...+.++.|+|++.++++++ +.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+..
T Consensus 81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTS
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCC
Confidence 2233567899999999999999886 569999999999888888888899999999988 7889999999999999864
Q ss_pred CCcc---------------------eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 236 SSPA---------------------RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 236 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
.... ..+...+..++.+.+|+..... ....+.+|...|++++|+|++++|++|+.||.
T Consensus 160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 3211 1123446677888999987643 44566789999999999999999999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccch
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLP 374 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (434)
|++||+.+.+.+..+..+ ..+.+++|+|++.++ +++.|+.|++||+.++..+..+...... .....|..
T Consensus 239 i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~h~~ 307 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS--------TSSKAEPP 307 (340)
T ss_dssp EEEEETTTTEEEEEEECS--SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------------CCCC
T ss_pred EEEEEeccCceeeeecCC--ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee--------eeccCCCC
Confidence 999999999888777554 689999999998755 5567999999999988877766543221 12236788
Q ss_pred hhhhhhhccCCChHH
Q 013873 375 EIKRIVRHRHLPKPI 389 (434)
Q Consensus 375 ~v~~~~~~~~~~~~~ 389 (434)
.|.+++|+|....++
T Consensus 308 ~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 308 QCTSLAWSADGQTLF 322 (340)
T ss_dssp CEEEEEECTTSSEEE
T ss_pred CEEEEEECCCCCEEE
Confidence 899999998766443
No 98
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=267.82 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=200.2
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
..||.+.|++++|+|++ .+||+|+.||+|+||+..+.+....+. |...|.+++|+| +++|++++.|++|++||+.++
T Consensus 13 ~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred ccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 45899999999999999 999999999999999998877665554 788999999999 789999999999999999876
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcce-----------eeeecCCCceEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI-----------NSFQWGTDTVIS 208 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~-----------~~~~~~~~~i~~ 208 (434)
. ....+.+...+.+++++|++.++++++ +.|++||+.+++.. ..+..|.+.|.+
T Consensus 90 ~-------------~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 90 K-------------VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp S-------------EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred c-------------EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 3 333445667899999999999999886 67999999987753 234568889999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 209 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
++|+|++...|++|+.||.| +||++.......+........ ...... ......|...|++++|+|+|++|++
T Consensus 157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~------~~~~~~-~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFA------PGGDFS-EKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTC------CCSTTC-CCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcC------CCcccc-cccccccCCCeEEEEEcCCCCEEEE
Confidence 99999766789999999999 999998766544421100000 000000 0112356788999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEe-----cc------------CCccEEEEEEc----CCC-CEEEEeeCC-----CcEEEe
Q 013873 289 GSYDRTIRIFQYNGGRSREIYH-----TK------------RMQRVFCVKFS----CDA-SYVISGSDD-----TNLRLW 341 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~-----~~------------~~~~v~~~~~s----~~~-~~l~s~~~d-----g~v~vw 341 (434)
|+.||.|++||+++++++.... .+ +...|++++|+ |++ .+|++|+.| +.+.+|
T Consensus 229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999999999987765311 11 23479999995 443 567777665 378899
Q ss_pred ec
Q 013873 342 KA 343 (434)
Q Consensus 342 ~~ 343 (434)
++
T Consensus 309 ~~ 310 (902)
T 2oaj_A 309 DL 310 (902)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.3e-30 Score=237.83 Aligned_cols=262 Identities=14% Similarity=0.152 Sum_probs=213.3
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
+.+|+..+..++..+.+|.. +.+++|+|++..++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+++
T Consensus 14 v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 14 ISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp EEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEE
Confidence 45667667777778887754 89999999993344788899999999999999988887554 99999999999987654
Q ss_pred -eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEE-EEeC--CeEEEEeCCCCcceeeeecCC
Q 013873 128 -GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF-ATAG--AQVDIWNHNRSQPINSFQWGT 203 (434)
Q Consensus 128 -~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (434)
+.++.|++||+.+++ ..........+.+++++|++..+ ++++ +.|.+||+.+++.+..+..+
T Consensus 92 ~~~~~~v~v~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNT-------------VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp ETTTTEEEEEETTTTE-------------EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred ECCCCEEEEEECCCCe-------------EEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 467999999998763 34445556678999999999976 4554 57999999999988888765
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
..+.+++|+|++..++++++.++.|++||+++......+ .+...+.+++|+|+|
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--------------------------KVEAAPSGIAVNPEG 211 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--------------------------ECSSEEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--------------------------ecCCCccceEECCCC
Confidence 456999999999666678889999999999876544332 345678999999999
Q ss_pred CEEEEEe---CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEE-EEeeCCCcEEEeecCcccccccCC
Q 013873 284 REFVTGS---YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV-ISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 284 ~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
++|++++ .++.|++||+.+++....+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+.
T Consensus 212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp SEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 9999888 6899999999999887777654 458899999999987 567889999999999998877664
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=230.38 Aligned_cols=263 Identities=14% Similarity=0.230 Sum_probs=206.8
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
+++|+||++ ++||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+.+++..
T Consensus 28 ~~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~-- 102 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-- 102 (318)
T ss_dssp CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--
T ss_pred ceEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--
Confidence 578999987 4677664 9999999999999887664 67788999999999999999999999999999877432
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC-cceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
.....+...+.+ +++++.++++++ +.+.+|+.... ..+..+..|...+..+.+.+++ .+|++++
T Consensus 103 ----------~~~~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~ 169 (318)
T 4ggc_A 103 ----------RNMTSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGG 169 (318)
T ss_dssp ----------EEEECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred ----------EEecCccceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEe
Confidence 222223334443 445566777765 56888988765 4567778899999999999988 7899999
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE---EEEEeCCCcEEEEeC
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE---FVTGSYDRTIRIFQY 300 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~---l~~~~~d~~i~iwd~ 300 (434)
.||.|++||+++....... ......|.+.|.+++++|++.. +++++.++.|++||.
T Consensus 170 ~d~~i~iwd~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVP---------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp TTSCEEEEESSCBTTBSCC---------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred cCcceeEEECCCCcccccc---------------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 9999999999876543221 1233467889999999997654 346678899999999
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCCCCEEEEee--CCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhh
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKR 378 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 378 (434)
............ ..+..+.|+|++..+++++ .||.|++||+.+++++..+. +|...|.+
T Consensus 229 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-----------------gH~~~V~~ 289 (318)
T 4ggc_A 229 CSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLS 289 (318)
T ss_dssp TTCCEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------------CCSSCEEE
T ss_pred ccccccccccce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-----------------CCCCCEEE
Confidence 988776555433 6799999999999887654 79999999999999887764 57888999
Q ss_pred hhhccCCChHH
Q 013873 379 IVRHRHLPKPI 389 (434)
Q Consensus 379 ~~~~~~~~~~~ 389 (434)
++|+|....++
T Consensus 290 l~~spdg~~l~ 300 (318)
T 4ggc_A 290 LTMSPDGATVA 300 (318)
T ss_dssp EEECTTSSCEE
T ss_pred EEEcCCCCEEE
Confidence 99999766543
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-30 Score=233.44 Aligned_cols=255 Identities=17% Similarity=0.294 Sum_probs=216.9
Q ss_pred eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE
Q 013873 101 TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (434)
Q Consensus 101 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
....+.+|.+.|++++|+|++++|++++.||.|++||+.++.. ......+...+.+++|+|++.++++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER------------LGTLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE------------EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh------------hhhhhhcCCcEEEEEEcCCCCEEEE
Confidence 3456889999999999999999999999999999999987632 2223346778999999999999988
Q ss_pred eC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC-----CcEEEEEccCCCc---------------
Q 013873 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDLRMSSP--------------- 238 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--------------- 238 (434)
++ +.|++||+.+++.+..+. +...+.+++|+|++ .+|++++.+ |.|.+||+.....
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 76 679999999999988888 78899999999988 788888888 9999999986642
Q ss_pred ----------------ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 239 ----------------ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 239 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
.....+.+..++.+.+||.+........+..|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 1224455778899999999886777778888999999999999999999999999999999999
Q ss_pred CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC--------------cEEEeecCcccccccCChhhhhhhHHHHHHHH
Q 013873 303 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT--------------NLRLWKAKASEQLGVLHPREQRKHAYHEAVKN 368 (434)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
++....+. +...+.+++|+|+++++++++.++ .+++||+.+++.+..+.
T Consensus 250 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------------- 312 (369)
T 3zwl_B 250 LQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--------------- 312 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE---------------
T ss_pred Cceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee---------------
Confidence 98887776 337899999999999999999988 89999999988876553
Q ss_pred hhccchhhhhhhhccCCChH
Q 013873 369 RYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~ 388 (434)
.|...|.+++|+|....+
T Consensus 313 --~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 313 --GHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp --CCSSCEEEEEECTTSSEE
T ss_pred --cccCcEEEEEECCCCCEE
Confidence 567788889998876643
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-31 Score=244.16 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=173.2
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-----EEeeccCCCeeEEEEcC--------CCCeEEEeeCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-----CQYSGHQGAVRGLTVST--------DGRILVSCGTD 130 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~~~--------~~~~l~s~~~d 130 (434)
.|...+....+.+++ .+|++|+.|++|+|||+.++... ..+.+|.+.|++++|+| ++++|++|+.|
T Consensus 87 ~~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ----------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred ccCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 344444445555555 78999999999999999887653 23678999999999997 78899999999
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceee---------
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINS--------- 198 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~--------- 198 (434)
++|+|||+.++ ........+...+.+++|+|++. ++++++ +.|++||+.+++....
T Consensus 166 ~tv~~Wd~~~~------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 166 CTLIIWRLTDE------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp SEEEEEEEETT------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CeEEEEECCCC------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 99999999765 34556677888999999999875 677665 6799999988754322
Q ss_pred ----------------eecCCCceEEEEEc-CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 199 ----------------FQWGTDTVISVRFN-PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 199 ----------------~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
..+|...+.++.|. |++ ..+++++.|+.+++||+........+...... .+... ..
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~-~~ 306 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKN-LL 306 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC------------------------C-CS
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEE-Ec
Confidence 13456778899987 555 88999999999999999877654443211110 00000 01
Q ss_pred cceeeeeCcccCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEE
Q 013873 262 EAKCVHMGHESAVMDIDYSP--TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLR 339 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 339 (434)
........+...+ ...|+| ++.++++|+.||.|++||+.++........++ .+|.+++|+|||++||+++.+| +.
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~-~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 307 PNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG-MPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp CSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS-SCEEEEEECTTSSEEEEEESSE-EE
T ss_pred cccccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC-CcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 1111112222233 334444 34467778889999999999998877765555 7899999999999999998765 66
Q ss_pred EeecC
Q 013873 340 LWKAK 344 (434)
Q Consensus 340 vw~~~ 344 (434)
+|++.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 66654
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-31 Score=239.99 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=184.0
Q ss_pred EeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCC
Q 013873 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDN 152 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 152 (434)
.+.+++ .+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...........
T Consensus 43 ~~~~d~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~---- 112 (343)
T 3lrv_A 43 SMYYDK-WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK---- 112 (343)
T ss_dssp SSSEEE-EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT----
T ss_pred hhcCCC-CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC----
Confidence 344566 899999999999999999999888876 567888899988 9999999999999876432110000
Q ss_pred CCCceeEE--EecCceEEEeecc--CCCEEEEeC--CeEEEEeCCCCcceeeeec-CCCceEEEEEcCCCCcEEEEEecC
Q 013873 153 SSEPLAVY--VWKNSFWAVDHQW--EGDLFATAG--AQVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASD 225 (434)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~d 225 (434)
........ .+...+.+++++| ++.++++++ +.|++||+.+++.+..... +...+.+++|+|++ .+|++|+.|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~d 191 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPD 191 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTT
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCC
Confidence 01112222 2336799999999 999998876 6799999999988766543 45579999999988 899999999
Q ss_pred CcEEEEEccCCCcc-eEEEeeecCceeEEEeeCCCCccceeeeeC-cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 226 RSITLYDLRMSSPA-RKVIMRANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 226 g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
|.|++||+++.... ..+ .. |..+|++++|+|+|.+|++++ |+.|++||++++
T Consensus 192 g~i~iwd~~~~~~~~~~~-------------------------~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRF-------------------------PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp SCEEEEESSCTTSCCEEC-------------------------CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred CEEEEEECCCCCCCccEE-------------------------eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 99999999987654 222 34 899999999999999999999 559999999988
Q ss_pred eeeeEEec--cCCccE--EEEEEcCCCCEEEEeeC-CCcEEEeecCccc
Q 013873 304 RSREIYHT--KRMQRV--FCVKFSCDASYVISGSD-DTNLRLWKAKASE 347 (434)
Q Consensus 304 ~~~~~~~~--~~~~~v--~~~~~s~~~~~l~s~~~-dg~v~vw~~~~~~ 347 (434)
.....+.. .+...+ .+++|+|+|++|++++. |+.|++|++....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 76544322 111223 46999999999999988 9999999997654
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=6.7e-32 Score=238.57 Aligned_cols=238 Identities=15% Similarity=0.176 Sum_probs=181.5
Q ss_pred CChhhhhhhHHHHHHHHhhhhcccc--ccccccCCCCCeEEEEeCCC--CCceEEeeeCCCcEEEEeCCCCc--eeEEee
Q 013873 33 RPQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQYS 106 (434)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~ 106 (434)
.|.............+++|++.... ++..+.+|.+.|++++|+|+ + .+|++|+.|++|++||+.++. ....+.
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence 3444444444445567788876543 56789999999999999864 5 899999999999999998873 566788
Q ss_pred ccCCCeeEEEEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC----------
Q 013873 107 GHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE---------- 174 (434)
Q Consensus 107 ~h~~~v~~i~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 174 (434)
+|...|.+++|+|+ +.+|++|+.||+|++||+......... .....+...+.++.|+|+
T Consensus 101 ~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 101 GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK---------KINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC---------CBTTSSSSCBCCCEECCCCCC------C
T ss_pred CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee---------eeeccccCCcceEEEccccCCccccccc
Confidence 99999999999997 789999999999999999765211000 000112345566677765
Q ss_pred -------CCEEEEeC--CeEEEEeCCCC---cceeeeecCCCceEEEEEcCCC---CcEEEEEecCCcEEEEEccCCCcc
Q 013873 175 -------GDLFATAG--AQVDIWNHNRS---QPINSFQWGTDTVISVRFNPAE---PNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 175 -------~~~~~~~~--~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
+.++++++ +.|++||+... +.+..+.+|...|.+++|+|++ ..+|++++.||+|++||+......
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 251 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence 46788776 56999999755 4667788999999999999985 368999999999999998763210
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
. .....+..|...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 252 ~---------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 252 T---------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp C---------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred c---------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0 0001223678899999999999999999999999999975
No 105
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=3.8e-30 Score=235.94 Aligned_cols=283 Identities=15% Similarity=0.125 Sum_probs=196.9
Q ss_pred HHHHHHHhhhhccccccccc-------------cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccC
Q 013873 43 RALTAAKLEKIFARPFIGAL-------------DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ 109 (434)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l-------------~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 109 (434)
...+.+++|++........+ .+|...|.+++|+|++..+|++|+.||.|++||+.+++....+. +.
T Consensus 63 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 141 (408)
T 4a11_B 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FE 141 (408)
T ss_dssp ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CC
Confidence 33445677777665555444 36999999999999544899999999999999999999888877 78
Q ss_pred CCeeEEEEcCC---CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--C
Q 013873 110 GAVRGLTVSTD---GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--A 183 (434)
Q Consensus 110 ~~v~~i~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~ 183 (434)
..+.++.|++. +.++++++.||.|++||+.++.. ......+...+.+++++|++. ++++++ +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------------SHILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------------CEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 89999999984 44999999999999999987642 223334667899999999998 466664 6
Q ss_pred eEEEEeCCCCc-ceeee---------------ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce-------
Q 013873 184 QVDIWNHNRSQ-PINSF---------------QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR------- 240 (434)
Q Consensus 184 ~i~i~d~~~~~-~~~~~---------------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------- 240 (434)
.|++||++.+. .+..+ ..|...|.+++|+|++ .+|++++.||.|++||+++.....
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 288 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVC 288 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceecccccc
Confidence 79999998765 33333 5678899999999988 789999999999999998765332
Q ss_pred ----------------EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 241 ----------------KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 241 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
........++.+.+|+.... .....+.+|...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 12333456788999998764 4455667899999999999999999999999999999999887
Q ss_pred eeeEEeccCCccEEEEEEcC-CCCEEEEeeCCCcEEEeecC
Q 013873 305 SREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~ 344 (434)
......... ....+.+ +...+.+++.++.+++|+..
T Consensus 368 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 368 PVPDDDETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------------------------
T ss_pred ccCCCCceE----eccccccccceeecccCccCceeecCCc
Confidence 765443221 1223333 33345567789999999865
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3e-30 Score=239.66 Aligned_cols=272 Identities=9% Similarity=-0.011 Sum_probs=200.5
Q ss_pred cccCCCCCeEEEEeCCCCCceE-EeeeCCCcEEEEeCC--CCceeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 61 ALDGHRDGISCMAKNPNYLKGF-FSGSMDGDIRLWDIA--NRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l-~sg~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
.+.+|.+.|++++|+|++ .+| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++
T Consensus 97 ~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ---CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 346789999999999999 665 899999999999999 888888776 56789999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC---CCEEEEeC--CeEEEEeCCCCcceee-eecCCCceEEE
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE---GDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISV 209 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~i 209 (434)
|++.++..... .......+...+.+++|+|+ +.++++++ +.|++||+.+++.+.. +.+|...|.++
T Consensus 176 ~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 176 IDINSIPEEKF--------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp EETTSCCCSSC--------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred EecCCcccccc--------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence 99987653210 11123456778999999999 88888876 5699999999988877 55889999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+|+ ++ .+|++++.|+.|++||++++.....+.........+.....................|.+++|+|++++|+++
T Consensus 248 ~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 248 CCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp EEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred EEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 999 66 8999999999999999998876655432110000000000000000000001335679999999999999999
Q ss_pred e-CCCcEEEEeC--CCC---eeeeEEeccCCccEEEEEEcCCCCEEEEeeC------CCcEEEeecCc
Q 013873 290 S-YDRTIRIFQY--NGG---RSREIYHTKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAKA 345 (434)
Q Consensus 290 ~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~ 345 (434)
+ .|+.|++||+ ..+ .....+..+ ..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9 8999999999 555 444444443 78999999996544444443 45689998754
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=5.7e-30 Score=236.84 Aligned_cols=256 Identities=9% Similarity=0.085 Sum_probs=211.0
Q ss_pred HHHhhhhccccccc-----cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCC
Q 013873 47 AAKLEKIFARPFIG-----ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121 (434)
Q Consensus 47 ~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 121 (434)
.+.+|+..++..+. .+.+|...|.+++|+|++ .++++++.|+.|++||+.+++.+..+..|...+.+++|+|++
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT
T ss_pred eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC
Confidence 36677776666665 567899999999999998 899999999999999999999999998999999999999999
Q ss_pred CeEEEe-eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----------CeEEEEeC
Q 013873 122 RILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----------AQVDIWNH 190 (434)
Q Consensus 122 ~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~i~d~ 190 (434)
++++++ +.|+.|++||+.++.. .........+.+++++|++..+++++ +.|.+||+
T Consensus 224 ~~l~~~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 224 DLVYCSNWISEDISVIDRKTKLE-------------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEE-------------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CEEEEEecCCCcEEEEECCCCcE-------------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 988554 4799999999976643 22223344578999999998877654 46999999
Q ss_pred CCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCc
Q 013873 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGH 270 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (434)
.+++.+..+. +...+.+++|+|++..++++++.|+.|++||+.+......+ .+
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--------------------------~~ 343 (433)
T 3bws_A 291 DKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--------------------------PV 343 (433)
T ss_dssp TTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--------------------------EC
T ss_pred CCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--------------------------cC
Confidence 9988776653 35578899999999778888899999999999876544332 35
Q ss_pred ccCeEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC-
Q 013873 271 ESAVMDIDYSPTGREFVTGSY---------------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD- 334 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~- 334 (434)
...+.+++|+|+|+++++++. ||.|++||+.+++....+..+ ..+.+++|+|+|++|++++.
T Consensus 344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCCCEEEEEECC
Confidence 667899999999999888876 579999999999887777553 57899999999999988775
Q ss_pred CCcEEEeecCc
Q 013873 335 DTNLRLWKAKA 345 (434)
Q Consensus 335 dg~v~vw~~~~ 345 (434)
||.|++|++..
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999863
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=3.3e-31 Score=244.99 Aligned_cols=251 Identities=20% Similarity=0.158 Sum_probs=187.7
Q ss_pred hHHHHHHHHhhhhcccc--ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--ccCCCeeEEE
Q 013873 41 YVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLT 116 (434)
Q Consensus 41 ~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~i~ 116 (434)
.......+++|++.... .+..+.+|.+.|++|+|+|.++.+|++|+.||+|++||++++....... .+...+.+++
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence 33445567788876544 4456789999999999998544899999999999999998765433333 2345678999
Q ss_pred EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC-EEEEeC--CeEEEEeCCCC
Q 013873 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRS 193 (434)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~ 193 (434)
|+|++.+|++|+.||.|++||++.... .....+...+.+++|+|++. ++++++ +.|++||+++.
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~-------------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMDGKEL-------------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESSSCBC-------------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred ECCCCCEEEEEeCCCcEeeeccCccee-------------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 999999999999999999999864422 11223567899999999886 565654 67999999887
Q ss_pred cceee---eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEE-------------------------ee
Q 013873 194 QPINS---FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-------------------------MR 245 (434)
Q Consensus 194 ~~~~~---~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------~~ 245 (434)
+.... ...|...|.+++|+|++ .+|++++.||.|++||++.......+. ..
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred cccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 65433 35688999999999998 799999999999999998764432221 11
Q ss_pred -----------ecCceeEEEeeCCCCccceeeeeCcccCeEEE-EEccCCCEEEEEeCCCcEEEEeCCCCeee
Q 013873 246 -----------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI-DYSPTGREFVTGSYDRTIRIFQYNGGRSR 306 (434)
Q Consensus 246 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 306 (434)
+..+..+.+|+............+|...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 11234577888776655555566888889887 6999999999876 889999999988653
No 109
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=1.5e-30 Score=235.01 Aligned_cols=238 Identities=18% Similarity=0.275 Sum_probs=197.7
Q ss_pred HHHhhhhccccccccccC-----CCCCeEEEEeCCC----CCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEE
Q 013873 47 AAKLEKIFARPFIGALDG-----HRDGISCMAKNPN----YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~-----h~~~V~~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 117 (434)
.+.+|+..+...+..+.. |...|++++|+|+ + .+|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH-PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC-EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC-CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 466777766666666654 5678999999999 5 69999999999999999999999999999999999999
Q ss_pred cC-CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE----EecCceEEEeeccCCCEEEEeC--CeEEEEeC
Q 013873 118 ST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY----VWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (434)
Q Consensus 118 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (434)
+| ++.+|++++.||.|++||+.++.. .... .+...+.+++|+|++..+++++ +.|++||+
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTL-------------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEE-------------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeE-------------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEEC
Confidence 99 899999999999999999986632 2222 3567899999999999998886 67999999
Q ss_pred CCCcceeeeec----------------------------CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc----
Q 013873 191 NRSQPINSFQW----------------------------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP---- 238 (434)
Q Consensus 191 ~~~~~~~~~~~----------------------------~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---- 238 (434)
.+++....+.. |...|.+++|+ + .+|++++.||.|++||++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccc
Confidence 98766554443 88999999998 3 6899999999999999876533
Q ss_pred ----------------------------c--eEEEeeecCceeEEEeeCCCCcc---ceeeeeCc--ccCeEEEEEccCC
Q 013873 239 ----------------------------A--RKVIMRANEDCNCYSYDSRKLDE---AKCVHMGH--ESAVMDIDYSPTG 283 (434)
Q Consensus 239 ----------------------------~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~i~~~~~sp~~ 283 (434)
. ..++..+..++.+.+|+...... ....+.+| ...|++++|+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 1 44566688899999999877543 33345566 7999999999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 013873 284 REFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~ 301 (434)
++|++++.||.|++||+.
T Consensus 348 ~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CeEEEEeCCCEEEEEEec
Confidence 999999999999999985
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-30 Score=237.33 Aligned_cols=236 Identities=8% Similarity=0.043 Sum_probs=184.4
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEE-----------------E----------EeCCCCceeEEee-ccCCCeeE
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIR-----------------L----------WDIANRRTVCQYS-GHQGAVRG 114 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~-----------------i----------wd~~~~~~~~~~~-~h~~~v~~ 114 (434)
+.-...|.+++|+||| .++|+++.|++|+ + |++.+++....+. .|...|.+
T Consensus 12 ~~~~~~v~sv~~SpDG-~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~ 90 (588)
T 2j04_A 12 KEFEDWKNNLTWARDG-TLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV 90 (588)
T ss_dssp CCCSSSSCCEEECTTS-CEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred hHhhccEEEEEECCCC-CEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence 4456899999999999 9999999999984 1 2222222111222 45788999
Q ss_pred EEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC-----ceEEEeeccCCCEEEEeC--CeEEE
Q 013873 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN-----SFWAVDHQWEGDLFATAG--AQVDI 187 (434)
Q Consensus 115 i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~i~i 187 (434)
++|+|+|++||+++.||.|++||... ......+.. .+.+++|+|+|.++++++ |.|++
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~---------------~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK---------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE---------------EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc---------------eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 99999999999999999999999532 111112222 488999999999999987 67999
Q ss_pred EeCCCCcc-------eeee----ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 188 WNHNRSQP-------INSF----QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 188 ~d~~~~~~-------~~~~----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
||+..+.. +..+ .+|...|.+++|+|++ +++++.|+.|++||+.......
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~---------------- 216 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP---------------- 216 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC----------------
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc----------------
Confidence 99998753 4665 5577899999999987 7889999999999997765321
Q ss_pred CCCCccceeee-eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEE--cCCCCEEEEee
Q 013873 257 SRKLDEAKCVH-MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGS 333 (434)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~ 333 (434)
....+ .+|...|.+++|+ |+.||+++ ++.|++||+.+++...... +|...|.+++| +||+..|++++
T Consensus 217 ------~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 217 ------VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp ------CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECS
T ss_pred ------ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEc
Confidence 00112 3688899999999 68999987 7999999999887744443 46689999999 99999999999
Q ss_pred CCCcEEEeecC
Q 013873 334 DDTNLRLWKAK 344 (434)
Q Consensus 334 ~dg~v~vw~~~ 344 (434)
.||. ++|..+
T Consensus 287 edG~-klw~~d 296 (588)
T 2j04_A 287 KTSY-KVLLED 296 (588)
T ss_dssp SCEE-EEEESS
T ss_pred CCCC-EEEeec
Confidence 9999 999986
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=230.37 Aligned_cols=271 Identities=15% Similarity=0.171 Sum_probs=212.5
Q ss_pred EEEeCCCCceeEEeeccCCCeeEEEEcCC---CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEE
Q 013873 92 RLWDIANRRTVCQYSGHQGAVRGLTVSTD---GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWA 168 (434)
Q Consensus 92 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (434)
..|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+... ........+...+.+
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQMHTGPVLD 91 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEECSSCEEE
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEeccccCCEEE
Confidence 34455666777888999999999999998 59999999999999999986311 112345567889999
Q ss_pred EeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEE--cCCCCcEEEEEecCCcEEEEEccCCCcceEEE-
Q 013873 169 VDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRF--NPAEPNVLATTASDRSITLYDLRMSSPARKVI- 243 (434)
Q Consensus 169 ~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 243 (434)
++|+|++.++++++ +.|++||+.+++.+. +..|...|.+++| +|++ .+|++++.||.|++||+++......+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 99999999998876 679999999988766 5568999999999 8877 789999999999999999887665543
Q ss_pred --------------eeecCceeEEEeeCCCCccceeee-eCcccCeEEEEEccCCCE----EEEEeCCCcEEEEeCCCC-
Q 013873 244 --------------MRANEDCNCYSYDSRKLDEAKCVH-MGHESAVMDIDYSPTGRE----FVTGSYDRTIRIFQYNGG- 303 (434)
Q Consensus 244 --------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~----l~~~~~d~~i~iwd~~~~- 303 (434)
..+..++.+.+|+........... ..+...+.++++.+++.. +++++.||.|++||+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 335567778888887654433222 234456667777666554 999999999999999887
Q ss_pred --eeeeEEeccCC-----------ccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhh
Q 013873 304 --RSREIYHTKRM-----------QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRY 370 (434)
Q Consensus 304 --~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
.....+..+.. ..|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------- 312 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE----------------- 312 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----------------
T ss_pred ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-----------------
Confidence 33444443321 169999999999999999999999999999998887664
Q ss_pred ccchhhhhhhhccCCChHHHH
Q 013873 371 KHLPEIKRIVRHRHLPKPIYK 391 (434)
Q Consensus 371 ~~~~~v~~~~~~~~~~~~~~~ 391 (434)
.|...|.+++|+|....++..
T Consensus 313 ~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp CCSSCEEEEEECTTSSCEEEE
T ss_pred CCCCCceEEEECCCCCeEEEE
Confidence 467788999999988766544
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.5e-29 Score=231.98 Aligned_cols=315 Identities=14% Similarity=0.177 Sum_probs=219.7
Q ss_pred HHHhhhhccccccccccCC--CCCeEEEEeCCCCC---------ceEEeeeC----CCcEEEEeCC--------------
Q 013873 47 AAKLEKIFARPFIGALDGH--RDGISCMAKNPNYL---------KGFFSGSM----DGDIRLWDIA-------------- 97 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h--~~~V~~~~~~~~~~---------~~l~sg~~----dg~i~iwd~~-------------- 97 (434)
.-++|+-...-+...+..| .-+..++.|.|+.. .+|+.|+. .+.|.++++.
T Consensus 24 ~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d 103 (430)
T 2xyi_A 24 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYD 103 (430)
T ss_dssp HHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC------------
T ss_pred HHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccc
Confidence 3456665544333333333 24678999999752 45777764 3457777542
Q ss_pred ------------CCce-eEEeeccCCCeeEEEEcCC-CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEec
Q 013873 98 ------------NRRT-VCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK 163 (434)
Q Consensus 98 ------------~~~~-~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (434)
+++. ......|.+.|++++|+|+ +.+|++++.||.|++|++........ .............+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~ 181 (430)
T 2xyi_A 104 NEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQ 181 (430)
T ss_dssp --------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCS
T ss_pred ccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCC
Confidence 1111 2334579999999999997 67999999999999999975321111 000112334445667
Q ss_pred CceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcc-------eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 164 NSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQP-------INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
..+.+++|+|++. ++++++ +.|.+||+..+.. ...+..|...|.+++|+|++..+|++++.||.|++||+
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 7899999999988 888876 6799999987432 45566789999999999977689999999999999999
Q ss_pred cCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-eeeeEEec
Q 013873 234 RMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGG-RSREIYHT 311 (434)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~ 311 (434)
+..... .....+..|...|++++|+|++. +|++|+.||.|++||++.. ..+..+..
T Consensus 262 ~~~~~~----------------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 262 RNNNTS----------------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp TCSCSS----------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred CCCCCC----------------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 876311 11122347899999999999987 6889999999999999984 44555544
Q ss_pred cCCccEEEEEEcCCCC-EEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 312 KRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 312 ~~~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
|...|++++|+|++. +|++++.||.|+|||+................ ...+....+|...|+.++|+|..+..+
T Consensus 320 -h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 320 -HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP---PELLFIHGGHTAKISDFSWNPNEPWII 394 (430)
T ss_dssp -CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC---TTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred -CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC---cceEEEcCCCCCCceEEEECCCCCCEE
Confidence 458899999999985 79999999999999998743221100000000 000111235677899999999988443
No 113
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=230.24 Aligned_cols=229 Identities=17% Similarity=0.234 Sum_probs=189.7
Q ss_pred HHHHHhhhhc--cccccccccCCCCCeEEEEeCCC--CCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEc
Q 013873 45 LTAAKLEKIF--ARPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVS 118 (434)
Q Consensus 45 ~~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~ 118 (434)
...+++|++. ....+..+.+|...|++++|+++ + .+|++|+.||.|++||+.+++ .+..+..|...|.+++|+
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 110 (379)
T 3jrp_A 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 110 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC
Confidence 4456777776 56677889999999999999987 7 899999999999999999987 677788899999999999
Q ss_pred CC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-------------CCCEEEEeC-
Q 013873 119 TD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-------------EGDLFATAG- 182 (434)
Q Consensus 119 ~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~- 182 (434)
|+ +.+|++++.||.|++||+..... ........+...+.+++|+| ++.++++++
T Consensus 111 ~~~~~~~l~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 111 PHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp CGGGCSEEEEEETTSEEEEEECCTTSC----------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred CCCCCCEEEEecCCCcEEEEecCCCCc----------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 99 99999999999999999987632 23334455677899999999 688888876
Q ss_pred -CeEEEEeCCCCc----ceeeeecCCCceEEEEEcCCC--CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 183 -AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 183 -~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
+.|++||++.+. ....+..|...|.+++|+|++ +.+|++++.||.|++||++..........
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 249 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL----------- 249 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE-----------
T ss_pred CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee-----------
Confidence 679999998765 345677789999999999993 48999999999999999987653322110
Q ss_pred eCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 256 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
.....|...|++++|+|+|++|++++.||.|++||+..+.
T Consensus 250 ---------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 250 ---------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ---------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred ---------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 1112488899999999999999999999999999998543
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-30 Score=230.71 Aligned_cols=255 Identities=10% Similarity=0.077 Sum_probs=196.0
Q ss_pred HHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC---------CCceeEEee-ccCCC
Q 013873 42 VRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA---------NRRTVCQYS-GHQGA 111 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~---------~~~~~~~~~-~h~~~ 111 (434)
......+++|++.++..+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+. +|.+.
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANE 127 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSC
T ss_pred ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCC
Confidence 3344557788887777777666 577888889886 8999999999999765 444444443 67789
Q ss_pred eeEEEEcC--CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE--EecCceEEEeeccCCCEEEEeC--CeE
Q 013873 112 VRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFATAG--AQV 185 (434)
Q Consensus 112 v~~i~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (434)
|.+++|+| ++++|++++.||+|++||+.++.. .... .+...+.+++++|++.++++++ +.|
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCE-------------EEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-------------EEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 99999999 999999999999999999987642 2211 2334688999999999999876 679
Q ss_pred EEEeCCCCcce-eeeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccc
Q 013873 186 DIWNHNRSQPI-NSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEA 263 (434)
Q Consensus 186 ~i~d~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
++||+++++.+ ..+.. |...|.+++|+|++ .+|++++ |+.|++||++.......+.
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~-------------------- 252 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYP-------------------- 252 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSC--------------------
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeec--------------------
Confidence 99999999887 77887 99999999999988 7888888 5599999999876544321
Q ss_pred eeeeeCcccCe--EEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC---CCCEEEEeeCCCc
Q 013873 264 KCVHMGHESAV--MDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC---DASYVISGSDDTN 337 (434)
Q Consensus 264 ~~~~~~~~~~i--~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~ 337 (434)
.+..|...+ .+++|+|+|++|++++. |+.|++|++......... .++..++|.+ +...+++++.||.
T Consensus 253 --~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~ 325 (343)
T 3lrv_A 253 --TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGG 325 (343)
T ss_dssp --CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTE
T ss_pred --ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCc
Confidence 011122333 46999999999999998 999999999765433222 4678889998 8899999999999
Q ss_pred EEEeecC
Q 013873 338 LRLWKAK 344 (434)
Q Consensus 338 v~vw~~~ 344 (434)
+.++-..
T Consensus 326 ~~~~~~~ 332 (343)
T 3lrv_A 326 IAAILKT 332 (343)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9988543
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.5e-30 Score=228.71 Aligned_cols=263 Identities=13% Similarity=0.148 Sum_probs=191.5
Q ss_pred HHHHHhhhhccc----cccccccCCCCCeEEEEeCC--CCCceEEeeeCCCcEEEEeCCCC---------ceeEEeeccC
Q 013873 45 LTAAKLEKIFAR----PFIGALDGHRDGISCMAKNP--NYLKGFFSGSMDGDIRLWDIANR---------RTVCQYSGHQ 109 (434)
Q Consensus 45 ~~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~~~--~~~~~l~sg~~dg~i~iwd~~~~---------~~~~~~~~h~ 109 (434)
...+++|++... .++..+.+|...|++++|+| ++ .+|++|+.||.|++||+.++ +.+..+..|.
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 32 DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 345667776544 46777899999999999999 46 89999999999999999887 5577788999
Q ss_pred CCeeEEEEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCC-CCceeEEEecCceEEEeeccC---CCEEEEeC-
Q 013873 110 GAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS-SEPLAVYVWKNSFWAVDHQWE---GDLFATAG- 182 (434)
Q Consensus 110 ~~v~~i~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~- 182 (434)
..|.+++|+|+ +.+|++++.||.|++||+.++............ ........+...+.+++++|+ +..+++++
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 99999999999 999999999999999999887654332210000 000001124557889999997 88888776
Q ss_pred -CeEEEEeCCCCcc--eeeeecCCCceEEEEEcCCCC---cEEEEEecCCcEEEEEccCCCcceEEEee-----------
Q 013873 183 -AQVDIWNHNRSQP--INSFQWGTDTVISVRFNPAEP---NVLATTASDRSITLYDLRMSSPARKVIMR----------- 245 (434)
Q Consensus 183 -~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------- 245 (434)
+.+.+|+...++. +..+..|...|.+++|+|++. .+|++|+.||.|++||++...........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
T 3f3f_A 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA 270 (351)
T ss_dssp TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence 3477777666654 677778999999999999874 68999999999999999875332211000
Q ss_pred -----------ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 246 -----------ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 246 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
.........++. ........+.+|...|++++|+|++++|++|+.||.|++||+.++.....+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 271 DVDMDAQGRSDSNTEEKAELQSN-LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --------------------CCS-EEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccccccccccccceeeeeccc-ccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 000000011110 112344456689999999999999999999999999999999987655444
No 116
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.4e-29 Score=229.95 Aligned_cols=274 Identities=13% Similarity=0.198 Sum_probs=209.1
Q ss_pred eEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC----C--
Q 013873 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE----G-- 175 (434)
Q Consensus 102 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 175 (434)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.+...... .........+...+.+++|+++ +
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCCcc
Confidence 455678999999999998 7999999999999999987642110 0123344456778999999999 8
Q ss_pred -CEEEEeC--CeEEEEeCCCCcc-----eeeeecC-----CCceEEEEEc----CCCCcE-EEEEecCCcEEEEEccC--
Q 013873 176 -DLFATAG--AQVDIWNHNRSQP-----INSFQWG-----TDTVISVRFN----PAEPNV-LATTASDRSITLYDLRM-- 235 (434)
Q Consensus 176 -~~~~~~~--~~i~i~d~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~~-l~~~~~dg~i~iwd~~~-- 235 (434)
.++++++ +.|++||+.+++. +..+..| ...|.+++|+ |++ .+ |++++.||.|++||++.
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccc
Confidence 8888775 6799999999887 8888888 5899999999 888 67 99999999999999987
Q ss_pred ----CCcce-----E------------------------EEeeecCceeEEEeeCCCCccceeeeeC---c---ccCeEE
Q 013873 236 ----SSPAR-----K------------------------VIMRANEDCNCYSYDSRKLDEAKCVHMG---H---ESAVMD 276 (434)
Q Consensus 236 ----~~~~~-----~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~ 276 (434)
..... . ..+.+..++.+.+||.+.. .....+.. | ...|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccce
Confidence 43332 2 3344667888999998764 34455566 8 999999
Q ss_pred EEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEEecc------------CCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 277 IDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTK------------RMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
++|+|++++|++++.| |.|++||+.+++....+... +...|.+++|+|++++|++++.||.|++|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999 99999999999888777651 45889999999999999999999999999
Q ss_pred ecCcccccccCChhhhhhhHHHHHH----HHhhccchhhhhhhhccCC
Q 013873 342 KAKASEQLGVLHPREQRKHAYHEAV----KNRYKHLPEIKRIVRHRHL 385 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~ 385 (434)
|+.+++.+..+.............. .....|...|..++|+|..
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 9999988877751100000000000 0000127788999999885
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.6e-29 Score=216.87 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=153.8
Q ss_pred HHhhhhccc---cccccccCCCC-------------------------CeEEEEeCCC----CCceEEeeeCCCcEEEEe
Q 013873 48 AKLEKIFAR---PFIGALDGHRD-------------------------GISCMAKNPN----YLKGFFSGSMDGDIRLWD 95 (434)
Q Consensus 48 ~~~~~~~~~---~~~~~l~~h~~-------------------------~V~~~~~~~~----~~~~l~sg~~dg~i~iwd 95 (434)
+++|+.... +.++++.+|.. .|.+++|+|+ + .++++++. .+.+|+
T Consensus 65 v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~-~~l~s~g~--~~~v~~ 141 (356)
T 2w18_A 65 VSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEK-QVLLKSGN--IKAVLG 141 (356)
T ss_dssp EEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CC-EEEEEEEE--EEEEEE
T ss_pred EEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccc-cEEEeCCC--eEEEEe
Confidence 456666555 56677777765 4556666667 6 67777664 366677
Q ss_pred CCCCceeEE-eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-
Q 013873 96 IANRRTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW- 173 (434)
Q Consensus 96 ~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (434)
+.+++.+.. ..+|...|..++|+|+|+.+.+.. .+...+..++|++
T Consensus 142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--------------------------------~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--------------------------------LMPPEETILTFAEV 189 (356)
T ss_dssp ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--------------------------------ECCCSSCEEEEEEE
T ss_pred cCCCcEEEecccCCCCcEEEEEECCCCceeeeec--------------------------------cCCCceeeEEeecc
Confidence 766666665 356777777777777666555321 0111223344444
Q ss_pred --CCCEEEEeC--CeEEEEeCCCCcceeeeecCC---CceEEEEEcCCCCcEE------------EEEecCCcEEEEEcc
Q 013873 174 --EGDLFATAG--AQVDIWNHNRSQPINSFQWGT---DTVISVRFNPAEPNVL------------ATTASDRSITLYDLR 234 (434)
Q Consensus 174 --~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l------------~~~~~dg~i~iwd~~ 234 (434)
++.++++++ ++|+|||+.+++.+..+..|. ..+.+++|+|++ .++ ++|+.|++|++||..
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 556666654 457777777777777776543 356667788876 443 667888999999988
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCC
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 314 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 314 (434)
++.....+... ...+|...+.+..+ ++.++++|+.|++|+|||+.+++++..+..++.
T Consensus 269 tgk~l~v~~~~--------------------~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~ 326 (356)
T 2w18_A 269 TTLSVGVMLYC--------------------LPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD 326 (356)
T ss_dssp TTEEEEEEEEC--------------------CCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred CCEEEEEEEee--------------------ccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC
Confidence 76554322110 01255555544444 488999999999999999999999988876654
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 315 QRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
..+.+++|+|||++|++|+.|++|+|||+
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44557999999999999999999999985
No 118
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-29 Score=219.15 Aligned_cols=248 Identities=18% Similarity=0.274 Sum_probs=200.6
Q ss_pred ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE
Q 013873 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+....+.+|.+.|++++| +++.+|++++.||.|++||+.++. .......+...+.+++++|++.+++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW------------LGTVVYTGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE------------EEEEEEECSSCEEEEEEETTTTEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE------------EEEEeecCCccEEEEEECCCCCEEE
Confidence 667889999999999999 999999999999999999996652 3344556678999999999999999
Q ss_pred EeC--CeEEEEeCCCC---cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC--------Cc--------
Q 013873 180 TAG--AQVDIWNHNRS---QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS--------SP-------- 238 (434)
Q Consensus 180 ~~~--~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~-------- 238 (434)
+++ +.+.+|++... +.+..+..|...|.+++|. + .+|++++.||.|++||.... ..
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE
T ss_pred EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc
Confidence 886 56999998664 5677788899999999994 3 68999999999999993211 00
Q ss_pred -ceEEEeeecCceeEEEeeCCCCccceeeeeC-cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCcc
Q 013873 239 -ARKVIMRANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 316 (434)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 316 (434)
.....+.+..++.+.+||. ......+.. |...+.+++|+|++. +++++.||.|++||+++++....+..+. ..
T Consensus 153 ~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~ 227 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SF 227 (313)
T ss_dssp TTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SC
T ss_pred CCCCEEEEEECCCCEEEEec---CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ce
Confidence 1223445677888889983 233444444 899999999999998 9999999999999999998887776544 88
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
|++++|+|++ .|++++.||.|++||+.+++.+..+. .|...+..++|+|...
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-----------------LPAISIWSVDCMSNGD 279 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-----------------CSSSCEEEEEECTTSC
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-----------------ccCceEEEEEEccCCC
Confidence 9999999999 58899999999999999998776653 3455678888888765
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-29 Score=227.36 Aligned_cols=244 Identities=9% Similarity=0.005 Sum_probs=181.2
Q ss_pred HHhhhhcccccccccc-CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC-----CeeEEEEcCCC
Q 013873 48 AKLEKIFARPFIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG-----AVRGLTVSTDG 121 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~i~~~~~~ 121 (434)
.+.|++........+. +|.+.|.+++|+|+| .+||+++.||.|++||.++ .+..+. |.. .|.+++|+|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 66 ENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred cceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC
Confidence 4445555444333333 568999999999999 9999999999999999644 666666 665 49999999999
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE-----EecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcc
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY-----VWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQP 195 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~ 195 (434)
++|++|+.||+|++||+.++...... -...... .+...|.+++|+|+| +++++. +.+++||+..+..
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~------~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPE------FYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCC------CEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred CEEEEEcCCCEEEEEECCCCcccccc------ceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 99999999999999999876421000 0011221 134589999999999 555444 5699999988774
Q ss_pred e---eee-ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 196 I---NSF-QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 196 ~---~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
. ..+ ..|...|.+++|+ + ..+++++ ++.|++||+....... ...+|.
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~-------------------------~~~gh~ 265 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISS-------------------------LKTGSL 265 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEE-------------------------EECSCC
T ss_pred ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEE-------------------------EEcCCC
Confidence 2 455 3678899999999 4 6788887 6999999987654321 122799
Q ss_pred cCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCe-----------------------eeeEEeccCCccEEEEEEcCCC
Q 013873 272 SAVMDIDY--SPTGREFVTGSYDRTIRIFQYNGGR-----------------------SREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 272 ~~i~~~~~--sp~~~~l~~~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
..|.+++| +|++..|++++.||+ ++|..+.-. ....+. ....|.+++|+|||
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~--~~~~I~~va~SPdG 342 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE--TTLVIHGISLSPDG 342 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC--CEEEEEEEEECTTS
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec--cceEEEEEEECCCC
Confidence 99999999 999999999999999 999874210 011111 12358999999999
Q ss_pred CEEEEeeC
Q 013873 327 SYVISGSD 334 (434)
Q Consensus 327 ~~l~s~~~ 334 (434)
+.+|+++.
T Consensus 343 ~~lA~~~~ 350 (588)
T 2j04_A 343 YSIAIVYD 350 (588)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99998874
No 120
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=227.08 Aligned_cols=248 Identities=15% Similarity=0.205 Sum_probs=191.8
Q ss_pred hhhhhHHHHHHHHhhhhcccc-ccccccCCCCCeEEEE------eCCCCCceEEeeeCCCcEEEEeCCCCc-eeEEeecc
Q 013873 37 KAVEYVRALTAAKLEKIFARP-FIGALDGHRDGISCMA------KNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYSGH 108 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~~~------~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h 108 (434)
...........+++|++.... .+..+.+|...|.+++ |+|++ .+|++|+.||.|++||+.++. .+..+..|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 333334445567888887777 8889999999999995 56787 899999999999999999887 67777665
Q ss_pred CC----CeeEEE----EcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc---CCCE
Q 013873 109 QG----AVRGLT----VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW---EGDL 177 (434)
Q Consensus 109 ~~----~v~~i~----~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 177 (434)
.+ .|.+++ |+|++.+|++++.||.|++||+.++. ......+...+.++.++| ++..
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~ 226 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------------LRWETNIKNGVCSLEFDRKDISMNK 226 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------------EEEEEECSSCEEEEEESCSSSSCCE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------------eeeecCCCCceEEEEcCCCCCCCCE
Confidence 55 899998 68899999999999999999998763 344566778999999999 8898
Q ss_pred EEEeC--CeEEEEeCCCCcceeeee-----cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCce
Q 013873 178 FATAG--AQVDIWNHNRSQPINSFQ-----WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDC 250 (434)
Q Consensus 178 ~~~~~--~~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 250 (434)
+++++ +.|++||+.+++.+..+. .|...|.+++|+|++..+|++++.||.|++||++...........+...+
T Consensus 227 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 88876 679999998887766655 88999999999999855899999999999999987654321100000000
Q ss_pred eEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCe
Q 013873 251 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV-TGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~ 304 (434)
..........+.+|...|++++|+|++++|+ +++.||.|++||+.+..
T Consensus 307 ------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 307 ------VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ------CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ------cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 0000123345568999999999999999998 89999999999998654
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=220.56 Aligned_cols=252 Identities=14% Similarity=0.168 Sum_probs=186.4
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 128 (434)
++|+..+...+... +...+..+++.+++..++++|+.|++|++||+.+++.+..+. |...|.+++|+++. ++++
T Consensus 43 ~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~- 116 (355)
T 3vu4_A 43 EIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS- 116 (355)
T ss_dssp EEEEETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-
T ss_pred EEEecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-
Confidence 46665444433332 233588888888873344678889999999999999998887 67799999998764 4444
Q ss_pred CCCcEEEeeCCCC-CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--C--CeEEEEeCCCCc---------
Q 013873 129 TDCTVKLWNVPVA-TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--G--AQVDIWNHNRSQ--------- 194 (434)
Q Consensus 129 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~i~d~~~~~--------- 194 (434)
.|+.|++||+.+. +..... .. ....+++++ ..++.. + |.|++||+.++.
T Consensus 117 ~~~~i~i~d~~~~~~~~~~~----------~~-----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~ 179 (355)
T 3vu4_A 117 YGDVISVFKFGNPWKRITDD----------IR-----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV 179 (355)
T ss_dssp ETTEEEEEESSTTCCBSSCC----------EE-----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------
T ss_pred EcCEEEEEECCCCceeeEEe----------cc-----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence 4789999999876 332211 11 222344455 455543 2 679999999865
Q ss_pred ------c-eeeeecCCCceEEEEEcCCCCcEEEEEecCCc-EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 195 ------P-INSFQWGTDTVISVRFNPAEPNVLATTASDRS-ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 195 ------~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
+ +..+.+|...|.+++|+|++ .+|++|+.||+ |++||++++.....+.
T Consensus 180 ~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~----------------------- 235 (355)
T 3vu4_A 180 QQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFR----------------------- 235 (355)
T ss_dssp -------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEE-----------------------
T ss_pred cccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEE-----------------------
Confidence 2 77888999999999999988 89999999998 9999999876654431
Q ss_pred eeC-cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee--E--------------------EeccCCccEEEEEEc
Q 013873 267 HMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--I--------------------YHTKRMQRVFCVKFS 323 (434)
Q Consensus 267 ~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~--------------------~~~~~~~~v~~~~~s 323 (434)
.+ |...|++++|+|+|++|++++.|++|++||+..+.... . +..........++|+
T Consensus 236 -~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 236 -RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp -CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred -cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 14 89999999999999999999999999999997653211 0 011111234679999
Q ss_pred CCCCEEEEeeCCCcEEEeecCcccc
Q 013873 324 CDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 324 ~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+++++|++++.||.+++|++..++.
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 9999999999999999999987654
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.5e-28 Score=227.32 Aligned_cols=269 Identities=10% Similarity=0.069 Sum_probs=209.8
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE-----EeeccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-----QYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
.+..+..+ ..+.+++|+|++ .++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEEEcCC-CCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 34444444 346699999965 888899999999999999998876 34578899999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE-Ee--CCeEEEEeCCCCcceeeeecCCCceEEE
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA-TA--GAQVDIWNHNRSQPINSFQWGTDTVISV 209 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i 209 (434)
|++||+.++.. ......+...+.+++++|++..++ ++ ++.|.+||+.+++.+..+..+ ..+.++
T Consensus 193 v~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLAY------------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGL 259 (433)
T ss_dssp EEEEETTTCCE------------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEE
T ss_pred EEEEECCCceE------------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEE
Confidence 99999976532 122223456788999999998774 44 367999999999888777764 568999
Q ss_pred EEcCCCCcEEEEEe--------cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 210 RFNPAEPNVLATTA--------SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 210 ~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
+|+|++ ..+++++ .||.|++||+++......+ .|...+.+++|+|
T Consensus 260 ~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 312 (433)
T 3bws_A 260 LLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--------------------------GPPGNKRHIVSGN 312 (433)
T ss_dssp EECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------------EEEECEEEEEECS
T ss_pred EEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------------cCCCCcceEEECC
Confidence 999998 5666666 5889999999876543322 3556788999999
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC---------------CCcEEEeecCc
Q 013873 282 TGRE-FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD---------------DTNLRLWKAKA 345 (434)
Q Consensus 282 ~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~v~vw~~~~ 345 (434)
+++. +++++.|+.|++||+.+++....+.. ...+.+++|+|++++|++++. ||.|++||+.+
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 9975 46668899999999999887776643 367999999999999888876 57999999999
Q ss_pred ccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChH
Q 013873 346 SEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKP 388 (434)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (434)
++.+..+.. ...+..++++|....+
T Consensus 391 ~~~~~~~~~------------------~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 391 DTVKEFWEA------------------GNQPTGLDVSPDNRYL 415 (433)
T ss_dssp TEEEEEEEC------------------SSSEEEEEECTTSCEE
T ss_pred CcEEEEecC------------------CCCCceEEEcCCCCEE
Confidence 887765532 2345667777765544
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.6e-27 Score=217.40 Aligned_cols=230 Identities=10% Similarity=0.143 Sum_probs=189.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++ ...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------EEE
Confidence 578899999999999999999998888664 58999999999977 667789999999997763 344
Q ss_pred EEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 235 (434)
.......+.+++++|++..++.++ +.|.+||+.+++.+..+..+ ..+.+++|+|++..++++++.|+.|++||+.+
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 455566899999999999775433 67999999999888877764 56899999999965668888999999999987
Q ss_pred CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeeeEEeccCC
Q 013873 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRM 314 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 314 (434)
......+ .+...+.+++|+|+|++| ++++.|+.|++||+.+++....+...
T Consensus 148 ~~~~~~~--------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 199 (391)
T 1l0q_A 148 KAVINTV--------------------------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-- 199 (391)
T ss_dssp TEEEEEE--------------------------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--
T ss_pred CcEEEEE--------------------------ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--
Confidence 6554433 123456899999999987 57778899999999999877666433
Q ss_pred ccEEEEEEcCCCCEEEEee---CCCcEEEeecCcccccccC
Q 013873 315 QRVFCVKFSCDASYVISGS---DDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~---~dg~v~vw~~~~~~~~~~~ 352 (434)
..+.+++|+|++++|++++ .++.|++||+.+++.+..+
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 6789999999999999888 6899999999988876655
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-29 Score=247.73 Aligned_cols=231 Identities=17% Similarity=0.228 Sum_probs=191.1
Q ss_pred HHHHHHHHhhhhc--cccccccccCCCCCeEEEEeCCC--CCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEE
Q 013873 42 VRALTAAKLEKIF--ARPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGL 115 (434)
Q Consensus 42 ~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i 115 (434)
....+.+++|++. ....+..+.+|.+.|++++|+|+ + .+|++|+.||.|++||+.+++ .+..+.+|...|+++
T Consensus 27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE
Confidence 3334456778776 56778889999999999999988 7 899999999999999999886 677788899999999
Q ss_pred EEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-------------CCCEEEE
Q 013873 116 TVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-------------EGDLFAT 180 (434)
Q Consensus 116 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 180 (434)
+|+|+ +.+|++|+.||.|++||+..+.. ........+...+.++.++| ++..+++
T Consensus 106 ~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEECCSSSC----------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred EECCCCCCCEEEEEeCCCcEEEEEeecCCC----------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 99999 99999999999999999987633 23344456677899999999 5788887
Q ss_pred eC--CeEEEEeCCCC----cceeeeecCCCceEEEEEcCCC--CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 181 AG--AQVDIWNHNRS----QPINSFQWGTDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 181 ~~--~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
++ +.|++||++++ .....+..|...|.+++|+|++ +.+|++|+.||.|++||++........
T Consensus 176 gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~---------- 245 (753)
T 3jro_A 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK---------- 245 (753)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC----------
T ss_pred EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee----------
Confidence 75 67999999877 4556777899999999999993 489999999999999999876432111
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 303 (434)
.......|...|++++|+|+|++|++|+.||.|++||+..+
T Consensus 246 ----------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 246 ----------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ----------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ----------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 11122358889999999999999999999999999999854
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.3e-29 Score=227.38 Aligned_cols=295 Identities=13% Similarity=0.081 Sum_probs=186.2
Q ss_pred CeEEEEe---CCCCCceEEeeeCCCcEEEEeCCCC----------ceeEEeeccCCCeeEEEEc----------------
Q 013873 68 GISCMAK---NPNYLKGFFSGSMDGDIRLWDIANR----------RTVCQYSGHQGAVRGLTVS---------------- 118 (434)
Q Consensus 68 ~V~~~~~---~~~~~~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~---------------- 118 (434)
...++.| +|++..+++ ++.|+.|.+|+.... ..+..+ .+...+..+.|+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLA-IGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CEEEEEECTTSGGGTTEEE-EEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC--------
T ss_pred CCeEEEEeCCCCCCCCEEE-EECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcce
Confidence 3445555 445534444 445788999975321 111111 234445555443
Q ss_pred ----CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc--------CCCEEEEeC--Ce
Q 013873 119 ----TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--------EGDLFATAG--AQ 184 (434)
Q Consensus 119 ----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~ 184 (434)
+++.+|++++.|++|++||+..+...... .......|...|.+++|+| ++.+|++++ ++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~-------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQH-------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceee-------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 34568999999999999998766321100 0000123567899999997 788999886 56
Q ss_pred EEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCc-eeEEEeeCCCCccc
Q 013873 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANED-CNCYSYDSRKLDEA 263 (434)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (434)
|+|||+.++.++..+..|...+.+++|+|++..+|++|+.||+|++||+++.............. ..+...+... ...
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~-~~~ 246 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP-LVN 246 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG-GC-
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc-cee
Confidence 99999999988888888999999999999987799999999999999999876554332111110 0111111111 111
Q ss_pred eeeeeCcccCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC-----------------CccEEEEEEcC-
Q 013873 264 KCVHMGHESAVMDIDYS-PTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-----------------MQRVFCVKFSC- 324 (434)
Q Consensus 264 ~~~~~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~v~~~~~s~- 324 (434)
.....+|...+.++.|+ |+|+.|++++.|+.+++||+..+.....+..+. ........|+|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 12234788899999987 799999999999999999998766544332211 01112233444
Q ss_pred -CCCEEEEeeCCCcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCChHH
Q 013873 325 -DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 389 (434)
Q Consensus 325 -~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 389 (434)
++.++++|+.||.|++||+.+++.+..+ ..|...|++++|+|.-..++
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----------------~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIP-----------------IQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEE-----------------EECSSCEEEEEECTTSSEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEe-----------------cCCCCcEEEEEEcCCCCEEE
Confidence 4456778889999999999998776544 25677899999999876543
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.2e-28 Score=221.48 Aligned_cols=276 Identities=13% Similarity=0.042 Sum_probs=208.3
Q ss_pred HHHhhhh--cccccc--ccccCCCCCeEEEEeCC--------------CCCceEEeeeCC------CcEEEEeCCCCcee
Q 013873 47 AAKLEKI--FARPFI--GALDGHRDGISCMAKNP--------------NYLKGFFSGSMD------GDIRLWDIANRRTV 102 (434)
Q Consensus 47 ~~~~~~~--~~~~~~--~~l~~h~~~V~~~~~~~--------------~~~~~l~sg~~d------g~i~iwd~~~~~~~ 102 (434)
..++|++ .++..+ ..+.+|...+..+++++ .+ ..++.++.+ +.|++||+.. ...
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g-~~~ 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDG-YNQ 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence 3577887 776666 55888988888888775 13 455555543 7999999974 456
Q ss_pred EEeeccCCCeeEEEEcCCCCeEEEeeCCC---cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE
Q 013873 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDC---TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (434)
Q Consensus 103 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (434)
..+.+|...|.+++|+|+|++|++++.++ .|++||+.+++ ......+...+.+++|+|+|..++
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-------------~~~l~~~~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-------------VRQVASFPRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------------EEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------------EEEeecCCCcccCEEEcCCCCEEE
Confidence 77788999999999999999999999885 99999998763 233444556788999999999777
Q ss_pred -EeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec-CC--cEEEEEccCCCcceEEEeeecCcee
Q 013873 180 -TAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DR--SITLYDLRMSSPARKVIMRANEDCN 251 (434)
Q Consensus 180 -~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 251 (434)
+++ ..|.+||+.+++. ..+..+...+.+++|+|++ ..|++++. ++ .|.+||+.++...
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~------------ 304 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ------------ 304 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE------------
T ss_pred EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE------------
Confidence 442 2499999988765 5566677889999999999 55555554 55 5666777655421
Q ss_pred EEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCE
Q 013873 252 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 328 (434)
.+..+...+.+++|+|+|++|++++.+ ..|++||+.+++... +..+ ..+.+++|+|||++
T Consensus 305 --------------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~--~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 305 --------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST--FLDETPSLAPNGTM 367 (415)
T ss_dssp --------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS--SSCEEEEECTTSSE
T ss_pred --------------EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC--CCcCCeEEcCCCCE
Confidence 112455678899999999999988865 589999999887643 3222 37899999999999
Q ss_pred EEEeeCCC---cEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCCC
Q 013873 329 VISGSDDT---NLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 386 (434)
Q Consensus 329 l~s~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 386 (434)
|++++.++ .|++||+..+ .+..+. .+...|..++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~-~~~~l~-----------------~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGR-FKARLP-----------------ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSC-CEEECC-----------------CSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCCC-cEEEee-----------------CCCCCCcCCccccccc
Confidence 99888777 7999998744 333332 5667888899988764
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5.4e-25 Score=207.50 Aligned_cols=305 Identities=10% Similarity=0.073 Sum_probs=225.0
Q ss_pred HHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeC--CCCceeEEeeccCCCeeEEEEcC---
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI--ANRRTVCQYSGHQGAVRGLTVST--- 119 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~i~~~~--- 119 (434)
.+.+.+|+..+..++.++..+.. +.+++|+|+| ++|++++.|++|.+||+ .+++.+..+. +...+..++|+|
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~ 234 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKG 234 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTT
T ss_pred CCeEEEEECCCceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcC
Confidence 34456777777888888873333 8999999999 99999999999999999 8888888887 456789999999
Q ss_pred -CCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCCc
Q 013873 120 -DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQ 194 (434)
Q Consensus 120 -~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~ 194 (434)
+|++|++++. +++|.+||..+.+............ ....+.....+..+.+++++..++.. ++.|.+||..+.+
T Consensus 235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~-~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCCEEEEEEccCCeEEEEeccccccceeecccCccc-CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 9999998884 8999999988765432211100000 00001123367889999987765544 2679999998876
Q ss_pred cee--eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEE----------------------eeec-Cc
Q 013873 195 PIN--SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI----------------------MRAN-ED 249 (434)
Q Consensus 195 ~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------~~~~-~~ 249 (434)
.+. .+. +...+.++.|+|++..+++++..+++|.+||+.+++....+. .... .+
T Consensus 314 ~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 314 NLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD 392 (543)
T ss_dssp SCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC
Confidence 544 333 456678899999995566666678999999988764433221 1122 35
Q ss_pred eeEEEeeCCCC------ccceeeeeCcccCeEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCeee-eEEe-----
Q 013873 250 CNCYSYDSRKL------DEAKCVHMGHESAVMDIDYSPTGREFVTGS-------YDRTIRIFQYNGGRSR-EIYH----- 310 (434)
Q Consensus 250 ~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-------~d~~i~iwd~~~~~~~-~~~~----- 310 (434)
+.+.+|+.... ...+..+..|.+.+..++++|+|++|++++ .+++|.+||+.+++.. ..+.
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~ 472 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 472 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc
Confidence 67777877652 456667778888889999999999999987 3779999999998876 4431
Q ss_pred --ccCCccEEEEEEcCCCCEEEEee-----CCCcEEEeecCcccccccCCh
Q 013873 311 --TKRMQRVFCVKFSCDASYVISGS-----DDTNLRLWKAKASEQLGVLHP 354 (434)
Q Consensus 311 --~~~~~~v~~~~~s~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~~ 354 (434)
..+...+..+.|+|+|+.|+++. .|+.|.|||..+++++.++..
T Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 23346899999999999988662 479999999999999887763
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.2e-24 Score=186.84 Aligned_cols=281 Identities=11% Similarity=0.084 Sum_probs=178.9
Q ss_pred cccccccCCCC----CeEEEEeCCCCC--ceEEeeeCCCcEEEEeCCCC---ceeEEeeccCCCeeEEEEcCCCCeEEEe
Q 013873 57 PFIGALDGHRD----GISCMAKNPNYL--KGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 57 ~~~~~l~~h~~----~V~~~~~~~~~~--~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 127 (434)
+++.+|+.-.+ .+.++.|-..+. .-+++++. ..|++|+..++ +.++++..|..+|..+.+.|+...|++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 45566655444 366666766541 24566664 68999999998 8899999999888888888854433332
Q ss_pred eC-C-CcEEEeeCCCCCCCCCCCCCCCC-CCceeEEEecCceEEEeeccCCCEEEEe----CCeEEEEeC-CCCcceeee
Q 013873 128 GT-D-CTVKLWNVPVATLTDSDDSTDNS-SEPLAVYVWKNSFWAVDHQWEGDLFATA----GAQVDIWNH-NRSQPINSF 199 (434)
Q Consensus 128 ~~-d-g~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~d~-~~~~~~~~~ 199 (434)
.- + ..-.++-+.-..- ... ........+...++.+ ++++++.++ ++.|++|++ ..++.+..+
T Consensus 105 ~~~~~~~~~v~sla~spd-------~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSD-------DESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp EECSSSEEEEEEECC-------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred eeccccccceEEEEECCC-------ccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence 11 1 1111111110000 000 0111111112223332 466777774 457999999 558888888
Q ss_pred ecCCCceEEEEEcC--CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 200 QWGTDTVISVRFNP--AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 200 ~~~~~~i~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
..|...+..++|+| .++.+|++|+.|++|++||+.+++....+.. ...+...+.++
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g----------------------~~~~v~~v~~v 232 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI----------------------DDSYQASVCHK 232 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------CC---CCCEEE
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC----------------------CCcceeeeEEE
Confidence 88888888888888 2237999999999999999999877665520 00123467788
Q ss_pred EEccCCCEE------------EEEeCCCcEEEEeCCCCeeeeEEe----ccCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 278 DYSPTGREF------------VTGSYDRTIRIFQYNGGRSREIYH----TKRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 278 ~~sp~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
+|+|+|.++ ++|+.|++|++||..+++.+..+. .+|...+.+..+ ++.++++|+.||+|+||
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence 999999876 568889999999999998776542 233334444444 48899999999999999
Q ss_pred ecCcccccccCChhhhhhhHHHHHHHHhhccchhh-hhhhhccCCChHH
Q 013873 342 KAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEI-KRIVRHRHLPKPI 389 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~ 389 (434)
|+.+++.+.++.+ |...+ ..++|+|..+.++
T Consensus 311 Dl~tGk~l~tL~g-----------------H~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 311 DLLLGQCTALLPP-----------------VSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp ETTTCSEEEEECC-----------------C--CCCCEEEECSSSSEEE
T ss_pred ECCCCcEEEEecC-----------------CCCCeEEEEEECCCCCEEE
Confidence 9999999988753 44433 3478988766443
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=6.7e-24 Score=188.76 Aligned_cols=259 Identities=9% Similarity=0.053 Sum_probs=186.5
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEe-eeCCCcEEEEeCCCCce-eEEeeccCCCeeEEEEcCCCCeEE
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFS-GSMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTDGRILV 125 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~ 125 (434)
+.+++..+..++..+..+...+ +++|+|++ .+|++ +..++.|.+||+.+++. ...+..+..+..+++|+|++++|+
T Consensus 22 v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 99 (331)
T 3u4y_A 22 ISFFSTDTLEILNQITLGYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99 (331)
T ss_dssp EEEEETTTCCEEEEEECCCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred EEEEeCcccceeeeEEccCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence 4455666666766776667777 99999999 65554 44589999999999987 777777776666699999999999
Q ss_pred EeeCCC---cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---Ce-EEEEeCCCCccee-
Q 013873 126 SCGTDC---TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQ-VDIWNHNRSQPIN- 197 (434)
Q Consensus 126 s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-i~i~d~~~~~~~~- 197 (434)
++..++ .|.+||+.++. .............++++|+|..+++.+ +. +.+|++.....+.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNK-------------FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTE-------------EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred EecCCCCcccEEEEECCCCC-------------eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 655553 89999997763 233344455668999999998554432 56 9999987644331
Q ss_pred ---eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc---ceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 198 ---SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP---ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 198 ---~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
...........++|+|++..+++++..++.|.+||+.+... ...+ ...
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--------------------------~~~ 220 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV--------------------------GTN 220 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--------------------------ECS
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec--------------------------cCC
Confidence 11123456789999999965677777899999999987765 3222 123
Q ss_pred cCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCee--eeEEecc------CCccEEEEEEcCCCCEEEEee-CCCcEEEe
Q 013873 272 SAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRS--REIYHTK------RMQRVFCVKFSCDASYVISGS-DDTNLRLW 341 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~------~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw 341 (434)
..+..++|+|+|+++++++ .++.|.+||+.+++. ...+... .......++|+|||++|++++ .++.|.+|
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 5667899999999776554 578899999999877 2222211 111235689999999886655 56799999
Q ss_pred ecCccc
Q 013873 342 KAKASE 347 (434)
Q Consensus 342 ~~~~~~ 347 (434)
|+....
T Consensus 301 d~~~~~ 306 (331)
T 3u4y_A 301 TISGKV 306 (331)
T ss_dssp ETTSCE
T ss_pred EecCCc
Confidence 997654
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=7.7e-25 Score=200.43 Aligned_cols=243 Identities=12% Similarity=0.048 Sum_probs=187.4
Q ss_pred CCCCeEEEEeCCCCCceEEeee----CCC----cEEEEeC--CCCcee--EEeeccCCCeeEEEEcC-------------
Q 013873 65 HRDGISCMAKNPNYLKGFFSGS----MDG----DIRLWDI--ANRRTV--CQYSGHQGAVRGLTVST------------- 119 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~v~~i~~~~------------- 119 (434)
+...+....|.+.|..++++|+ .|| +|+|||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4568888999999877887886 467 8999999 888877 45888888888877764
Q ss_pred -CCCeEEEeeCC------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----CeEEE
Q 013873 120 -DGRILVSCGTD------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----AQVDI 187 (434)
Q Consensus 120 -~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i 187 (434)
.+..++.++.+ +.|++||+... .......+...+.+++|+|+|..+++++ ..|++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 15566666654 79999998643 3445556778899999999999888765 26999
Q ss_pred EeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
||+.+++.. .+..+...+.+++|+|++..++++++.+|. |++||+.+....
T Consensus 208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-------------------------- 260 (415)
T 2hqs_A 208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-------------------------- 260 (415)
T ss_dssp EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------------
T ss_pred EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--------------------------
Confidence 999988765 466677889999999999555557776665 889998765431
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC---CcEE
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSY-DR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD---TNLR 339 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~ 339 (434)
.+..|...+.+++|+|||++|++++. ++ .|++||+.+++... + ..+...+.+++|+|||++|++++.+ +.|+
T Consensus 261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 12357788999999999999988886 44 68888998876433 2 2233678899999999999988764 5899
Q ss_pred EeecCccccc
Q 013873 340 LWKAKASEQL 349 (434)
Q Consensus 340 vw~~~~~~~~ 349 (434)
+||+.+++..
T Consensus 339 ~~d~~~~~~~ 348 (415)
T 2hqs_A 339 KQDLATGGVQ 348 (415)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCCEE
Confidence 9999987653
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.6e-23 Score=197.56 Aligned_cols=259 Identities=13% Similarity=0.106 Sum_probs=202.0
Q ss_pred EeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC--CCCCCCCCCCCC
Q 013873 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV--PVATLTDSDDST 150 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~ 150 (434)
+|+|++ .++++++.|++|.+||..+++.+..+..+.. +.+++|+|+|++|++++.|++|.+||+ .++
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------- 212 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------- 212 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---------
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---------
Confidence 488887 8899999999999999999999999884333 899999999999999999999999999 444
Q ss_pred CCCCCceeEEEecCceEEEeecc----CCCEEEEeC---CeEEEEeCCCCcceeeeecC-----------CCceEEEEEc
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQW----EGDLFATAG---AQVDIWNHNRSQPINSFQWG-----------TDTVISVRFN 212 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-----------~~~i~~i~~~ 212 (434)
..............++++| +|+++++++ +.|.+||..+++++..+..+ ...+.++.++
T Consensus 213 ----~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 213 ----TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp ----EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred ----cEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 3344444566778999999 999888765 67999999999988877642 2368899999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcce-------------------E-EEeeecCceeEEEeeCCCCccceeeee----
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPAR-------------------K-VIMRANEDCNCYSYDSRKLDEAKCVHM---- 268 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 268 (434)
|+++.++++...++.|.+||+.+..... + +......+..+.+||....... ..+.
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~-~~i~~g~~ 367 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS-ALVDVGKT 367 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-EEEECSSS
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE-EeeccCCC
Confidence 9988888999999999999987643222 1 2334455778888988765332 2222
Q ss_pred CcccCeEEEEEccC-CCEEEEEe-CCCcEEEEeCCC-------CeeeeEEeccCCccEEEEEEcCCCCEEEEee------
Q 013873 269 GHESAVMDIDYSPT-GREFVTGS-YDRTIRIFQYNG-------GRSREIYHTKRMQRVFCVKFSCDASYVISGS------ 333 (434)
Q Consensus 269 ~~~~~i~~~~~sp~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------ 333 (434)
.|.+....+ ++|+ |..++++. .|++|.+||+.+ .+.+..+..+. ..+..++++|++++|++++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCc
Confidence 255444443 5777 66677765 589999999988 77777776544 5678899999999999987
Q ss_pred -CCCcEEEeecCccccc
Q 013873 334 -DDTNLRLWKAKASEQL 349 (434)
Q Consensus 334 -~dg~v~vw~~~~~~~~ 349 (434)
.++.|.|||+.+++..
T Consensus 446 ~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAK 462 (543)
T ss_dssp HHHTCEEEEETTCTTSC
T ss_pred ccCceEEEEECCCCCCC
Confidence 2779999999998876
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=3.2e-24 Score=191.20 Aligned_cols=261 Identities=12% Similarity=0.076 Sum_probs=190.6
Q ss_pred hhhcccccccccc-CCCC-CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc-----CCCeeEEEEcCCCCe
Q 013873 51 EKIFARPFIGALD-GHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-----QGAVRGLTVSTDGRI 123 (434)
Q Consensus 51 ~~~~~~~~~~~l~-~h~~-~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~i~~~~~~~~ 123 (434)
++..+...+..+. ++.. .+.+++|+|++..++++++.++.|.+||+.+++.+..+... ...+.+++|+|+|++
T Consensus 16 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 95 (337)
T 1pby_B 16 IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT 95 (337)
T ss_dssp EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE
T ss_pred EECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE
Confidence 3444444555554 2222 48899999998444566777899999999999887776531 226788999999999
Q ss_pred EEEee------------CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCC
Q 013873 124 LVSCG------------TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHN 191 (434)
Q Consensus 124 l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 191 (434)
|++++ .++.|.+||+.++. ..........+..+.++|++..++++++.+.+||+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~ 162 (337)
T 1pby_B 96 LAIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred EEEEecccccccccccccCceEEEEECCCCc-------------EEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECC
Confidence 98886 57999999997653 223333345567888999999888888899999999
Q ss_pred CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc-----------------------EEEEEccCCCcceEEEeeecC
Q 013873 192 RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS-----------------------ITLYDLRMSSPARKVIMRANE 248 (434)
Q Consensus 192 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-----------------------i~iwd~~~~~~~~~~~~~~~~ 248 (434)
+++.+..+..+.. ...+.|+|++..+++++..++. |.+||+.+.+..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------- 232 (337)
T 1pby_B 163 AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--------- 232 (337)
T ss_dssp TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---------
T ss_pred CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---------
Confidence 9988776665431 1133788988545444434443 345555444322
Q ss_pred ceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCE
Q 013873 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 328 (434)
......+...+.+++|+|+|++++++ ++.|.+||+.+++....+... ..+.+++|+|+|++
T Consensus 233 ---------------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 233 ---------------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGST 293 (337)
T ss_dssp ---------------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCE
T ss_pred ---------------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCE
Confidence 11223456678899999999999888 799999999999877766544 45789999999999
Q ss_pred EEEeeCCCcEEEeecCcccccccCC
Q 013873 329 VISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 329 l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
|++++.++.|.+||+.+++.+..+.
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999999999999999998877664
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=4e-24 Score=186.78 Aligned_cols=249 Identities=12% Similarity=0.111 Sum_probs=177.3
Q ss_pred HhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeecc-CCCeeEEEEcCCCCeEEE
Q 013873 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGH-QGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~i~~~~~~~~l~s 126 (434)
.+|+..+.... .+..|...|.+++|+|++ .+|++++ ++.|++||+.+ ++....+..| ...+.+++|+|++++|++
T Consensus 25 ~~~d~~~~~~~-~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 25 EIFNIRTRKMR-VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp EEEETTTTEEE-EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred EEEeCCCCcee-eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEE
Confidence 34444444433 566789999999999999 8888876 78999999998 8777666555 378899999999999999
Q ss_pred ee--CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE-Ee--CCeEEEEeCCC-Ccceeeee
Q 013873 127 CG--TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA-TA--GAQVDIWNHNR-SQPINSFQ 200 (434)
Q Consensus 127 ~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~i~d~~~-~~~~~~~~ 200 (434)
++ .++...||.++... ...........+..+.|+|++..++ ++ ++.+.+|++.. ......+.
T Consensus 102 ~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 102 SDKVEFGKSAIYLLPSTG------------GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp EECTTTSSCEEEEEETTC------------CCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred EEeCCCCcceEEEEECCC------------CceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 98 44566666553221 0111122233477889999999776 33 36678887532 23345556
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
.+...+.+++|+|++..+++++..++.+.+|++....... ..+..|...+.+++|+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV------------------------ERITDSAYGDWFPHPS 225 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE------------------------EECCCCSEEEEEEEEC
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc------------------------EEEecCCcccCCeEEC
Confidence 6778899999999995455555569999999986322111 1223566788999999
Q ss_pred cCCCEEEEEeCC-----------CcEEEEeCCCCeeeeEEe-ccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 281 PTGREFVTGSYD-----------RTIRIFQYNGGRSREIYH-TKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 281 p~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
|+|++|++++.+ +.|.+||+.+++...... ..+...+.+++|+|++++|++++.+.
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999888866 569999999886644432 23346788999999999998877653
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.5e-22 Score=180.92 Aligned_cols=253 Identities=10% Similarity=0.150 Sum_probs=172.9
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCC-CcEEEEeCC--CCc--eeEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEe
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMD-GDIRLWDIA--NRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLW 136 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iw 136 (434)
..|...+.+++|+|++ .+|++++.+ +.|.+|++. ++. .+..+..+. .+.+++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 3477789999999998 777777766 999999997 554 344455444 8899999999998877665 8899999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCC-Cccee----eeec-CCCceE
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNR-SQPIN----SFQW-GTDTVI 207 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~-~~~~~----~~~~-~~~~i~ 207 (434)
|+..+.. ............+.+++++|++..+++++ +.|.+||+.+ ++... .+.. ....+.
T Consensus 112 d~~~~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 112 RLEDGLP----------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp EEETTEE----------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred ECCCCcc----------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 9852211 12223333445678899999998766654 6799999987 54332 2222 234688
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
.++|+|++..+++++..++.|.+||+........... .... .. ........+.+++|+|+|++|+
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~---------~~~~--~~----~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ---------TLDM--MP----ENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE---------EEEC--SC----TTCCSCCCEEEEEECTTSSEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe---------eccc--cC----ccccccCCccceEECCCCCEEE
Confidence 8999999955666666899999999964221111000 0000 00 0001134577899999999877
Q ss_pred EE-eCCCcEEEEeCC--CCe--eeeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecC
Q 013873 288 TG-SYDRTIRIFQYN--GGR--SREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAK 344 (434)
Q Consensus 288 ~~-~~d~~i~iwd~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~ 344 (434)
++ ..++.|.+||+. ++. ....+..+ ..+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 54 478999999998 332 23333332 3488999999999888877 68999999554
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.3e-23 Score=205.71 Aligned_cols=261 Identities=10% Similarity=0.047 Sum_probs=181.2
Q ss_pred CCCeEEEEeCCCCCceEEeeeC-CC-----cEEEEeCCCCceeEEeeccCCC------------------------eeEE
Q 013873 66 RDGISCMAKNPNYLKGFFSGSM-DG-----DIRLWDIANRRTVCQYSGHQGA------------------------VRGL 115 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~-dg-----~i~iwd~~~~~~~~~~~~h~~~------------------------v~~i 115 (434)
...|.+++|+||| .+|++++. || .|++||+.+++....+..+... |.++
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 5679999999999 88999888 88 8999999999877766654433 8899
Q ss_pred EEcCCCCeEEEeeCCCcEEEeeCCCC---CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCC
Q 013873 116 TVSTDGRILVSCGTDCTVKLWNVPVA---TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHN 191 (434)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~ 191 (434)
+|+|||++|++++. +.|.+||+.++ ... ....+...+..++|+|+|+.++... +.|.+||+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-------------~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~ 180 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-------------QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA 180 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC-------------BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE-------------EcccCCcccccccCCCCCCEEEEEeCCcEEEEecC
Confidence 99999999999886 89999999876 321 1112245678899999999877665 679999999
Q ss_pred CCcceeeeecCCCc----------------eEEEEEcCCCCcEEEEEecCC-cEEEEEccCCCcc----eEEEee----e
Q 013873 192 RSQPINSFQWGTDT----------------VISVRFNPAEPNVLATTASDR-SITLYDLRMSSPA----RKVIMR----A 246 (434)
Q Consensus 192 ~~~~~~~~~~~~~~----------------i~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~----~~~~~~----~ 246 (434)
+++.......+... +.+++|+|+| ..|++++.|+ .+..|+.....+. ..+... .
T Consensus 181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 88766544433332 4779999999 5555555443 2333321000000 000000 0
Q ss_pred cCceeEEEeeCCC-Cccceeeee--CcccCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCeeeeEEeccCCc---
Q 013873 247 NEDCNCYSYDSRK-LDEAKCVHM--GHESAVMDIDYSPTGREFVTGSY-----DRTIRIFQYNGGRSREIYHTKRMQ--- 315 (434)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~--- 315 (434)
.....+++||... .. ...... .|...+..++| |||++|++++. +..|++||+.+++....+..+...
T Consensus 260 ~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 1112455555443 22 111111 47788999999 99999987764 567999999999877666544322
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 316 RVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.+.+++|+|||+++++++.||.++||.++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 34689999999999999999988888775
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=5.2e-22 Score=176.51 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=177.8
Q ss_pred EEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCC
Q 013873 72 MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~ 150 (434)
..|.+++...+++++.++.|.+||+.+++....+..+...+ +++|+|+++++++++. ++.|.+||+.++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------- 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP------- 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-------
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-------
Confidence 34566654668888999999999999999888887666677 9999999997776665 89999999987632
Q ss_pred CCCCCceeEEEecCceEE-EeeccCCCEEEEeC-C----eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec
Q 013873 151 DNSSEPLAVYVWKNSFWA-VDHQWEGDLFATAG-A----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 224 (434)
............. ++++|++.++++.. + .|.+||+.+++.+..+..+ ....+++|+|++..++++...
T Consensus 75 -----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 75 -----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp -----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEET
T ss_pred -----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecC
Confidence 1233333344444 99999999887654 3 7999999999888877654 456899999999667777777
Q ss_pred CCc-EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q 013873 225 DRS-ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNG 302 (434)
Q Consensus 225 dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~ 302 (434)
++. |.+|++.......... . ........+..++|+|+|++++++ ..++.|.+||+.+
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~--------------------~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 207 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTG--------------------Q-EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN 207 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEE--------------------E-EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCceEEEEEECCCCcEeecC--------------------C-ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 788 9999987543221110 0 001234457899999999966555 4688999999998
Q ss_pred Cee---eeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecCcccc
Q 013873 303 GRS---REIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQ 348 (434)
Q Consensus 303 ~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~ 348 (434)
++. ...+... ..+.+++|+|||++|++++ .++.|.+||+.+++.
T Consensus 208 ~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 208 PENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 887 5555433 5678999999999776554 578899999998876
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=6.2e-22 Score=177.63 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=189.4
Q ss_pred CCCCeEEEEeCCCCCceEEeeeC-------CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE-eeCCCcEEEe
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSM-------DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCTVKLW 136 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg~v~iw 136 (434)
....+..++|+|++ .++++++. ++.|.+||..+++.+..+.. ...+.+++|+|+++++++ ...++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45678899999998 67776663 56899999999998888764 455788999999996554 4557999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEc
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 212 (434)
|..+++.............. .........+.++|++..++.++ +.|.+||..+++.+..+..+...+.+++|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTE---EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCS---SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred eCCCCeeEEEEecCCCcccc---ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99877542221110000000 00001257799999998666543 459999999999888887555668899999
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC-
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY- 291 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~- 291 (434)
|++ ..+++++.++.|.+||+.+......+... ..++...+.+++|+|+|+++++++.
T Consensus 194 ~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 194 SEG-KRLYTTNADGELITIDTADNKILSRKKLL---------------------DDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TTT-TEEEEECTTSEEEEEETTTTEEEEEEECC---------------------CSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcC---------------------CCCCCcccceEEECCCCCEEEEEeCC
Confidence 998 67777888999999999877655443210 0134556888999999998777665
Q ss_pred CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeecCcccccccC
Q 013873 292 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~ 352 (434)
++.|.+||+.+++....+.... ..+++|+|+++++++++ .++.|.+||..+++.+..+
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4899999999998877765543 25799999999666555 6899999999998877655
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=2e-22 Score=180.53 Aligned_cols=267 Identities=9% Similarity=0.057 Sum_probs=184.3
Q ss_pred EEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCC
Q 013873 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~ 148 (434)
.+++++++ .++++++.+++|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++......
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 35677777 889999999999999999999888876443 2578999999998665 55568999999998764321110
Q ss_pred CCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------------CeEEEEeCCCCcce---eeeecCCCceEEEEE
Q 013873 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------------AQVDIWNHNRSQPI---NSFQWGTDTVISVRF 211 (434)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~~~~---~~~~~~~~~i~~i~~ 211 (434)
.... +. .....+..++++|+|..+++++ +.|.+||+.+++.. ..+.. ...+.+++|
T Consensus 83 ~~~~---~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (349)
T 1jmx_B 83 LSSV---PG---EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRA 155 (349)
T ss_dssp SCCS---TT---EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEE
T ss_pred cccc---cc---cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeE
Confidence 0000 00 0012367889999999887766 67999999885433 33333 346889999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecC-------------------------------------------
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANE------------------------------------------- 248 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------------------------------- 248 (434)
+|++. +++ ++ +.|.+||+.+......+......
T Consensus 156 s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 156 ADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp CTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 99995 544 43 34999999877654433211100
Q ss_pred ceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC
Q 013873 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 327 (434)
......++.............+...+.+++|+| +|++++++ ++.|.+||+.+++....+... ..+.+++|+|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSS
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCCCC
Confidence 000001222221111112223445678999999 99999888 889999999999887766544 3577999999999
Q ss_pred EEEEeeCCCcEEEeecCcccccccCC
Q 013873 328 YVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 328 ~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
+|++++.++.|.+||+.+++.+..+.
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeeee
Confidence 88888889999999999988876653
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=4.8e-23 Score=179.92 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=178.6
Q ss_pred eeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC-CCCCCCCCCCCCCCCceeEEEe
Q 013873 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV-ATLTDSDDSTDNSSEPLAVYVW 162 (434)
Q Consensus 84 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (434)
.++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ +........ ..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-----------~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-----------FA 83 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT-----------TC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc-----------cc
Confidence 4567899999999988766 4455899999999999999999876 78999999987 543221110 01
Q ss_pred cCceEEEeeccCCCEEEEeC----C--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 163 KNSFWAVDHQWEGDLFATAG----A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~----~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
...+.++.|+|++..++++. + .|..++...+. ...+..+ ..+..++|+|++..++++++.++.+.+|++...
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 24567789999999888876 2 35556665554 3334333 348899999999656668889999999997543
Q ss_pred CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCeeeeEEeccCC
Q 013873 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYN-GGRSREIYHTKRM 314 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~ 314 (434)
.... ..+..+...+.+++|+|+|++|++++ .++.+.+|++. .+.....+.. +.
T Consensus 162 ~~~~------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 216 (297)
T 2ojh_A 162 SGVE------------------------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-SA 216 (297)
T ss_dssp TCCE------------------------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-CS
T ss_pred CCcc------------------------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-CC
Confidence 2111 12235677899999999999888766 58999999886 3444444433 33
Q ss_pred ccEEEEEEcCCCCEEEEeeCC-----------CcEEEeecCcccccccCChhhhhhhHHHHHHHHhhccchhhhhhhhcc
Q 013873 315 QRVFCVKFSCDASYVISGSDD-----------TNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHR 383 (434)
Q Consensus 315 ~~v~~~~~s~~~~~l~s~~~d-----------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 383 (434)
..+.+++|+|+|++|++++.+ +.|++||+.+++....... ..|...+..++|+|
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL---------------FGGQGTMNSPNWSP 281 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE---------------EESTTTSCSCCBCT
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc---------------CCCCcccccceECC
Confidence 678999999999999988765 5699999988765322210 13455677788888
Q ss_pred CCChHH
Q 013873 384 HLPKPI 389 (434)
Q Consensus 384 ~~~~~~ 389 (434)
....++
T Consensus 282 dg~~l~ 287 (297)
T 2ojh_A 282 DGDEFA 287 (297)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 766544
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.2e-21 Score=175.37 Aligned_cols=259 Identities=11% Similarity=0.069 Sum_probs=171.7
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeC---CCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEEe
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLW 136 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iw 136 (434)
..+...+..++|+|+| . |++++. ++.|.+||+.++. .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 3456778889999998 6 554443 6899999997765 3444455778899999999999888887 68999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEe----------cCceEEEeeccCCCEEEEeC--CeEEEEeCC-CCcce--eeeec
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVW----------KNSFWAVDHQWEGDLFATAG--AQVDIWNHN-RSQPI--NSFQW 201 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~-~~~~~--~~~~~ 201 (434)
++...... ........ ...+.+++++|+|.++++.. +.|.+|++. .++.. ..+..
T Consensus 114 ~~~~~g~~----------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 114 KIAADGAL----------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp EECTTSCE----------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred EeCCCCCe----------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence 99632110 11111111 12467899999999666653 469999998 44332 12222
Q ss_pred C-CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEc
Q 013873 202 G-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 280 (434)
Q Consensus 202 ~-~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 280 (434)
. ...+..++|+|++..+++++..++.|.+|++............ ..... . . ......+..++|+
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~---------~~~~~--~---~-~~~~~~~~~i~~s 248 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI---------VKTIP--A---D-YTAHNGAAAIRLS 248 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---------EESSC--T---T-CCSCCEEEEEEEC
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee---------eeecC--C---C-CCCCCcceeEEEC
Confidence 2 2357789999999556666778899999998752211111000 00000 0 0 0112458899999
Q ss_pred cCCCEE-EEEeCCCcEEEEeCCCC---eeeeEEeccCCccEEEEEEcCCCCEEEEeeC-CCcEEEe--ecCccccc
Q 013873 281 PTGREF-VTGSYDRTIRIFQYNGG---RSREIYHTKRMQRVFCVKFSCDASYVISGSD-DTNLRLW--KAKASEQL 349 (434)
Q Consensus 281 p~~~~l-~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~vw--~~~~~~~~ 349 (434)
|||++| +++..++.|.+|++... .....+..+ ...+.+++|+|||++|++++. ++.|.+| |..++++.
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999987 45566899999999732 223333322 245789999999998888775 4899999 54556543
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=7.5e-23 Score=201.56 Aligned_cols=267 Identities=13% Similarity=0.073 Sum_probs=182.9
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC---CeeEEEEcCCCCeEEEeeCC---------CcEE
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG---AVRGLTVSTDGRILVSCGTD---------CTVK 134 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~~d---------g~v~ 134 (434)
..+.+++|+|+| .++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.
T Consensus 17 ~~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 347789999999 77766 7899999999999988877777665 49999999999999998764 7888
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCce-------
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTV------- 206 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i------- 206 (434)
+||+.++........ ..+...+..++|+|+|+.++... ++|.+||+.+++.......+...+
T Consensus 95 ~~d~~~~~~~~l~~~----------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPP----------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp EEESSSCCCEECCCT----------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred EEECCCCceEeccCC----------ccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 999987753111000 01122366789999998877765 689999999887766555433333
Q ss_pred -----------EEEEEcCCCCcEEEEEe-cCCcEEEEEccCCCc-----ceEEEee----ecCceeEEEeeCCCCcccee
Q 013873 207 -----------ISVRFNPAEPNVLATTA-SDRSITLYDLRMSSP-----ARKVIMR----ANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 207 -----------~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 265 (434)
.+++|+|+| ..|++++ .++.+.+|++..... ...+... ......+++||........
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~- 242 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL- 242 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-
T ss_pred eeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-
Confidence 789999999 5555555 445677777642211 1111111 1123477888876543222
Q ss_pred eeeC------cccCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCeeeeEEeccCCccE----EEEEEcCCCCEEEE
Q 013873 266 VHMG------HESAVMDIDYSPTGREFVTGSY----DRTIRIFQYNGGRSREIYHTKRMQRV----FCVKFSCDASYVIS 331 (434)
Q Consensus 266 ~~~~------~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s 331 (434)
.+.. +...+..++|||||++|++.+. +..|++||+.+++....+...+...+ ..++|+|||+.|+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 2222 3667899999999998877653 35799999999887666544433333 37899999997765
Q ss_pred --eeCCC------cEEEee-cCccc
Q 013873 332 --GSDDT------NLRLWK-AKASE 347 (434)
Q Consensus 332 --~~~dg------~v~vw~-~~~~~ 347 (434)
+..+| .|.+|| ...++
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEecccCCCcceeEEEEEeccCCCC
Confidence 44667 577777 34433
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=8.1e-23 Score=187.61 Aligned_cols=213 Identities=16% Similarity=0.243 Sum_probs=154.9
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----------ceeE-----EeeccCCCeeEEEEcCCCCeEE----
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----------RTVC-----QYSGHQGAVRGLTVSTDGRILV---- 125 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----------~~~~-----~~~~h~~~v~~i~~~~~~~~l~---- 125 (434)
+...++.+++++++ .++++|+.|| +++|+.... ..+. ....+...|.+++|+|++++|+
T Consensus 35 ~~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 34578999999998 8899999888 899875311 0111 1123567899999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCc
Q 013873 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDT 205 (434)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 205 (434)
+|+.|+.|++||+.+...... ....+ ...+..+.+|...
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~-----~~~~~------------------------------------~~~~~~~~~h~~~ 151 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAK-----QQKRP------------------------------------FAYHKLLKDAGGM 151 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTC-----SSCCC------------------------------------SEEEECCCSGGGS
T ss_pred ccCCCceEEEEEccccccCCc-----CCcce------------------------------------eeeeeccCCCCCc
Confidence 788999999999864310000 00000 0112344567889
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
|.+++|+|+++.+|++++.||+|++||+++..... ...+|...|++++|+|+|++
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~-------------------------~~~~~~~~v~~v~wspdg~~ 206 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC-------------------------ATLPSTVAVTSVCWSPKGKQ 206 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE-------------------------EEECGGGCEEEEEECTTSSC
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee-------------------------eccCCCCceeEEEEcCCCCE
Confidence 99999999866899999999999999998763221 12368889999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEecc------CCccEEEEEEcCCCCEEEEe-eCCCc------EEEeecCcc
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHTK------RMQRVFCVKFSCDASYVISG-SDDTN------LRLWKAKAS 346 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~-~~dg~------v~vw~~~~~ 346 (434)
|++|+.||.|++||++ +.....+..+ +...|.+++|++++.++++. +.||. +++|++...
T Consensus 207 lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 207 LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999999999999998 4444443221 22379999999998887653 34433 899999765
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=5.5e-21 Score=171.44 Aligned_cols=246 Identities=9% Similarity=0.065 Sum_probs=182.3
Q ss_pred HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC---------eeEEEEc
Q 013873 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA---------VRGLTVS 118 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~i~~~ 118 (434)
+.+++..+...+..+.. ...+..++|+|+|..+++++..++.|.+||..+++.+..+..+... +.++.|+
T Consensus 71 v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC
Confidence 33444445555555543 3457889999998335566677899999999999988887755432 7889999
Q ss_pred CCCCeEEEee--CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCceEEEeeccCCCEEEEeC--CeEEEEeCCCC
Q 013873 119 TDGRILVSCG--TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS 193 (434)
Q Consensus 119 ~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~ 193 (434)
|+++++++++ .++.|.+||..+++.. .... .......+.++|++..+++++ +.+.+||..++
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGGNIKLK-------------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETTTTEEE-------------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred CCCCEEEEEecCCCceEEEEcCCCCceE-------------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999887776 4789999999766432 2222 233466788999999777765 57999999999
Q ss_pred cceeeeec----CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 194 QPINSFQW----GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 194 ~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
+.+..+.. +...+..++|+|++..++++...++.|.+||+.+.+....+.. +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------~ 272 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA------------------------P 272 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC------------------------S
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc------------------------C
Confidence 88877664 4456788999999965666666679999999987765544310 1
Q ss_pred cccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 270 HESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
. ...++|+|+|+++++++ .++.|.+||..+++....+... ..+.+++|+|+|++|+++..++
T Consensus 273 ~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTSCEEEEEEECC
T ss_pred C---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCCCEEEEEEccc
Confidence 1 24689999999766555 6899999999999887776554 4689999999999887776654
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.7e-21 Score=189.90 Aligned_cols=269 Identities=12% Similarity=0.064 Sum_probs=179.0
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC-----C
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV-----A 141 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~-----~ 141 (434)
..|.+++|+|++ .++++. ++.|++||+.+++... +..+...+.+++|+|+|++|+++ .|+.|.+|++.+ +
T Consensus 82 ~~v~~~~~spd~-~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGRG-LVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTTT-EEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCCC-eEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 579999999994 555553 5999999998886544 44577789999999999999985 689999999987 5
Q ss_pred CCCCCCCCCCCCCCcee-----EEEecCceEEEeeccCCCEEEEeC----------------------------------
Q 013873 142 TLTDSDDSTDNSSEPLA-----VYVWKNSFWAVDHQWEGDLFATAG---------------------------------- 182 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 182 (434)
.......... .... .......+.++.|+|||..++++.
T Consensus 157 ~~~~~~~~~~---~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 157 RAIAVTIDGT---ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCEESCSCCB---TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred CcEEeccCCC---CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 4322111100 0000 000011246889999999888764
Q ss_pred -CeEEEEeCCCCcceeeee--cCCCceEEEEEcCCCCcEEEEEecCC-----cEEEEEccCCCcceEEE-----------
Q 013873 183 -AQVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPNVLATTASDR-----SITLYDLRMSSPARKVI----------- 243 (434)
Q Consensus 183 -~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~----------- 243 (434)
..|.+||+.+++...... .+...+.+++|+|++ ..|++++.++ .|.+||+.++.....+.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 359999999887554432 356779999999999 6677766665 89999988762222211
Q ss_pred --------------eeecCceeEEEeeCCCCccceeeeeCcccCeEE-EEEccCCCEEEEEeCC-C----cEEEEeCCCC
Q 013873 244 --------------MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD-IDYSPTGREFVTGSYD-R----TIRIFQYNGG 303 (434)
Q Consensus 244 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-~----~i~iwd~~~~ 303 (434)
..+..++...+|...........+..|...+.. ++|+|+|+.|+.++.+ + .|..||+.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 111111212222222122233344566677876 7999999987666544 3 6777787776
Q ss_pred eeeeEEeccCCccEEEEEEcCCCCEEEEeeCC----CcEEEeecCccc
Q 013873 304 RSREIYHTKRMQRVFCVKFSCDASYVISGSDD----TNLRLWKAKASE 347 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~vw~~~~~~ 347 (434)
... .+. +...+.+++|+|||++|+.++.+ +.|++||+.+++
T Consensus 393 ~~~-~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 KTK-DLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCE-ESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred Cce-ecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 532 222 23568999999999988876543 569999998876
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=3.7e-22 Score=196.65 Aligned_cols=287 Identities=11% Similarity=0.007 Sum_probs=190.5
Q ss_pred cCCCCCCChhhhhhhHHHHHHHHhhhhccccccccccCCCC---CeEEEEeCCCCCceEEeeeCC---------CcEEEE
Q 013873 27 NYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPNYLKGFFSGSMD---------GDIRLW 94 (434)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~~l~sg~~d---------g~i~iw 94 (434)
...+.+.|..+... ......+.+|+..++.....+.+|.. .|.+++|+||| ++|++++.+ +.|++|
T Consensus 19 ~~~~~~spdg~~~~-~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEE-EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEE
Confidence 34555666555332 22334567788888877777777765 49999999999 888888764 788899
Q ss_pred eCCCCceeEEee---ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe---------
Q 013873 95 DIANRRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW--------- 162 (434)
Q Consensus 95 d~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------- 162 (434)
|+.+++. ..+. +|...+..++|+|||+.|++++. +.|++||+.++.......... ........
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~---~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK---EGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB---TTTEEEEECCHHHHHTT
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC---CCceECcccceeEEEEe
Confidence 9998876 3333 34555889999999999999886 799999998764321111000 00000000
Q ss_pred cCceEEEeeccCCCEEEEeC--C----------------------------------eEEEEeCCCCcceeeeecC----
Q 013873 163 KNSFWAVDHQWEGDLFATAG--A----------------------------------QVDIWNHNRSQPINSFQWG---- 202 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~----------------------------------~i~i~d~~~~~~~~~~~~~---- 202 (434)
...+.++.|+|||..|+.+. + .|.+||+.+++....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 01236899999999887753 1 6899999888765555543
Q ss_pred --CCceEEEEEcCCCCcEEEEEec----CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCe--
Q 013873 203 --TDTVISVRFNPAEPNVLATTAS----DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAV-- 274 (434)
Q Consensus 203 --~~~i~~i~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-- 274 (434)
...+.+++|+|++ .++++.+. +..|.+||+.++.....+. ..+...+
T Consensus 252 ~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------------------~~~~~~~~~ 306 (723)
T 1xfd_A 252 MREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE------------------------DESEAWLHR 306 (723)
T ss_dssp GSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE------------------------EECSSCCCC
T ss_pred CccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEE------------------------eccCCEEec
Confidence 5678999999998 56655543 3578999988765432221 1122333
Q ss_pred --EEEEEccCCCEEEE--EeCCC------cEEEEe-CCCCee--eeEEeccCCccEEE-EEEcCCCCEEEEeeCC---Cc
Q 013873 275 --MDIDYSPTGREFVT--GSYDR------TIRIFQ-YNGGRS--REIYHTKRMQRVFC-VKFSCDASYVISGSDD---TN 337 (434)
Q Consensus 275 --~~~~~sp~~~~l~~--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~ 337 (434)
..++|+|||+.|+. +..++ .|.+|| ..++.. ...+..++ ..+.. ++|+|||+.|+..+.+ +.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 36899999997775 45566 577777 344431 33333333 34444 6999999999766554 78
Q ss_pred EEEeecCcc
Q 013873 338 LRLWKAKAS 346 (434)
Q Consensus 338 v~vw~~~~~ 346 (434)
+++|++...
T Consensus 386 ~~l~~~~~~ 394 (723)
T 1xfd_A 386 RQLYSANTV 394 (723)
T ss_dssp CEEEEECSS
T ss_pred eEEEEEeCC
Confidence 999998653
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=7.6e-20 Score=164.59 Aligned_cols=262 Identities=10% Similarity=0.061 Sum_probs=168.0
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCC----CcEEEEeCCC--Cce--eEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEE
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMD----GDIRLWDIAN--RRT--VCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKL 135 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~d----g~i~iwd~~~--~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~i 135 (434)
|......++|+|+| .+|++++.+ |.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 67788899999999 888888875 7999998865 432 3334445566777888 777777766 5789999
Q ss_pred eeCCCCCCCCCCCCC--CCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcc------e-------e
Q 013873 136 WNVPVATLTDSDDST--DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP------I-------N 197 (434)
Q Consensus 136 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~------~-------~ 197 (434)
|++............ .....+.........+.+++++|+|..++..+ +.+.+|++..... + .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332211100 00000000000122357799999999655443 5699998775431 1 1
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
...........++|+|++..++++...++.|.+||+.++........ .....+......+
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~--------------------~~~~~~~~~~~~i 264 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV--------------------AADTVNAQGSGDI 264 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE--------------------ESCSSCCCCEEEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE--------------------ecCCCCCCCcccE
Confidence 11223456789999999954445554789999999985432111100 0111233456899
Q ss_pred EEccCCCEEEEEeCC--CcEEEEeCC--CCeeeeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeec--Cccccc
Q 013873 278 DYSPTGREFVTGSYD--RTIRIFQYN--GGRSREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKA--KASEQL 349 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d--~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~--~~~~~~ 349 (434)
+|+|||++|++++.+ +.|.+|++. ++.............+.+++|+|||++|++++ .++.|.+|++ .+++..
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 999999998776654 899999986 44432222111135678999999999988887 6789999655 456554
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=3.4e-22 Score=191.69 Aligned_cols=235 Identities=9% Similarity=0.044 Sum_probs=170.2
Q ss_pred CCCeEEEEeCCCCCceEEeeeC-CCcEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGT---DCTVKLWNVPV 140 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~ 140 (434)
..+|.+++|+||| +.||+++. ||++.||++.+++.. .+..|. ..+.++.|+|+ +.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 4579999999999 88888776 999999999666554 444455 68999999999 77777765 45567766543
Q ss_pred --CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC--EEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 141 --ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD--LFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
... .. ...........+++|++. +++++. +.+.+||+.+++.......+. .+++|+|+|
T Consensus 98 ~~~g~------------~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG 161 (582)
T 3o4h_A 98 SRPGE------------EQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRG 161 (582)
T ss_dssp TSTTC------------CE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEET
T ss_pred cCCCc------------cc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCC
Confidence 211 00 001111233456777774 444444 457799998887655444332 789999999
Q ss_pred CcEEEEEecC----CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 216 PNVLATTASD----RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 216 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
..+++++.+ +.|++||+.++... .+..|...+..++|||||++|+++..
T Consensus 162 -~~la~~~~~~~~~~~i~~~d~~~g~~~--------------------------~l~~~~~~~~~~~~SpDG~~l~~~~~ 214 (582)
T 3o4h_A 162 -DLIAGLGFFGGGRVSLFTSNLSSGGLR--------------------------VFDSGEGSFSSASISPGMKVTAGLET 214 (582)
T ss_dssp -TEEEEEEEEETTEEEEEEEETTTCCCE--------------------------EECCSSCEEEEEEECTTSCEEEEEEC
T ss_pred -CEEEEEEEcCCCCeEEEEEcCCCCCce--------------------------EeecCCCccccceECCCCCEEEEccC
Confidence 677777766 67999998766532 12367788899999999999998888
Q ss_pred CC--cEEEEeCCCCeeeeEEeccCCccEEEEE--------EcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 292 DR--TIRIFQYNGGRSREIYHTKRMQRVFCVK--------FSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 292 d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
++ .|++||+.+++.. .+ ..+...+..++ |+|||.++++++.||.+++|++ ++.+.
T Consensus 215 ~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 215 AREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp SSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred CCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 88 8999999998876 43 33334555566 9999999999999999999999 65543
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=2e-21 Score=191.86 Aligned_cols=249 Identities=9% Similarity=0.031 Sum_probs=172.6
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.|.+++|+||| ++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|.+||+.++....
T Consensus 110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 48999999999 88888876 999999998873 4455677888999999999999999887 5699999998764332
Q ss_pred CCCCCCCCCCceeEEE--------ecCceEEEeeccCCCEEEEeC--C--------------------------------
Q 013873 146 SDDSTDNSSEPLAVYV--------WKNSFWAVDHQWEGDLFATAG--A-------------------------------- 183 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~-------------------------------- 183 (434)
...... ... ... ....+..+.|+|||..++.+. +
T Consensus 187 ~~~~~~---~~~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 187 LTADGS---TTI-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp CCCCCC---SSE-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred eccCCc---cce-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 211100 000 000 001246789999999887763 2
Q ss_pred -eEEEEeCCC-Ccceeeee--cCCCceEEEEEcCCCCcEEEEEec-----CCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 184 -QVDIWNHNR-SQPINSFQ--WGTDTVISVRFNPAEPNVLATTAS-----DRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 184 -~i~i~d~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
.|.+||+.+ ++...... .+...+..++| |++ ..|++++. ++.|.+||+.++.....+
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------ 328 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLA------------ 328 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEE------------
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEE------------
Confidence 688899988 76554332 36678999999 999 45554432 567999998876543322
Q ss_pred eeCCCCccceeeeeCccc----CeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeeeEEeccCCccEEEE-EEcCCCCE
Q 013873 255 YDSRKLDEAKCVHMGHES----AVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCV-KFSCDASY 328 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~----~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~-~~s~~~~~ 328 (434)
..+.. .+..++|+|||+++++++.||.+.+|.++ .+. ...+..+ ...+..+ .|+|+++.
T Consensus 329 -------------~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 329 -------------HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGL 393 (741)
T ss_dssp -------------EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTE
T ss_pred -------------EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCE
Confidence 11211 34678999999999999999988887765 333 4444333 3667777 59999997
Q ss_pred EEE-eeCCC--cEEEeecCc-ccccccC
Q 013873 329 VIS-GSDDT--NLRLWKAKA-SEQLGVL 352 (434)
Q Consensus 329 l~s-~~~dg--~v~vw~~~~-~~~~~~~ 352 (434)
|+. ++.++ .++||++.. +.....+
T Consensus 394 l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp EEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred EEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 764 45555 899999864 4434333
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=3.9e-21 Score=196.25 Aligned_cols=252 Identities=12% Similarity=0.140 Sum_probs=189.8
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
..+.+|...+.++.|+++ .++++++.||.+.||.+.. +.....+..|. .+...+|+|+|++|+++ .++.|.+|++
T Consensus 197 ~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred EECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 455889999999999987 6777888899999998653 44455565554 46778999999999887 4899999998
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeec-cCCCEEEEe-CCeEEEEeCCCCcceeeeecCCC-ceEEEEEcCCC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATA-GAQVDIWNHNRSQPINSFQWGTD-TVISVRFNPAE 215 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~ 215 (434)
....+. ..... ..........+...+..++|+ |+|..++.+ .+.+.+|+...+.... +..+.. .+..++|+ ++
T Consensus 273 ~~~~l~-~l~~~-~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 273 DTEKIE-KIEIG-DLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TTCCEE-ECCCC-CCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SE
T ss_pred CceEee-eeccC-cccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CC
Confidence 443322 11111 111112223345578899999 999877665 4789999998776443 555666 89999999 77
Q ss_pred CcEEEEEecCCcEE-EEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 216 PNVLATTASDRSIT-LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 216 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
..|++++.++.+. +||+...... .+.+|...+..++|+|||++|++++.++.
T Consensus 349 -~~l~~~s~~~~l~~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 349 -VAFIHGTREGDFLGIYDYRTGKAE--------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp -EEEEEEETTEEEEEEEETTTCCEE--------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred -CeEEEEECCCceEEEEECCCCCce--------------------------EecCCccceeeeEECCCCCEEEEECCCCe
Confidence 6777777777888 8887654321 11256778999999999999999999999
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC----------cEEEeecCccc
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT----------NLRLWKAKASE 347 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~v~vw~~~~~~ 347 (434)
|++||+.+++....... +...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 402 v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEEECCCCceEEeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999887666543 446789999999999999887654 89999999876
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.6e-20 Score=166.29 Aligned_cols=233 Identities=10% Similarity=0.142 Sum_probs=158.4
Q ss_pred ceEEeeeCCCcEEEEeCC-CC--ceeEEeeccCCCeeEEEEcCCCCeEEEeeCC-CcEEEeeCC--CCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIA-NR--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-CTVKLWNVP--VATLTDSDDSTDNS 153 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~-~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~ 153 (434)
.++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------- 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------- 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------
Confidence 445555789999999985 33 233333 477889999999999999988886 999999997 3321
Q ss_pred CCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCC---CCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc
Q 013873 154 SEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHN---RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
...........+..++++|++..++++ ++.|.+||+. ..+.+..+.. ...+.+++|+|++..+++++..++.
T Consensus 75 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 75 -TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp -EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred -eeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCE
Confidence 222233334477889999999976554 3569999994 3344444443 3458899999998545444448999
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC--Ce
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNG--GR 304 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~--~~ 304 (434)
|.+||+........... ..........+.+++|+|+|+++++++ .++.|.+||+.. +.
T Consensus 153 v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDP-------------------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EEEEEECTTSCEEEEEE-------------------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEEEEecCCCceeeecc-------------------cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 99999976222211100 000112334678899999999776555 789999999954 43
Q ss_pred e--eeEEec---c--CCccEEEEEEcCCCCEEEE-eeCCCcEEEeecC
Q 013873 305 S--REIYHT---K--RMQRVFCVKFSCDASYVIS-GSDDTNLRLWKAK 344 (434)
Q Consensus 305 ~--~~~~~~---~--~~~~v~~~~~s~~~~~l~s-~~~dg~v~vw~~~ 344 (434)
. ...... . ....+.+++|+|++++|++ +..++.|.+|++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 122211 1 1235678999999998874 4478999999998
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=8.6e-20 Score=186.36 Aligned_cols=257 Identities=9% Similarity=0.047 Sum_probs=192.9
Q ss_pred cccCCCC-CeEEEEeCCCCCceEEeeeCCCcEE-EEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeC
Q 013873 61 ALDGHRD-GISCMAKNPNYLKGFFSGSMDGDIR-LWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (434)
Q Consensus 61 ~l~~h~~-~V~~~~~~~~~~~~l~sg~~dg~i~-iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~ 138 (434)
.+..|.. .+.+++|+ +| ..|+.++.++.+. +||+.+++... +.+|...+.+++|+|+|++|++++.++.|++||+
T Consensus 331 ~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~ 407 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence 4667777 89999999 88 8888888888898 99998776543 4478889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEE-EecCceEEEeeccCCCEEEEeC------------CeEEEEeCCCCcceeeeecCCCc
Q 013873 139 PVATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAG------------AQVDIWNHNRSQPINSFQWGTDT 205 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~ 205 (434)
.++.. .... .+...+..++|+|+|.++++++ +.|.+||+.+++ +..+..+...
T Consensus 408 ~tg~~-------------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~ 473 (1045)
T 1k32_A 408 ETGKP-------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH 473 (1045)
T ss_dssp TTCCE-------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB
T ss_pred CCCce-------------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc
Confidence 87632 2222 3455678899999999887653 269999999877 6667777788
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE------------------------eeCCCCc
Q 013873 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS------------------------YDSRKLD 261 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~ 261 (434)
+.+++|+|+| ..|++++.++....|+........ .....++. ++.....
T Consensus 474 ~~~~~~spdG-~~l~~~s~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 546 (1045)
T 1k32_A 474 DYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSF------EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 546 (1045)
T ss_dssp EEEEEECTTS-CEEEEEESCCCCCEECSSSSCEEC------CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred cCCceEcCCC-CEEEEEecccCCcCcchhcccccc------ccCceeEEEEeCCCCCCccccCcCccccccccccccCHh
Confidence 8999999999 677788888888888865332210 00111111 2222212
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEE-------------EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCE
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVT-------------GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~-------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 328 (434)
.....+..|.+.+..++++|+|.++++ ...+..|.+||+.+++..... ..+.+++|||||++
T Consensus 547 ~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~~~S~DG~~ 621 (1045)
T 1k32_A 547 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRKT 621 (1045)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEEEECTTSCE
T ss_pred HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----cCcceEEECCCCCE
Confidence 223344457788999999999987775 123457889999888754333 45889999999999
Q ss_pred EEEeeCCCcEEEeecCccc
Q 013873 329 VISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 329 l~s~~~dg~v~vw~~~~~~ 347 (434)
|++++.+ .|++||+.+++
T Consensus 622 l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 622 VMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEETT-SCEEEEESSCT
T ss_pred EEEEcCC-cEEEEeCccCc
Confidence 9998866 89999998887
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.1e-20 Score=166.40 Aligned_cols=234 Identities=8% Similarity=0.030 Sum_probs=165.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCC--CeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCc
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG--AVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (434)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++.......... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-E-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-T--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-c--
Confidence 5789999999999999999998887763322 588999999998664 555678999999987643211100000 0
Q ss_pred eeEEEecCceEEEeeccCCCEEEEeC--------------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEE
Q 013873 157 LAVYVWKNSFWAVDHQWEGDLFATAG--------------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
.+...+..++++|++..+++++ +.|.+||+.+++.+..+.. ...+.+++|+|++. .|+++
T Consensus 79 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~ 152 (337)
T 1pby_B 79 ----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-KLYGL 152 (337)
T ss_dssp ----EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-CEEEE
T ss_pred ----cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC-EEEEe
Confidence 0112456789999998777663 6799999999888777765 45578899999984 45455
Q ss_pred ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC---------
Q 013873 223 ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR--------- 293 (434)
Q Consensus 223 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--------- 293 (434)
++.|.+||+.+......+.. ..+..+ +.|+|+|+.++..+.++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~-----------------------~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPI-----------------------QSWEAE---TYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECS-----------------------TTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred --CCeEEEEECCCCcEeeeeec-----------------------cccCCC---ceeCCCccEEeeeccCCCceeeeeec
Confidence 68999999987654433210 000122 26788888665544332
Q ss_pred ---------------cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 294 ---------------TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 294 ---------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.|.+||+.+++........+...+.+++|+||+++|+++ ++.|.+||+.+++.+..+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 468999999877532233333568899999999999988 789999999988776554
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.2e-20 Score=185.32 Aligned_cols=263 Identities=11% Similarity=0.075 Sum_probs=164.8
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-EEeeccC-----------------CCeeEEEEcCCCCeEEEeeCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQ-----------------GAVRGLTVSTDGRILVSCGTD 130 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~l~s~~~d 130 (434)
+..+.|. | ..+++++.|| | +||+.+++.+ ..+..|. ..|.+++|+|+ ..++.+. +
T Consensus 28 ~~~~~w~--g-~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--G-DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--T-TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc--C-CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4556777 4 5667777777 8 9999999873 3433333 56999999999 6666554 5
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCC-----CcceeeeecCCC
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNR-----SQPINSFQWGTD 204 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~-----~~~~~~~~~~~~ 204 (434)
+.|++||+.++. ..........+..++|+|+|..++.. ++.|.+||+.+ ++.......+..
T Consensus 101 ~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 101 GGLVGFDMLARK-------------VTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TEEEEEETTTTE-------------EEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CEEEEEECCCCc-------------eEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 999999997663 22333334567778999999877765 47799999998 776654444333
Q ss_pred c--------------eEEEEEcCCCCcEEEEEecC-CcEEEEEccCCCcceEEEe--------eecCceeEEEeeCCCCc
Q 013873 205 T--------------VISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKVIM--------RANEDCNCYSYDSRKLD 261 (434)
Q Consensus 205 ~--------------i~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 261 (434)
. +.++.|+|++ ..|++++.| ..+..+.+........... ....+..+++||.....
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 2 4789999999 566666522 2111111110000000000 01123445555544322
Q ss_pred cceee-eeCcccCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC-eeeeEEeccCCc---cEEEEEEcC--CCCEE
Q 013873 262 EAKCV-HMGHESAVMDIDYSPTGREFVTGSYDR-----TIRIFQYNGG-RSREIYHTKRMQ---RVFCVKFSC--DASYV 329 (434)
Q Consensus 262 ~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~-~~~~~~~~~~~~---~v~~~~~s~--~~~~l 329 (434)
..... ...|...+.+++|+|||++|++++.|+ .|.+||+.++ ............ .+.+++|+| ||+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 11111 124667899999999999999988776 8999999998 443333222212 246789999 99999
Q ss_pred EEeeCCCcEEEeecC-cccccccC
Q 013873 330 ISGSDDTNLRLWKAK-ASEQLGVL 352 (434)
Q Consensus 330 ~s~~~dg~v~vw~~~-~~~~~~~~ 352 (434)
++++.||.++||.+. +++.+..+
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEEC
T ss_pred EEEccCCccEEEEEECCCCEEEec
Confidence 999999999999886 45544444
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=1e-19 Score=163.85 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=167.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC-CCceeEEeecc-CCCeeEEEEcCCCCe--EEEee------------
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA-NRRTVCQYSGH-QGAVRGLTVSTDGRI--LVSCG------------ 128 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~i~~~~~~~~--l~s~~------------ 128 (434)
+...+..++|+|+| .+|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34568899999999 888888887 99999997 77655433211 134667899999994 55553
Q ss_pred -CCCcEEEeeCCC-CCCCCCCCCCCCCCCceeEEE--ecCceEEEeeccCCCEEEEeC---CeEEEEeCC-CCcce--ee
Q 013873 129 -TDCTVKLWNVPV-ATLTDSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEGDLFATAG---AQVDIWNHN-RSQPI--NS 198 (434)
Q Consensus 129 -~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~-~~~~~--~~ 198 (434)
.+|.+.+|++.. +... ....... ....+..++++|+|+.+++++ +.|.+|++. +++.. ..
T Consensus 116 ~~~g~v~v~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLE----------KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp SSCCEEEEEEECTTCCEE----------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred cCCceEEEEccCCCCcCc----------ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence 689999999964 3211 1111111 235688999999999777653 469999998 66543 23
Q ss_pred ee--cCCCceEEEEEcCCCCcEEEEEe-cCCcEEEEEccC--CCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc-
Q 013873 199 FQ--WGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRM--SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES- 272 (434)
Q Consensus 199 ~~--~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (434)
+. .+...+..++|+|++. ++++++ .++.|.+|++.. +.......... ... . ...+|..
T Consensus 186 ~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-------~~~-----~---~~~g~~~~ 249 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFP-------LIP-----P---GIPDRDPE 249 (365)
T ss_dssp EECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEE-------SSC-----T---TCCCBCTT
T ss_pred EecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEE-------cCC-----C---CcCCcccc
Confidence 33 1345689999999994 555544 578999998763 22111000000 000 0 0012222
Q ss_pred -----CeEEEE-EccCCCEEEEEeCCC------cEEEEeCC-CCeeeeEE--eccCCccEEEEEEcC---CCCEEEEeeC
Q 013873 273 -----AVMDID-YSPTGREFVTGSYDR------TIRIFQYN-GGRSREIY--HTKRMQRVFCVKFSC---DASYVISGSD 334 (434)
Q Consensus 273 -----~i~~~~-~sp~~~~l~~~~~d~------~i~iwd~~-~~~~~~~~--~~~~~~~v~~~~~s~---~~~~l~s~~~ 334 (434)
.+..++ |+|||++|++++.+. .|.+|++. +++..... .......+..++|+| ||++|++++.
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 578999 999999988776432 89999996 56544321 122224466899999 8999999886
Q ss_pred C-CcEEEeecCcc
Q 013873 335 D-TNLRLWKAKAS 346 (434)
Q Consensus 335 d-g~v~vw~~~~~ 346 (434)
+ +.|.+|++...
T Consensus 330 ~~~~v~v~~~~~~ 342 (365)
T 1jof_A 330 QEGWLEIYRWKDE 342 (365)
T ss_dssp SSCEEEEEEEETT
T ss_pred CCCeEEEEEEchh
Confidence 4 89999998765
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=186.34 Aligned_cols=261 Identities=11% Similarity=0.085 Sum_probs=171.4
Q ss_pred EEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCC---CeeEEEEcCCCCeEEEeeC---------CCcEEEeeC
Q 013873 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG---AVRGLTVSTDGRILVSCGT---------DCTVKLWNV 138 (434)
Q Consensus 71 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~~---------dg~v~iwd~ 138 (434)
.++|+|+| .+++++ .||+|++||+.+++....+..|.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999998 766655 599999999999988777765544 4899999999999998876 789999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeee-cCCCce----------
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQ-WGTDTV---------- 206 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~i---------- 206 (434)
.++....... + ...+..++|+|||+.++... ++|++|++.+++...... ++...+
T Consensus 98 ~~g~~~~~~~--------l-----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 98 SNGEFVRGNE--------L-----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp TTTEECCSSC--------C-----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred CCCcccccee--------c-----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence 8875421000 0 13467799999998877654 689999998877654332 222212
Q ss_pred -------EEEEEcCCCCcEEEEEecC-CcEEEEEccCCCc---ce--EEEe----eecCceeEEEeeCCCCccc--ee--
Q 013873 207 -------ISVRFNPAEPNVLATTASD-RSITLYDLRMSSP---AR--KVIM----RANEDCNCYSYDSRKLDEA--KC-- 265 (434)
Q Consensus 207 -------~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~---~~--~~~~----~~~~~~~~~~~~~~~~~~~--~~-- 265 (434)
.+++|+|+| ..|++++.| +.+.+|.+..... .. .+.. .......+++||....... ..
T Consensus 165 ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 165 EEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 489999999 566666644 4444443321100 00 0000 0122335667776543321 01
Q ss_pred ---eeeCcccCeEEEEEccCCCEEEEEeCC----CcEEEEe----CCCCeeeeEEe---ccCCccEE-----EEEEcCCC
Q 013873 266 ---VHMGHESAVMDIDYSPTGREFVTGSYD----RTIRIFQ----YNGGRSREIYH---TKRMQRVF-----CVKFSCDA 326 (434)
Q Consensus 266 ---~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~---~~~~~~v~-----~~~~s~~~ 326 (434)
.+.+|...+..++||||++++++.... ..|.+|| +.+++...... ..+...+. .+.|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 123578889999999998877775433 2488999 87776654442 33334555 78999999
Q ss_pred CEEEE--eeCCC--cEEEeecCccc
Q 013873 327 SYVIS--GSDDT--NLRLWKAKASE 347 (434)
Q Consensus 327 ~~l~s--~~~dg--~v~vw~~~~~~ 347 (434)
+.|+. +..+| .|.+|++.+++
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CeEEEEEEccCCceEEEEEECCCCc
Confidence 96543 44555 46667776654
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=2.8e-19 Score=160.04 Aligned_cols=224 Identities=9% Similarity=0.125 Sum_probs=156.6
Q ss_pred HHhhhhccccccccccCCC-CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccC------CCeeEEEEcCC
Q 013873 48 AKLEKIFARPFIGALDGHR-DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ------GAVRGLTVSTD 120 (434)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~i~~~~~ 120 (434)
+.+++..+...+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++.+..+..+. ..+.+++|+|+
T Consensus 23 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 23 LHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp EEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred EEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC
Confidence 3455555556666665443 2578999999983345566678999999999998877766332 23788999999
Q ss_pred CCeEEEeeCC------------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEE
Q 013873 121 GRILVSCGTD------------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188 (434)
Q Consensus 121 ~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 188 (434)
|++|++++.+ +.|.+||+.++... ...........+.+++++|++. ++..+++|.+|
T Consensus 103 g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~i~~~ 171 (349)
T 1jmx_B 103 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----------KPVRTFPMPRQVYLMRAADDGS-LYVAGPDIYKM 171 (349)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----------CCSEEEECCSSCCCEEECTTSC-EEEESSSEEEE
T ss_pred CCEEEEEcccccccccccccCCCeEEEEECCCcccc----------ceeeeccCCCcccceeECCCCc-EEEccCcEEEE
Confidence 9999998865 89999999875431 2223333445677889999999 55567779999
Q ss_pred eCCCCcceeeeecCC-----------------------------------------------------------------
Q 013873 189 NHNRSQPINSFQWGT----------------------------------------------------------------- 203 (434)
Q Consensus 189 d~~~~~~~~~~~~~~----------------------------------------------------------------- 203 (434)
|..+++.+..+..+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999887766554321
Q ss_pred ---CceEEEEEcC-CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE
Q 013873 204 ---DTVISVRFNP-AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 279 (434)
Q Consensus 204 ---~~i~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 279 (434)
..+.+++|+| ++ .+++++ ++.|.+||+.+.+....+ .....+.+++|
T Consensus 252 ~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~ 302 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAA--------------------------NLDHTYYCVAF 302 (349)
T ss_dssp ECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEE--------------------------ECSSCCCEEEE
T ss_pred cCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEE--------------------------cCCCCccceEE
Confidence 1233455556 55 444444 667777776654433222 12334678999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeeeEEec
Q 013873 280 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHT 311 (434)
Q Consensus 280 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 311 (434)
+|+|++|++++.++.|.+||+.+++.+..+..
T Consensus 303 s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 303 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 99999998888899999999999887766643
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6.6e-19 Score=161.64 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=123.3
Q ss_pred CCCCCeEEEEeCCCCCceEE----eeeCCCcEEEEeCCCC--------ce---eEEeeccCCCeeEEEEcCC-CCeEEEe
Q 013873 64 GHRDGISCMAKNPNYLKGFF----SGSMDGDIRLWDIANR--------RT---VCQYSGHQGAVRGLTVSTD-GRILVSC 127 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~----sg~~dg~i~iwd~~~~--------~~---~~~~~~h~~~v~~i~~~~~-~~~l~s~ 127 (434)
.|...|++++|+|++ .+|+ +|+.|++|+|||+.++ +. ...+.+|...|.+++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 356789999999998 8888 8999999999998764 22 3456679999999999997 7899999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC---
Q 013873 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--- 202 (434)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--- 202 (434)
+.||+|++||+.++. .......+...+.+++|+|+|.++++++ +.|++||.+ ++....+..+
T Consensus 169 s~Dg~v~iwD~~~~~------------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 169 LADGSIAVLQVTETV------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp ETTSCEEEEEESSSE------------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred ECCCeEEEEEcCCCc------------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence 999999999997652 2222334567899999999999998886 579999998 5555444433
Q ss_pred ----CCceEEEEEcCCCCcEEEEEecCCc------EEEEEccCCC
Q 013873 203 ----TDTVISVRFNPAEPNVLATTASDRS------ITLYDLRMSS 237 (434)
Q Consensus 203 ----~~~i~~i~~~~~~~~~l~~~~~dg~------i~iwd~~~~~ 237 (434)
...+.+++|++++..+++.+..||. +++|+++...
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 2379999999977333333445543 8899998653
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=4.6e-18 Score=150.61 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=180.6
Q ss_pred CCCeEEEEeCCCCCceEEeeeCC------------------------CcEEEEeCCCCceeEEee-ccCCCeeEEEEcCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMD------------------------GDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTD 120 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~ 120 (434)
-+.+.+++++|+| .++++...+ ++|.+||..+++.+..+. ++-.....++++++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 5689999999998 888887777 479999998888876654 34457899999999
Q ss_pred CCeEEEeeCCCcEEEeeCCCCC-CCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC---CeEEEEeCCCCcc
Q 013873 121 GRILVSCGTDCTVKLWNVPVAT-LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG---AQVDIWNHNRSQP 195 (434)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~i~i~d~~~~~~ 195 (434)
|+++++...++.|++|+..... ....+........ ..........++++| ++.++++.. +.|.+|+ ..++.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~---~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS---DQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC---STTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC---CccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 9988888889999999975441 1111100000000 001123567899999 888888874 4599999 45666
Q ss_pred eeeeecC----------CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcccee
Q 013873 196 INSFQWG----------TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 196 ~~~~~~~----------~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
+..+... -.....++++|++..++++...++.|++||..++.....+.
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---------------------- 235 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---------------------- 235 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC----------------------
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe----------------------
Confidence 6655422 12378999999855888888899999999998665444331
Q ss_pred eeeCcccCeEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCeeeeEEe--ccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 266 VHMGHESAVMDIDYSP------TGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
...+...+..++|+| +|+.+++...+..|++||+.+++.+..+. ..+...+.+++++|+|.++++...++.
T Consensus 236 -~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 236 -HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp -CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred -ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 113456678888888 34433334445689999999998887763 233466899999999988888888999
Q ss_pred EEEeecCc
Q 013873 338 LRLWKAKA 345 (434)
Q Consensus 338 v~vw~~~~ 345 (434)
|++|++..
T Consensus 315 I~~~~~~~ 322 (329)
T 3fvz_A 315 VWKFTLTE 322 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCc
Confidence 99999864
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=5e-19 Score=174.23 Aligned_cols=265 Identities=10% Similarity=0.110 Sum_probs=177.1
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCC-----eeEEEEcCCCCeEEEeeCC---------CcE
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-----VRGLTVSTDGRILVSCGTD---------CTV 133 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~i~~~~~~~~l~s~~~d---------g~v 133 (434)
...++.|+|+| .+|+++ ||+|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 45689999998 888886 899999999999987777777643 2447899999999998876 567
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeee-ecCCCce-----
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSF-QWGTDTV----- 206 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~i----- 206 (434)
.+||+.++..... ..+...+...+|+|||+.++... ++|++|++.++...... .++...+
T Consensus 95 ~~~d~~~~~~~~l-------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 95 DIYDLNKRQLITE-------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEETTTTEECCS-------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEECCCCcEEEc-------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 7999988754321 11234678899999999777664 67999999887654322 2222222
Q ss_pred ------------EEEEEcCCCCcEEEEEe-cCCcEEEEEccCCCcc-----e--EEE--ee--ecCceeEEEeeCCC---
Q 013873 207 ------------ISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPA-----R--KVI--MR--ANEDCNCYSYDSRK--- 259 (434)
Q Consensus 207 ------------~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~--~~~--~~--~~~~~~~~~~~~~~--- 259 (434)
..+.|+|+| ..|+.++ .++.+.+|++...... . .+. .. ......+++|+...
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred cccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 348999999 5555555 4555888887432211 1 111 11 12234678888876
Q ss_pred Cc--cceeeee-----CcccCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCe----e---eeEEeccCCccEE---
Q 013873 260 LD--EAKCVHM-----GHESAVMDIDYSPTGREFVTGSY----DRTIRIFQYNGGR----S---REIYHTKRMQRVF--- 318 (434)
Q Consensus 260 ~~--~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~----~---~~~~~~~~~~~v~--- 318 (434)
.. ....... +|...+..++|+|||+.++.... +..|.+||+.+++ + ...+...+...+.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~ 320 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence 42 2222221 37788999999999997665533 3379999999887 2 2222222323333
Q ss_pred --EEEEcCCCCEEE-Eee-CCC--cEEEeecCccccc
Q 013873 319 --CVKFSCDASYVI-SGS-DDT--NLRLWKAKASEQL 349 (434)
Q Consensus 319 --~~~~s~~~~~l~-s~~-~dg--~v~vw~~~~~~~~ 349 (434)
..+|+|||+.|+ ..+ .+| .|++|++.+++..
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 688999999877 555 344 5788888766544
No 160
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=2.4e-17 Score=143.16 Aligned_cols=244 Identities=15% Similarity=0.214 Sum_probs=172.1
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee------ccCCCeeEEEE-cCCCCeEEEeeC-CCcEE
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS------GHQGAVRGLTV-STDGRILVSCGT-DCTVK 134 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~i~~-~~~~~~l~s~~~-dg~v~ 134 (434)
.+|-....++++++++ .++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|.
T Consensus 26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 4567789999999998 888888889999999976 56665553 23457889999 467766665533 88999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeee--cCCCceEEEE
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ--WGTDTVISVR 210 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~--~~~~~i~~i~ 210 (434)
+||. ++.....+.. ........+++++++.++++.. +.|.+||.. ++.+..+. .+...+..++
T Consensus 104 ~~d~-~g~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 104 IYNQ-YGQFVRKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EECT-TSCEEEEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred EECC-CCcEEEEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEE
Confidence 9994 3322111100 0123567899999999888764 569999964 45555553 2345689999
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
+++++ .++++...++.|.+||.... ....+. ..++...+.+++++|+|+++++..
T Consensus 171 ~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~-----------------------~~g~~~~p~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 171 VNDKQ-EIFISDNRAHCVKVFNYEGQ-YLRQIG-----------------------GEGITNYPIGVGINSNGEILIADN 225 (286)
T ss_dssp ECSSS-EEEEEEGGGTEEEEEETTCC-EEEEES-----------------------CTTTSCSEEEEEECTTCCEEEEEC
T ss_pred ECCCC-CEEEEECCCCEEEEEcCCCC-EEEEEc-----------------------cCCccCCCcEEEECCCCCEEEEeC
Confidence 99988 68888788999999997432 111110 012235688999999999888888
Q ss_pred CCC-cEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 291 YDR-TIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 291 ~d~-~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
.++ .|.+||.. ++.+..+..+. ...+.+++++|+|+++++ +.|+.|++|++.....
T Consensus 226 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 226 HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 776 99999965 44445553332 234789999999987776 5799999999866443
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.5e-18 Score=156.29 Aligned_cols=252 Identities=13% Similarity=0.046 Sum_probs=167.6
Q ss_pred cccccccccCCCCCeEE-----EEeCCCCCceEEeeeC-CC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEE
Q 013873 55 ARPFIGALDGHRDGISC-----MAKNPNYLKGFFSGSM-DG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~-----~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 126 (434)
++..+..+..|...... .+|+||| .+|+.++. +| .|.+||+.+++......++...+..+.|+|+|+.|+.
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 34445667777766666 8899999 77777776 67 4888999998877766667666667889999999999
Q ss_pred eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc-eE--EEeeccCCCEEEEe----------------------
Q 013873 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS-FW--AVDHQWEGDLFATA---------------------- 181 (434)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~---------------------- 181 (434)
++.++.|.+||+.++.. ......... +. ...+++++..++..
T Consensus 98 ~~~~~~l~~~d~~~g~~-------------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEE-------------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp EETTTEEEEEETTTCCE-------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred EeCCCeEEEEECCCCcc-------------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 99999999999987632 112222222 21 22347888887631
Q ss_pred --CCeEEEEeCCCCcceeeeecCCCceEEEEEcC-CCCcEEEEEecC------CcEEEEEccCCCcceEEEeeecCceeE
Q 013873 182 --GAQVDIWNHNRSQPINSFQWGTDTVISVRFNP-AEPNVLATTASD------RSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 182 --~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
...|.+||+.+++... +..+...+..+.|+| ++ ..|+....+ ..|.++|+...... .+
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------- 231 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR-KV---------- 231 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE-ES----------
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE-Ee----------
Confidence 1459999999886544 334566789999999 88 555555543 36666776543221 11
Q ss_pred EEeeCCCCccceeeeeCcc--cCeEEEEEccCCCEEEEEeC-CC----cEEEEeCCCCeeeeEEeccCCcc----EEEEE
Q 013873 253 YSYDSRKLDEAKCVHMGHE--SAVMDIDYSPTGREFVTGSY-DR----TIRIFQYNGGRSREIYHTKRMQR----VFCVK 321 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~----v~~~~ 321 (434)
..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++............ ...++
T Consensus 232 ---------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 232 ---------------KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp ---------------CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred ---------------eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 1222 35778899999998765443 22 39999999887543322111000 11237
Q ss_pred EcCCCCEEEEe---------eCCCcEEEeecCcccc
Q 013873 322 FSCDASYVISG---------SDDTNLRLWKAKASEQ 348 (434)
Q Consensus 322 ~s~~~~~l~s~---------~~dg~v~vw~~~~~~~ 348 (434)
|+|||+.|+.. ..+..|++||+.+++.
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 99999988754 4567899999988765
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.5e-17 Score=148.79 Aligned_cols=224 Identities=13% Similarity=0.153 Sum_probs=147.7
Q ss_pred CCcEEEEeCC--CCceeE-EeeccCCCeeEEEEcCCCCeEEEeeC---CCcEEEeeCCCCCCCCCCCCCCCCCCceeE-E
Q 013873 88 DGDIRLWDIA--NRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAV-Y 160 (434)
Q Consensus 88 dg~i~iwd~~--~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~ 160 (434)
++.|.+|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++..+.. ..... .
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~ 82 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV 82 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee
Confidence 4567777654 455433 2334567788899999998 665554 68999999965532 12222 3
Q ss_pred EecCceEEEeeccCCCEEEEeC---CeEEEEeCCCC---cceeeeecC---------CCceEEEEEcCCCCcEEEEEecC
Q 013873 161 VWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS---QPINSFQWG---------TDTVISVRFNPAEPNVLATTASD 225 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~---~~~~~~~~~---------~~~i~~i~~~~~~~~~l~~~~~d 225 (434)
........++++|+|..+++++ +.+.+|++... ..+..+... ...+.+++|+|++. ++++...+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~ 161 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS 161 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC
Confidence 3456778899999999776654 57999998632 222322211 12478899999995 88777788
Q ss_pred CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE-EeCCCcEEEEeCCC--
Q 013873 226 RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT-GSYDRTIRIFQYNG-- 302 (434)
Q Consensus 226 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~-- 302 (434)
+.|.+|++.......... .........+..++|+|||+++++ +..++.|.+|++..
T Consensus 162 ~~v~~~~~~~~g~~~~~~---------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQS---------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp TEEEEEEECTTSCEEEEE---------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CEEEEEEECCCCcEEEee---------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 999999998322111110 000112235678999999996665 55688999999874
Q ss_pred CeeeeE--EeccC-----CccEEEEEEcCCCCEEE-EeeCCCcEEEeecCc
Q 013873 303 GRSREI--YHTKR-----MQRVFCVKFSCDASYVI-SGSDDTNLRLWKAKA 345 (434)
Q Consensus 303 ~~~~~~--~~~~~-----~~~v~~~~~s~~~~~l~-s~~~dg~v~vw~~~~ 345 (434)
++.... +.... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 543222 21111 13588999999999875 555689999999973
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=5.1e-17 Score=145.53 Aligned_cols=252 Identities=11% Similarity=0.092 Sum_probs=172.3
Q ss_pred CCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEeeCCCCCCCCCCCCCCCCCCc
Q 013873 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (434)
.|+.|.+||..+++.+..+..+..+ .++|+|++++++++. .++.|.+||..+.+..........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~---- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK---- 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence 4789999999999988888776655 899999999999886 367899999876543211110000
Q ss_pred eeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCcEEEEEecCCcEEEE
Q 013873 157 LAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLATTASDRSITLY 231 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iw 231 (434)
..........++++|+|+++++++ +.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|
T Consensus 103 --~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 103 --RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp --BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred --ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEE
Confidence 000113455788999999887753 4599999999988777 5532 223366788776788888999999999
Q ss_pred EccC-CCcceE-----------------------EEeeecCceeEEEeeCCCCccce-eeee--C----c----ccCeEE
Q 013873 232 DLRM-SSPARK-----------------------VIMRANEDCNCYSYDSRKLDEAK-CVHM--G----H----ESAVMD 276 (434)
Q Consensus 232 d~~~-~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----~----~~~i~~ 276 (434)
++.. +..... .......++.++.+|........ ..+. . + ......
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred EECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence 8754 221100 01112234456666654321111 0000 0 0 011123
Q ss_pred EEEccCCCEEEEEeC-----------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 277 IDYSPTGREFVTGSY-----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
++|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +.|.+||..+
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 789999888777643 3479999999999888876653 889999999999998887 9999999999
Q ss_pred c--cccccC
Q 013873 346 S--EQLGVL 352 (434)
Q Consensus 346 ~--~~~~~~ 352 (434)
+ +.+..+
T Consensus 335 ~~l~~~~~i 343 (361)
T 2oiz_A 335 PEPKLLRTI 343 (361)
T ss_dssp SSCEEEEEE
T ss_pred CcceeeEEe
Confidence 9 887765
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=1.8e-18 Score=157.25 Aligned_cols=281 Identities=12% Similarity=0.037 Sum_probs=182.4
Q ss_pred CCCCCChhhhhhhHHHH-HH--HHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe
Q 013873 29 DPNLRPQEKAVEYVRAL-TA--AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105 (434)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 105 (434)
+|.+.|..+...+.... .. +-+++..++.......+|...+..++|+|+| ..|+.++.++.|++||+.+++....+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcceeee
Confidence 46777877766665442 21 2233444555566667777777778899999 88999998999999999999877766
Q ss_pred eccCCCeeEEEE--cCCCCeEEEe----------------------eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE
Q 013873 106 SGHQGAVRGLTV--STDGRILVSC----------------------GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV 161 (434)
Q Consensus 106 ~~h~~~v~~i~~--~~~~~~l~s~----------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (434)
..+...+....| ++++.+++.. +.++.|.+||+.++. ......
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------------~~~l~~ 185 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------------STVILQ 185 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------------EEEEEE
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-------------eEEeec
Confidence 666665544444 8899888742 245789999987663 333445
Q ss_pred ecCceEEEeecc-CCCEEEEeC--------CeEEEEeCCCCcceeeeecCC-CceEEEEEcCCCCcEEEEEecCC----c
Q 013873 162 WKNSFWAVDHQW-EGDLFATAG--------AQVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTASDR----S 227 (434)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg----~ 227 (434)
....+..+.++| +|..++... ..|.++|...+.......... ..+..+.|+|+|..+++++..++ .
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 556688899999 998776532 158888877655433333222 35778999999965545444433 3
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE---------eCCCcEEEE
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG---------SYDRTIRIF 298 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~---------~~d~~i~iw 298 (434)
|.+||+.++.......... . ...... ...+.|+|||+.|+.. ..+..|++|
T Consensus 266 l~~~d~~~g~~~~l~~~~~---~-------------~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 266 IYSADPETLENRQLTSMPA---C-------------SHLMSN----YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp EEEECTTTCCEEEEEEECC---E-------------EEEEEC----TTSSEEEEEECCC------------CCCCEEEEE
T ss_pred EEEEecCCCceEEEEcCCC---c-------------eeeeec----CCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 9999998765322111000 0 000000 1123699999987754 446689999
Q ss_pred eCCCCeeeeEEeccCCc-----------cEEEEEEcCCCCEEEEee-CCCcEEEeecCc
Q 013873 299 QYNGGRSREIYHTKRMQ-----------RVFCVKFSCDASYVISGS-DDTNLRLWKAKA 345 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~ 345 (434)
|+.+++...... +. . .+.+++|+|||+.|+.++ .+|...||.+.-
T Consensus 326 d~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 326 NMKNGTQHRVAR-HD-TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp ETTTTEEEEEEE-CC-CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eccCCceEEecc-cc-CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 999887644332 22 2 467889999999887655 577777876653
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=172.98 Aligned_cols=284 Identities=11% Similarity=0.014 Sum_probs=182.5
Q ss_pred CCCCCCChhhhhhhHHHHHHHHhhhhccccccccccCCCC---CeEEEEeCCCCCceEEeeeC---------CCcEEEEe
Q 013873 28 YDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPNYLKGFFSGSM---------DGDIRLWD 95 (434)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~~l~sg~~---------dg~i~iwd 95 (434)
.++.+.|..+.. +......+.+|+..++.....+.+|.. .|.+++||||| ++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEE
Confidence 344555554321 111233456777777776666666654 49999999999 88888776 78999999
Q ss_pred CCCCcee--EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEec---------C
Q 013873 96 IANRRTV--CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK---------N 164 (434)
Q Consensus 96 ~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 164 (434)
+.+++.+ ..+ ...+.+++|+|||+.|+.+. ++.|++|++.++......... .......... .
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~---~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG---RENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC---BTTTEEESSCCHHHHHHTTC
T ss_pred CCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC---CcCCeEcccccceeeeeccc
Confidence 9988763 222 35688999999999999885 789999999877543211100 0000000000 1
Q ss_pred ceEEEeeccCCCEEEEeCC------------------------------------eEEEEeCCCCcce--------eeee
Q 013873 165 SFWAVDHQWEGDLFATAGA------------------------------------QVDIWNHNRSQPI--------NSFQ 200 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~------------------------------------~i~i~d~~~~~~~--------~~~~ 200 (434)
...++.|+|||..|+.+.. .+.+||+.+++.. ..+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 1247999999998887541 6889999887653 2233
Q ss_pred cCCCceEEEEEcCCCCcEEEEEecCC----cEEEEE----ccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCccc
Q 013873 201 WGTDTVISVRFNPAEPNVLATTASDR----SITLYD----LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES 272 (434)
Q Consensus 201 ~~~~~i~~i~~~~~~~~~l~~~~~dg----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (434)
.+...+.+++|+|++ .++++....+ .|.+|| +.++.....+. ....+|..
T Consensus 250 ~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~---------------------~~~~~~~~ 307 (719)
T 1z68_A 250 SSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE---------------------HIEESRTG 307 (719)
T ss_dssp TSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE---------------------EEEECSSS
T ss_pred CCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe---------------------cccccCCc
Confidence 567789999999996 6776644332 477888 54433221100 00024555
Q ss_pred CeE-----EEEEccCCCEEEE--EeCCC--cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC-----CcE
Q 013873 273 AVM-----DIDYSPTGREFVT--GSYDR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-----TNL 338 (434)
Q Consensus 273 ~i~-----~~~~sp~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v 338 (434)
.+. .+.|+|||+.|+. +..+| .|.+||+.++.. ..+. .+...+..+.++ +++.|+..+.+ +.+
T Consensus 308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 555 7899999996554 44455 577788877663 2332 233457777777 88877766654 889
Q ss_pred EEeecCc
Q 013873 339 RLWKAKA 345 (434)
Q Consensus 339 ~vw~~~~ 345 (434)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998764
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.7e-18 Score=163.67 Aligned_cols=259 Identities=14% Similarity=0.070 Sum_probs=173.2
Q ss_pred CCChhhhhhhHHH-HHHHHhhhhccccccccccCCC-CCeEEEEeCCCCCceEEeeeC---CCcEEEEeCCC---CceeE
Q 013873 32 LRPQEKAVEYVRA-LTAAKLEKIFARPFIGALDGHR-DGISCMAKNPNYLKGFFSGSM---DGDIRLWDIAN---RRTVC 103 (434)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~~l~sg~~---dg~i~iwd~~~---~~~~~ 103 (434)
+.|..+..++... ....++|.+-.+.. ..+..|. ..+..++|+|+ .++++++. +....+|.+.. +...
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~- 104 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ- 104 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-
T ss_pred cCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-
Confidence 3344444444332 33456777644444 4454555 78999999998 67777664 45556654432 2222
Q ss_pred EeeccCCCeeEEEEcCCCCe-EEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC
Q 013873 104 QYSGHQGAVRGLTVSTDGRI-LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (434)
Q Consensus 104 ~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
.+..+ ..+...+|+|+++. +++.+.++.+.+||+.++. ......... .++.++|||+.+++++
T Consensus 105 ~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-------------~~~l~~~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 105 RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-------------LRELARLPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-------------EEEEEEESS--CEEEEEEETTEEEEEE
T ss_pred cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-------------EEEeecCCC--ceEEECCCCCEEEEEE
Confidence 33322 23446688888763 3344444556699997663 222222222 7899999999998553
Q ss_pred ------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 183 ------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 183 ------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
..|.+||+.+++.. .+..+...+..++|+|+| ..|+++..+| .|++||+.++... .
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~------------- 232 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-D------------- 232 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-E-------------
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-E-------------
Confidence 34999999888754 566778889999999999 6677888888 8999998776543 1
Q ss_pred eeCCCCccceeeeeCcccCeEEEE--------EccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDID--------YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~--------~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
..+|...+..++ |+|||.++++++.|+.+++|++ ++... . ....+.+++|+ ++
T Consensus 233 ------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~-~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 233 ------------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---A-PQGNHGRVVLW-RG 293 (582)
T ss_dssp ------------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---C-CSSEEEEEEEE-TT
T ss_pred ------------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---c-CCCceEEEEec-CC
Confidence 123444444455 9999988999999999999999 65443 1 22678899999 99
Q ss_pred CEEEEeeCCC---cEEEeecCc
Q 013873 327 SYVISGSDDT---NLRLWKAKA 345 (434)
Q Consensus 327 ~~l~s~~~dg---~v~vw~~~~ 345 (434)
+++++++.+. .+.+|+...
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 9998888764 477777654
No 167
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.1e-16 Score=143.92 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=152.1
Q ss_pred ceEEeee----CCCcEEEEeC--CCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC----CcEEEeeCCCCCCCCCCCC
Q 013873 80 KGFFSGS----MDGDIRLWDI--ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD----CTVKLWNVPVATLTDSDDS 149 (434)
Q Consensus 80 ~~l~sg~----~dg~i~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~ 149 (434)
.+++.|+ .++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|++....-.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~----- 88 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT----- 88 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-----
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-----
Confidence 4556664 3567999876 4554433222267788889999999999998876 89999998653100
Q ss_pred CCCCCCceeEEE-ecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeee------c--------CCCceEEEEE
Q 013873 150 TDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ------W--------GTDTVISVRF 211 (434)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~------~--------~~~~i~~i~~ 211 (434)
...+.... .......+++ ++..+++++ +.+.+|++.....+..+. + +...+.+++|
T Consensus 89 ----~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 89 ----LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp ----EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred ----EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 01111111 2234455666 677665553 579999987543332211 1 1223578999
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCc------ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSP------ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 285 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 285 (434)
+|++..++++...++.|.+|++..... ..... ........+...+..++|+|+|++
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG------------------TPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE------------------EEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc------------------cccceecCCCCCCeEEEEcCCCCE
Confidence 999955666666789999999876542 11000 000011133456788999999998
Q ss_pred EEEEe-CCCcEEEEeCCCCeeeeEE--e--ccCCccEEEEEEcCCCCEEEEeeC--CCcEEEeecC
Q 013873 286 FVTGS-YDRTIRIFQYNGGRSREIY--H--TKRMQRVFCVKFSCDASYVISGSD--DTNLRLWKAK 344 (434)
Q Consensus 286 l~~~~-~d~~i~iwd~~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~vw~~~ 344 (434)
+++++ .++.|.+||+.++...... . ..+.....+++|+|||++|++++. ++.|.+|++.
T Consensus 225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 87777 6899999999877653222 1 112244689999999999877665 4899999996
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=7.9e-16 Score=134.21 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=173.5
Q ss_pred cccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
..+..+..+.....+++|+|++..+++++..++.|.+||..++ ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 3445566677888999999998338888889999999999877 56666777889999999999988777677899999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-------------------CCeEEEEeCCCCccee
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------------------GAQVDIWNHNRSQPIN 197 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~i~d~~~~~~~~ 197 (434)
|..++........ ........+..++++++|.++++. .+.|..++.. ++ +.
T Consensus 96 d~~~g~~~~~~~~--------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~ 165 (296)
T 3e5z_A 96 REPGGEWESIADS--------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LS 165 (296)
T ss_dssp CSTTCCEEEEECE--------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EE
T ss_pred cCCCCcEEEEeec--------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EE
Confidence 9876643111000 000112345678899999988863 1346666655 33 34
Q ss_pred eeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccC-CCc-ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSP-ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 198 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
.+..+......++|+|++ .++++.+.++.|.+|++.. +.. ..... . ..+...+.
T Consensus 166 ~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~----------------------~-~~~~~~p~ 221 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVH----------------------F-TVEPGKTD 221 (296)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEE----------------------E-CCSSSCCC
T ss_pred EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeE----------------------e-eCCCCCCC
Confidence 444555677899999999 4557788889999999862 221 11000 0 12344567
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEE-cCCCCEEEEeeCCCcEEEeecCccc
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF-SCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+++++++|+++++. ++.|.+||.. ++....+..+. . +++++| +|+++.|++++.+ .+.-++..+.+
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~-~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ-T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS-C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC-C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 79999999876666 7889999987 66666665443 3 889999 5899988888876 35555555543
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=2.9e-15 Score=132.99 Aligned_cols=250 Identities=11% Similarity=0.042 Sum_probs=170.7
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC----
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---- 130 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---- 130 (434)
.......+.++...+.+++|+|+| .+++++..++.|.+||..+++.......+...+.+++|+++++++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 33 TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKST 111 (333)
T ss_dssp ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSC
T ss_pred ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCC
Confidence 344455677788888999999998 777888889999999998887655544567789999999999877776666
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCcceeeeecC
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINSFQWG 202 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~ 202 (434)
+.|.+||..++........ ......+..+.++++|.++++.. +.|..+|..+++... +...
T Consensus 112 ~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIED----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp CEEEEECTTSCSCEEEECS----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred ceEEEEeCCCCEEEEEEcc----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 6899999876643211000 00124577899999999888765 346666665544332 2222
Q ss_pred CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC-CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 203 ~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
...+..++|+|++..++++.+.++.|.+||+... .....+.. .. .....++ ..+..+++++
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~-----------~~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TI-----------PYYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EE-----------EEECCSS-SEEEEEEEBT
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eE-----------EEecCCC-CCCCceEECC
Confidence 3457889999998546666667889999998642 22211100 00 0001122 3567899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCC-----ccEEEEEEcCCCCEEEEeeCC
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM-----QRVFCVKFSCDASYVISGSDD 335 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~d 335 (434)
+|+++++...++.|.+||.. ++....+..... ..+.+++|+||++.|+.++.+
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99988888788999999984 555555533321 158899999998777766555
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=4.9e-16 Score=139.77 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=149.6
Q ss_pred eEEeeeCC--CcEEEEeC--CCCceeE--Eee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC-CCCCCCCCCCCCC
Q 013873 81 GFFSGSMD--GDIRLWDI--ANRRTVC--QYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP-VATLTDSDDSTDN 152 (434)
Q Consensus 81 ~l~sg~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~ 152 (434)
+|+.|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. ++...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------- 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------- 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------
Confidence 45666653 56888765 4554422 121 233468899999999999998888 99999986 44321
Q ss_pred CCCceeEEEecCceEEEeeccCCCE--EEEe---------------CCeEEEEeCC-CCcceeeeec----CCCceEEEE
Q 013873 153 SSEPLAVYVWKNSFWAVDHQWEGDL--FATA---------------GAQVDIWNHN-RSQPINSFQW----GTDTVISVR 210 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~i~i~d~~-~~~~~~~~~~----~~~~i~~i~ 210 (434)
.............++++|+|+. ++++ ++.+.+|++. .++....+.. +...+.+++
T Consensus 75 ---~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (365)
T 1jof_A 75 ---HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV 151 (365)
T ss_dssp ---EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE
T ss_pred ---EeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE
Confidence 0111111123445789999984 4333 4579999987 4554433331 456789999
Q ss_pred EcCCCCcEEEEEe-cCCcEEEEEcc-CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE
Q 013873 211 FNPAEPNVLATTA-SDRSITLYDLR-MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 211 ~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 288 (434)
|+|++. +++++. .++.|.+||+. ++........ ....|...+..++|+|+|+++++
T Consensus 152 ~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~---------------------~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 152 FDPTET-YLYSADLTANKLWTHRKLASGEVELVGSV---------------------DAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp ECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEE---------------------ECSSTTCCEEEEEECTTSSEEEE
T ss_pred ECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeE---------------------ecCCCCCCCCEeEECCCCCEEEE
Confidence 999994 455544 46899999997 4432110000 00123556889999999999888
Q ss_pred EeC-CCcEEEEeCC--CCeeee---EEecc------CCc------cEEEEE-EcCCCCEEEEeeCCC------cEEEeec
Q 013873 289 GSY-DRTIRIFQYN--GGRSRE---IYHTK------RMQ------RVFCVK-FSCDASYVISGSDDT------NLRLWKA 343 (434)
Q Consensus 289 ~~~-d~~i~iwd~~--~~~~~~---~~~~~------~~~------~v~~~~-~s~~~~~l~s~~~dg------~v~vw~~ 343 (434)
++. ++.|.+|++. +++... .+... +.. .+..++ |+|||++|++++.+. .|.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 775 6899999865 455421 12111 111 588999 999999988766432 7999999
Q ss_pred C-cccc
Q 013873 344 K-ASEQ 348 (434)
Q Consensus 344 ~-~~~~ 348 (434)
. +++.
T Consensus 290 ~~~g~~ 295 (365)
T 1jof_A 290 RDCGSI 295 (365)
T ss_dssp CTTSCE
T ss_pred CCCCCE
Confidence 6 4543
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=7.8e-17 Score=157.00 Aligned_cols=252 Identities=11% Similarity=0.005 Sum_probs=170.5
Q ss_pred ccccCCCCCeEEEEeCCCCCceEEee--eCCCcEEEEeCCCCceeEEeeccCCCee---------EEEEc--CCCCe-EE
Q 013873 60 GALDGHRDGISCMAKNPNYLKGFFSG--SMDGDIRLWDIANRRTVCQYSGHQGAVR---------GLTVS--TDGRI-LV 125 (434)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~i~~~--~~~~~-l~ 125 (434)
..+.+|...|..++|++++ .++++. +.++...||....+.....+..|...+. ...|+ |||+. |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567899999999999886 666666 5688899998655555666766766666 66666 99998 77
Q ss_pred EeeC-CCcEEEeeCC--C-CCCCCCCCCCCCCCCceeEEE-----ecCceEEEeeccCCCEEEEeC------------Ce
Q 013873 126 SCGT-DCTVKLWNVP--V-ATLTDSDDSTDNSSEPLAVYV-----WKNSFWAVDHQWEGDLFATAG------------AQ 184 (434)
Q Consensus 126 s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------~~ 184 (434)
.++. +..|.+|++. . +.. ..... +...+..++|+|||+.++... .+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~-------------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVP-------------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCC-------------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCCC-------------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 6544 5566666664 2 321 11111 233567889999999887654 25
Q ss_pred EEEEeCCC------Ccceeeee-cCCCceEEEEEcCCCCcEEEEEecC--------CcEEEEEcc-CCCcceEEEeeecC
Q 013873 185 VDIWNHNR------SQPINSFQ-WGTDTVISVRFNPAEPNVLATTASD--------RSITLYDLR-MSSPARKVIMRANE 248 (434)
Q Consensus 185 i~i~d~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~ 248 (434)
|.+||+.+ ++. ..+. .+...+..++|+|+| ..|+.++.+ ..|.+||+. ++...
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~--------- 231 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA--------- 231 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---------
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc---------
Confidence 99999987 443 4444 555678889999999 566655544 368888887 33110
Q ss_pred ceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeeeeEEeccCCcc--------EE
Q 013873 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR--TIRIFQYNGGRSREIYHTKRMQR--------VF 318 (434)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~--------v~ 318 (434)
....+..+|...+..++|+|||+++++++.++ .|.+||+.+++...... .+... +.
T Consensus 232 -------------~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 232 -------------DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMR 297 (662)
T ss_dssp -------------EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCC
T ss_pred -------------ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCc
Confidence 01112234567889999999999888888888 67777776666543332 22111 56
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEe--ecCcccccccC
Q 013873 319 CVKFSCDASYVISGSDDTNLRLW--KAKASEQLGVL 352 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~~dg~v~vw--~~~~~~~~~~~ 352 (434)
.++|+|+++++++++. |.++|| |+.+++ +..+
T Consensus 298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp SEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred eEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence 7899999999999998 999999 444444 3444
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=5e-17 Score=147.99 Aligned_cols=243 Identities=13% Similarity=0.026 Sum_probs=155.2
Q ss_pred CeEEEEeCCCCCceEEeeeC-C--CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSM-D--GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
.+.+++|+|+| .+|+.... + ..|.+||+.+++......++......+.|+|+|++|+.++.++.|.+||+.++...
T Consensus 37 ~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 37788999999 76665543 3 36888999888765443333333334789999999999999999999999876432
Q ss_pred CCCCCCCCCCCceeEEEecCceE-------------EEeeccCCCEEEEe-------CCeEEEEeCCCCcceeeeecCCC
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFW-------------AVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTD 204 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~ 204 (434)
........ .......+. ...++|++..++.. ...|.+||+.+++..... .+..
T Consensus 116 ~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~ 188 (396)
T 3c5m_A 116 VIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA 188 (396)
T ss_dssp EEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred EEEecccc------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence 11110000 000000000 03567777766542 246999999887765444 4566
Q ss_pred ceEEEEEcC-CCCcEEEEEecC------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCc-ccCeEE
Q 013873 205 TVISVRFNP-AEPNVLATTASD------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGH-ESAVMD 276 (434)
Q Consensus 205 ~i~~i~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 276 (434)
.+..+.|+| ++ ..|+..+.+ ..|.+||+...... .+ .... ...+..
T Consensus 189 ~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l------------------------~~~~~~~~~~~ 242 (396)
T 3c5m_A 189 WLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-KI------------------------KEHAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-ES------------------------SCCCTTEEEEE
T ss_pred ccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-Ee------------------------eccCCCccccc
Confidence 789999999 66 545444433 35777776543211 11 0111 235778
Q ss_pred EEEccCCCEEEEEeCC-----CcEEEEeCCCCeeeeEEeccCCccEEEEEEcC-CCCEEEEee----------------C
Q 013873 277 IDYSPTGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGS----------------D 334 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~----------------~ 334 (434)
++|+|+|++|+.++.+ +.|++||+.+++........ ... +.|+| ||+++++++ .
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 9999999988777654 44999999988754433222 233 89999 999888754 3
Q ss_pred CCcEEEeecCcccc
Q 013873 335 DTNLRLWKAKASEQ 348 (434)
Q Consensus 335 dg~v~vw~~~~~~~ 348 (434)
++.|++||+.+++.
T Consensus 319 ~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 319 DPFLYVLNTKAKSA 332 (396)
T ss_dssp CCEEEEEETTTTBC
T ss_pred CCcEEEEecccCce
Confidence 47899999987764
No 173
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1e-15 Score=131.56 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=166.5
Q ss_pred CeEEEEeCCCCCceEE-eeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
...+++++++| .+++ +.+.++.|.+||..+.........+...+.++++++++.++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 78899999998 7776 557789999999766543322223335688999999988666555 88999999765432110
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 224 (434)
. .........++++++|.++++.. +.|.+|+..+.............+.++++++++ +++++...
T Consensus 103 ~------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~ 169 (270)
T 1rwi_B 103 P------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTD 169 (270)
T ss_dssp C------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGG
T ss_pred e------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECC
Confidence 0 01124567889999998887754 569999766554433222233467889999988 67777777
Q ss_pred CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 225 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
++.|.+||......... ...+...+.+++++++|.++++...++.|.+||.....
T Consensus 170 ~~~i~~~~~~~~~~~~~-------------------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVL-------------------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp GTEEEEECTTTCCEEEC-------------------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCEEEEEecCCCceEee-------------------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 88999999765432110 01223567899999999877777778899999987654
Q ss_pred eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 305 SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
... ........+.+++++++|+++++...++.|++++....+..
T Consensus 225 ~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 225 STV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp CEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred cee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 332 22222256899999999998888888999999999876543
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=1.4e-15 Score=149.00 Aligned_cols=244 Identities=7% Similarity=-0.023 Sum_probs=167.5
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCC-C----cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc------
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMD-G----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT------ 132 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~d-g----~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~------ 132 (434)
+|...+..++||||| ++||.++.+ | .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 455578899999999 777765543 3 8999999999876543222 23678999999999999888766
Q ss_pred ----------EEEeeCCCCCCCCCCCCCCCCCCceeEEEe---cCceEEEeeccCCCEEEEeC-------CeEEEEeCCC
Q 013873 133 ----------VKLWNVPVATLTDSDDSTDNSSEPLAVYVW---KNSFWAVDHQWEGDLFATAG-------AQVDIWNHNR 192 (434)
Q Consensus 133 ----------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~ 192 (434)
|++|++.++.. ........ ...+..+.++|+|..++... ..+.+||+.+
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~-----------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQS-----------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred cccccCCCCEEEEEECCCCcc-----------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 99999976532 11111111 22356889999999877542 3599999876
Q ss_pred ------Cc-ceeeeecCCCceEEEEEcCCCCcEEEEEecC---CcEEEEEccCCCc--ceEEEeeecCceeEEEeeCCCC
Q 013873 193 ------SQ-PINSFQWGTDTVISVRFNPAEPNVLATTASD---RSITLYDLRMSSP--ARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 193 ------~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
+. ....+..+...+.. .|+|++..+++.+..+ +.|.+||+.+... ...+
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l------------------ 329 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL------------------ 329 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE------------------
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec------------------
Confidence 43 35555555555544 4788885555555433 3688888876532 1111
Q ss_pred ccceeeeeCccc--CeEEEEEccCCCEEEEEeCCCc--EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe-e--
Q 013873 261 DEAKCVHMGHES--AVMDIDYSPTGREFVTGSYDRT--IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG-S-- 333 (434)
Q Consensus 261 ~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~-- 333 (434)
..|.. .+..++|++++.++++...|+. |.+||+.+++....+..+ ...+..++++|++..++.. +
T Consensus 330 -------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 330 -------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp -------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECS
T ss_pred -------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCC
Confidence 13322 5778999988888888888885 666787677655555444 4678899999998766533 2
Q ss_pred -CCCcEEEeecCccc
Q 013873 334 -DDTNLRLWKAKASE 347 (434)
Q Consensus 334 -~dg~v~vw~~~~~~ 347 (434)
..+.|++||+.+++
T Consensus 402 ~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEE 416 (710)
T ss_dssp SCCCEEEEEETTSSS
T ss_pred CCCCEEEEEECCCCc
Confidence 35789999998876
No 175
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=5.7e-15 Score=126.66 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=165.8
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+.
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W------------- 69 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELW------------- 69 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEE-------------
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEE-------------
Confidence 889999999999999999999999998766 4789999999999888 34678999998 564332
Q ss_pred EEEec--CceEEEeeccCCCEEEEeCC---eEEEEeCCCCcceeeeecC------CCceEEEEEcCCCCcEEEEEecCCc
Q 013873 159 VYVWK--NSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQWG------TDTVISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
.+... ..+.++.+.++|.++++..+ .+..+|. +++.+..+... ......+++.+++ +++++...++.
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~ 147 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSE 147 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTE
T ss_pred EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCE
Confidence 22221 35667888999999988754 4666665 66666555421 1234456778888 78889999999
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 307 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 307 (434)
|..||.. ++...++. ....+.++...++|+++++++.++.|..+|..+++.+.
T Consensus 148 v~~~d~~-G~~~w~~~--------------------------~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 148 VREIAPN-GQLLNSVK--------------------------LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp EEEECTT-SCEEEEEE--------------------------CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred EEEECCC-CCEEEEEE--------------------------CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 9999987 66554441 12345567788999999999988899999999999887
Q ss_pred EEeccC-----CccEEEEEEcCCCCEEEEeeCC--------CcEEEeec-CcccccccC
Q 013873 308 IYHTKR-----MQRVFCVKFSCDASYVISGSDD--------TNLRLWKA-KASEQLGVL 352 (434)
Q Consensus 308 ~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d--------g~v~vw~~-~~~~~~~~~ 352 (434)
.+.... ...+..++..++|.++++.... +..+++++ .+++.+-.+
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 775321 2347889999999988876311 23355555 355554444
No 176
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=3e-15 Score=132.31 Aligned_cols=247 Identities=10% Similarity=0.051 Sum_probs=168.4
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
.....+++..+ .++++...++.|.+||..+++.+.++. .......+++++++..+++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~~--~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRDG--IGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEETT--EEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEECC--EEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 45677777543 666666778999999999999988886 346788999999885444444889999999987754321
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 223 (434)
......... ......+++ .++.++++. ++.|.++|+.+++.+..+... .....+.++|++ .+++++.
T Consensus 121 i~~g~~~~~-------~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG-~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDME-------SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYN-KMWTITD 190 (328)
T ss_dssp EECTTCCTT-------TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTS-EEEEEBC
T ss_pred EEcCCcccc-------CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCC-CEEEEEC
Confidence 111000000 002234444 455555553 356999999999888777653 345788999988 6666665
Q ss_pred cC----------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 224 SD----------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 224 ~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
.+ +.|.++|..+.+....+. .+.......++|+|+++.|+++..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~------------------------~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFK------------------------FKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEE------------------------CCTTCCCEEEEECTTSCEEEEESS--
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEe------------------------cCCCCCceeEEEecCCCEEEEEcc--
Confidence 54 789999987765443321 011235789999999999888765
Q ss_pred cEEEEeCCCCeeeeEE-eccCCccEEEEEEcC-CCCEEEEe----eCCCcEEEeecCcccccccCC
Q 013873 294 TIRIFQYNGGRSREIY-HTKRMQRVFCVKFSC-DASYVISG----SDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~s~----~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.|.+||..+++..... .........+++++| ++.++++. ..++.|.+||.. ++.+..+.
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 8999999887753211 111135688999999 56666665 568999999998 88877664
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.3e-16 Score=143.65 Aligned_cols=275 Identities=9% Similarity=-0.000 Sum_probs=168.6
Q ss_pred cCCCCCCChhhhhhhHHHHH---HHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE
Q 013873 27 NYDPNLRPQEKAVEYVRALT---AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC 103 (434)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 103 (434)
..+|.+.|..+...+..... .+.+++..++.......++......+.|+|+| ..|+.++.++.|++||+.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEE
Confidence 34566777766654443221 11222333333332223333334448899999 889888888899999999887665
Q ss_pred EeeccCCCeeE-------------------EEEcCCCCeEEEe-----eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 104 QYSGHQGAVRG-------------------LTVSTDGRILVSC-----GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 104 ~~~~h~~~v~~-------------------i~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
.+..+...... +.|+|+++.++.+ ..+..|.+||+.++. ....
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-------------~~~~ 183 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-------------LEVI 183 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-------------EEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-------------EEee
Confidence 55544432222 3467777766654 356789999987653 2333
Q ss_pred EEecCceEEEeecc-CCCEEEEe-C-------CeEEEEeCCCCcceeeeecC-CCceEEEEEcCCCCcEEEEEecC----
Q 013873 160 YVWKNSFWAVDHQW-EGDLFATA-G-------AQVDIWNHNRSQPINSFQWG-TDTVISVRFNPAEPNVLATTASD---- 225 (434)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~-~-------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d---- 225 (434)
......+..+.|+| ++..++.. . ..|.+||+..++........ ...+..+.|+|++..+++++..+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 34556778899999 77755443 2 25888898766543333321 23578899999995444443332
Q ss_pred CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEe--------------
Q 013873 226 RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGS-------------- 290 (434)
Q Consensus 226 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~-------------- 290 (434)
+.|.+||+.++...... ... ... +.|+| +|+++++++
T Consensus 264 ~~l~~~d~~~g~~~~l~--------------------------~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 264 RVIYKANPETLENEEVM--------------------------VMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEEECTTTCCEEEEE--------------------------ECC-SEE-EEEECSSSSEEEEEECCC----------C
T ss_pred ceEEEEECCCCCeEEee--------------------------eCC-CCC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 34999998765432110 011 122 88999 999888765
Q ss_pred --CCCcEEEEeCCCCeeeeEEeccCCc----------cEEEEEEcCCCCEEEEeeC-CCcEEEeecC
Q 013873 291 --YDRTIRIFQYNGGRSREIYHTKRMQ----------RVFCVKFSCDASYVISGSD-DTNLRLWKAK 344 (434)
Q Consensus 291 --~d~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~ 344 (434)
.++.|++||+.++...... .+... .+..++|+|||+.|+.++. ++...+|.+.
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQKLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCCEEEEEETTTTBCCEEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCcEEEEecccCceEEcc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887754332 22211 2566899999998887664 5666666554
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=3.1e-15 Score=133.91 Aligned_cols=246 Identities=9% Similarity=0.101 Sum_probs=154.9
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeecc------CCCee
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH------QGAVR 113 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h------~~~v~ 113 (434)
+++..+..++..+..+..+ .++|+|++ ++|+++. .+++|.+||..+++.+..+... .....
T Consensus 35 v~D~~t~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~ 111 (361)
T 2oiz_A 35 VYDYTNGKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG 111 (361)
T ss_dssp EEETTTCCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG
T ss_pred EEECCCCeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc
Confidence 4444556666677766665 89999999 7787775 3678999999999888877532 34567
Q ss_pred EEEEcCCCCeEEEeeC--CCcEEEeeCCCCCCCCC-CCCCCC--------CCCceeEEEecCceEEEeec----------
Q 013873 114 GLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDS-DDSTDN--------SSEPLAVYVWKNSFWAVDHQ---------- 172 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~---------- 172 (434)
.++|+|+|++|+++.. ++.|.+||+.+++.... ...... ...........+.+..+.+.
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 8999999999998864 58999999988765433 211100 00000111111111111111
Q ss_pred -----------------cCCCEE--EEeCCeEEEEeCCCCcce--eeeecC----------CCceEEEEEcCCCCcEEEE
Q 013873 173 -----------------WEGDLF--ATAGAQVDIWNHNRSQPI--NSFQWG----------TDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 173 -----------------~~~~~~--~~~~~~i~i~d~~~~~~~--~~~~~~----------~~~i~~i~~~~~~~~~l~~ 221 (434)
+++..+ .+.++.+.++|+...... ..+... ......++|+|++..++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 192 SKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp CCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred ccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 222221 222355777777544321 111100 0111126888987555555
Q ss_pred Eec----------CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 222 TAS----------DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 222 ~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
... .+.|.+||+.+.+....+ ..+. +.+++|+|||++|++++.
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i-------------------------~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKTKQRVARI-------------------------PGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTTTEEEEEE-------------------------ECTT--CCEEEEETTTTEEEEECS
T ss_pred EccCCCcccccCCCceEEEEECCCCcEEEEE-------------------------ecCC--eeEEEECCCCCEEEEeCC
Confidence 441 347999998877655544 2333 899999999999998886
Q ss_pred CCcEEEEeCCCC--eeeeEEeccCCccEEEEEEcCCCC
Q 013873 292 DRTIRIFQYNGG--RSREIYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 292 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~ 327 (434)
+.|.+||..++ +.+..+... ......++++|+|+
T Consensus 325 -~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred -CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence 99999999999 777665332 25678899999985
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=5.3e-16 Score=151.11 Aligned_cols=264 Identities=6% Similarity=-0.084 Sum_probs=161.8
Q ss_pred HhhhhccccccccccCCCCCeE---------EEEeC--CCCCce-EEee-eCCCcEEEEeCC--C-CceeEEeec-----
Q 013873 49 KLEKIFARPFIGALDGHRDGIS---------CMAKN--PNYLKG-FFSG-SMDGDIRLWDIA--N-RRTVCQYSG----- 107 (434)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~---------~~~~~--~~~~~~-l~sg-~~dg~i~iwd~~--~-~~~~~~~~~----- 107 (434)
.+|..........+.+|...+. ...|+ ||| .. |+.+ ..+..|++|++. + +. ...+..
T Consensus 50 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg-~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~ 127 (662)
T 3azo_A 50 TLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG-GPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVG 127 (662)
T ss_dssp EEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS-SCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCST
T ss_pred EEEEECCCCCcceeCCCCccccccccccCCccceeeeecCC-CeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCC
Confidence 3444333333455666666665 56565 998 55 5544 346778888876 3 43 444554
Q ss_pred cCCCeeEEEEcCCCCeEEEeeCC----------CcEEEeeCCC------CCCCCCCCCCCCCCCceeEE-EecCceEEEe
Q 013873 108 HQGAVRGLTVSTDGRILVSCGTD----------CTVKLWNVPV------ATLTDSDDSTDNSSEPLAVY-VWKNSFWAVD 170 (434)
Q Consensus 108 h~~~v~~i~~~~~~~~l~s~~~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (434)
|...+.+++|+|||+.|++++.+ ..|.+||+.+ +... ... .....+..++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~ 194 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-------------ELSDDAHRFVTGPR 194 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-------------ESSCSCSSEECCCE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-------------EEEecCCCcccCce
Confidence 66788999999999999988877 5899999976 3221 111 1234556788
Q ss_pred eccCCCEEEEeC----------CeEEEEeCC-CC---cceeeeecCCCceEEEEEcCCCCcEEEEEecCCc--EEEEEcc
Q 013873 171 HQWEGDLFATAG----------AQVDIWNHN-RS---QPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLR 234 (434)
Q Consensus 171 ~~~~~~~~~~~~----------~~i~i~d~~-~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~iwd~~ 234 (434)
|+|||+.++... .+|.+||+. ++ +.......+...+..+.|+|+|. +++++..++. |.+||+.
T Consensus 195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~ 273 (662)
T 3azo_A 195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPA 273 (662)
T ss_dssp ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTT
T ss_pred ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECC
Confidence 999999887543 259999998 56 33344444567899999999995 8888888884 5555543
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE--eCCCCeeeeEEecc
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF--QYNGGRSREIYHTK 312 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~ 312 (434)
++... .+. ..... ... ..-...+..++|+|+++++++++. +.+++| |+.++.. ..+..+
T Consensus 274 ~~~~~-~l~-~~~~~----------~~~-----p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l~~~ 334 (662)
T 3azo_A 274 TGAAT-QLC-RREEE----------FAG-----PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDAAGP 334 (662)
T ss_dssp TCCEE-ESS-CCSSB----------SSC-----CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EECCSS
T ss_pred CCcee-ecc-ccccc----------ccC-----ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEecCC
Confidence 33221 110 00000 000 000011456899999999999998 999999 6666653 334333
Q ss_pred CCccEEEE-EEcCCCCEEEEeeCCC--cEEEeecCcccc
Q 013873 313 RMQRVFCV-KFSCDASYVISGSDDT--NLRLWKAKASEQ 348 (434)
Q Consensus 313 ~~~~v~~~-~~s~~~~~l~s~~~dg--~v~vw~~~~~~~ 348 (434)
...+..+ +++++.-++++++.+. .|.+||+.+++.
T Consensus 335 -~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 335 -WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp -CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 3566666 4443333344455554 455556656654
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=3.4e-15 Score=133.33 Aligned_cols=221 Identities=10% Similarity=0.062 Sum_probs=147.6
Q ss_pred CCeEEEEeCCCCCceEEee---------eCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC---Cc--
Q 013873 67 DGISCMAKNPNYLKGFFSG---------SMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CT-- 132 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~-- 132 (434)
..+...++ +| ..++.. ..++.|++||+.+++.. .+ ..+..+.|+|+|++|+.++.+ +.
T Consensus 15 ~~~~~~~~--dG-~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KG-ELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ET-TEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CC-cEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 45677777 77 555543 23678999999887653 33 468889999999999887654 33
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----------------------------C
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------------------------A 183 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~ 183 (434)
|.+|++.++. ......... +..+.|+|+|..++... .
T Consensus 87 l~~~~~~~g~-------------~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 87 IWVADLETLS-------------SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp EEEEETTTTE-------------EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEE
T ss_pred EEEEECCCCc-------------eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 7777876542 233333334 88999999998776653 3
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC-------cEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-------SITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
.|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++ ...+|.+.++ ....+
T Consensus 153 ~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l-------------- 213 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKM-------------- 213 (347)
T ss_dssp EEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-EEEEE--------------
T ss_pred eEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-ceEEe--------------
Confidence 489999988876444544 3 78899999988 666665442 3344444311 11111
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCeeeeEEeccCCccEEE-EEEcCCCC
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD--------RTIRIFQYNGGRSREIYHTKRMQRVFC-VKFSCDAS 327 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~ 327 (434)
..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++.. .+...+...+.. +.|+ |+
T Consensus 214 -----------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 214 -----------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp -----------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEEEEET-TE-
T ss_pred -----------ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccccCCcccCCccEEc-Cc-
Confidence 122 344444 9999998887754 3688888 45433 333333466776 8999 88
Q ss_pred EEEEeeCCCcEEEeecCcccc
Q 013873 328 YVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 328 ~l~s~~~dg~v~vw~~~~~~~ 348 (434)
++++++.+|.++|| +.+++.
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSE
T ss_pred EEEEEecCCcEEEE-EcCCce
Confidence 88999999999999 875543
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=2.1e-15 Score=147.32 Aligned_cols=244 Identities=8% Similarity=-0.033 Sum_probs=163.4
Q ss_pred cCCCCCeEEEEeCCCCCceEE-----eeeCCCcEEEEeCCCCceeEEeeccCCCe--eEEEEcCCCCeEEEeeCCCc---
Q 013873 63 DGHRDGISCMAKNPNYLKGFF-----SGSMDGDIRLWDIANRRTVCQYSGHQGAV--RGLTVSTDGRILVSCGTDCT--- 132 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~-----sg~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~s~~~dg~--- 132 (434)
.+|...+..++||||| ++|| .|+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 3566689999999999 7777 45556789999999988651 1122222 67899999999999988776
Q ss_pred ----------EEEeeCCCCCCCCCCCCCCCCCCceeEEE---ecCceEEEeeccCCCEEEEeC--C----eEEEEeCCCC
Q 013873 133 ----------VKLWNVPVATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAG--A----QVDIWNHNRS 193 (434)
Q Consensus 133 ----------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~----~i~i~d~~~~ 193 (434)
|++|++.++.. ....... +...+..+.++|+|..++... + .|.+|+..++
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~-----------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPS-----------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGG-----------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred ccccCCCCCEEEEEECCCCch-----------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 99999977632 1111111 123577889999998776543 3 4777776555
Q ss_pred cceeeeecCCCceEEEEEcCCCCcEEEEEe---cCCcEEEEEccCCCcc--eEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 194 QPINSFQWGTDTVISVRFNPAEPNVLATTA---SDRSITLYDLRMSSPA--RKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
. ...+..+...+....+ +++. +++.+. .++.|.+||+.+.... ..+ ..
T Consensus 263 ~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l------------------------~~ 315 (695)
T 2bkl_A 263 D-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI------------------------VP 315 (695)
T ss_dssp S-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE------------------------EC
T ss_pred c-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE------------------------ec
Confidence 4 3444445555566666 6664 555544 2578999998765421 111 11
Q ss_pred Cc-ccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeeeEEeccCCccEEEEEEcCCCCEEEE----eeCCCcEEEee
Q 013873 269 GH-ESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVIS----GSDDTNLRLWK 342 (434)
Q Consensus 269 ~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s----~~~dg~v~vw~ 342 (434)
.+ ...+..++|+ ++.++++...|+..++|.+. .+.....+..+....+..++++|++..++. ....+.|++||
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 22 4457788888 67788889999988887654 344444443333467888899999987763 23457899999
Q ss_pred cCcccc
Q 013873 343 AKASEQ 348 (434)
Q Consensus 343 ~~~~~~ 348 (434)
+.+++.
T Consensus 395 ~~~g~~ 400 (695)
T 2bkl_A 395 VSTGKS 400 (695)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 987653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=5.4e-15 Score=131.24 Aligned_cols=241 Identities=8% Similarity=0.037 Sum_probs=165.8
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
..|.+++|++++ ..++..+.++.++.| .+.....+..+...+.+++|++++++++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--- 78 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--- 78 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---
T ss_pred cccceeeecCCc-cceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---
Confidence 457788899987 667777788899999 3455666777777889999999999777888899999999876532
Q ss_pred CCCCCCCCCceeEE-EecCceEEEeeccCCCEEEEeC------CeEEEEeCCCCcceeeee--cCCCceEEEEEcCCCCc
Q 013873 147 DDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPN 217 (434)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~ 217 (434)
.... .....+.++++++++.++++.. +.|.+||..++.....+. .....+.+++++|++ .
T Consensus 79 ----------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~ 147 (333)
T 2dg1_A 79 ----------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-G 147 (333)
T ss_dssp ----------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-C
T ss_pred ----------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-C
Confidence 1111 2345788999999999887764 369999988776543332 234568999999988 6
Q ss_pred EEEEEec------CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE-Ee
Q 013873 218 VLATTAS------DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT-GS 290 (434)
Q Consensus 218 ~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~ 290 (434)
++++... .+.|..||....... .+ ..+...+..++|+|+|+.|+. .+
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~-------------------------~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI-------------------------IQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEE-EE-------------------------EEEESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEE-Ee-------------------------ecCCCcccceEECCCCCEEEEEeC
Confidence 6665543 234444444322211 11 112235788999999986654 45
Q ss_pred CCCcEEEEeCCC-CeeeeE-----E-eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 291 YDRTIRIFQYNG-GRSREI-----Y-HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 291 ~d~~i~iwd~~~-~~~~~~-----~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.++.|.+||+.+ +..... . .......+..++++++|+++++...++.|.+|+. .++.+..+
T Consensus 202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~ 269 (333)
T 2dg1_A 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI 269 (333)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence 578999999964 332211 1 1111146788999999998888777889999998 45554443
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=8.9e-15 Score=130.61 Aligned_cols=219 Identities=11% Similarity=0.097 Sum_probs=145.0
Q ss_pred CCeEEEEeCCCCCceEEeeeCC---C--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC-----------
Q 013873 67 DGISCMAKNPNYLKGFFSGSMD---G--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD----------- 130 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~d---g--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----------- 130 (434)
..+.+++|+||| ..|+.++.+ + .|++||+.+++....... .. +..+.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 568899999999 777776643 2 488889988776555443 34 9999999999988887642
Q ss_pred ----------------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------C---
Q 013873 131 ----------------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------A--- 183 (434)
Q Consensus 131 ----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--- 183 (434)
..|.+||+.++... ..... . .+..+.|+|+| +++++. .
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~------------~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVI------------EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEE------------EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEE------------eeecC-C-CcccccCCCCe-EEEEEecccccccccccc
Confidence 56888998765310 12222 3 67788999999 766652 1
Q ss_pred eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC--------CcEEEEEccCCCcceEEEeeecCceeEEEe
Q 013873 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD--------RSITLYDLRMSSPARKVIMRANEDCNCYSY 255 (434)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
.|.++| +++ ...+..+ ..+..+ +|+|. .|+.++.+ ..|.+|| ++.. .
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~--------------- 255 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEV-M--------------- 255 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCE-E---------------
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--CCce-E---------------
Confidence 355555 443 3333333 444444 88885 44444433 3566666 2211 1
Q ss_pred eCCCCccceeeeeCcccCeEE-EEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 256 DSRKLDEAKCVHMGHESAVMD-IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
....++...+.. +.|+ +| ++++++.++.+++| +.+++..... .+ ...|.+++|+| .++++++.
T Consensus 256 ---------~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~-~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 256 ---------GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KG-RHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp ---------ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CS-SSEEEEEEESS--SEEEEEEC
T ss_pred ---------eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cC-CCeEEeeeeeC--cEEEEEcC
Confidence 112245567776 8999 88 99999999999999 8765543333 33 47899999999 67777777
Q ss_pred CCcE-EEeecC
Q 013873 335 DTNL-RLWKAK 344 (434)
Q Consensus 335 dg~v-~vw~~~ 344 (434)
++.. .+|.+.
T Consensus 320 ~~~~~~l~~~~ 330 (347)
T 2gop_A 320 ATRLRELFTWD 330 (347)
T ss_dssp SSSCCEEEEES
T ss_pred CCChHHheEeC
Confidence 7665 777776
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1e-13 Score=130.48 Aligned_cols=228 Identities=15% Similarity=0.107 Sum_probs=166.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC--CCCCCCCCCCCCCCCCce
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--VATLTDSDDSTDNSSEPL 157 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~ 157 (434)
.++++...+++|.++|..+++.+..+.. ...+..+.|+|+|+++++++.|+.|.+||+. +. ...
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-------------~~v 233 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-------------TTV 233 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-------------CEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-------------cEe
Confidence 5667777889999999999999888873 3467799999999999999999999999985 33 233
Q ss_pred eEEEecCceEEEeec----cCCCEEEEeC---CeEEEEeCCCCcceeeeecC-----------CCceEEEEEcCCCCcEE
Q 013873 158 AVYVWKNSFWAVDHQ----WEGDLFATAG---AQVDIWNHNRSQPINSFQWG-----------TDTVISVRFNPAEPNVL 219 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~----~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~~l 219 (434)
...........++++ |+|+++++++ +.+.++|..+.+.+..+... ...+..+..+++++.++
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 333334456788999 6999888775 67999999999888776532 12577888898887777
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iw 298 (434)
+....+|.|.++|........... ........++.|+|+|++|+++. .++.|.++
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~------------------------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTE------------------------ISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEE------------------------EECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred EEecCCCeEEEEecCCCccceeee------------------------eeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 777788999999987654221110 12233466789999999977665 57889999
Q ss_pred eCCCCeeeeEEec-cC-CccEEEEE-EcCCCC-EEEEee-CCCcEEEeecCc
Q 013873 299 QYNGGRSREIYHT-KR-MQRVFCVK-FSCDAS-YVISGS-DDTNLRLWKAKA 345 (434)
Q Consensus 299 d~~~~~~~~~~~~-~~-~~~v~~~~-~s~~~~-~l~s~~-~dg~v~vw~~~~ 345 (434)
|+.+++....... .. ..+-..+. ++|++. +.+++. .++.|.+++..+
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 9999988766654 21 01111222 588744 444543 468999999987
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.69 E-value=8.4e-14 Score=122.39 Aligned_cols=250 Identities=12% Similarity=0.178 Sum_probs=165.7
Q ss_pred ccCCCCCeEEEEeCCCCCceEEe-------eeCCCcEEEEeCCCCceeEEee----ccCCCeeEEEEcCC-CCeEEEeeC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFS-------GSMDGDIRLWDIANRRTVCQYS----GHQGAVRGLTVSTD-GRILVSCGT 129 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~s-------g~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~i~~~~~-~~~l~s~~~ 129 (434)
+.+.-....+++|++++ .++++ +..++.|.+||..+++...... ++...+.+++++++ +.++++ +.
T Consensus 13 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp EECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred hhccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-EC
Confidence 34445567899999988 77777 6778999999988776543221 24567899999999 664544 44
Q ss_pred CCcEEEeeCCCCCCCCC-CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----------------CeEEEEeCC
Q 013873 130 DCTVKLWNVPVATLTDS-DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------------AQVDIWNHN 191 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~i~i~d~~ 191 (434)
.+.|.+||.. +..... ..... . .....+..++++++|.++++.. +.|..|+..
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~--~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSE--G------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTT--S------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred CCCEEEEeCC-CCEEEEEeccCC--C------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 4578899987 543211 10000 0 1123467889999998888765 246777765
Q ss_pred CCcceeeeecCCCceEEEEEc----CCCCcEEEEEecCCcEEEEEccC-CCcceEEEeeecCceeEEEeeCCCCccceee
Q 013873 192 RSQPINSFQWGTDTVISVRFN----PAEPNVLATTASDRSITLYDLRM-SSPARKVIMRANEDCNCYSYDSRKLDEAKCV 266 (434)
Q Consensus 192 ~~~~~~~~~~~~~~i~~i~~~----~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
++... +..+......++++ |++..++++...++.|.+||+.. +....... ...
T Consensus 162 -g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~--------------------~~~ 219 (314)
T 1pjx_A 162 -GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV--------------------WGH 219 (314)
T ss_dssp -SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE--------------------EEE
T ss_pred -CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE--------------------EEE
Confidence 44332 22233456789999 98744555556788999999762 21110000 001
Q ss_pred eeCcc-cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE-EeeCCCcEEEeecC
Q 013873 267 HMGHE-SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI-SGSDDTNLRLWKAK 344 (434)
Q Consensus 267 ~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~vw~~~ 344 (434)
+..+. ..+..++++++|+++++...++.|.+||..+++....+..+. ..+.+++|+|+++.|+ +...++.|..|++.
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 11232 457789999999988888788999999998676655554332 6789999999999554 45567889999986
Q ss_pred c
Q 013873 345 A 345 (434)
Q Consensus 345 ~ 345 (434)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 5
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=2.4e-13 Score=121.70 Aligned_cols=263 Identities=9% Similarity=0.024 Sum_probs=173.9
Q ss_pred EeCCCCCceEEeeeC--CC---cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEee
Q 013873 73 AKNPNYLKGFFSGSM--DG---DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWN 137 (434)
Q Consensus 73 ~~~~~~~~~l~sg~~--dg---~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iwd 137 (434)
...|++ .++++... .+ +|.+||..+++.+..+.....+ .+.++|||++++++. .++.|.+||
T Consensus 27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 344666 55655543 23 8899999999988887654444 899999999999885 367899999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceee-eecCCCceEEEEEc
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINS-FQWGTDTVISVRFN 212 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~ 212 (434)
..+.+.......... .. .........+.++|+|++++..+ +.|.++| .+++.+.. +.... ++.+.
T Consensus 104 ~~t~~~~~~i~~~~~----~~-~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~ 173 (373)
T 2mad_H 104 PVTFLPIADIELPDA----PR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIH 173 (373)
T ss_pred CCCCcEEEEEECCCc----cc-cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEE
Confidence 976644322111100 00 00012234788999999887653 4599999 99988777 54321 35566
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEE------------------------eeecCceeEEEeeCCCCccc-eeee
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVI------------------------MRANEDCNCYSYDSRKLDEA-KCVH 267 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~-~~~~ 267 (434)
|.+...+++.+.||.+.++|. ++....... ......+.++..|....... ...+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 777677888888999999998 554432110 00112234555554322110 0000
Q ss_pred e----------CcccCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC
Q 013873 268 M----------GHESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 268 ~----------~~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 327 (434)
. ........++++|+++.++++.. ++.|.++|+.+++....+... ....+++|+|||+
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGG 330 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCC
Confidence 0 01223445789999998877653 357999999999988877554 3578999999999
Q ss_pred -EEEEee-CCCcEEEeecCccccccc
Q 013873 328 -YVISGS-DDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 328 -~l~s~~-~dg~v~vw~~~~~~~~~~ 351 (434)
+++++. .++.|.+||+.+++.+..
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCCEEee
Confidence 777777 589999999999998876
No 187
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=1.8e-15 Score=148.97 Aligned_cols=272 Identities=13% Similarity=0.061 Sum_probs=168.9
Q ss_pred HHHHHhhhhccccccccccCCCCC-----eEEEEeCCCCCceEEeeeCC---------CcEEEEeCCCCceeEEeeccCC
Q 013873 45 LTAAKLEKIFARPFIGALDGHRDG-----ISCMAKNPNYLKGFFSGSMD---------GDIRLWDIANRRTVCQYSGHQG 110 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~-----V~~~~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~h~~ 110 (434)
...+.+|++.++.....+.+|... ...++||||| ++|+.++.+ +.+.+||+.+++.. .+..|.+
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~ 112 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPN 112 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCC
Confidence 345677887777776667777643 2447889999 888888765 66789999998754 4666788
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEec---------CceEEEeeccCCCEEEEe
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK---------NSFWAVDHQWEGDLFATA 181 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 181 (434)
.+...+|||||+.||.+. |+.|.+|++.++......... .......... .....+.|+|||+.|+..
T Consensus 113 ~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g---~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 113 NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG---KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC---BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC---CccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 999999999999999874 689999999876532211100 0000010000 222457899999987764
Q ss_pred C--------------------------------------CeEEEEeCCC---Cc--ceeeee------cCCCceEEEEEc
Q 013873 182 G--------------------------------------AQVDIWNHNR---SQ--PINSFQ------WGTDTVISVRFN 212 (434)
Q Consensus 182 ~--------------------------------------~~i~i~d~~~---~~--~~~~~~------~~~~~i~~i~~~ 212 (434)
. ..|.+||+.+ ++ ....+. .+...+..++|+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 1 0478899988 63 222333 266789999999
Q ss_pred CCCCcEEEEEec----CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE-----EEEEccCC
Q 013873 213 PAEPNVLATTAS----DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM-----DIDYSPTG 283 (434)
Q Consensus 213 ~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~sp~~ 283 (434)
|++ .+++.... +..|.+||+.++....... ........+|...+. .++|+|||
T Consensus 269 pdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~-----------------~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 269 TQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCL-----------------VARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp ETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEEC-----------------GGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCC-eEEEEEeCCCCCEEEEEEEECCCCcccccee-----------------EEEEeeeccCCceEccCcCCCceEcCCC
Confidence 998 55554432 3369999998776210000 000001123444433 67899999
Q ss_pred CEEE-EEeC-CC--cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEE-eeC----CCcEEEeec
Q 013873 284 REFV-TGSY-DR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS-GSD----DTNLRLWKA 343 (434)
Q Consensus 284 ~~l~-~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~----dg~v~vw~~ 343 (434)
+.|+ ..+. +| .|++||+.++...... .+. ..+..+.+ +|++.|+. ++. .+...||.+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g~-~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFIT-KGT-WEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESC-CSS-SCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecc-cCC-EEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 9877 5553 33 5888998877654333 222 44555442 34665554 433 244455544
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=6.3e-13 Score=125.08 Aligned_cols=298 Identities=9% Similarity=0.032 Sum_probs=190.5
Q ss_pred hhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--CCceeEEeeccCCCeeEEEEc----CCCCeE
Q 013873 51 EKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVS----TDGRIL 124 (434)
Q Consensus 51 ~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~i~~~----~~~~~l 124 (434)
.+..+...+..+.. ...+..+.|+|+| .++++++.|+.|.+||+. +++.+..+... .....++|+ |+|+++
T Consensus 182 iD~~t~~v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l 258 (567)
T 1qks_A 182 IDGSTYEIKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYA 258 (567)
T ss_dssp EETTTCCEEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEE
T ss_pred EECCCCeEEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEE
Confidence 33344445555542 2356789999999 889999999999999995 77888777643 346789999 699988
Q ss_pred EEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe---CCeEEEEeCCCCccee--e
Q 013873 125 VSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQPIN--S 198 (434)
Q Consensus 125 ~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~--~ 198 (434)
+++.. +++|.++|..+.+.+............ ..+.....+..+..++++..++.. ++.|.++|....+.+. .
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~-~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~ 337 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 337 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEecccccccc-ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence 87765 599999998776543221110000000 001112245667777776655443 3679999987654322 2
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEe-e----------------------e-cCceeEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-R----------------------A-NEDCNCYS 254 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~----------------------~-~~~~~~~~ 254 (434)
+. .......+.|+|++..++++...++.|.++|+.+.+....+.. . . ..++.+.+
T Consensus 338 i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 338 IS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp EE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred ee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEE
Confidence 22 2345678899999966666666789999999887654433322 0 1 12234444
Q ss_pred eeCCCC------ccceeeeeCcccCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCCC-----eee-eEEec----
Q 013873 255 YDSRKL------DEAKCVHMGHESAVMDIDYSPTGREFVTGSY-------DRTIRIFQYNGG-----RSR-EIYHT---- 311 (434)
Q Consensus 255 ~~~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~-----~~~-~~~~~---- 311 (434)
++.... .............-..+..+|+++++.+... .+.|.++|+.+. ... ..+..
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 444331 1222333332233345778999999888763 458999999876 211 22221
Q ss_pred ---cCCccEEEEEEcCCCCEEEEee-----CCCcEEEeecCcccccccCC
Q 013873 312 ---KRMQRVFCVKFSCDASYVISGS-----DDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 312 ---~~~~~v~~~~~s~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~ 353 (434)
.....+..+.|+|+|+.+..+. .++.|.|+|..+++++..+.
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 1235788999999999887663 37999999999999887765
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=6.3e-13 Score=115.81 Aligned_cols=241 Identities=9% Similarity=0.037 Sum_probs=167.8
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE-eeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
+..+...+.+++++++| .++++...++.|.+||.. +..... +..+...+.++++.+++.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 44566789999999998 777766667899999988 544322 22345679999999999888777768899999875
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCc
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~ 217 (434)
+... ..........+..+.+.+++.++++.. +.|..||. +++.... .......+..+++.+++ .
T Consensus 87 g~~~-----------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~ 153 (299)
T 2z2n_A 87 GIIK-----------EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-A 153 (299)
T ss_dssp SCEE-----------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-C
T ss_pred CcEE-----------EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-C
Confidence 2110 000000233567888999998888764 57999998 4443322 22234568899999988 6
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
++++...++.|..||. ++.... +. ...+...+.+++++++|+++++...++.|.+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~-~~-----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITE-FK-----------------------IPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEE-EE-----------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEEE-ee-----------------------CCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 7777667788999987 432211 10 0123446789999999997777767889999
Q ss_pred EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 298 FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
||. ++.............+.+++++++|+++++...++.|.+|+..
T Consensus 209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 999 6654332222233578999999999977766677899999983
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=3.2e-13 Score=119.24 Aligned_cols=267 Identities=12% Similarity=0.110 Sum_probs=174.0
Q ss_pred EEeCCCCCceEEeeeC-----CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEe
Q 013873 72 MAKNPNYLKGFFSGSM-----DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLW 136 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iw 136 (434)
....|++ ..++.... ++.|.++|..+++.+..+..-..+ .+.++|+|++++++. .++.|.+|
T Consensus 38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 4456887 56665543 679999999999999988755555 499999999888775 36789999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEc
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 212 (434)
|..+.+........... ..........+.++|+|+.+...+ +.|.++|+.+++.+..+.... +..+.
T Consensus 115 D~~t~~v~~~I~v~~g~-----r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~ 185 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAP-----RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIF 185 (386)
T ss_dssp CTTTCCEEEEEEETTCC-----CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEE
T ss_pred ECCCCeEEEEEECCCcc-----ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceee
Confidence 99887532211100000 000011345688999999776553 469999999999988886422 12223
Q ss_pred CCCCcEEEEEecCCcEEEEEccC-CCcce------------------------EEEeeecCceeEEEeeCCCCcc-ceee
Q 013873 213 PAEPNVLATTASDRSITLYDLRM-SSPAR------------------------KVIMRANEDCNCYSYDSRKLDE-AKCV 266 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 266 (434)
|.+...|++.+.||.+.+.++.. +.... ++. ..+..+.++.+|...... ....
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecc
Confidence 44445566666777777777654 22110 011 122344566666543221 1100
Q ss_pred ee----------CcccCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC
Q 013873 267 HM----------GHESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326 (434)
Q Consensus 267 ~~----------~~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 326 (434)
.. -.......++++|+++.++.... .+.|.++|+.+++.+..+... ..+.++++++|+
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~ 342 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDE 342 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSS
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCC
Confidence 00 01223345778999998877643 257999999999998888665 468899999999
Q ss_pred C-EEEEee-CCCcEEEeecCcccccccCC
Q 013873 327 S-YVISGS-DDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 327 ~-~l~s~~-~dg~v~vw~~~~~~~~~~~~ 353 (434)
+ +|+++. .++.|.++|..+++.+.++.
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 7 666654 58999999999999887775
No 191
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.62 E-value=1.9e-12 Score=112.66 Aligned_cols=239 Identities=9% Similarity=0.013 Sum_probs=157.8
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
..+..---+..|+|++..++++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||..++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 344455678899997547778888889999999987765 3333 4578999999999985554 4 5689999987664
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----------CeEEEEeCCCCcceeeeecCCCceEEEEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 211 (434)
......... . .....+..+.++++|.++++.. ....+|.+.....+..+..+......++|
T Consensus 85 ~~~~~~~~~--~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 85 AVVLATVDN--D------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDW 156 (297)
T ss_dssp EEEEEECCT--T------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEE
T ss_pred EEEEEecCC--C------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEE
Confidence 311100000 0 0123467889999999777642 22344444322223223333445688999
Q ss_pred cCCCCcEEEEEecCCcEEEEEcc--CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 212 NPAEPNVLATTASDRSITLYDLR--MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+|++..++++.+.++.|..||+. ++....... ...+..+...+..++++++|++.++.
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~--------------------~~~~~~~~~~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS--------------------VYKLEKEEQIPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE--------------------EEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE--------------------EEECCCCCCCCCeeEECCCCCEEEEE
Confidence 99996666777778999999974 332211100 00111233567889999999988888
Q ss_pred eCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEc-CCCCEEEEeeC
Q 013873 290 SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS-CDASYVISGSD 334 (434)
Q Consensus 290 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 334 (434)
..++.|..||..+++....+..+. ..+++++|. |+++.|+.++.
T Consensus 217 ~~~~~v~~~d~~tG~~~~~i~~p~-~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 217 YNGGRVIRLDPVTGKRLQTVKLPV-DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ETTTEEEEECTTTCCEEEEEECSS-SBEEEEEEESGGGCEEEEEEB
T ss_pred cCCCEEEEEcCCCceEEEEEECCC-CCceEEEEeCCCCCEEEEEcC
Confidence 778899999999888877775543 578999998 88887665543
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=1.3e-13 Score=121.85 Aligned_cols=220 Identities=6% Similarity=-0.043 Sum_probs=156.8
Q ss_pred eCCCcEEEEeCCCCceeEEee------ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 86 SMDGDIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 86 ~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
+.+++|.+||..+++....+. ........+.+. ++..+++...++.|.+||..+++.. ..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------------~~ 79 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------------GR 79 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------------EE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-------------EE
Confidence 348899999999988765441 122346777774 3455556666799999999877432 22
Q ss_pred EEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcceeeeecCC-----CceEEEEEcCCCCcEEEEEe-cCCcEEEE
Q 013873 160 YVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGT-----DTVISVRFNPAEPNVLATTA-SDRSITLY 231 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~-~dg~i~iw 231 (434)
.........+++++++.++++. ++.|.+||..+++....+.... .....+++ . +..++++.. .++.|.+|
T Consensus 80 i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 80 ITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp EECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEE
T ss_pred cCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEE
Confidence 2334566788888888777776 4679999999998777666433 14556777 3 435666554 48899999
Q ss_pred EccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC----------CcEEEEeCC
Q 013873 232 DLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD----------RTIRIFQYN 301 (434)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~ 301 (434)
|+.+.+....+. .......++++|+|++++++..+ +.|.+||..
T Consensus 158 D~~t~~~~~~i~--------------------------~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 158 DTETDKVVDELT--------------------------IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTTTEEEEEEE--------------------------CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCCCeEEEEEE--------------------------cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 998876554431 11234578899999987777655 789999999
Q ss_pred CCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 302 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
+++....+..........++|+|++++|+++.. .|.+||..+++..
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 988776665432246889999999999888765 8999999887754
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=4.6e-12 Score=110.30 Aligned_cols=238 Identities=7% Similarity=-0.042 Sum_probs=161.7
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
+...+.+++++++| .++++...++.|..||.. ++.. ..+......+.++++.+++.++++...++.|..||. ++..
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 45789999999998 777777668899999976 3321 222234567899999999988877777889999997 4322
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCcEEE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
... ...........+++.+++.++++.. +.|..||. +++.... .......+.++++.+++ .+++
T Consensus 132 ~~~-----------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v 198 (299)
T 2z2n_A 132 REY-----------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWF 198 (299)
T ss_dssp EEE-----------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEE
T ss_pred EEe-----------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEE
Confidence 100 0000123567888999998888764 57999998 5554332 22334568899999987 6777
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+...++.|..||. ++... .+ ....+...+.+++++++|+++++...++.|..||.
T Consensus 199 ~~~~~~~i~~~~~-~g~~~-~~-----------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 199 VEIIGNKIGRITT-SGEIT-EF-----------------------KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EETTTTEEEEECT-TCCEE-EE-----------------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EccCCceEEEECC-CCcEE-EE-----------------------ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 6666889999997 43321 11 01124456889999999997776667889999998
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcc
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
++.............+.++++ +++.+.++.. .+.|..++..++
T Consensus 254 -~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 254 -NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred -CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 454332222223357899999 8888777655 567777777654
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.1e-13 Score=136.30 Aligned_cols=243 Identities=9% Similarity=0.059 Sum_probs=154.1
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCC-C----cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc-------
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMD-G----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT------- 132 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~d-g----~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~------- 132 (434)
|...+..++||||| ++||.++.+ | .|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 33467889999999 777765443 4 599999999987543 212223467899999 98888877654
Q ss_pred -------EEEeeCCCCCCCCCCCCCCCCCCceeEEEec---CceEEEeeccCCCEEEEeC-------CeEEEEeCCCC--
Q 013873 133 -------VKLWNVPVATLTDSDDSTDNSSEPLAVYVWK---NSFWAVDHQWEGDLFATAG-------AQVDIWNHNRS-- 193 (434)
Q Consensus 133 -------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~-- 193 (434)
|.+|++.++.. ......... ..+..+.++|+|+.++... ..|.+||+.++
T Consensus 238 ~~~~~~~v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQS-----------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp -CCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred cCCCCCEEEEEECCCCch-----------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 88899865531 111222211 1367889999998766543 26999999876
Q ss_pred cceeeeecCCCceEEEEEcCCCCcEEEEEec---CCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 194 QPINSFQWGTDTVISVRFNPAEPNVLATTAS---DRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
+....+..+...+.... +|++..+++.... ++.|.+||+.... .... +...
T Consensus 307 ~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~------------------------l~~~ 361 (741)
T 1yr2_A 307 GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT------------------------VVPE 361 (741)
T ss_dssp CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE------------------------EECC
T ss_pred cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE------------------------EecC
Confidence 31444544444444443 4777444444332 3458888876542 1111 1223
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeeeEEeccCCccEEEEEEcCCCCEEEE----eeCCCcEEEeecC
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVIS----GSDDTNLRLWKAK 344 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s----~~~dg~v~vw~~~ 344 (434)
+...+.+++++ ++.++++...|+..++|.+. .+.....+.......+..++++|+++.|+. ....+.|++||+.
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 44456677777 56678888889987777554 344444443333467889999999876552 2345889999998
Q ss_pred ccc
Q 013873 345 ASE 347 (434)
Q Consensus 345 ~~~ 347 (434)
+++
T Consensus 441 tg~ 443 (741)
T 1yr2_A 441 TAK 443 (741)
T ss_dssp TTE
T ss_pred CCc
Confidence 766
No 195
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=9.4e-13 Score=114.00 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=139.3
Q ss_pred CCCCCeEEEEe-CCCCCceEEeeeC-CCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCC
Q 013873 64 GHRDGISCMAK-NPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (434)
Q Consensus 64 ~h~~~V~~~~~-~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (434)
+|...+.++++ .+++ .++++... ++.|.+|| .+++.+..+. .+...+.+++++++|+++++...++.|.+||...
T Consensus 74 ~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG 151 (286)
T ss_dssp TCBSSEEEEEEETTTT-EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred ccccCceEEEEEcCCC-eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC
Confidence 45678999999 5666 66666543 78999999 5677666664 2345789999999998888777789999999642
Q ss_pred CCCCCCCCCCCCCCCceeEEE---ecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecC--CCceEEEEEcC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--TDTVISVRFNP 213 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~ 213 (434)
. ...... .......+++++++.++++.. +.|.+||.. ++.+..+... ...+..+++++
T Consensus 152 ~--------------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 152 N--------------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp C--------------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT
T ss_pred C--------------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC
Confidence 2 111111 123567899999999887764 579999974 4555555433 25688999999
Q ss_pred CCCcEEEEEecCC-cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 214 AEPNVLATTASDR-SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 214 ~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
++ +++++...++ .|.+||.. +.....+. .......+.+++++|+|+++++ +.|
T Consensus 217 ~G-~l~v~~~~~~~~i~~~~~~-g~~~~~~~-----------------------~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 217 NG-EILIADNHNNFNLTIFTQD-GQLISALE-----------------------SKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp TC-CEEEEECSSSCEEEEECTT-SCEEEEEE-----------------------ESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred CC-CEEEEeCCCCEEEEEECCC-CCEEEEEc-----------------------ccCCCCcceeEEECCCCcEEEE-CCC
Confidence 88 7888877775 99999954 22222221 0012234778999999987776 679
Q ss_pred CcEEEEeCCCC
Q 013873 293 RTIRIFQYNGG 303 (434)
Q Consensus 293 ~~i~iwd~~~~ 303 (434)
+.|++|++...
T Consensus 271 ~~v~v~~~~~~ 281 (286)
T 1q7f_A 271 YRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEECSCC
T ss_pred CeEEEEEcccc
Confidence 99999998654
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=2e-12 Score=117.51 Aligned_cols=254 Identities=11% Similarity=0.037 Sum_probs=163.6
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC--cEEEeeCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLWNVPVATL 143 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~v~iwd~~~~~~ 143 (434)
-.....++|++++ .++++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+|+......
T Consensus 130 ~~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 3578899999998 7777777789999999988776655543 23334 99999999999888766 788888754421
Q ss_pred CCCCCCCCCCCCceeEEE-ecCceEEEeecc-CCCEEEEeC-CeEEEEeCCCCcceee----eecCCCce-E-EEEEcCC
Q 013873 144 TDSDDSTDNSSEPLAVYV-WKNSFWAVDHQW-EGDLFATAG-AQVDIWNHNRSQPINS----FQWGTDTV-I-SVRFNPA 214 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~i~i~d~~~~~~~~~----~~~~~~~i-~-~i~~~~~ 214 (434)
.... ..... .......++++| ++.++++.. +.|..||..++..... .......- . .++|+|+
T Consensus 207 ~~~~---------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 207 PTRI---------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEE---------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred eEEe---------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 1000 00001 224456788899 565555433 4699999987653322 11122222 2 8999997
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCC
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDR 293 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~ 293 (434)
+..++++-..++.|+.|+.... ...+.......+ .... ......-.....++++|+|+++++-. .++
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g---------~~dg-~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKT---------VQDG-LREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCS---------CBCE-EGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCC---------cCCC-cccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 6578888888899999987643 111110000000 0000 00001123578999999999777777 789
Q ss_pred cEEEEeCCCCeeeeEEecc-------------CCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 294 TIRIFQYNGGRSREIYHTK-------------RMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.|+.||+.++......... .......+++++++.++++-..++.|+.+++
T Consensus 346 ~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9999998777654433220 0135889999999888888778888888765
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=4e-13 Score=120.86 Aligned_cols=250 Identities=11% Similarity=0.066 Sum_probs=164.0
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEeeCCCCCCCCCCCCCCCCCCcee
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (434)
+.|.++|..+++.+..+..-..+ .+.++|++++|+++. .++.|.++|..+.+.............
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~--- 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF--- 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC---
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc---
Confidence 79999999999999988755555 899999999888876 367899999988754322111000000
Q ss_pred EEEecCceEEEeeccCCCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
........+.++|+|++++.++ +.|.++|+.+.+.+..+..... ....|.+...+++.+.||.+.+.+..
T Consensus 174 --~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 174 --LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp --CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred --ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECC
Confidence 0012234678999998877653 4699999999998888765321 23344444556666667776666663
Q ss_pred CCCcc------------------------eEEEeeecCceeEEEeeCCCCccce-eeee----------CcccCeEEEEE
Q 013873 235 MSSPA------------------------RKVIMRANEDCNCYSYDSRKLDEAK-CVHM----------GHESAVMDIDY 279 (434)
Q Consensus 235 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~i~~~~~ 279 (434)
..+.. ..+.. ....+.++..|........ ..+. ........+++
T Consensus 248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence 33221 11111 1233456666653221100 0000 00112223689
Q ss_pred ccCCCEEEEEeC----------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEee-CCCcEEEeecCccc
Q 013873 280 SPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGS-DDTNLRLWKAKASE 347 (434)
Q Consensus 280 sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~ 347 (434)
+|+++.+++... ++.|.++|+.+.+.+..+... ....+++|+|||+ ++++.. .++.|.|+|+.+++
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999987777642 357999999999988888655 3578999999999 888887 58999999999999
Q ss_pred ccccC
Q 013873 348 QLGVL 352 (434)
Q Consensus 348 ~~~~~ 352 (434)
.+..+
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88775
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=5e-13 Score=114.57 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=148.0
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEec--CceEEEeeccCCCEEEEeCCeEEEEeCCCCccee
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK--NSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPIN 197 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 197 (434)
.+++|++++.|+.|.+||..+++.+ ..+... ..+.++.+.|+|+++++.++.|..||. +++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-------------WEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-------------EEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-------------EEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEE
Confidence 3578999999999999998777432 222222 256788899999999977788999999 899888
Q ss_pred eeecCC-CceEEEEEcCCCCcEEEEEec-CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 198 SFQWGT-DTVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 198 ~~~~~~-~~i~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
.+..+. ..+.++.+.+++ +++++.+. ++.|..+|. .++....+..... ...+.....
T Consensus 70 ~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~-------------------~~~~~~~~~ 128 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETG-------------------IERPHAQFR 128 (276)
T ss_dssp EEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCS-------------------CSSGGGSCS
T ss_pred EEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCC-------------------CCccccccc
Confidence 888753 478899999998 67777766 777777775 4444333321100 001223445
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.+++.++|+++++...++.|..||.. ++.+..+... ..+.++...++|+++++++.++.|..+|..+++.+-.+.
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 56789999999999999999999998 8887777554 356678889999999999888899999999999877664
No 199
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.57 E-value=5.6e-13 Score=130.00 Aligned_cols=243 Identities=12% Similarity=0.114 Sum_probs=157.9
Q ss_pred CCCCCeEEEEeCCCCCceEEe-----eeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCc------
Q 013873 64 GHRDGISCMAKNPNYLKGFFS-----GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT------ 132 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~s-----g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~------ 132 (434)
+|...+..++||||| ++||- |+...+|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 466678899999999 76663 333457999999999865431 111113567899 9999998887743
Q ss_pred -------EEEeeCCCCCCCCCCCCCCCCCCceeEEEec----CceEEEeeccCCCEEEEeC------CeEEEEeCCCCc-
Q 013873 133 -------VKLWNVPVATLTDSDDSTDNSSEPLAVYVWK----NSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQ- 194 (434)
Q Consensus 133 -------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~- 194 (434)
|++|++.+... ....+.... .....+.++|+|..++... +.+.++|+.++.
T Consensus 203 ~~~~~~~v~~~~lgt~~~-----------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQE-----------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp --CCCCEEEEEETTSCGG-----------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred ccCCCcEEEEEECCCCcc-----------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 99999876532 112222221 2356788999999775432 369999998764
Q ss_pred ceeeeecCCCceEEEEEcCCCCcEEEEEecC---CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcc
Q 013873 195 PINSFQWGTDTVISVRFNPAEPNVLATTASD---RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHE 271 (434)
Q Consensus 195 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (434)
....+..+....... +++++..+++.+..+ +.|..+|+.......- ..+..|.
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~-----------------------~~l~~~~ 327 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHW-----------------------RDLIPER 327 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC-----------------------EEEECCC
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc-----------------------EEEecCC
Confidence 344555555555444 666665666666554 5688888876543100 0112444
Q ss_pred cCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCC----CcEEEeecC
Q 013873 272 SAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD----TNLRLWKAK 344 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~vw~~~ 344 (434)
..+. .|+++++.|+....++ .|++||+..+.. ..+.......+..+.+++++..|+....+ +.|+.||+.
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 4444 8899999887766544 689999986544 33333333567788888888766654443 789999987
Q ss_pred ccc
Q 013873 345 ASE 347 (434)
Q Consensus 345 ~~~ 347 (434)
+++
T Consensus 405 ~g~ 407 (693)
T 3iuj_A 405 SGA 407 (693)
T ss_dssp TCC
T ss_pred CCe
Confidence 765
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=1.6e-11 Score=106.89 Aligned_cols=240 Identities=11% Similarity=0.049 Sum_probs=165.8
Q ss_pred cCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE-EeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
......+.++++.++| .++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 16 ~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp SSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 3445788999999998 777777678999999987 55433 223334678999999999877776667889999976 4
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCccee-eeecCCCceEEEEEcCCCCcE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN-SFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~ 218 (434)
..... ........+..+++.+++.++++.. +.|..+|.. ++... .+......+.++++.+++ ++
T Consensus 93 ~~~~~-----------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l 159 (300)
T 2qc5_A 93 GFTEY-----------PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-AL 159 (300)
T ss_dssp CEEEE-----------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SE
T ss_pred CeEEe-----------cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CE
Confidence 32100 0000124567888899998888764 569999987 54432 222234568899999988 57
Q ss_pred EEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 219 LATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
+++...++.|..||. .+... .+. ...+...+.+++++++|+++++....+.|.+|
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~-~~~-----------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLE-EYP-----------------------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEE-EEE-----------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEECC-CCcEE-Eee-----------------------CCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 766666788999987 33221 110 01234567899999999877776667789999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
|. ++.............+.+++++++|++.++...++.|..|+..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred cC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 98 4444333222233568899999999977776667899999983
No 201
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=6.6e-13 Score=117.43 Aligned_cols=220 Identities=9% Similarity=0.053 Sum_probs=148.0
Q ss_pred ccccccccc-CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-eeEEe---------eccCCCeeEEEEcC-CCC
Q 013873 55 ARPFIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQY---------SGHQGAVRGLTVST-DGR 122 (434)
Q Consensus 55 ~~~~~~~l~-~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~i~~~~-~~~ 122 (434)
++.++..+. ++......++++|+| .++++...++.|++||..... .+..+ ..+-.....++++| ++.
T Consensus 78 ~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 78 NAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp TCCEEEEECTTTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred CCeEEeccCCCccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 344443332 556789999999998 788888889999999976542 44554 23445788999999 787
Q ss_pred eEEEee-CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEeC--CeEEEEeCCCCcceee
Q 013873 123 ILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINS 198 (434)
Q Consensus 123 ~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~ 198 (434)
++++.+ .++.|++|+. .+.....+......... ..........++++++ +.++++.. +.|.+||..+++.+..
T Consensus 157 lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~--~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSP--RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp EEEEECSSCCEEEEECT-TSCEEEEECEECCSSSC--CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCC--CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 777775 6899999994 33322111100000000 0001123678999998 66666654 4699999998888877
Q ss_pred ee--cCCCceEEEEEcCCCCcEEEEEe-------cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 199 FQ--WGTDTVISVRFNPAEPNVLATTA-------SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 199 ~~--~~~~~i~~i~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
+. .+...+.+++++| + ..+++.+ .+..|++||+.++.....+. ...+
T Consensus 234 ~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~----------------------~~~~ 289 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK----------------------PVRK 289 (329)
T ss_dssp ECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC----------------------CSSS
T ss_pred EeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc----------------------CCCC
Confidence 74 3456788999999 3 3443332 34488899987765443321 0024
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 302 (434)
+...+.+++++|+|.++++...++.|++|++..
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 566789999999998888888899999999754
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1.8e-12 Score=126.99 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=149.3
Q ss_pred CCCCceEEeee-CCC----cEEEEeCCCCceeEEee------ccCCCeeEEEEcCCCCeEEEeeCCC-----cEEEeeCC
Q 013873 76 PNYLKGFFSGS-MDG----DIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDC-----TVKLWNVP 139 (434)
Q Consensus 76 ~~~~~~l~sg~-~dg----~i~iwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l~s~~~dg-----~v~iwd~~ 139 (434)
|+| .+++... ..+ .+++.+..++.....+. +|...+..++|+|||++|+.+..++ .|++||+.
T Consensus 81 ~dG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKG-KRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EET-TEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEC-CEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 788 5554333 222 34555554554332222 2334688999999999998776543 89999998
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--Ce----------------EEEEeCCCCcce--eee
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQ----------------VDIWNHNRSQPI--NSF 199 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------i~i~d~~~~~~~--~~~ 199 (434)
++.. .........+..++|+|||..|+.+. +. |.+|++.+++.. ..+
T Consensus 160 tg~~-------------~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 160 GAKE-------------LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp TTEE-------------EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred CCCC-------------CcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 7743 11112222356789999998777653 22 999999887632 222
Q ss_pred ec--CCCceEEEEEcCCCCcEEEEEec-----CCcEEEEEccC------CC-cceEEEeeecCceeEEEeeCCCCcccee
Q 013873 200 QW--GTDTVISVRFNPAEPNVLATTAS-----DRSITLYDLRM------SS-PARKVIMRANEDCNCYSYDSRKLDEAKC 265 (434)
Q Consensus 200 ~~--~~~~i~~i~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
.. +...+..+.|+|++. .|+.++. +..|.+||+.+ +. ....+
T Consensus 227 ~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l----------------------- 282 (710)
T 2xdw_A 227 EFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL----------------------- 282 (710)
T ss_dssp CCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-----------------------
T ss_pred ccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccceEEe-----------------------
Confidence 22 345578999999995 4544443 56789999875 32 12221
Q ss_pred eeeCcccCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCee--eeEEeccCC-ccEEEEEEcCCCCEEEEeeCCCc-
Q 013873 266 VHMGHESAVMDIDYSPTGREFVTGSYD----RTIRIFQYNGGRS--REIYHTKRM-QRVFCVKFSCDASYVISGSDDTN- 337 (434)
Q Consensus 266 ~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~- 337 (434)
..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ...+..+.. ..+.+++|++++.++++...||.
T Consensus 283 --~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 283 --IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp --ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred --eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 234444444 488999987776653 3599999987642 233333332 36888999988888888888885
Q ss_pred -EEEeecCcccccccC
Q 013873 338 -LRLWKAKASEQLGVL 352 (434)
Q Consensus 338 -v~vw~~~~~~~~~~~ 352 (434)
|.+|++.+++.+..+
T Consensus 360 ~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 360 TLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEEEec
Confidence 566676566655444
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=2.6e-13 Score=120.32 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=125.9
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-----------eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
.++.+++++.. .++++|+.++ +.+|++.+.. ..... .+.. |+.++| ++.+|+++ .+|.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 69999999998 8899999875 6669876443 11223 3666 999999 88899988 88999999
Q ss_pred eCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCC
Q 013873 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 216 (434)
|+.+... ......+...+.++.+.+.
T Consensus 112 dv~sl~~----------------------------------------------------~~~~~~~~~~v~~i~~~~p-- 137 (388)
T 1xip_A 112 DLEELSE----------------------------------------------------FRTVTSFEKPVFQLKNVNN-- 137 (388)
T ss_dssp ESSSTTC----------------------------------------------------EEEEEECSSCEEEEEECSS--
T ss_pred Echhhhc----------------------------------------------------cCccceeecceeeEEecCC--
Confidence 9865521 0111122344556666543
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 296 (434)
+ +++++.||.|.+||+....... +...|++++|||+| ++.|..||.++
T Consensus 138 ~-~av~~~dG~L~v~dl~~~~~~~-----------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 138 T-LVILNSVNDLSALDLRTKSTKQ-----------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEE-----------------------------EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred C-EEEEECCCCEEEEEccCCcccc-----------------------------ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 2 8888999999999998654321 34579999999999 67899999999
Q ss_pred EEeCCCCee--eeEE------ec--cCCccEEEEEEcCCCCEEEE
Q 013873 297 IFQYNGGRS--REIY------HT--KRMQRVFCVKFSCDASYVIS 331 (434)
Q Consensus 297 iwd~~~~~~--~~~~------~~--~~~~~v~~~~~s~~~~~l~s 331 (434)
+|+...+.. ...+ .. .+...|.++.|.+++.++++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999888774 3344 11 24478999999999999887
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.54 E-value=9e-12 Score=108.84 Aligned_cols=241 Identities=12% Similarity=-0.012 Sum_probs=157.1
Q ss_pred cccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
....+..+..+........|+|++..+++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.
T Consensus 33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 334455566667778899999998347788888899999997 454 345555677899999999998666655567899
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-------------------CCeEEEEeCCCCcc
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------------------GAQVDIWNHNRSQP 195 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~i~d~~~~~~ 195 (434)
+|+.. +....... .........+..+.+.++|.++++. .+.|..||..+++.
T Consensus 111 ~~~~~-g~~~~~~~--------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~ 181 (305)
T 3dr2_A 111 RSDAD-GQAHLLVG--------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL 181 (305)
T ss_dssp EECTT-SCEEEEEC--------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred EECCC-CCEEEEEe--------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence 99975 32210000 0000012345678899999988862 13478888766654
Q ss_pred eeeeecCCCceEEEEEcCCCCcEEEEEecC------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 196 INSFQWGTDTVISVRFNPAEPNVLATTASD------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 196 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
.... .......++|+|++ ..|+.+... +.|..|++.... ..... + ....
T Consensus 182 ~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~--------~-------------~~~~ 236 (305)
T 3dr2_A 182 QRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR--------H-------------FASV 236 (305)
T ss_dssp EEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EEEEE--------E-------------EECC
T ss_pred EEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe--------E-------------EEEC
Confidence 4333 33456789999998 444444443 689999987543 11100 0 0001
Q ss_pred cccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
..+....++++++|++.+ ++.++ |.+|+.. ++....+.... .+.+++|+++++.|+.++.++
T Consensus 237 ~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~~-g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLWS-SSGTG-VCVFDSD-GQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SSSCCCSEEECTTSCEEE-CCSSE-EEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCCCeEEECCCCCEEE-ecCCc-EEEECCC-CCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe
Confidence 123355688999999544 44454 9999984 55555554443 588999999998888877664
No 205
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=2.8e-12 Score=111.58 Aligned_cols=207 Identities=10% Similarity=0.056 Sum_probs=140.1
Q ss_pred ceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEE
Q 013873 100 RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (434)
..+..+..+.....+++|+|+++ +++++..++.|..|+..++ . .........+.+++++++|.++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-------------~~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-------------SPEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-------------EEEESSCSSEEEEEECTTCCEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-------------EEEECCCCCcceeeECCCCcEE
Confidence 33445555666788999999998 7778888999999998654 1 1111233457889999999988
Q ss_pred EEeC--CeEEEEeCCCCcceeeeecC----CCceEEEEEcCCCCcEEEEEec-----------------CCcEEEEEccC
Q 013873 179 ATAG--AQVDIWNHNRSQPINSFQWG----TDTVISVRFNPAEPNVLATTAS-----------------DRSITLYDLRM 235 (434)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~ 235 (434)
++.. +.|.+||..+++........ ...+..++++|+| .++++.+. .+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 8875 46999999777654332221 2345679999988 67776321 2234333332
Q ss_pred CCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCee---eeEEec
Q 013873 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRS---REIYHT 311 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~ 311 (434)
+ ... ....+......++|+|+|+.+++.+.++.|.+||+. ++.. ...+ .
T Consensus 162 g-~~~-------------------------~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~ 214 (296)
T 3e5z_A 162 G-TLS-------------------------APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T 214 (296)
T ss_dssp S-CEE-------------------------EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C
T ss_pred C-CEE-------------------------EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e
Confidence 1 111 112445567899999999998777778999999987 4544 2333 3
Q ss_pred cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 312 KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 312 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.....+.+++++++|+++++. ++.|.+|+.. ++.+..+
T Consensus 215 ~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 333556789999999977665 7889999986 6655444
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=3.6e-11 Score=105.95 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=150.6
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (434)
.-..+.+|+|++..+++++..++.|.+||..+++.. .+. ....+.++.|+++|+++++. .+ .|.+||..++.....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 345678999986477788878899999999877543 333 35689999999999877654 44 499999876643211
Q ss_pred CCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcE
Q 013873 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 218 (434)
..... . .....+..+.++++|.++++.. +.|..++ +++. ..+..+......++|+|++..+
T Consensus 125 ~~~~~--~------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 125 AELES--D------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp ECSST--T------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEE
T ss_pred eeCCC--C------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEE
Confidence 00000 0 0013467889999999877653 3466666 4433 2232233456789999998555
Q ss_pred EEEEecCCcEEEEEcc--CC-Ccce-EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 219 LATTASDRSITLYDLR--MS-SPAR-KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 219 l~~~~~dg~i~iwd~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
+++.+.++.|.+||+. ++ .... ... ..+......+.+++++++|+++++...++.
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---------------------~~~~~~~~~p~gi~~d~~G~lwva~~~~~~ 252 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVF---------------------IDSTGIKGGMDGSVCDAEGHIWNARWGEGA 252 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEE---------------------EECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEE---------------------EECCCCCCCCCeeEECCCCCEEEEEeCCCE
Confidence 6666667899999986 33 2111 100 001112345678999999988777767788
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEc-CCCCEEEEeeCC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS-CDASYVISGSDD 335 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d 335 (434)
|.+||. +++....+.... ..+++++|+ ++++.|+.++..
T Consensus 253 v~~~d~-~g~~~~~i~~~~-~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYEVPG-KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEECT-TCCEEEEEECSC-SBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEECC-CCCEEEEEECCC-CCcEEEEEecCCCCEEEEEecC
Confidence 999998 455555554432 569999998 888877655443
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=9.4e-13 Score=128.67 Aligned_cols=235 Identities=8% Similarity=0.025 Sum_probs=143.0
Q ss_pred eCCCCCceEEeeeCCC-----cEEEEeCCCCceeEEee------ccCCCeeEEEEcCCCCeEE-----EeeCCCcEEEee
Q 013873 74 KNPNYLKGFFSGSMDG-----DIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILV-----SCGTDCTVKLWN 137 (434)
Q Consensus 74 ~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l~-----s~~~dg~v~iwd 137 (434)
.+|+| .+++....++ .|++.+...+.....+. +|...+.+++|+|||++|+ .|+.+..|++||
T Consensus 75 p~~dG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRN-GRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEET-TEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEEC-CEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 34788 6665554433 34555554554333332 3555789999999999998 444557899999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C-------------eEEEEeCCCCcc----eee
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A-------------QVDIWNHNRSQP----INS 198 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~i~i~d~~~~~~----~~~ 198 (434)
+.++........ .......++|+|||..|+... . .|++|++.++.. +..
T Consensus 154 l~tg~~~~~~~~------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~ 221 (695)
T 2bkl_A 154 VDSGEWSKVDVI------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221 (695)
T ss_dssp TTTCCBCSSCCB------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred CCCCCCcCCccc------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence 998865310000 001124678999998777653 2 299999988763 223
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecC-C--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASD-R--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
...+...+.++.|+|+|..++++...+ + .|.+|+..... ...+ ..+...+.
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l-------------------------~~~~~~~~ 275 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLL-------------------------VKGVGAKY 275 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEE-------------------------EECSSCCE
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEe-------------------------ecCCCceE
Confidence 333446788999999995444444333 3 45555433221 1111 13344455
Q ss_pred EEEEccCCCEEEEEe---CCCcEEEEeCCCCee---eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecC-cccc
Q 013873 276 DIDYSPTGREFVTGS---YDRTIRIFQYNGGRS---REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK-ASEQ 348 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~-~~~~ 348 (434)
...+ ++|.+++.+. .++.|.+||+.++.. ...+.......+..++|+ ++.++++...||..+||.+. +++.
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe
Confidence 5556 5666444443 257899999987653 333322223568888998 77788888899998888765 3443
Q ss_pred c
Q 013873 349 L 349 (434)
Q Consensus 349 ~ 349 (434)
+
T Consensus 354 ~ 354 (695)
T 2bkl_A 354 V 354 (695)
T ss_dssp E
T ss_pred e
Confidence 3
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=6.5e-11 Score=102.98 Aligned_cols=236 Identities=8% Similarity=-0.026 Sum_probs=157.9
Q ss_pred CCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeE-EeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCC
Q 013873 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (434)
.+...+.++++.+++ .++++...++.|..||.. ++... .+......+.++++.+++.++++...++.|..|+.. +.
T Consensus 59 ~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 344679999999998 777776667889999987 55432 222234678999999999887777668899999876 43
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCcEE
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l 219 (434)
.... ...........+.+.+++.++++.. +.|..+|. +++.... .......+..+++.+++ .++
T Consensus 136 ~~~~-----------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~ 202 (300)
T 2qc5_A 136 IYEY-----------DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALW 202 (300)
T ss_dssp EEEE-----------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEE
T ss_pred EEEc-----------cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEE
Confidence 2100 0000123567888999998777763 56999998 4443321 22234568899999987 677
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 299 (434)
++....+.|..||. .+.... + ....+...+.+++++++|+++++...++.|..||
T Consensus 203 v~~~~~~~i~~~~~-~g~~~~-~-----------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 203 FVEIMGNKIGRITT-TGEISE-Y-----------------------DIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEE-E-----------------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EEccCCCEEEEEcC-CCcEEE-E-----------------------ECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 76666778999987 222111 1 0112345678999999998777766678999999
Q ss_pred CCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 300 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.. +.............+.+++++++|++.++.. . .|..++.
T Consensus 258 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 258 ND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 84 4433222222235678999999998666554 4 6666664
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.49 E-value=2.5e-12 Score=113.85 Aligned_cols=256 Identities=7% Similarity=-0.052 Sum_probs=160.7
Q ss_pred ceEEeeeCCC----cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee----------CCCcEEEeeCCCCCCCC
Q 013873 80 KGFFSGSMDG----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTD 145 (434)
Q Consensus 80 ~~l~sg~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~ 145 (434)
..+++...++ +|.++|..+++.+.++..-..+ .+.++|++++++++. .++.|.+||+.+.+...
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3444444444 7889999999999998755556 799999999999886 36899999998875432
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----CeEEE--EeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDI--WNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i--~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
.......... ........+.++|+|++++.+. ..+.+ +|..+ +..+..... +.+.|++...+
T Consensus 111 ~I~v~~~~~~-----~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~ 178 (368)
T 1mda_H 111 DIELPDAPRF-----SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATH 178 (368)
T ss_dssp EEEETTSCSC-----CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEE
T ss_pred EEECCCcccc-----ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEE
Confidence 2111000000 0002244688999998877653 35788 88877 344432111 22345565677
Q ss_pred EEEecCCcEEEEEccC-----CCcce-------------------EEEeeecCceeEEEeeCCCCcc-ceeeee------
Q 013873 220 ATTASDRSITLYDLRM-----SSPAR-------------------KVIMRANEDCNCYSYDSRKLDE-AKCVHM------ 268 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~-----~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------ 268 (434)
++.+.||.+.+.|+.. ++... .+.. .+. +.++..|...... ......
T Consensus 179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEE-EcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 7777888888888765 21110 0011 111 3444445432110 000000
Q ss_pred -C---cccCeEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCC-EEEEee-
Q 013873 269 -G---HESAVMDIDYSPTGREFVTGSY---------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGS- 333 (434)
Q Consensus 269 -~---~~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~- 333 (434)
. .......++++|+++.++.+.. ++.+.++|+.+.+.+..+..+ ....+++|+|||+ ++++..
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEET
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccC
Confidence 0 0111122689999998876543 235669999999887777555 3688999999998 456666
Q ss_pred CCCcEEEeecCcccccccCC
Q 013873 334 DDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 334 ~dg~v~vw~~~~~~~~~~~~ 353 (434)
.++.|.++|+.+++.+..+.
T Consensus 335 ~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TTTEEEEEESSSCEEEEECC
T ss_pred CCCeEEEEECCCCcEEEEEE
Confidence 58999999999999988775
No 210
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=4.1e-12 Score=108.92 Aligned_cols=199 Identities=10% Similarity=0.017 Sum_probs=140.6
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (434)
+...+.+++++++| .++++.. ++.|.+||..+.... .+. .....+.++++.++|.++++...++.|.+|+..+...
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 34578899999998 6666555 889999998765433 332 2335789999999998777777788999997544321
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
... ..........+++++++.++++.. +.|.+||............+...+.++++++++ .++++
T Consensus 142 ~~~------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~ 208 (270)
T 1rwi_B 142 TVL------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVT 208 (270)
T ss_dssp EEC------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEE
T ss_pred Eee------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEE
Confidence 100 001122456788899998777764 579999988766544333333668899999988 78888
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
...++.|.+||........ ....+...+.+++++|+|+++++...++.|.+|++.
T Consensus 209 ~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTSTV-------------------------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp ETTTSCEEEECTTCSCCEE-------------------------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred ECCCCcEEEEcCCCCccee-------------------------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 7778899999986532211 001233568899999999988888889999999987
Q ss_pred CCe
Q 013873 302 GGR 304 (434)
Q Consensus 302 ~~~ 304 (434)
..+
T Consensus 264 ~~~ 266 (270)
T 1rwi_B 264 EHH 266 (270)
T ss_dssp GGG
T ss_pred Ccc
Confidence 654
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.41 E-value=5e-11 Score=105.89 Aligned_cols=252 Identities=8% Similarity=0.026 Sum_probs=149.0
Q ss_pred CCeEEEEeCCCCCceEEeee--CCCcEEEEeCCCCceeEEe-------eccCCCeeEEEEcCCCCeEEEeeC-----CCc
Q 013873 67 DGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVSTDGRILVSCGT-----DCT 132 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~~~-----dg~ 132 (434)
.....++++|+| .++++.. .++.++||.+.+++. ..+ ..|-..+.+++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 789999999998 7887753 234355555545543 222 124568999999999875554333 578
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEe-----CCeEEEEeCCCCcceeeeecCC---
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATA-----GAQVDIWNHNRSQPINSFQWGT--- 203 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~~--- 203 (434)
|.+||+.+++............ ........++++++ +.++++. .+.|.+||+.+++....+..|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPIT------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTS------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred EEEEECCCCeEEEEEECChhhc------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 9999998775332211100000 01123467888875 4455553 2469999998776554442210
Q ss_pred --------------------------CceEEEEEcCCCCcEEEEEecCC-cEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 204 --------------------------DTVISVRFNPAEPNVLATTASDR-SITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 204 --------------------------~~i~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
..+..++|+|++ ..|+.+..++ .+..++........ + . +.
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~-~--~---~~------ 235 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQ-L--T---DA------ 235 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTT-C--C---HH------
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCC-C--C---hh------
Confidence 135778888887 4555555444 44444432100000 0 0 00
Q ss_pred CCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q 013873 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 336 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 336 (434)
...... ...++.+....++++++|+++++...++.|.+||..+++............+.+++|.+++.++++.+..+
T Consensus 236 --~~~~~~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 236 --ELGSKI-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp --HHHTTC-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred --hhhcce-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 000000 01123345667999999999999888999999998566644333332235689999999999888877655
Q ss_pred cEEEee
Q 013873 337 NLRLWK 342 (434)
Q Consensus 337 ~v~vw~ 342 (434)
.+.+|.
T Consensus 313 ~~~~f~ 318 (343)
T 2qe8_A 313 HSAPLN 318 (343)
T ss_dssp GSGGGB
T ss_pred cccccc
Confidence 554443
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=1.4e-10 Score=114.25 Aligned_cols=233 Identities=14% Similarity=0.077 Sum_probs=140.1
Q ss_pred CCCCCceEEeeeCCC---cEEEE--eCC---CCceeEEe------eccCCCeeEEEEcCCCCeEEEeeCC-----CcEEE
Q 013873 75 NPNYLKGFFSGSMDG---DIRLW--DIA---NRRTVCQY------SGHQGAVRGLTVSTDGRILVSCGTD-----CTVKL 135 (434)
Q Consensus 75 ~~~~~~~l~sg~~dg---~i~iw--d~~---~~~~~~~~------~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~i 135 (434)
+|+| .+++....++ .-.+| +.. .+.....+ .+|...+..++|+|||++|+.+..+ ..|++
T Consensus 115 ~pdG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRG-ASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEET-TEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEEC-CEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4888 6655444332 24444 443 33332222 2233468899999999999877554 46999
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C--------------eEEEEeCCCCcc--ee
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A--------------QVDIWNHNRSQP--IN 197 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~i~i~d~~~~~~--~~ 197 (434)
||+.++... ........+..++|+|+ ..++... + .|.+|++.++.. ..
T Consensus 194 ~dl~tg~~~-------------~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l 259 (741)
T 1yr2_A 194 VGVADGKPL-------------ADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP 259 (741)
T ss_dssp EETTTCCEE-------------EEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred EECCCCCCC-------------CccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence 999887431 11111122356889999 7666542 1 388999877653 22
Q ss_pred eeec--CCCceEEEEEcCCCCcEEEEEecC-----CcEEEEEccCCCc--ceEEEeeecCceeEEEeeCCCCccceeeee
Q 013873 198 SFQW--GTDTVISVRFNPAEPNVLATTASD-----RSITLYDLRMSSP--ARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268 (434)
Q Consensus 198 ~~~~--~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (434)
.+.. +...+..+.|+|+|. .|+..+.+ ..|.+||+.++.. ...+ .
T Consensus 260 v~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-------------------------~ 313 (741)
T 1yr2_A 260 VFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTAL-------------------------I 313 (741)
T ss_dssp EECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEE-------------------------E
T ss_pred EeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEe-------------------------c
Confidence 2322 223588999999994 55555443 3788898876521 2222 1
Q ss_pred CcccCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCe-eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 269 GHESAVMDIDYSPTGREFVTGSYD----RTIRIFQYNGGR-SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 269 ~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.+...+... ++|+|+.|+..+.+ +.|.+||+.++. ....+..++...+.+++|+ ++.++++...||..+||.+
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 233334444 34899988887754 459999998742 2233334444567778887 6667888888998888766
Q ss_pred C-cccccc
Q 013873 344 K-ASEQLG 350 (434)
Q Consensus 344 ~-~~~~~~ 350 (434)
. +++.+.
T Consensus 392 ~~~g~~~~ 399 (741)
T 1yr2_A 392 DLDGKPAG 399 (741)
T ss_dssp ETTSCEEE
T ss_pred eCCCCcee
Confidence 4 344333
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=4.9e-10 Score=99.02 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=150.5
Q ss_pred hhccccccccccCCCCCeEEEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeeccC-------CCeeE
Q 013873 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGHQ-------GAVRG 114 (434)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~ 114 (434)
+..+...+.++..-..+ .++++||| .+|+++. .++.|.+||..+++.+..+.-.. .....
T Consensus 65 D~~t~~v~~~I~vG~~P--~va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~ 141 (386)
T 3sjl_D 65 DGEAGRVIGMIDGGFLP--NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM 141 (386)
T ss_dssp ETTTTEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGG
T ss_pred ECCCCeEEEEEECCCCC--cEEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCce
Confidence 34455566666544444 49999999 6666654 36789999999999888875321 24567
Q ss_pred EEEcCCCCeEEEeeC--CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-C--EEEEeCCeEEEEe
Q 013873 115 LTVSTDGRILVSCGT--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-D--LFATAGAQVDIWN 189 (434)
Q Consensus 115 i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~i~d 189 (434)
+.|+|||++++++.. ++.|.++|+.+.+....+.. .. . ....|.+ . +.++.+|.+.+.+
T Consensus 142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------------~g-~--~~~~P~g~~~~~~~~~DG~~~~v~ 205 (386)
T 3sjl_D 142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------PD-C--YHIFPTAPDTFFMHCRDGSLAKVA 205 (386)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------CS-E--EEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------------CC-c--ceeecCCCceeEEECCCCCEEEEE
Confidence 899999999988864 68999999988865433211 11 0 0111222 1 2233345566666
Q ss_pred CCC-Ccceee----eecCCCceE-EEEEc-CCCCcEEEEEecCCcEEEEEccCCCc--ceEE------------------
Q 013873 190 HNR-SQPINS----FQWGTDTVI-SVRFN-PAEPNVLATTASDRSITLYDLRMSSP--ARKV------------------ 242 (434)
Q Consensus 190 ~~~-~~~~~~----~~~~~~~i~-~i~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------------------ 242 (434)
+.. ++.... +......+. ...|. ++| .+++ .+.+|.|.+.|+..... ...+
T Consensus 206 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 206 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp CCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence 654 333211 111112221 23554 444 4444 55589999999865421 1111
Q ss_pred -----------Eeee---------cCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEE-eCCCcEEEEeC
Q 013873 243 -----------IMRA---------NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTG-SYDRTIRIFQY 300 (434)
Q Consensus 243 -----------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~-~~d~~i~iwd~ 300 (434)
.... .....+..+|.........+..++ .+.+|+++||++ +|+++ ..++.|.++|.
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 1111 113566777776665555554443 678999999997 66665 45899999999
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCC
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~ 325 (434)
.+++.+..+... +.-+.+.+++|
T Consensus 362 ~t~k~~~~i~~~--~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQL--GHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECCC--CSSCCEEEECC
T ss_pred CCCcEEEEecCC--CCCceeEECCc
Confidence 999988887554 33445666665
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=7.2e-12 Score=111.14 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=121.1
Q ss_pred ceEEEeeccCCCEEEEeCC-eEEEEeCCCCc-----------ceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEE
Q 013873 165 SFWAVDHQWEGDLFATAGA-QVDIWNHNRSQ-----------PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd 232 (434)
.+..+++++...++++++. .+.+|++.... +.... .... |+.++| ++ ..|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG-DQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET-TEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC-CEEEEE-cCCcEEEEE
Confidence 5678899999998888875 58889865332 11222 2455 999999 56 677777 889999999
Q ss_pred ccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc
Q 013873 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK 312 (434)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 312 (434)
++........ ..|..++.++.+.+. .+++++.||.|.+||+.++....
T Consensus 113 v~sl~~~~~~-------------------------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----- 160 (388)
T 1xip_A 113 LEELSEFRTV-------------------------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----- 160 (388)
T ss_dssp SSSTTCEEEE-------------------------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----
T ss_pred chhhhccCcc-------------------------ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----
Confidence 9876533322 245566777776654 38889999999999999877643
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc--cccCChhhhhhhHHHHHHHHhhccchhhhhhhhccCC
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ--LGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 385 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 385 (434)
....|+|++|||+| ++.|..||.+++|+...++. ..++.... .+.+..+|...|.++.|.+..
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp--------~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS--------ELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCH--------HHHTSCTTTSEEEEEEESSSS
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCc--------ccccccCCCeeEEEEEEecCC
Confidence 12579999999999 67889999999998877664 44443221 111112345666777776543
No 215
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.36 E-value=6.2e-10 Score=99.03 Aligned_cols=237 Identities=10% Similarity=0.062 Sum_probs=149.3
Q ss_pred CCCCceEEeeeCCCcEEEEeCCCC----ceeEEee------cc-CCCeeEEEEcCCCCeEEEeeCC------CcEEEeeC
Q 013873 76 PNYLKGFFSGSMDGDIRLWDIANR----RTVCQYS------GH-QGAVRGLTVSTDGRILVSCGTD------CTVKLWNV 138 (434)
Q Consensus 76 ~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~------~h-~~~v~~i~~~~~~~~l~s~~~d------g~v~iwd~ 138 (434)
+++..++++|..+++|.++|+.+. +...++. .. ...-..+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 777456667888899999998755 5555552 01 1134557788999 77766555 78999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---------------------CeEEEEeCCCCccee
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---------------------AQVDIWNHNRSQPIN 197 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~i~i~d~~~~~~~~ 197 (434)
.+.+.+......... ..--+.+.++|+++.+++.+ ..|.+||+.+++.+.
T Consensus 172 ~T~~v~~~~~~~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp TTCCEEEECCSBCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCCeEEEEEccCCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 888665444322110 01123466789999888873 569999999988887
Q ss_pred eeecCC--CceEEEEE--cCCCCcEEEEEe-----cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC--ccce--
Q 013873 198 SFQWGT--DTVISVRF--NPAEPNVLATTA-----SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL--DEAK-- 264 (434)
Q Consensus 198 ~~~~~~--~~i~~i~~--~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 264 (434)
++.... .....+.| +|++...++++- .+++|.+|....+...... ..+.... ....
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~-----------vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK-----------VIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE-----------EEEECCEECCSSCCG
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE-----------EEeCCCccccccccc
Confidence 777632 23445555 999966666666 7789988877542211111 1110000 0000
Q ss_pred --eeeeCcccCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCC---eeeeEEeccCC-------------ccEEEEEEcCC
Q 013873 265 --CVHMGHESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGG---RSREIYHTKRM-------------QRVFCVKFSCD 325 (434)
Q Consensus 265 --~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~---~~~~~~~~~~~-------------~~v~~~~~s~~ 325 (434)
..+.+-......|.+||||++|+++.. .+.|.+||+... +....+..+.. +.-..++++||
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 000000235778999999999887765 678999998632 34434433210 13578999999
Q ss_pred CCEEEEee
Q 013873 326 ASYVISGS 333 (434)
Q Consensus 326 ~~~l~s~~ 333 (434)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999888
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.36 E-value=3.6e-10 Score=101.16 Aligned_cols=93 Identities=10% Similarity=-0.056 Sum_probs=66.8
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeecc-------CCCe
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGAV 112 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v 112 (434)
+++..+...+..+.....+ .++++||| ++|+.+. .++.|.+||..+.+.+..+... ....
T Consensus 51 v~D~~t~~~~~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 51 VLDAGSGSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEECCCCeEEEEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 3344455556666544444 99999999 7777664 3678999999988887766422 1234
Q ss_pred eEEEEcCCCCeEEEeeC--CCcEEEeeCCCCCCCCC
Q 013873 113 RGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDS 146 (434)
Q Consensus 113 ~~i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~ 146 (434)
..+.|+|+|++|+++.. ++.|.++| .+++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 57899999999998874 47899999 88876544
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.3e-09 Score=94.69 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=134.7
Q ss_pred cCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEE
Q 013873 108 HQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD 186 (434)
Q Consensus 108 h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (434)
...-.-+..|++++. ++++...++.|..||..++.. ........+.+++++++|.++++..+.|.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~i~~~~dG~l~v~~~~~l~ 76 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--------------QRVTMDAPVSSVALRQSGGYVATIGTKFC 76 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--------------EEEECSSCEEEEEEBTTSSEEEEETTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--------------EEEeCCCceEEEEECCCCCEEEEECCeEE
Confidence 334456788999544 555656688999999876531 22334567889999999998888878899
Q ss_pred EEeCCCCcceeeeec----CCCceEEEEEcCCCCcEEEEEecC---------CcEEEEEccCCCcceEEEeeecCceeEE
Q 013873 187 IWNHNRSQPINSFQW----GTDTVISVRFNPAEPNVLATTASD---------RSITLYDLRMSSPARKVIMRANEDCNCY 253 (434)
Q Consensus 187 i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (434)
+||..+++....... ....+..++++|+| .++++...+ ..-.+|.+........
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~------------ 143 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK------------ 143 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE------------
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEE------------
Confidence 999987764332221 12357889999988 555544322 2234444432211111
Q ss_pred EeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE-EeCCCcEEEEeC--CCCeee--eEEe--ccCCccEEEEEEcCCC
Q 013873 254 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT-GSYDRTIRIFQY--NGGRSR--EIYH--TKRMQRVFCVKFSCDA 326 (434)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~--~~~~~~--~~~~--~~~~~~v~~~~~s~~~ 326 (434)
...+....+.++|+|+++.|+. .+.++.|.+||+ .++... ..+. .........++++++|
T Consensus 144 -------------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 144 -------------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG 210 (297)
T ss_dssp -------------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred -------------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence 1122345678999999987654 455788999987 455432 1121 1122467899999999
Q ss_pred CEEEEeeCCCcEEEeecCcccccccC
Q 013873 327 SYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 327 ~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
++.++...++.|.+||..+++.+..+
T Consensus 211 ~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 211 KLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 98888777888999999988877655
No 218
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=1.4e-09 Score=95.32 Aligned_cols=195 Identities=5% Similarity=0.028 Sum_probs=129.2
Q ss_pred CCCCeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCCceeEE-eec----cCCCeeEEEEcCCCCeEEEeeCC--------
Q 013873 65 HRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQ-YSG----HQGAVRGLTVSTDGRILVSCGTD-------- 130 (434)
Q Consensus 65 h~~~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~l~s~~~d-------- 130 (434)
+...+.+++++++ + .++++.. .+.|.+||.. ++.... ... ....+.+++++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc
Confidence 5678999999999 6 6555544 4479999988 665432 221 12458899999999877776554
Q ss_pred -------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeec----cCCCEE-EEe--CCeEEEEeCC-CCc-
Q 013873 131 -------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ----WEGDLF-ATA--GAQVDIWNHN-RSQ- 194 (434)
Q Consensus 131 -------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~--~~~i~i~d~~-~~~- 194 (434)
+.|..|+.. +. .............++++ +++..+ ++. ++.|.+||.. .++
T Consensus 146 ~~~~~~~~~l~~~~~~-g~-------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQ-------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp BTTSSSCEEEEEECTT-SC-------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred ccccCCCCeEEEECCC-CC-------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 456666653 21 12222333455678888 998644 443 2569999976 343
Q ss_pred ----ceeeeecCC-CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeC
Q 013873 195 ----PINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG 269 (434)
Q Consensus 195 ----~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (434)
....+..+. ..+..+++++++ +++++...++.|.+||..++.....+ ..
T Consensus 212 ~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~-------------------------~~ 265 (314)
T 1pjx_A 212 ENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRI-------------------------RC 265 (314)
T ss_dssp EEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEE-------------------------EC
T ss_pred ccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEE-------------------------eC
Confidence 222233333 567889999988 77777777889999998755443322 13
Q ss_pred cccCeEEEEEccCCCEEEE-EeCCCcEEEEeCCC
Q 013873 270 HESAVMDIDYSPTGREFVT-GSYDRTIRIFQYNG 302 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~ 302 (434)
+...+.+++|+|+|+.|+. ...++.|..|++..
T Consensus 266 ~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 4467899999999995554 45567899999865
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=117.34 Aligned_cols=220 Identities=10% Similarity=0.023 Sum_probs=120.0
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.......... ...
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~~-- 83 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--ELV-- 83 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HHH--
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--ccc--
Confidence 7899999999999999999999988875 5666666667787888888999999999988765322211100 000
Q ss_pred EEecCceEEEeeccCCCEE-EEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc
Q 013873 160 YVWKNSFWAVDHQWEGDLF-ATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 238 (434)
...+ ....++.++ .+.++.+..||..+++.+..+..+. ...++|.+ ..+++++.|+.|..||.++++.
T Consensus 84 --~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 --QASP----CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp --TTCS----CC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred --ccCc----eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE
Confidence 0000 111223222 2334679999999999887776543 23455655 6788889999999999998876
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCeeeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 315 (434)
...+... . ....+++++. ..+++++.||.|..||..+++.+...... .
T Consensus 153 ~W~~~~~-----------------------~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~ 203 (369)
T 2hz6_A 153 RWNATYF-----------------------D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA--S 203 (369)
T ss_dssp CCEEEEE-----------------------E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS--S
T ss_pred EEeEecc-----------------------c----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC--C
Confidence 6554210 0 0112223322 45777888999999999999877665433 3
Q ss_pred cEE-EEEEcCCCCEE----EEeeCCCcEEEeecCccc
Q 013873 316 RVF-CVKFSCDASYV----ISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 316 ~v~-~~~~s~~~~~l----~s~~~dg~v~vw~~~~~~ 347 (434)
++. ...++++|... +.+ ++.++.+|..+|+
T Consensus 204 pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 204 PVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp CEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred ceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence 443 34455666432 122 4467777777776
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.25 E-value=2.7e-09 Score=96.86 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=131.6
Q ss_pred CCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--C--eE
Q 013873 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A--QV 185 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~i 185 (434)
.....++|+++++++++...++.|++||..++.. ........... +++++++..++..+ + .|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-------------~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-------------TTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-------------EEEEETCCBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-------------EEeeccCCCCc-eeEecCCCcEEEEecCCCceE
Confidence 3577899999998777777779999999876532 11222222233 88999998776665 2 68
Q ss_pred EEEeCCCCcceeee----ecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 186 DIWNHNRSQPINSF----QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 186 ~i~d~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
.+++...+.....+ ......+.+++++|++..+++ +..++.|..||...... .+.. ...
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~--~~~~-~~~------------- 259 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV--TLIK-QLE------------- 259 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE--EEEE-ECC-------------
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE--EEEe-ccc-------------
Confidence 88888765543333 213456788999995535555 66788999999876542 1110 000
Q ss_pred cceeeeeCccc--CeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeeeEEeccC--------------CccEEEEEEcC
Q 013873 262 EAKCVHMGHES--AVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTKR--------------MQRVFCVKFSC 324 (434)
Q Consensus 262 ~~~~~~~~~~~--~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~s~ 324 (434)
..++.. +...++|+|+ +.++++-..++.|+.|+.... . ..+.... ......++++|
T Consensus 260 -----~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 260 -----LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDE 332 (409)
T ss_dssp -----CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred -----ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence 001111 1238999995 556666667889999998754 2 2221111 13478999999
Q ss_pred CCCEEEEee-CCCcEEEeecCcccc
Q 013873 325 DASYVISGS-DDTNLRLWKAKASEQ 348 (434)
Q Consensus 325 ~~~~l~s~~-~dg~v~vw~~~~~~~ 348 (434)
+|+++++-. .++.|+.|++.++..
T Consensus 333 dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 333 DGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp TCCEEEEETTTTCEEEEEETTTTEE
T ss_pred CCCEEEEeCCCCCEEEEEECCCCEE
Confidence 999877777 789999999777654
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2.7e-10 Score=110.17 Aligned_cols=269 Identities=10% Similarity=0.024 Sum_probs=163.2
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeecc-C----CCeeEEEEcCCCCeEEEeeC------CCcEEEeeCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH-Q----GAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~----~~v~~i~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 148 (434)
..|+.++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. +|.|..||..+++......
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 56888889999999999999999888754 1 122211111 2345555543 7999999999988664433
Q ss_pred CCCCCC-Cce-------------------eEEEecCceEEEeeccCCCEEEEeCC---------------------eEEE
Q 013873 149 STDNSS-EPL-------------------AVYVWKNSFWAVDHQWEGDLFATAGA---------------------QVDI 187 (434)
Q Consensus 149 ~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~i 187 (434)
...... .+. ...........+++++++..++.+.+ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 221110 000 00011122235667777776665432 3899
Q ss_pred EeCCCCcceeeeecCCC---------ceEEEEEcCCCC--cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEee
Q 013873 188 WNHNRSQPINSFQWGTD---------TVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256 (434)
Q Consensus 188 ~d~~~~~~~~~~~~~~~---------~i~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
+|..+++.+..++.... ...-+....+|. ..++.++.+|.++++|..+++.+......... ....+|
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~~d 365 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASGYD 365 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEEEC
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC--cccccC
Confidence 99999998877764211 122223333442 57888999999999999998877655322100 000111
Q ss_pred CCC----------CccceeeeeCccc--CeEEEEEccCCCEEEEEeCC--------------------------------
Q 013873 257 SRK----------LDEAKCVHMGHES--AVMDIDYSPTGREFVTGSYD-------------------------------- 292 (434)
Q Consensus 257 ~~~----------~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d-------------------------------- 292 (434)
... .........+..+ .-..++++|++.++++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 000 0000000000000 01257889988888775432
Q ss_pred -----------CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 293 -----------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 293 -----------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
|.|..||+.+++........ .++.+..+..++.+++.++.||.+++||..+++.+..+.
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 78999999999987666443 334455566778889999999999999999999887663
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1.8e-09 Score=104.56 Aligned_cols=257 Identities=13% Similarity=0.092 Sum_probs=161.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCC----------e-eEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA----------V-RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (434)
..|++++.++.|+.+|..+|+.+..+...... + ..+.+ .+..+++++.|+.|..+|..+++......
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 56777888899999999999998887543211 0 11222 34578888899999999999887653322
Q ss_pred CC-CCCCCceeEEEecCceEEEeec---cCCCEEEEe-------CCeEEEEeCCCCcceeeeecCC--------------
Q 013873 149 ST-DNSSEPLAVYVWKNSFWAVDHQ---WEGDLFATA-------GAQVDIWNHNRSQPINSFQWGT-------------- 203 (434)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~-------------- 203 (434)
.. ... ....+..+ .++.+++.. ++.|..||..+++.+..+....
T Consensus 149 ~~~~~~-----------~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 149 TRADHK-----------RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCSCTT-----------SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CcCCCC-----------CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 21 000 00000011 134444432 3569999999999887664210
Q ss_pred -----------------CceEEEEEcCCCCcEEEEEecCCc-------------------EEEEEccCCCcceEE-----
Q 013873 204 -----------------DTVISVRFNPAEPNVLATTASDRS-------------------ITLYDLRMSSPARKV----- 242 (434)
Q Consensus 204 -----------------~~i~~i~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~----- 242 (434)
.....+++.|+. .+++.++.++. |..||..+++....+
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~ 296 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG 296 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence 011256788876 57777777653 888888776544322
Q ss_pred -------------------------EeeecCceeEEEeeCCCCccceeeeeCc---------------------------
Q 013873 243 -------------------------IMRANEDCNCYSYDSRKLDEAKCVHMGH--------------------------- 270 (434)
Q Consensus 243 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 270 (434)
+..+..++.++.+|..............
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 2234456777777765543221100000
Q ss_pred cc-----------CeEEEEEccCCCEEEEEeC---------------------------------------------CCc
Q 013873 271 ES-----------AVMDIDYSPTGREFVTGSY---------------------------------------------DRT 294 (434)
Q Consensus 271 ~~-----------~i~~~~~sp~~~~l~~~~~---------------------------------------------d~~ 294 (434)
.. .-..++|+|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 00 0112688898887776532 377
Q ss_pred EEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
|..||+.+++.......+ .++....+...+.++++|+.||.|+.||..+|+.+..+
T Consensus 457 l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 999999999987766443 23333456667889999999999999999999988655
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=6.2e-09 Score=91.62 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=127.0
Q ss_pred eeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC
Q 013873 112 VRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (434)
Q Consensus 112 v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (434)
..+..|+|++. ++++...++.|..||..++.. ........+.++.+++++.++++....|.+||.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~ 116 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK--------------TVHALPFMGSALAKISDSKQLIASDDGLFLRDT 116 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEEECSSCEEEEEEEETTEEEEEETTEEEEEET
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEEECCCcceEEEEeCCCeEEEEECCCEEEEEC
Confidence 45678999754 555666688999999876532 122234567889999999988887777999999
Q ss_pred CCCcceeeeec----CCCceEEEEEcCCCCcEEEEEecC----CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 191 NRSQPINSFQW----GTDTVISVRFNPAEPNVLATTASD----RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 191 ~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
.+++....... ....+.++.++|++ .++++...+ +...+|.+..+. ...+
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~-------------------- 174 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK-VTKL-------------------- 174 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE-EEEE--------------------
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCc-EEEe--------------------
Confidence 88764332221 12358899999988 555544321 223333332211 1111
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--CC-eee--eEEe--ccCCccEEEEEEcCCCCEEEEeeC
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYN--GG-RSR--EIYH--TKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~--~~-~~~--~~~~--~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
..+....+.++|+|+|+.|+.+ +.++.|.+||+. ++ ... ..+. ........+++++++|.+.++...
T Consensus 175 -----~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~ 249 (326)
T 2ghs_A 175 -----FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG 249 (326)
T ss_dssp -----EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred -----eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC
Confidence 1122346789999999876555 456889999986 55 321 1221 112245778999999998777766
Q ss_pred CCcEEEeecCcccccccC
Q 013873 335 DTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 335 dg~v~vw~~~~~~~~~~~ 352 (434)
++.|.+|+. +++.+..+
T Consensus 250 ~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 250 EGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp TTEEEEECT-TCCEEEEE
T ss_pred CCEEEEECC-CCCEEEEE
Confidence 788999998 56555433
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.18 E-value=2e-08 Score=90.45 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=141.7
Q ss_pred hhhhccccccccccCCCCCeEEEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeecc-------CCCe
Q 013873 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGAV 112 (434)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v 112 (434)
+.+..+...+.++..-..+ .++++||+ ++|+++. .++.|.++|..+++.+..+.-. ....
T Consensus 103 VID~~t~~vv~~I~vG~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 103 VIDGSTGRILGMTDGGFLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEECCCCEEEEEEECCCCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 3344455556666444445 89999999 6666654 4678999999999988877521 1345
Q ss_pred eEEEEcCCCCeEEEeeC--CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CE--EEEeCCeEEE
Q 013873 113 RGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DL--FATAGAQVDI 187 (434)
Q Consensus 113 ~~i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~i 187 (434)
..+.|+|+|++|+++.. ++.|.+.|+.+.+....+.. ... ....|++ .. ..+.+|.+.+
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-------------~g~---~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-------------PDC---YHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------CSE---EEEEEEETTEEEEEETTSSEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-------------CCc---eeeccCCCcEEEEEcCCCCEEE
Confidence 67899999999998874 57899999988755332211 110 1111221 11 1223345555
Q ss_pred EeCCCCccee----eeecCCCc-eEEEEEcCCCCcEEEEEecCCcEEEEEccCCCc--------------------c---
Q 013873 188 WNHNRSQPIN----SFQWGTDT-VISVRFNPAEPNVLATTASDRSITLYDLRMSSP--------------------A--- 239 (434)
Q Consensus 188 ~d~~~~~~~~----~~~~~~~~-i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------~--- 239 (434)
.++.+++... .+.....+ ...+.+.+++..+++ .+..+.+.+.|+..... .
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 5554443331 11111111 123456777744444 45567888888743210 0
Q ss_pred --------eEEEeeec---------CceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC-EEEEEe-CCCcEEEEeC
Q 013873 240 --------RKVIMRAN---------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS-YDRTIRIFQY 300 (434)
Q Consensus 240 --------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~-~d~~i~iwd~ 300 (434)
..+..... ..+.+..+|.........+..+ ....+++|+|||+ +++++. .++.|.++|+
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 00011100 1245666666555444444322 2478899999999 888888 5899999999
Q ss_pred CCCeeeeEE
Q 013873 301 NGGRSREIY 309 (434)
Q Consensus 301 ~~~~~~~~~ 309 (434)
.+++.+..+
T Consensus 401 ~t~kvv~tI 409 (426)
T 3c75_H 401 ATGEELRSV 409 (426)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 999988776
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.2e-09 Score=96.79 Aligned_cols=236 Identities=8% Similarity=-0.061 Sum_probs=140.2
Q ss_pred hhhccccccccccCCCCCeEEEEeCCCCCceEEeee----------CCCcEEEEeCCCCceeEEeecc-------CCCee
Q 013873 51 EKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGAVR 113 (434)
Q Consensus 51 ~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~ 113 (434)
.+.-+...+.++..-..+ .+.++||+ .+++++. .++.|.+||+.+++.+.++... .....
T Consensus 51 ID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 51 SCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred EECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc
Confidence 344455666666544445 79999999 6666664 4688999999999999988643 12356
Q ss_pred EEEEcCCCCeEEEeeC--CCcEEE--eeCCCCCCCCCCCCCCCCCCceeEEEe----------cCceEEEee--------
Q 013873 114 GLTVSTDGRILVSCGT--DCTVKL--WNVPVATLTDSDDSTDNSSEPLAVYVW----------KNSFWAVDH-------- 171 (434)
Q Consensus 114 ~i~~~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-------- 171 (434)
.+.++|||++++++.. +..|.+ +|+.+. ...... .+...... .+.+..+..
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv---~~i~v~----~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDD---QLTKSA----SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEEE---EEEECS----SCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhhc---eEEECC----CceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 7999999999998864 467888 998551 110000 00000000 000000000
Q ss_pred ------------------ccCCC-EEEEeCCeEEEEeCCCCc--ceeeeecC----------CCceEEEEEcCCCCcEEE
Q 013873 172 ------------------QWEGD-LFATAGAQVDIWNHNRSQ--PINSFQWG----------TDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 172 ------------------~~~~~-~~~~~~~~i~i~d~~~~~--~~~~~~~~----------~~~i~~i~~~~~~~~~l~ 220 (434)
.+++. ++.+..+.+.+.|..... .+..+... ......+.++|++..+++
T Consensus 201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred eEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 22222 122222567777765432 12211110 011122679999866665
Q ss_pred EEe---c-----CCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCE-EEEEe-
Q 013873 221 TTA---S-----DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE-FVTGS- 290 (434)
Q Consensus 221 ~~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~-l~~~~- 290 (434)
+.. . ++.+.++|+.+.+....+.. .....+++|+|||++ +++..
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--------------------------g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN--------------------------GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEE--------------------------EEEECEEEECCSSSCEEEEEET
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEEC--------------------------CCCcceEEECCCCCEEEEEccC
Confidence 544 2 23566999988876655421 124788999999984 56666
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcC
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 324 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 324 (434)
.++.|.++|+.+++.+..+..+ .....+++.+
T Consensus 335 ~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred CCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 5999999999999988877654 3344565543
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.14 E-value=6.3e-08 Score=87.08 Aligned_cols=249 Identities=8% Similarity=0.023 Sum_probs=149.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeecc---------CCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH---------QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
..+++++.++.|..||..+++.+..+... ...+.+. ...++..++.++.++.|..+|..+++........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 56788888999999999999988776542 1223222 2224557888889999999999888643222111
Q ss_pred CCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCCCce-----EEEEEcCCCCcEEEEEec
Q 013873 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTV-----ISVRFNPAEPNVLATTAS 224 (434)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~~l~~~~~ 224 (434)
..+.......++.+++.. ++.+..+|..+++.+..+....... ...... + ..+++++.
T Consensus 133 -------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~ 196 (376)
T 3q7m_A 133 -------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGD 196 (376)
T ss_dssp -------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCT
T ss_pred -------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcC
Confidence 111000011134444433 4679999999998887766532211 112222 2 35677888
Q ss_pred CCcEEEEEccCCCcceEEEe---------------------------eecCceeEEEeeCCCCccceeeeeCcccCeEEE
Q 013873 225 DRSITLYDLRMSSPARKVIM---------------------------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 277 (434)
Q Consensus 225 dg~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 277 (434)
+|.+..+|..+++....... .+..++.++.+|.......-.. .......+
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~---~~~~~~~~ 273 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR---ELGSVNDF 273 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE---CCCCEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec---cCCCCCCc
Confidence 89999999877655443321 1223444455554332211111 11223333
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 278 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 278 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.. ++..++.++.++.|..+|..+++............+..... .+..|+.++.+|.|.++|..+++.+...
T Consensus 274 ~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 274 IV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 33 46678888889999999999998766554222122222333 2467888889999999999999876544
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.13 E-value=8.8e-08 Score=81.62 Aligned_cols=220 Identities=9% Similarity=0.055 Sum_probs=137.5
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~ 145 (434)
..+..++|++++..++++-..++.|.+++.........+...-.....+++++++..|+.+ ...+.|.+++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 3577999999763556666667899999987665433333223567899999976555544 4567899999864321
Q ss_pred CCCCCCCCCCceeEEE-ecCceEEEeeccC-CCEEEEeC----CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEE
Q 013873 146 SDDSTDNSSEPLAVYV-WKNSFWAVDHQWE-GDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 219 (434)
..... .......++++++ +.++++.. +.|..+++............-.....+++++++..++
T Consensus 114 -----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~ly 182 (267)
T 1npe_A 114 -----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182 (267)
T ss_dssp -----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred -----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEE
Confidence 11111 1134578889985 44555542 3577888764332211222234578899999876777
Q ss_pred EEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 013873 220 ATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iw 298 (434)
++-...+.|..+|+...... .+ ... ......++.. +..|+.+. ..+.|..+
T Consensus 183 v~d~~~~~I~~~~~~g~~~~-~~------------------------~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 183 WVDAGTHRAECLNPAQPGRR-KV------------------------LEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEETTTTEEEEEETTEEEEE-EE------------------------EEC-CCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEecCCCceE-EE------------------------ecC-CCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 77777889999998642111 00 011 1223456653 44554444 56899999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCC
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 327 (434)
|..+++....+..........+++.|++.
T Consensus 235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCCCCceEEEccccccccceeeecCccC
Confidence 99999887777554323467788888764
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=2.3e-08 Score=87.07 Aligned_cols=205 Identities=10% Similarity=-0.016 Sum_probs=126.2
Q ss_pred eEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEE
Q 013873 102 VCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (434)
Q Consensus 102 ~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
+..+...........|+++++ ++++...++.|..|+.. +. .............+.++++|.++++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------------~~~~~~~~~~~~gl~~d~dG~l~v~ 102 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------------VDVLLDATAFTNGNAVDAQQRLVHC 102 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------------EEEEEESCSCEEEEEECTTSCEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------------EEEEeCCCCccceeeECCCCCEEEE
Confidence 344444556677899999998 55666678899999873 31 1222233456788999999998887
Q ss_pred eC--CeEEEEeCCCCcceeeeecC----CCceEEEEEcCCCCcEEEE----Eec-------------CCcEEEEEccCCC
Q 013873 181 AG--AQVDIWNHNRSQPINSFQWG----TDTVISVRFNPAEPNVLAT----TAS-------------DRSITLYDLRMSS 237 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~ 237 (434)
.. +.|.+|+.. ++........ ...+..+++.|+| .++++ |.. .+.|..||..++.
T Consensus 103 ~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 103 EHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp ETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred ECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 65 469999986 4432211111 1245678888888 56665 221 1334444443222
Q ss_pred cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCeee--eEE
Q 013873 238 PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD------RTIRIFQYNGGRSR--EIY 309 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~ 309 (434)
... . . .....+.++|+|+++.|+.+... +.|.+|++..+... ..+
T Consensus 181 ~~~-------------------------~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 181 LQR-------------------------M-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp CEE-------------------------E-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred EEE-------------------------E-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence 110 1 1 22346789999999988877665 78999998765421 112
Q ss_pred eccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 310 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 310 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
..........++++++|++.+ ++.+ .|.+|+. .++.+..+
T Consensus 234 ~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 234 ASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp ECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEE
T ss_pred EECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEE
Confidence 111123456789999999544 4445 4999998 45555444
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=7.6e-09 Score=100.90 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=122.4
Q ss_pred ccCCCeeEEEEcCCCCeEEEe-----eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe
Q 013873 107 GHQGAVRGLTVSTDGRILVSC-----GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA 181 (434)
Q Consensus 107 ~h~~~v~~i~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
+|...+..++|+|||++|+.+ +.+..|++||+.+++. ............++|+ |++.|+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-------------~~~~~~~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-------------LETPLKDVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-------------EEEEEEEEESCCCEEE-TTTEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-------------CccccCCceeccEEEe-CCCEEEEE
Confidence 355578889999999988843 3335799999988742 1111111113467788 88866654
Q ss_pred CC---------------eEEEEeCCCCcc--eeee--ec-CCCceEEEEEcCCCCcEEEEEecC---CcEEEEEccCCCc
Q 013873 182 GA---------------QVDIWNHNRSQP--INSF--QW-GTDTVISVRFNPAEPNVLATTASD---RSITLYDLRMSSP 238 (434)
Q Consensus 182 ~~---------------~i~i~d~~~~~~--~~~~--~~-~~~~i~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~ 238 (434)
.. .|.+|++.+... ...+ .. +.....++.|+|++..++++.+.+ ..|.++|+.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 31 289999887653 2222 22 334578899999996555555433 4788888876532
Q ss_pred -ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CC---CcEEEEeCCCCee--eeEEec
Q 013873 239 -ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YD---RTIRIFQYNGGRS--REIYHT 311 (434)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~ 311 (434)
...+ ..+....... |+++|..|+..+ .+ +.|..+|+.++.. ...+..
T Consensus 272 ~~~~l-------------------------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 272 PLLTV-------------------------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp CCEEE-------------------------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred ceEEE-------------------------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 2221 2344444444 666666655444 33 5799999987654 223333
Q ss_pred cCCccEEEEEEcCCCCEEEEeeC-CC--cEEEeecCccc
Q 013873 312 KRMQRVFCVKFSCDASYVISGSD-DT--NLRLWKAKASE 347 (434)
Q Consensus 312 ~~~~~v~~~~~s~~~~~l~s~~~-dg--~v~vw~~~~~~ 347 (434)
+. ..+. .|++++++|+.... +| .|++|++..+.
T Consensus 326 ~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 326 ER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp CC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred CC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 33 3333 88999988876664 43 68999987543
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=4e-08 Score=82.14 Aligned_cols=209 Identities=11% Similarity=0.090 Sum_probs=134.4
Q ss_pred ceeEEeeccCC--CeeEEEEcCCCCeEEEeeC--CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCc--eEEEeecc
Q 013873 100 RTVCQYSGHQG--AVRGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS--FWAVDHQW 173 (434)
Q Consensus 100 ~~~~~~~~h~~--~v~~i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (434)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++..... ..... ...+++..
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-------------~l~~~~fgeGi~~~g 75 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-------------KMDDSYFGEGLTLLN 75 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-------------ECCTTCCEEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-------------ecCCCcceEEEEEeC
Confidence 4455664 543 3578999998754554443 579999999988653321 11111 12334432
Q ss_pred CCCEEEEe--CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCcee
Q 013873 174 EGDLFATA--GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCN 251 (434)
Q Consensus 174 ~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 251 (434)
+ .++++. ++.+.++|..+.+.+..+...... ...+++++..++++ ..++.|.++|..+.+....+......
T Consensus 76 ~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~--- 148 (266)
T 2iwa_A 76 E-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNG--- 148 (266)
T ss_dssp T-EEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETT---
T ss_pred C-EEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCC---
Confidence 2 233333 367999999999998888654111 23355567566655 46889999999888776665322110
Q ss_pred EEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC------------CccEEE
Q 013873 252 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR------------MQRVFC 319 (434)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~v~~ 319 (434)
.....++.+.|. +|..++....++.|.+.|..+++....+.... ......
T Consensus 149 -----------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -----------------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -----------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -----------------cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 011236678887 77655555568899999999999888775421 135689
Q ss_pred EEEcCCCCE-EEEeeCCCcEEEeecCccc
Q 013873 320 VKFSCDASY-VISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 320 ~~~s~~~~~-l~s~~~dg~v~vw~~~~~~ 347 (434)
++|+|+++. ++++...+.|.+.++....
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999998865 5556678899999887653
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.09 E-value=3.3e-07 Score=80.45 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=148.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec--------------------cCCCeeEEEEcC-CCCeE
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--------------------HQGAVRGLTVST-DGRIL 124 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------------------h~~~v~~i~~~~-~~~~l 124 (434)
-....+++|++++ .+++++..++.|..||..++... .+.. ....+..+++.+ ++ .|
T Consensus 18 ~~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l 94 (322)
T 2fp8_A 18 SYAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QL 94 (322)
T ss_dssp SSCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EE
T ss_pred cCCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cE
Confidence 3456788899997 87888888999999998765432 2221 113578899997 55 45
Q ss_pred EEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE--EecCceEEEeecc-CCCEEEEeC-------------------
Q 013873 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQW-EGDLFATAG------------------- 182 (434)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~------------------- 182 (434)
+.+...+.|..+|..++..... .... ........+++.+ +|.++++..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~----------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQL----------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEE----------ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EEEECCCCEEEEeCCCCEEEEe----------cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 5555555688888654421100 0000 0113456788999 898877642
Q ss_pred CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
+.+..||..+++....... -.....++++|++..++++-...+.|..|++.........
T Consensus 165 g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-------------------- 223 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-------------------- 223 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE--------------------
T ss_pred ceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc--------------------
Confidence 3588888876653322221 2345679999988545666566789999998753211100
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeeeEEeccC---CccEEEEEEcCCCCEE
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKR---MQRVFCVKFSCDASYV 329 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 329 (434)
.+....+ ...+++.++|+++++... .+.|..+|.. ++....+.... ...++++++ .+++++
T Consensus 224 ---~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ 297 (322)
T 2fp8_A 224 ---VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLY 297 (322)
T ss_dssp ---EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEE
T ss_pred ---eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEE
Confidence 0000112 677999999987766654 4678888875 55555554332 234666766 466666
Q ss_pred EEeeCCCcEEEeecCc
Q 013873 330 ISGSDDTNLRLWKAKA 345 (434)
Q Consensus 330 ~s~~~dg~v~vw~~~~ 345 (434)
++...++.|.++++..
T Consensus 298 v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 298 IGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECSSCSEEEEEEC--
T ss_pred EeecCCCceEEEeccc
Confidence 6666788899998764
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=2.8e-08 Score=87.51 Aligned_cols=217 Identities=13% Similarity=0.063 Sum_probs=142.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..|..++.++.|..+|.. ++....+..+...+.++...+++. |..++.++.|..+|.. +..... .
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~------------~ 172 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR------------F 172 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE------------E
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE------------E
Confidence 557778888999999988 777777666666677777777776 6667778999999986 432111 1
Q ss_pred EEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc
Q 013873 160 YVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 239 (434)
......+.++...+++.+.+.. +.+..+| .+++.+..+......+.++...+++ . +..++.++.|..+|. ++...
T Consensus 173 ~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~-l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 173 KTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-T-IYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp ECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-C-EEEEETTTEEEEECT-TSCEE
T ss_pred ecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-e-EEEEcCCCeEEEECC-CCCEe
Confidence 1112234455566788877777 8899999 6777776666555667888888776 3 555677788888864 22222
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
..+. .....+..+.+.+++ .|..++.+|.|..+|. +++....+... ...+.+
T Consensus 248 ~~~~-------------------------~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~ 299 (330)
T 3hxj_A 248 WRFK-------------------------TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIAT 299 (330)
T ss_dssp EEEE-------------------------CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSC
T ss_pred EEee-------------------------CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-Cccccc
Confidence 2111 111222334555555 5667777888999996 56655555433 245677
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
+..++++. |..|+.+|.+++.....
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEECTTCC-EEEECTTSCEEEEEC--
T ss_pred eEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 77878887 55588899999877654
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=4.8e-09 Score=96.73 Aligned_cols=240 Identities=8% Similarity=0.073 Sum_probs=148.1
Q ss_pred CCCCceEEee-eCCCcEEEEeCCCCceeEEeec-cCCCeeEEEE-c-CCCCeEEEee------------------CCCcE
Q 013873 76 PNYLKGFFSG-SMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTV-S-TDGRILVSCG------------------TDCTV 133 (434)
Q Consensus 76 ~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~i~~-~-~~~~~l~s~~------------------~dg~v 133 (434)
+|| .+|+.. ..++.|.+.|+.+.+....+.- .......+++ . |++.++++++ .++.+
T Consensus 99 ~DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 377 555544 4566799999999998775432 2346788888 4 8999998885 24578
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------------------------------
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------------------------------- 182 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 182 (434)
.+.|..+.+.... .........++++|+|.++++.+
T Consensus 178 tvID~~t~~v~~q-------------I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 178 TAVDADKWEVAWQ-------------VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEETTTTEEEEE-------------EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEEECCCCeEEEE-------------EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 8888876533221 11112233445555555444332
Q ss_pred ---------CeEEEEeCCC--Ccc-eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcce--EEEeeecC
Q 013873 183 ---------AQVDIWNHNR--SQP-INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR--KVIMRANE 248 (434)
Q Consensus 183 ---------~~i~i~d~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~ 248 (434)
+.|.+.|..+ ++. +..+.. .....++.++|+|..+++++..+.+|.++|+.+..... .+
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l------ 317 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA------ 317 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC------
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc------
Confidence 2377777776 444 444443 23457899999997788888889999999998542110 00
Q ss_pred ceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----------CeeeeEEeccCCccE-
Q 013873 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG----------GRSREIYHTKRMQRV- 317 (434)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~v- 317 (434)
...........-......++|+|+|...++.-.|+.|.+||+.. ...+..+..+- .+-
T Consensus 318 ----------~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh 386 (595)
T 1fwx_A 318 ----------DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGH 386 (595)
T ss_dssp ----------CGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEE
T ss_pred ----------CcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cccc
Confidence 00000000112234578899999995455667799999999876 34444443321 111
Q ss_pred ----EEEEEcCCCCEEEEeeC---CCcE----------EEeecCccc
Q 013873 318 ----FCVKFSCDASYVISGSD---DTNL----------RLWKAKASE 347 (434)
Q Consensus 318 ----~~~~~s~~~~~l~s~~~---dg~v----------~vw~~~~~~ 347 (434)
.++.++|||++|+++.. |..+ .++|+..++
T Consensus 387 ~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 387 LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 12355899999998763 4321 889995444
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=4.2e-07 Score=77.40 Aligned_cols=232 Identities=9% Similarity=0.057 Sum_probs=138.0
Q ss_pred ceEEeeeCCCcEEEEeCCCCcee-----EEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTV-----CQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNS 153 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (434)
.+|+.+.. +.|+.+++...... ..+......+.+++|++++..|+.+ ..++.|..++......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------- 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------- 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------
Confidence 34444443 47888988765321 1122223457789999966655554 4568999999865421
Q ss_pred CCceeEEEe-cCceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec--CCc
Q 013873 154 SEPLAVYVW-KNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS--DRS 227 (434)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~ 227 (434)
...... ......+++++++. ++++.. +.|.++++..................++++|++..++++... .+.
T Consensus 71 ---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~ 147 (267)
T 1npe_A 71 ---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (267)
T ss_dssp ---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred ---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence 111111 13567888988654 444433 469999986543322222222457899999976466665543 467
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSR 306 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~ 306 (434)
|..+++..... ..+ ..........++++|++..|+.+. ..+.|.++|+......
T Consensus 148 I~~~~~dg~~~-~~~------------------------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 148 IETSHMDGTNR-RIL------------------------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR 202 (267)
T ss_dssp EEEEETTSCCC-EEE------------------------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred EEEEecCCCCc-EEE------------------------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence 77777653221 111 011224578899999877665554 5678999999765443
Q ss_pred eEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 307 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
..... . .....++.. ++.++++....+.|.+++..+++.+..+.
T Consensus 203 ~~~~~-~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 203 KVLEG-L-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEC-C-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEecC-C-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 33322 1 334567664 34444444456899999999988877664
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=5.9e-11 Score=106.36 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=100.2
Q ss_pred CCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCccee
Q 013873 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPIN 197 (434)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~ 197 (434)
++..+++++.||.|..||..+++..... .. ..+.+..+..++.+++++ ++.++.||..+++.+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-------------~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-------------KE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE-------------EC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-------------cC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee
Confidence 5678999999999999999888653222 11 223333344566666654 5779999998888766
Q ss_pred eeecCCCc-eE-EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 198 SFQWGTDT-VI-SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 198 ~~~~~~~~-i~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
.+..+... +. +..+. .+ ..+++++.|+.|..||..+++....+. .+.
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~-------------------------~~~---- 122 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLS-------------------------SAF---- 122 (369)
T ss_dssp ECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred eeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEec-------------------------CCC----
Confidence 55432111 10 00111 23 467788889999999999887655431 111
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCC---CEEEEeeCCCcEEEeecCccccccc
Q 013873 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA---SYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
...++|++..+++++.|+.|+.||..+++.+..+... .....+++++. ..+++++.||.|+.||..+++.+-.
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 1345668889999999999999999999876554322 12223344332 4577788899999999998887543
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=1.5e-08 Score=89.83 Aligned_cols=231 Identities=9% Similarity=0.046 Sum_probs=134.4
Q ss_pred CCeeEEEEcCCCCeEEEee--CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----
Q 013873 110 GAVRGLTVSTDGRILVSCG--TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----- 182 (434)
Q Consensus 110 ~~v~~i~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 182 (434)
..+..++++++|+.+++.. .++.++||.+.++.+. .+.... . ....+...+..+++++++.++++..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~---~--~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS---G--NAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC---S--SCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc---c--CcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence 6788999999999888853 2343566665433221 110000 0 0012235678899999998877653
Q ss_pred --CeEEEEeCCCCcceeeeecC------CCceEEEEEcCCCCcEEEEEe---cCCcEEEEEccCCCcceEEEe--eecCc
Q 013873 183 --AQVDIWNHNRSQPINSFQWG------TDTVISVRFNPAEPNVLATTA---SDRSITLYDLRMSSPARKVIM--RANED 249 (434)
Q Consensus 183 --~~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~--~~~~~ 249 (434)
..|.+||+.+++.+..+... ...+..+++++++..++++.. .++.|.+||+.++...+.+.. ....+
T Consensus 91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 47999999988876665432 235688999986656666666 678999999986653322100 00000
Q ss_pred eeEEEeeCCCCc--cceeeeeCcccCeEEEEEccCCCEEEEEeCCC-cEEEEeCC---CCee-----ee--EEeccCCcc
Q 013873 250 CNCYSYDSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSYDR-TIRIFQYN---GGRS-----RE--IYHTKRMQR 316 (434)
Q Consensus 250 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~---~~~~-----~~--~~~~~~~~~ 316 (434)
...+..+..... ............++.|+|+|+|+.|+.+..++ .|..++.. .+.. .. .... +...
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~ 249 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPI 249 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCS
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCC
Confidence 000000000000 00000000113468899999999998888776 44444431 1110 00 0111 1134
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 317 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
...++++++|.++++...++.|.+|+..+++
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 5679999999999998889999999985554
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=6.3e-08 Score=93.66 Aligned_cols=252 Identities=11% Similarity=0.071 Sum_probs=142.8
Q ss_pred CCcEEEEeCCCCceeEEeeccCCC--------------------------------eeEEEEcCCCCeEEEeeCCC----
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGA--------------------------------VRGLTVSTDGRILVSCGTDC---- 131 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~--------------------------------v~~i~~~~~~~~l~s~~~dg---- 131 (434)
+|.|+.||..+|+.+..+...... ...+++++++..++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999998877532211 13577888888888877664
Q ss_pred ---------------cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC---CEEEEeC--CeEEEEeCC
Q 013873 132 ---------------TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG---DLFATAG--AQVDIWNHN 191 (434)
Q Consensus 132 ---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~i~i~d~~ 191 (434)
.|..+|..+++....+.......-. +........+....+| ..++.++ |.++++|..
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd---~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~ 345 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD---YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT 345 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC---CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc---cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC
Confidence 4888999888654332221110000 0000111122222355 4555554 679999999
Q ss_pred CCcceeeeecCCC-----------ce------------------------EEEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 192 RSQPINSFQWGTD-----------TV------------------------ISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 192 ~~~~~~~~~~~~~-----------~i------------------------~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
+++.+..+..... .+ ..++++|+. .++++...+-...++.....
T Consensus 346 tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~ 424 (677)
T 1kb0_A 346 NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKW 424 (677)
T ss_dssp TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTC
T ss_pred CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccc
Confidence 9998766543210 01 146778877 46656554433333322100
Q ss_pred C--------------cc-e-EEE---eeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 237 S--------------PA-R-KVI---MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 237 ~--------------~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
. .. . .+. ......+.++.+|.......-.. .+..++....+..++.++++++.||.+++
T Consensus 425 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~--~~~~~~~~g~~~~~g~~v~~g~~dg~l~a 502 (677)
T 1kb0_A 425 EFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV--EHVSPWNGGTLTTAGNVVFQGTADGRLVA 502 (677)
T ss_dssp CTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE--EESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred ccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec--CCCCCCcCcceEeCCCEEEEECCCCcEEE
Confidence 0 00 0 000 00011245555555443222221 12334445556678889999999999999
Q ss_pred EeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE-EeeC----------------CCcEEEeecCc
Q 013873 298 FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI-SGSD----------------DTNLRLWKAKA 345 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----------------dg~v~vw~~~~ 345 (434)
||..+++.+..+.........-+.|..+|+.++ +.+. .+.+.+|.+..
T Consensus 503 ~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 503 YHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 999999998888665433334566777887544 3222 36788888763
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.00 E-value=1.3e-07 Score=85.09 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=139.4
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
..++.++.+|.|..+|..+++.+................ +..++.++.++.|..+|..+++........... ..
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~---~~- 177 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS---LS- 177 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc---ee-
Confidence 567788889999999999999887776443222222222 347888888999999999888643222111000 00
Q ss_pred EEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCCCc----------e-EEEEEcCCCCcEEEEEecCCc
Q 013873 160 YVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDT----------V-ISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~----------i-~~i~~~~~~~~~l~~~~~dg~ 227 (434)
.. ........ ++.+++.. ++.+..+|..+++.+......... + ...... + ..++.++.+|.
T Consensus 178 ~~---~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~ 250 (376)
T 3q7m_A 178 LR---GESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGN 250 (376)
T ss_dssp -C---CCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T-TEEEEECTTSC
T ss_pred ec---CCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcE
Confidence 00 00011111 33333322 367999999999887666532110 0 011111 2 45667778899
Q ss_pred EEEEEccCCCcceEEE--------------eeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCC
Q 013873 228 ITLYDLRMSSPARKVI--------------MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 293 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 293 (434)
+..+|..+++...... .....++.++.+|.......-.........+..... .+..|+.++.+|
T Consensus 251 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g 328 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG 328 (376)
T ss_dssp EEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred EEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence 9999988775443321 113334555666654332221111011111222222 356788889999
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEE-EEEEcCCCCEEEEeeCCCcEEEee
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
.|.++|..+++......... ..+. .... .+..|+.++.+|.|+.|+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~-~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDS-SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCT-TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCC-CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99999999998876665422 2222 1222 245678888999999987
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=2.7e-07 Score=76.19 Aligned_cols=194 Identities=11% Similarity=0.206 Sum_probs=124.6
Q ss_pred ceeEEeeccCCC--eeEEEEcCCCCeEEEeeCCC--cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEE--Eeecc
Q 013873 100 RTVCQYSGHQGA--VRGLTVSTDGRILVSCGTDC--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWA--VDHQW 173 (434)
Q Consensus 100 ~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 173 (434)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++..... ........ ++...
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-------------~l~~~~FgeGit~~g 96 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-------------ELGKRYFGEGISDWK 96 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-------------ECCTTCCEEEEEEET
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-------------ecCCccceeEEEEeC
Confidence 3455564 5443 4788898 666677777766 8999999988653322 22223322 33332
Q ss_pred CCCEEEEe-CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 174 EGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 174 ~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
+..+.++. ++.+.+||..+.+.+.++..... -..++ +++..++++ ..++.|.++|..+.+....+.....
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~----- 167 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAH----- 167 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEET-----
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccC-----
Confidence 22233333 36799999999999988876432 23344 456455544 4578899999998887766543211
Q ss_pred EEeeCCCCccceeeeeCc-ccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccC-----------CccEEEE
Q 013873 253 YSYDSRKLDEAKCVHMGH-ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-----------MQRVFCV 320 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~ 320 (434)
+. -..++.+.|. +|..++..-.++.|.+.|..+++....+.... ....+.+
T Consensus 168 ----------------g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 168 ----------------GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp ----------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred ----------------CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 11 1345567776 77666555568899999999999887774421 1356899
Q ss_pred EEcCCCCEEEEeeC
Q 013873 321 KFSCDASYVISGSD 334 (434)
Q Consensus 321 ~~s~~~~~l~s~~~ 334 (434)
+|+|+++.|++.+.
T Consensus 231 A~dp~~~~lfVTGK 244 (262)
T 3nol_A 231 AWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99998877776664
No 240
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.97 E-value=1.2e-06 Score=76.18 Aligned_cols=237 Identities=8% Similarity=0.037 Sum_probs=137.0
Q ss_pred ccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC--cEEE
Q 013873 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKL 135 (434)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~v~i 135 (434)
.+..+... .....++|++++ .++++-..++.|..||.... ....+. .......+++.++++++++..... .|..
T Consensus 24 ~~~~~p~~-~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDG-TIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTS-CEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECCCC-CEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34444322 567889999998 77777667899999997653 333333 345688999999998665543322 3666
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe--CCeEEEEeCCCCcc-eee---------eecCC
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQP-INS---------FQWGT 203 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~-~~~---------~~~~~ 203 (434)
++..++........ ........++..+++..+++. .+.|..+|...+.. +.. ....-
T Consensus 100 ~d~~~g~~~~~~~~-----------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 100 LVKSDGTVETLLTL-----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp EECTTSCEEEEEEC-----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred EcCCCCeEEEEEeC-----------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 67655532110000 000111223334444445544 36688888765421 110 00111
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
.....+ +|++..++++-...+.|..|++......... . .+ ........++++++|
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~--------~--------------~~-~~~~~P~gi~vd~dG 223 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP--------E--------------IF-VEQTNIDDFAFDVEG 223 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC--------E--------------EE-EESCCCSSEEEBTTC
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc--------E--------------EE-eccCCCCCeEECCCC
Confidence 234455 7777567777777889999998642111000 0 00 001234668999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeEEecc-CCccEEEEEEc---CCCCEEEEeeCC
Q 013873 284 REFVTGSYDRTIRIFQYNGGRSREIYHTK-RMQRVFCVKFS---CDASYVISGSDD 335 (434)
Q Consensus 284 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s---~~~~~l~s~~~d 335 (434)
+++++....+.|.++|.. ++........ .....++++|. |+++.|+.++..
T Consensus 224 ~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 224 NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 987777778899999976 5443221111 12568899998 888777766554
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=1.6e-06 Score=77.29 Aligned_cols=192 Identities=12% Similarity=0.164 Sum_probs=121.3
Q ss_pred CCCCeEEE-eeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE--------ecCceEEEeeccCCCEEEEeC-------
Q 013873 119 TDGRILVS-CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV--------WKNSFWAVDHQWEGDLFATAG------- 182 (434)
Q Consensus 119 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------- 182 (434)
+++++|+. +..++.|.++|+.+.... ........ ....-..+...|+| ++++..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~---------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE---------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS---------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC---------ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 67776665 566789999998644210 11111110 01123346678999 555543
Q ss_pred -CeEEEEeCCCCcceeeeecCCC---ceEEEEEcCCCCcEEEEEe-------------------cCCcEEEEEccCCCcc
Q 013873 183 -AQVDIWNHNRSQPINSFQWGTD---TVISVRFNPAEPNVLATTA-------------------SDRSITLYDLRMSSPA 239 (434)
Q Consensus 183 -~~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~ 239 (434)
+.+.++|..+.+.+..+..... .-..+-|+|++ +.+++.. .+.+|.+||+.+.+..
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 3599999999999888864322 24457889988 5666663 3689999999876444
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCeeeeEE--
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY--SPTGREFVTGS------YDRTIRIFQYNGGRSREIY-- 309 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--sp~~~~l~~~~------~d~~i~iwd~~~~~~~~~~-- 309 (434)
.++.+. ........+.| +|+++++++++ .+++|.+|..+.+......
T Consensus 242 ~tI~vg-----------------------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 242 HSLTLG-----------------------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp EEEESC-----------------------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred eEEecC-----------------------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 433210 01123344555 99999977776 4668888776654321111
Q ss_pred --ecc---------------CCccEEEEEEcCCCCEEEEeeC-CCcEEEeecC
Q 013873 310 --HTK---------------RMQRVFCVKFSCDASYVISGSD-DTNLRLWKAK 344 (434)
Q Consensus 310 --~~~---------------~~~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~ 344 (434)
... .......+.+|+||++|+++.. .+.|.+||+.
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000 0134678999999999988774 6899999986
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.92 E-value=1.5e-07 Score=86.88 Aligned_cols=246 Identities=11% Similarity=0.078 Sum_probs=152.7
Q ss_pred eEEeeeCCCcEEEEeCCCCceeEEeec---------------------------------cC------CCeeEEEEcC--
Q 013873 81 GFFSGSMDGDIRLWDIANRRTVCQYSG---------------------------------HQ------GAVRGLTVST-- 119 (434)
Q Consensus 81 ~l~sg~~dg~i~iwd~~~~~~~~~~~~---------------------------------h~------~~v~~i~~~~-- 119 (434)
.|.+|+..|.++|+-+.+++.+..+.- +. +.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 377899999999999888776655430 00 1122344444
Q ss_pred ---CCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEee-c-cCCCEEEEeC-----------
Q 013873 120 ---DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH-Q-WEGDLFATAG----------- 182 (434)
Q Consensus 120 ---~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~----------- 182 (434)
||++++.+.. ++.|.+.|+.+.+..... ..........+++ + |++.++.+++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-----------~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-----------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-----------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-----------eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 7787777665 456999999877532211 1111233455665 4 7787777662
Q ss_pred ---------CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC--------------CcEEEEEccCCCcc
Q 013873 183 ---------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD--------------RSITLYDLRMSSPA 239 (434)
Q Consensus 183 ---------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 239 (434)
+.+.++|..+.+.+..+.... ....++++|++...++++..+ ..|.++|.......
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 258999999998888877543 456788999985444444333 34667765432110
Q ss_pred ---eEEEeeecCceeEEEeeCCCC--ccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCe---------
Q 013873 240 ---RKVIMRANEDCNCYSYDSRKL--DEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGR--------- 304 (434)
Q Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~--------- 304 (434)
..... -+.+.+.|.... ........ -.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 245 v~~Gk~~~----i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 245 IAAGDYQE----LNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp HHHTCSEE----ETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred ccCCCeeE----ECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 00000 034667777652 22111221 123456799999999866655 67899999998653
Q ss_pred ---eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 305 ---SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 305 ---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
...... -......++|+|+|...++.-.|+.|.+||+.+
T Consensus 320 ~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 320 RSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 122222 225678999999994444556799999999987
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=1.1e-06 Score=73.54 Aligned_cols=215 Identities=9% Similarity=0.035 Sum_probs=134.2
Q ss_pred ccccccccCCCC--CeEEEEeCCCCCceEEeeeC--CCcEEEEeCCCCceeEEeeccCC-CeeEEEEcCCCCeEE-EeeC
Q 013873 56 RPFIGALDGHRD--GISCMAKNPNYLKGFFSGSM--DGDIRLWDIANRRTVCQYSGHQG-AVRGLTVSTDGRILV-SCGT 129 (434)
Q Consensus 56 ~~~~~~l~~h~~--~V~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~l~-s~~~ 129 (434)
...+.++ .|.. ....++|++++ .++++.+. ++.|.++|+.+++.+..+.-... ....+++. +..|+ +.-.
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 3445555 3443 46899999986 55555443 57999999999999888652221 22345554 44444 4456
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEec-CceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC---
Q 013873 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT--- 203 (434)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~--- 203 (434)
++.+.++|..+.+.... .... ..-+. +++++..++.++ +.+.++|..+.+.+..+....
T Consensus 85 ~~~v~viD~~t~~v~~~-------------i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN-------------FTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH 149 (266)
T ss_dssp CSEEEEEETTTTEEEEE-------------EECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred CCEEEEEECCCCcEEEE-------------EECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc
Confidence 78999999987754322 2111 11122 444555444444 469999999988887776432
Q ss_pred --CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 204 --DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 204 --~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
..+..+.|. ++ .+++....++.|.+.|..+++....+.+.+.... ............+.++|+|
T Consensus 150 p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~------------~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 150 RVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKK------------LIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp ECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH------------HHHTTCTTCCCEEEEEEET
T ss_pred ccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccc------------cccccccccCceEEEEEcC
Confidence 136678888 55 6676666788999999999888776643210000 0000001123568999999
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCC
Q 013873 282 TGRE-FVTGSYDRTIRIFQYNGG 303 (434)
Q Consensus 282 ~~~~-l~~~~~d~~i~iwd~~~~ 303 (434)
+++. ++++...+.|.+.++...
T Consensus 216 ~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCEEEEECCCCCeEEEEEEecc
Confidence 9875 555667788888887654
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.90 E-value=2.4e-07 Score=89.82 Aligned_cols=237 Identities=11% Similarity=0.058 Sum_probs=135.0
Q ss_pred CCcEEEEeCCCCceeEEeeccC-------------------------------CCeeEEEEcCCCCeEEEeeCCCc----
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQ-------------------------------GAVRGLTVSTDGRILVSCGTDCT---- 132 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~-------------------------------~~v~~i~~~~~~~~l~s~~~dg~---- 132 (434)
+|.|+.||..+|+.+..+.... .....++++|++..++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 6899999999999988765210 01125788888888888887764
Q ss_pred ---------------EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC---EEEEeC--CeEEEEeCCC
Q 013873 133 ---------------VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFATAG--AQVDIWNHNR 192 (434)
Q Consensus 133 ---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~i~i~d~~~ 192 (434)
|..||..+++....+......... +.............+|. .++.++ |.++++|..+
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd---~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 338 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD---YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT 338 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC---CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc---ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence 999999988765433221100000 00011111112222443 455554 6799999999
Q ss_pred CcceeeeecCC---------------------------------------CceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 193 SQPINSFQWGT---------------------------------------DTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 193 ~~~~~~~~~~~---------------------------------------~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
++.+....... ..-..++++|+. .++++...+....++..
T Consensus 339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~ 417 (689)
T 1yiq_A 339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHI 417 (689)
T ss_dssp CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECC
T ss_pred CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeec
Confidence 98874332111 001126778876 56666665554444443
Q ss_pred cCCC-------c--ce-EEEe-----------eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 234 RMSS-------P--AR-KVIM-----------RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 234 ~~~~-------~--~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
.... . .. .+.. ....++.++.+|.......-... +..++..-.+...+.++++|+.|
T Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTT
T ss_pred cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECCCEEEEECCC
Confidence 3210 0 00 0000 00013566777765543322221 12233333566678899999999
Q ss_pred CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE
Q 013873 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 330 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 330 (434)
|.|+.||.++++.+..+.........-+.|..+|+..+
T Consensus 496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 496 GRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 99999999999998887655433334467778887543
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=7.6e-08 Score=84.73 Aligned_cols=234 Identities=10% Similarity=0.028 Sum_probs=138.1
Q ss_pred ccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
...+...+.++...+++ . |..++.+ |..||. +++.+..+...........+. +..|..++.++.|..+|.. +
T Consensus 55 ~~~~~~~~~~~~~~~~g-~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g 126 (330)
T 3hxj_A 55 FKSGEIIECRPSIGKDG-T-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G 126 (330)
T ss_dssp SCGGGEEEECCEETTTT-E-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S
T ss_pred EecCCCcccceEEecCC-c-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C
Confidence 33344556777777775 3 5555554 888886 666554443333223333333 4467778888899999976 4
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
..... .......+.++...+++.+++... +.+..+|.. ++.+..+......+.++...+++ .++
T Consensus 127 ~~~~~------------~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~- 191 (330)
T 3hxj_A 127 TEKWR------------FKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIY- 191 (330)
T ss_dssp CEEEE------------EECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEE-
T ss_pred CEEEE------------EcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEE-
Confidence 32111 111112234445566777766654 779999998 77776666555667777777666 444
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
.++ +.|..|| .++...... ......+.++...++|. |..++.++.|..+|.
T Consensus 192 v~t--~~l~~~d-~~g~~~~~~-------------------------~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 192 FGS--DKVYAIN-PDGTEKWNF-------------------------YAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP 242 (330)
T ss_dssp EES--SSEEEEC-TTSCEEEEE-------------------------CCSSCCCSCCEECTTSC-EEEEETTTEEEEECT
T ss_pred EEe--CEEEEEC-CCCcEEEEE-------------------------ccCCcceeceEECCCCe-EEEEcCCCeEEEECC
Confidence 444 7788888 444332221 11234567778888775 555666788888885
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
++.....+.... ..+.++.+.+++. |..++.+|.|..+|. +++.+..
T Consensus 243 -~g~~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 243 -DGTEKWRFKTGK-RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp -TSCEEEEEECSS-CCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred -CCCEeEEeeCCC-CccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence 444444443322 2334456665665 566778888999996 5655433
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=8.3e-07 Score=73.28 Aligned_cols=202 Identities=11% Similarity=0.091 Sum_probs=128.3
Q ss_pred ccccccccCCCCC--eEEEEeCCCCCceEEeeeCCC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCC
Q 013873 56 RPFIGALDGHRDG--ISCMAKNPNYLKGFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTD 130 (434)
Q Consensus 56 ~~~~~~l~~h~~~--V~~~~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~d 130 (434)
-+.+.++ .|... ...+.|+ ++ .++.+.+.+| .|+++|+.+++.+..+... .........+++..|... ..+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeC
Confidence 3445555 45443 4788998 55 7777777766 8999999999998887643 344343333334455544 458
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--eEEEEeCCCCcceeeeecCC-----
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGT----- 203 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~----- 203 (434)
+.+.+||..+.+.... +.....-+ .+.+++..++.+++ .|.++|..+.+.+..+....
T Consensus 107 ~~v~v~D~~t~~~~~t-------------i~~~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRS-------------FNYDGEGW--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp SEEEEEETTTCCEEEE-------------EECSSCCC--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred CEEEEEECccCcEEEE-------------EECCCCce--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 8999999988754322 22222112 23345665555553 59999999998887776521
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 283 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 283 (434)
..++.+.|. ++ .+++..-.+..|.+.|..+++....+.+.+... ............+.|||+|++
T Consensus 172 ~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~-------------~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 172 PELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILA-------------EAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp CCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGG-------------GSCSCCSSCCCEEEEEEETTT
T ss_pred cccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCcc-------------ccccccCcCCceEEEEEcCCC
Confidence 334567776 45 677666678899999999988877664321110 000001123467899999998
Q ss_pred CEEEEEeC
Q 013873 284 REFVTGSY 291 (434)
Q Consensus 284 ~~l~~~~~ 291 (434)
+.|++.+.
T Consensus 237 ~~lfVTGK 244 (262)
T 3nol_A 237 HRLFVTGK 244 (262)
T ss_dssp TEEEEEET
T ss_pred CEEEEECC
Confidence 87777764
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=1e-06 Score=72.70 Aligned_cols=193 Identities=9% Similarity=0.073 Sum_probs=124.1
Q ss_pred ceeEEeeccCC--CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceE--EEeeccCC
Q 013873 100 RTVCQYSGHQG--AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW--AVDHQWEG 175 (434)
Q Consensus 100 ~~~~~~~~h~~--~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 175 (434)
+.+.++. |.. ....+.|+ ++.++.+.+.+|.|+++|+.+++..... ...... .++...+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--------------l~~~~FgeGit~~g~~ 107 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--------------RLGNIFAEGLASDGER 107 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--------------ECTTCCEEEEEECSSC
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--------------CCCCcceeEEEEeCCE
Confidence 3445554 443 34688887 4567778888899999999998654332 122222 24444333
Q ss_pred CEEEEe-CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 176 DLFATA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 176 ~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
.+.++. ++.+.+||..+.+.+.++..... -..++ +++.. |+.+..++.|.++|..+.+...++......
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g------ 177 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRG------ 177 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTE-EEEECSSSEEEEECTTTCCEEEEEECEETT------
T ss_pred EEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCC------
Confidence 333333 36699999999999988876432 23444 44644 444556889999999988877766432210
Q ss_pred eeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc------------CCccEEEEEE
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK------------RMQRVFCVKF 322 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~ 322 (434)
..-..++.+.|. +|..++..-.++.|.+.|..+++....+... ...-.+.++|
T Consensus 178 --------------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 178 --------------QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp --------------EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred --------------cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 012245667776 7765555556889999999999988777432 1235789999
Q ss_pred cCCCCEEEEee
Q 013873 323 SCDASYVISGS 333 (434)
Q Consensus 323 s~~~~~l~s~~ 333 (434)
+|+++.|+..+
T Consensus 243 dp~~~rlfVTG 253 (268)
T 3nok_A 243 EPGSGRIFMTG 253 (268)
T ss_dssp CTTTCCEEEEE
T ss_pred cCCCCEEEEeC
Confidence 99765554444
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.85 E-value=2.4e-06 Score=69.90 Aligned_cols=195 Identities=11% Similarity=0.141 Sum_probs=122.6
Q ss_pred ceeEEeeccCC--CeeEEEEcCCCCeEEEeeCC--CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC
Q 013873 100 RTVCQYSGHQG--AVRGLTVSTDGRILVSCGTD--CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG 175 (434)
Q Consensus 100 ~~~~~~~~h~~--~v~~i~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (434)
+.+.++. |.. -...+.|++ +.++.+.+.+ +.|+.+|+.+++.... ...............+
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-------------~~l~~~~fgeGi~~~~ 74 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR-------------AEVPPPYFGAGIVAWR 74 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE-------------EECCTTCCEEEEEEET
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE-------------EeCCCCcceeEEEEeC
Confidence 3455553 543 456899986 5566666665 4899999998855332 2222222222222223
Q ss_pred CEEE--Ee-CCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 176 DLFA--TA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 176 ~~~~--~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
..+. +. ++.+.+||..+.+.+.++..... -..++ +++..++++ ..++.|.++|..+.+...++......
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g---- 146 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGG---- 146 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETT----
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCC----
Confidence 3332 22 36799999999999998876433 24444 456455555 45889999999988877666432110
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEecc------------CCccEEEE
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK------------RMQRVFCV 320 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~ 320 (434)
..-..++.+.|. +|+.++..-.+..|.+.|..+++....+... .....+.+
T Consensus 147 ----------------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 147 ----------------RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp ----------------EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred ----------------cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEE
Confidence 011245566665 6766655556889999999999988777422 22357899
Q ss_pred EEcCCCCEEEEeeC
Q 013873 321 KFSCDASYVISGSD 334 (434)
Q Consensus 321 ~~s~~~~~l~s~~~ 334 (434)
+++|+++.|+..+.
T Consensus 210 A~d~~~~~lfVTGK 223 (243)
T 3mbr_X 210 AFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99997776665553
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=4.7e-07 Score=85.65 Aligned_cols=268 Identities=10% Similarity=0.028 Sum_probs=147.6
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccC----CCeeE-EEEcCCCCeEEEeeC------CCcEEEeeCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ----GAVRG-LTVSTDGRILVSCGT------DCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-i~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 148 (434)
..++.++.|+.|..+|..+++.+..+.... ..+.+ .... ++ .+++++. +|.|..+|..+++......
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 567788889999999999999887765321 01211 1111 34 4555554 7999999999887654322
Q ss_pred CCCCC-----------CCce---------------eEEEecCceEEEeeccCCCEEEEeC------------------Ce
Q 013873 149 STDNS-----------SEPL---------------AVYVWKNSFWAVDHQWEGDLFATAG------------------AQ 184 (434)
Q Consensus 149 ~~~~~-----------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 184 (434)
..... ..+. ...........+++.++...+..+. +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 21100 0000 0000000001233444433443332 24
Q ss_pred EEEEeCCCCcceeeeecCC----------CceEEEEEcCCCC--cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeE
Q 013873 185 VDIWNHNRSQPINSFQWGT----------DTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNC 252 (434)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 252 (434)
|..+|..+++.+..++... .++. +....++. .+++.++.+|.+.++|..+++............ -.
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~-w~ 351 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN-VF 351 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC-SE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc-cc
Confidence 8899999999887776421 1111 22223452 357778899999999999887766543321000 00
Q ss_pred EEeeCCCCc-------------cceeeeeCccc--CeEEEEEccCCCEEEEEe---------------------------
Q 013873 253 YSYDSRKLD-------------EAKCVHMGHES--AVMDIDYSPTGREFVTGS--------------------------- 290 (434)
Q Consensus 253 ~~~~~~~~~-------------~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~--------------------------- 290 (434)
.-.+..... .......+..+ .-..++++|+..+|++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 001100000 00000000000 012467788777666553
Q ss_pred ----------CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 291 ----------YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 291 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
.+|.|..||+.+++.+..+.... .+.+..+...+..++.++.||.|+.||..+++.+..+.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 35789999999998776664432 22222333356677789999999999999999886654
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=3.7e-07 Score=88.21 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=153.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccC----CCeeE-EEEcCCCCeEEEeeC------CCcEEEeeCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ----GAVRG-LTVSTDGRILVSCGT------DCTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-i~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 148 (434)
..++.++.||.|..+|..+|+.+..+.... ..+.+ ..+ .++ .++++.. +|.|..+|..+++......
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 567888889999999999999988876421 11111 111 133 4555543 5899999999988764433
Q ss_pred CCCC-CCCc-----e-------------eEEEecCceEEEeeccCCCEEEEeC--C-------------------eEEEE
Q 013873 149 STDN-SSEP-----L-------------AVYVWKNSFWAVDHQWEGDLFATAG--A-------------------QVDIW 188 (434)
Q Consensus 149 ~~~~-~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------~i~i~ 188 (434)
.... .... . ...........+++.++..+++.+. + .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 2110 0000 0 0001111223456666666655543 2 38899
Q ss_pred eCCCCcceeeeecCC---------CceEEEEEcCCCC--cEEEEEecCCcEEEEEccCCCcceEEEeeec--------Cc
Q 013873 189 NHNRSQPINSFQWGT---------DTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRAN--------ED 249 (434)
Q Consensus 189 d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~ 249 (434)
|..+++.+..++... .......+..++. ..++.++.+|.++++|..+++.+........ ..
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 999999988776521 2222222223442 2688899999999999999887644322110 00
Q ss_pred eeEEEe-eCCCCccceeeeeCccc--CeEEEEEccCCCEEEEE------------------------------------e
Q 013873 250 CNCYSY-DSRKLDEAKCVHMGHES--AVMDIDYSPTGREFVTG------------------------------------S 290 (434)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~------------------------------------~ 290 (434)
+..... +............+..+ .-..++++|+..+++.. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000000 00000000000000000 01125677766655431 1
Q ss_pred CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 291 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 291 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.+|.|..||+.+++..-..... .......+...+.++++++.||.|++||..+++.+..+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 3478999999999987665443 23333444557788999999999999999999987655
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=3.1e-05 Score=68.43 Aligned_cols=243 Identities=12% Similarity=0.080 Sum_probs=146.1
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLT 144 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~ 144 (434)
.+..+|.+..++. .++++ . ...|+..++........+.. ...+..++|++.+..|+.+ ...+.|..+++......
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-C-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCCcccccccCc-eeEee-c-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 4556677777753 33333 3 34688888876655444443 3457899999766656554 45688988988654211
Q ss_pred CCCCCCCCCCCceeEEE-ecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.... .......+++.+.+ .++.+.. +.|.+.++........+...-.....++++|.+..+++
T Consensus 109 -------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 109 -------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp -------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred -------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEE
Confidence 1111 11234567777644 4444443 46888988765433333333456789999997766776
Q ss_pred EEecC-CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 013873 221 TTASD-RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIF 298 (434)
Q Consensus 221 ~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iw 298 (434)
+-... +.|..+++...... .+ ....-...+.++++|++..|+.+. ..+.|..+
T Consensus 176 td~~~~~~I~r~~~dG~~~~-~~------------------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRR-II------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp EECSSSCEEEEEETTSCSCE-ES------------------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccCCCCEEEEEeCCCCCcE-EE------------------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 66555 77877776543211 00 011234578899998776665554 46789999
Q ss_pred eCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
|+........+... .....++++. .+.++++-...+.|..++..+++.+..+
T Consensus 231 ~~dG~~~~~~~~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 231 NLDGSHRKAVISQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp ETTSCSCEEEECSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCceEEEEeCC-CCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 98764433333222 2456778883 4555555556778888886666655444
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.74 E-value=4.4e-06 Score=68.37 Aligned_cols=202 Identities=10% Similarity=0.057 Sum_probs=125.2
Q ss_pred cccccccCCC--CCeEEEEeCCCCCceEEeeeCCC--cEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCC
Q 013873 57 PFIGALDGHR--DGISCMAKNPNYLKGFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDC 131 (434)
Q Consensus 57 ~~~~~l~~h~--~~V~~~~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg 131 (434)
..+.++ .|. .-...+.|++ + .++.+.+.+| .|+++|+.+++.+..+.... ..........+..| .....++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCC
Confidence 344555 454 4466899987 4 6666666654 89999999999988876332 33333223333444 4445689
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC-----C
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT-----D 204 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~-----~ 204 (434)
.+.+||..+.+.... +.....-+.++ +++..+..++ +.|.++|..+.+.+..+.... .
T Consensus 86 ~v~v~D~~tl~~~~t-------------i~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR-------------FRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLD 150 (243)
T ss_dssp EEEEEETTTTEEEEE-------------EECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred EEEEEECCcCcEEEE-------------EeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence 999999987754332 22222223443 3454444444 459999999998887776532 3
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
.++.+.+. ++ .+++..-.+..|.+.|..+++....+.+.+..... ...........+.|+++|+++
T Consensus 151 ~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~------------~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 151 NLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA------------DALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp CEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT------------TSCCCTTSSCEEEEEEETTTT
T ss_pred cceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc------------ccccCCcCCceEEEEEcCCCC
Confidence 45667766 34 66666656789999999999887776543221100 000011234678999999887
Q ss_pred EEEEEeC
Q 013873 285 EFVTGSY 291 (434)
Q Consensus 285 ~l~~~~~ 291 (434)
.|+..+.
T Consensus 217 ~lfVTGK 223 (243)
T 3mbr_X 217 RLFVTGK 223 (243)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 7666663
No 253
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.71 E-value=4.7e-07 Score=87.61 Aligned_cols=243 Identities=12% Similarity=0.101 Sum_probs=133.8
Q ss_pred EEEeCC-CCCceEEeeeCCC-----------cEEEEeCCCCce--eEEeec-cCCCeeEEEEcCCCCeEEEeeC-CCcEE
Q 013873 71 CMAKNP-NYLKGFFSGSMDG-----------DIRLWDIANRRT--VCQYSG-HQGAVRGLTVSTDGRILVSCGT-DCTVK 134 (434)
Q Consensus 71 ~~~~~~-~~~~~l~sg~~dg-----------~i~iwd~~~~~~--~~~~~~-h~~~v~~i~~~~~~~~l~s~~~-dg~v~ 134 (434)
++++.+ ++ .+++.|+.++ .+.+||..+++- +..+.. +.....++++..++.+++.||. ++.+.
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 456666 66 7888877543 588999887753 222322 3333445778889999999884 46899
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCcceee-----eec
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINS-----FQW 201 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~-----~~~ 201 (434)
+||..+.......... ......++...+++.+++.++ .++.+||..+.+-... ...
T Consensus 269 ~yd~~t~~W~~~~~~~-----------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~ 337 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQ-----------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337 (656)
T ss_dssp EEEGGGTEEEECCCCS-----------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred EecCcCCceeECCCCC-----------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence 9998766543221100 011122344556888888877 3589999987653221 000
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCc---------EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee----e
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRS---------ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH----M 268 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 268 (434)
....- ...+..++ .+++.|+.+|. +..||..+......... ... .
T Consensus 338 ~~~~~-~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~--------------------~~~~~~~~ 395 (656)
T 1k3i_A 338 LTADK-QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK--------------------RQSNRGVA 395 (656)
T ss_dssp CCCCT-TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE--------------------CEETTEEC
T ss_pred ccccc-cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCc--------------------cccccccC
Confidence 00000 01122333 55566665554 44555544322111000 000 0
Q ss_pred CcccCeEEEEEcc-CCCEEEEEeCCC-----------cEEEEeCCCCeeeeEE--eccCCccEEEEEEcCCCCEEEEeeC
Q 013873 269 GHESAVMDIDYSP-TGREFVTGSYDR-----------TIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 269 ~~~~~i~~~~~sp-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
.....-.++.|.. ++++++.|+.++ .|.+||..+....... .......-.+++..|++++++.|+.
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ 475 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCc
Confidence 0011223444443 677888887543 6888888876654332 1111112235567789999999986
Q ss_pred C-----------CcEEEeecCccc
Q 013873 335 D-----------TNLRLWKAKASE 347 (434)
Q Consensus 335 d-----------g~v~vw~~~~~~ 347 (434)
+ ..+.+||..+.+
T Consensus 476 ~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 476 RRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred ccCcCcCCCCcccceEEEcCCCCc
Confidence 4 468999987654
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.69 E-value=4.3e-06 Score=69.03 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=125.2
Q ss_pred ccccccCCCC--CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeE--EEEcCCCCeEEEeeCCCcE
Q 013873 58 FIGALDGHRD--GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG--LTVSTDGRILVSCGTDCTV 133 (434)
Q Consensus 58 ~~~~l~~h~~--~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--i~~~~~~~~l~s~~~dg~v 133 (434)
.+.++ .|.. -...+.|+. + .++.+.+.+|.|+++|+.+++.+..+ - ...... +++..+ ...+....++.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~-~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGE-RLYQLTWTEGLL 118 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSS-CEEEEESSSCEE
T ss_pred EEEEE-cCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCC-EEEEEEccCCEE
Confidence 44555 3443 347888874 3 77788888899999999999988877 2 233433 555433 344444568899
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcceeeeecCC-----Cce
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT-----DTV 206 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~-----~~i 206 (434)
.+||..+.+.+..+ .....-+.++ +++..++.++ +.|.++|..+.+.+..+.... ..+
T Consensus 119 ~V~D~~Tl~~~~ti-------------~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 119 FTWSGMPPQRERTT-------------RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp EEEETTTTEEEEEE-------------ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEECCcCcEEEEE-------------eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 99999887543322 2222212333 4566555554 459999999998887776522 245
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEE
Q 013873 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 286 (434)
+.+.|. +| .+++....+..|.+.|..+++....+.+.+..... .. .........+.|||+|+++.|
T Consensus 184 NeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-----------~~-~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 184 NELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-----------AG-QVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp EEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-----------TT-TCCCTTCCEEEEEECTTTCCE
T ss_pred cccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-----------cc-cccCcCCceEEEEEcCCCCEE
Confidence 667777 45 66766667889999999999887776443110000 00 001123467899999987766
Q ss_pred EEEe
Q 013873 287 VTGS 290 (434)
Q Consensus 287 ~~~~ 290 (434)
+..+
T Consensus 250 fVTG 253 (268)
T 3nok_A 250 FMTG 253 (268)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6555
No 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.68 E-value=0.00011 Score=63.89 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=134.8
Q ss_pred CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCce
Q 013873 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSF 166 (434)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (434)
..|+..|+.+......+. .-..+.+++|++.+..|+.+ ..++.|..+++...... ........ .....
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQAP 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCC
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---------cccEEEEeCCCCCc
Confidence 569999998876655544 34567899999866555544 45688999998652100 01111111 11234
Q ss_pred EEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC-CcEEEEEccCCCcceEE
Q 013873 167 WAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKV 242 (434)
Q Consensus 167 ~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 242 (434)
..+++.+.+ .++++.. +.|.++++........+...-.....++++|.+..++++.... +.|..+++..... ..+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEE
Confidence 677787644 4444433 5699999875443333333345678999998775666665443 6777777643211 111
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEec-cCCccEEEE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHT-KRMQRVFCV 320 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~ 320 (434)
....-...+.++++|++..|+.+. ..+.|..+|+........... ........+
T Consensus 159 ------------------------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~gi 214 (316)
T 1ijq_A 159 ------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (316)
T ss_dssp ------------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred ------------------------EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEE
Confidence 011234578899999877666554 557899999975443333222 122346678
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 321 KFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 321 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
++. .+.++++-...+.|..++..+++.+..+
T Consensus 215 av~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 215 AVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 885 3555555556788999988777655444
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.68 E-value=4.3e-05 Score=75.84 Aligned_cols=250 Identities=10% Similarity=0.066 Sum_probs=154.8
Q ss_pred eEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEe-eccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 69 V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
|.++...+++ . |..|+.++-|..||..+++..... ..+...|.++...+++.+.+ ++.++-+..||..++......
T Consensus 175 i~~i~~d~~g-~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGD-Q-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEETT-E-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCCC-C-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEee
Confidence 8888888876 4 444666556999998776543321 12346788888888776554 454445888997665432111
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee-------cCCCceEEEEEcCCCCcEEE
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-------WGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~ 220 (434)
........ .....+.++...++|.+.+...+.+.+||..++....... .....|.++...++| . |.
T Consensus 252 ~~~~~~~~-----l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lW 324 (795)
T 4a2l_A 252 HSPSNPKS-----ISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MW 324 (795)
T ss_dssp CCTTCTTS-----CSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EE
T ss_pred cCCCCccc-----cCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EE
Confidence 10000000 0134578888888888777666679999987665332211 123579999998877 3 55
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
.|+.++-|..|+........ +.. ... ...-....|.++...++|++ ..|+.++-|..||.
T Consensus 325 igt~~~Gl~~~~~~~~~~~~-~~~-------------~~~-----~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFKN-IRN-------------IPY-----KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNP 384 (795)
T ss_dssp EEESSSCEEEECGGGGSSEE-ECC-------------CTT-----SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECT
T ss_pred EEECCCCeEEeCCCcccceE-EcC-------------CCC-----CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcC
Confidence 67777788888875443211 100 000 00012456899999888874 45777767999998
Q ss_pred CCCeeeeEEec-------cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 301 NGGRSREIYHT-------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 301 ~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
.++........ .....|.+++..++++.|..|+.++.|..|+..+++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 87654332211 1135689999999998566677777799999877643
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=8e-06 Score=77.31 Aligned_cols=114 Identities=8% Similarity=0.021 Sum_probs=67.0
Q ss_pred ceEEeeeC-CCcEEEEeC-CCCceeEEeeccCCC-----------eeEEEEcCCCCe----EEEeeCCCcEEEeeCCCCC
Q 013873 80 KGFFSGSM-DGDIRLWDI-ANRRTVCQYSGHQGA-----------VRGLTVSTDGRI----LVSCGTDCTVKLWNVPVAT 142 (434)
Q Consensus 80 ~~l~sg~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~~----l~s~~~dg~v~iwd~~~~~ 142 (434)
..++.++. ++.|.-+|. .+|+.+..+...... ...+++.|.+.. |+.++.|+.|.-+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 45666776 899999999 899998877532210 123455443444 8888899999999998886
Q ss_pred CCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-------CCeEEEEeCCCCcceeeeec
Q 013873 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQW 201 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~ 201 (434)
........... . ...+.+--.-.++.+++.. ++.|+.+|..+++.+..+..
T Consensus 143 ~~W~~~~~~~~--~------~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 143 TVWKVENSDIK--V------GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEECCCGG--G------TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEeecCCCCC--c------cceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 54332111100 0 0000000000134444433 35799999999988766654
No 258
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=5.9e-05 Score=68.69 Aligned_cols=255 Identities=11% Similarity=0.126 Sum_probs=142.8
Q ss_pred CCeEEEEeCC-CCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC-C----cEEEeeCCC
Q 013873 67 DGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-C----TVKLWNVPV 140 (434)
Q Consensus 67 ~~V~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-g----~v~iwd~~~ 140 (434)
.....++++| ++ ..|+.+...+.|+.+|+.++...... ........++|++++++|+.+... + .+..++. .
T Consensus 137 ~~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3567899998 44 45655555588999998876644333 345568899999999966666542 2 2333332 2
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeeeec-CCCceEEEEEcCCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEP 216 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~ 216 (434)
+.. ..............++++| ++.++++.. +.|..++...+........ .......++|+|++.
T Consensus 214 g~~-----------~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 214 SGF-----------KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp GTS-----------CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred Cce-----------eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence 221 1111222334556788899 777776653 5699999886654222222 123467899999995
Q ss_pred cEEEEEecCCcEEEEEccCCCc-c-eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE-EEEEc--------cCCCE
Q 013873 217 NVLATTASDRSITLYDLRMSSP-A-RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM-DIDYS--------PTGRE 285 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s--------p~~~~ 285 (434)
.++++-...+.|..++...... . ....+.+.... ....... .....-.... .++.. ++|.+
T Consensus 283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~-------~g~~dg~-~~~a~~~~P~~gv~v~~~~y~~~D~~g~l 354 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGA-------KDWVDGV-GKKARMHAPRQGTFVKNPAYKGSSDEYDF 354 (430)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTC-------BCCBCEE-GGGCBBSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEEEEECCCCEEEEEeCCcccccccceEEEeccCCC-------CCCCCCC-CcceEeCCCcceEEEccccccccCCCCeE
Confidence 4677777788999988764311 0 00111111000 0000000 0000111233 45553 34666
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeEEecc--------C--------CccEEEEEEcCC-CCEEEEeeCCCcEEEeecC
Q 013873 286 FVTGSYDRTIRIFQYNGGRSREIYHTK--------R--------MQRVFCVKFSCD-ASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 286 l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~--------~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~~~ 344 (434)
+++-...+.|+.++. .+......... . -.....++++|+ +.++++-..++.|+.++++
T Consensus 355 yvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 355 YFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 666566778999884 45443333210 0 124789999994 6555555556778877653
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.64 E-value=5e-05 Score=68.13 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=142.9
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDS 146 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~ 146 (434)
.-+|.+..+. .+|+.+. ...|+.+++........+. ....+..++|.+.+..|+.+ ...+.|..+++......
T Consensus 78 ~~~C~~~~~~--~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-- 151 (386)
T 3v65_B 78 RRSCKALGPE--PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-- 151 (386)
T ss_dssp SSCEEECSSC--CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--
T ss_pred CCeECCcccc--ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--
Confidence 4456665554 3333333 3579999987766544444 34467899999765555544 45678988988654211
Q ss_pred CCCCCCCCCceeEEE-ecCceEEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEE
Q 013873 147 DDSTDNSSEPLAVYV-WKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (434)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 222 (434)
.... .......+++.+.+ .++++.. +.|.+.++........+...-.....+++.|.+..++++-
T Consensus 152 -----------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 152 -----------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp -----------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -----------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEec
Confidence 1111 11233456777644 4444433 4588888765543333333345678999998776666665
Q ss_pred ecC-CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeC
Q 013873 223 ASD-RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQY 300 (434)
Q Consensus 223 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~ 300 (434)
... +.|..+++...... .+ ....-...+.|+|+|++..|+.+ +..+.|..+|+
T Consensus 221 ~~~~~~I~r~~~dG~~~~-~~------------------------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGRR-II------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp CSSSCEEEEEETTSCSCE-EE------------------------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred cCCCCEEEEEeCCCCCcE-EE------------------------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 555 67777776543211 11 11223356889999876665555 45678999998
Q ss_pred CCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 301 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
........+... .....++++. .+.++++-...+.|..++..+++.+..+
T Consensus 276 dG~~~~~~~~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 276 DGSHRKAVISQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp TSCSCEEEECSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCeeEEEEECC-CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 764433333222 2456788883 4555555556788888886667665544
No 260
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.62 E-value=0.0001 Score=67.12 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=143.2
Q ss_pred CCeEEEEeCCC--CCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCC----c-EEEeeCC
Q 013873 67 DGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC----T-VKLWNVP 139 (434)
Q Consensus 67 ~~V~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg----~-v~iwd~~ 139 (434)
..-..++|+|+ . ..|+.+...+.|+.+|..++...... ........++|+++|. |+.+...+ . +...+..
T Consensus 139 ~~P~gvavd~~s~~-g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNY-DDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTT-CEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCC-CEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 45678999985 3 33444444489999999877655443 3445688999999999 54444322 1 2222221
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--CeEEEEeCCCCcceeee-ec-CCCceEEEEEcCC
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSF-QW-GTDTVISVRFNPA 214 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~-~~-~~~~i~~i~~~~~ 214 (434)
... ..............+++++ ++.++++.. +.|..+|..++.....+ .. ....-..++|+|+
T Consensus 216 -~~~-----------~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 216 -SGF-----------TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp -GTT-----------CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred -CCe-----------eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence 111 0011222334456678888 677666653 46999998866652222 21 1222346999999
Q ss_pred CCcEEEEEecCCcEEEEEccCC--CcceEEEeeec--CceeEEEeeCCCCccceeeeeCcccCeEEEEE---------cc
Q 013873 215 EPNVLATTASDRSITLYDLRMS--SPARKVIMRAN--EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY---------SP 281 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------sp 281 (434)
+..++++-...+.|..+++... .......+.+. ..+.. + .. .....-.....+++ .+
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~---d----g~---~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWV---D----GM---GTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCB---C----EE---GGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccC---C----Cc---ccceEEcCCccEEEEccccccccCC
Confidence 9546777677789999887632 11111111111 00000 0 00 00011234677899 67
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEecc----------------CCccEEEEEEc-CCCCEEEEeeCCCcEEEeecC
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTK----------------RMQRVFCVKFS-CDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~v~~~~~s-~~~~~l~s~~~dg~v~vw~~~ 344 (434)
+|.++++-...+.|+.++. ++......... .-.....|+++ +++.++++=..++.|+.++++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7777777777788999985 45443332111 01236789999 567666665567778877653
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.59 E-value=7.7e-05 Score=61.95 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=133.1
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec-cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCC
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~ 139 (434)
.+.|-.+.+..++|+|++..++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999874566667788999999987 777777642 12467788999988877776677889999886
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-C---eEEEEeC-CCCcceeeee-------cCCCceE
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-A---QVDIWNH-NRSQPINSFQ-------WGTDTVI 207 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~i~i~d~-~~~~~~~~~~-------~~~~~i~ 207 (434)
............ ...........+..++++|.+..+.++. . .|..|+- .....+..+. .+...+.
T Consensus 100 ~~~~i~~~~~~~---~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 100 PNSEVKILKKIK---IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp TTCCEEEEEEEE---CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCeeeeeeeec---cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 553210000000 0000012244568999999886555443 2 2555541 1111122111 1234578
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
+++++|...++++....+..+..+|.... ....+.+..... -+...-...-.|+|.|+|++.+
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~----------------~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSR----------------GLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGG----------------GCSSCCCSEEEEEECTTCCEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccC----------------CcccccCCCCeeEECCCCCEEE
Confidence 99999988788888888889999997643 333332211000 0000123567899999998544
Q ss_pred EEeCCCcEEEEeC
Q 013873 288 TGSYDRTIRIFQY 300 (434)
Q Consensus 288 ~~~~d~~i~iwd~ 300 (434)
+ +.-+.++.|.-
T Consensus 240 v-sE~n~~y~f~~ 251 (255)
T 3qqz_A 240 V-SEPNRFYRFTP 251 (255)
T ss_dssp E-ETTTEEEEEEC
T ss_pred E-cCCceEEEEEe
Confidence 4 66676766654
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=0.00022 Score=70.72 Aligned_cols=244 Identities=10% Similarity=0.137 Sum_probs=154.4
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec--------cCCCeeEEEEcCCCCeEEEeeCCCcEEEee
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--------HQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd 137 (434)
...|.++...++| . |..|+.++-|..||..++........ ....|.++...+++..|..|+.++-|..||
T Consensus 356 ~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 4569999998886 4 66677777899999877654332211 235789999888887466677777899999
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee------cCCCceEEEEE
Q 013873 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ------WGTDTVISVRF 211 (434)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~i~~ 211 (434)
..++......... .. .....+.++...++|.+.+...+.+.+||..+++...... .....|.++..
T Consensus 434 ~~~~~~~~~~~~~---~~-----l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 505 (795)
T 4a2l_A 434 RNSGQVENFNQRN---SQ-----LVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR 505 (795)
T ss_dssp TTTCCEEEECTTT---SC-----CSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred CCCCcEEEeecCC---CC-----cCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence 8766432211100 00 1234677888888888777666779999987765432211 12356889988
Q ss_pred cCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
.+++ .+.+ |+. +-|..||..+... .+. .... ........|.++...++|.+.++..
T Consensus 506 d~~g-~lWi-gt~-~Gl~~~~~~~~~~--~~~-------------~~~~-----~~~l~~~~i~~i~~d~~g~lWigT~- 561 (795)
T 4a2l_A 506 DSHK-RLWI-GGE-EGLSVFKQEGLDI--QKA-------------SILP-----VSNVTKLFTNCIYEASNGIIWVGTR- 561 (795)
T ss_dssp CTTC-CEEE-EES-SCEEEEEEETTEE--EEC-------------CCSC-----SCGGGGSCEEEEEECTTSCEEEEES-
T ss_pred CCCC-CEEE-EeC-CceEEEeCCCCeE--EEe-------------cCCC-----CCCCCCCeeEEEEECCCCCEEEEeC-
Confidence 8877 4444 444 4588888765432 110 0000 0012345789999999988655443
Q ss_pred CCcEEEEeCCCCeeeeEEecc---CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 292 DRTIRIFQYNGGRSREIYHTK---RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 292 d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
. -|..||..++.... +... ....|.++..+++|.+.+++ . +-|..|+..+++
T Consensus 562 ~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 562 E-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEK 616 (795)
T ss_dssp S-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTE
T ss_pred C-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCc
Confidence 4 48889987765432 3211 13468899999999876655 3 457777776543
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=1.6e-05 Score=75.30 Aligned_cols=271 Identities=10% Similarity=0.054 Sum_probs=147.3
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeeccCC----Cee-EEEEcC---CCC-eEEEee------CCCcEEEeeCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG----AVR-GLTVST---DGR-ILVSCG------TDCTVKLWNVPVATLT 144 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~i~~~~---~~~-~l~s~~------~dg~v~iwd~~~~~~~ 144 (434)
..++.++.|+.|..+|..+|+.+........ .+. ...... +++ .+++++ .+|.|.-+|..+++..
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 5677888899999999999999877653221 111 111111 233 566654 3789999999988765
Q ss_pred CCCCCCCCCC---------------Cc--------------eeEEEecCceEEEeeccCCCEEEEeC-------------
Q 013873 145 DSDDSTDNSS---------------EP--------------LAVYVWKNSFWAVDHQWEGDLFATAG------------- 182 (434)
Q Consensus 145 ~~~~~~~~~~---------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 182 (434)
-......... .. .............++.++..++..+.
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~ 277 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA 277 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence 4321110000 00 00000000112234445444443221
Q ss_pred -------------CeEEEEeCCCCcceeeeecCC----------CceEEEEEc-CCCC--cEEEEEecCCcEEEEEccCC
Q 013873 183 -------------AQVDIWNHNRSQPINSFQWGT----------DTVISVRFN-PAEP--NVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 183 -------------~~i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~-~~~~--~~l~~~~~dg~i~iwd~~~~ 236 (434)
+.|..+|..+++.+..++... .++. +... .++. .+++.++.+|.++++|..++
T Consensus 278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 368999999999988775421 1121 1221 3443 37888999999999999998
Q ss_pred CcceEEEeeecC---------ceeEEEeeCCCC---------ccceeeeeCccc--CeEEEEEccCCCEEEEEe------
Q 013873 237 SPARKVIMRANE---------DCNCYSYDSRKL---------DEAKCVHMGHES--AVMDIDYSPTGREFVTGS------ 290 (434)
Q Consensus 237 ~~~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~------ 290 (434)
+.+......... .+..+....... ........+..+ .-..++++|+..++++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 877655432210 011010000000 000000000000 012456677655554432
Q ss_pred ---------------------------CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 291 ---------------------------YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 291 ---------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.+|.|.-||+.+++..-...... ++..-.....+.+++.|+.||.++.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 25789999999998776554332 2222122224667888999999999999
Q ss_pred CcccccccCC
Q 013873 344 KASEQLGVLH 353 (434)
Q Consensus 344 ~~~~~~~~~~ 353 (434)
.+|+.+-.+.
T Consensus 515 ~tG~~lW~~~ 524 (582)
T 1flg_A 515 KSGKELWKFQ 524 (582)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9999986654
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=1.4e-05 Score=78.55 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=89.7
Q ss_pred CeEEEEeC-CCCCceEEee-eCCC----cEEEEeCCCC-ceeE-EeeccCCCeeEEEEcCCCCeEEEeeCC-----CcEE
Q 013873 68 GISCMAKN-PNYLKGFFSG-SMDG----DIRLWDIANR-RTVC-QYSGHQGAVRGLTVSTDGRILVSCGTD-----CTVK 134 (434)
Q Consensus 68 ~V~~~~~~-~~~~~~l~sg-~~dg----~i~iwd~~~~-~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~ 134 (434)
.+...+|| ||| ++||-+ +.+| +|+++|+.++ +.+. .+.. ....+.|+|||+.|+....| ..|.
T Consensus 175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 999 666633 3333 4999999988 6322 1221 23568899999888877665 2577
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEE--ecCceEEEeeccCCCEEEEeC-----CeEEEEeCCCCc--c--eeeeecCC
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEGDLFATAG-----AQVDIWNHNRSQ--P--INSFQWGT 203 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~--~--~~~~~~~~ 203 (434)
++++.++.. .....+. .......+.++|+|+.++... ..|.++|+.++. . ........
T Consensus 251 ~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 251 RHVMGKLQS-----------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp EEETTSCGG-----------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred EEECCCCch-----------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 777765421 1112221 122345778999999776543 348899998752 2 22222233
Q ss_pred CceEEEEEcCCCCcEEEEEecC--C--cEEEEEcc
Q 013873 204 DTVISVRFNPAEPNVLATTASD--R--SITLYDLR 234 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~d--g--~i~iwd~~ 234 (434)
....++.|+. +..+++.+..+ + .|..+|+.
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence 4455566554 43555555544 3 44455543
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.56 E-value=9.7e-06 Score=78.37 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=121.9
Q ss_pred CCcEEEEeCCCCceeEEeeccC-------------------------------CCeeEEEEcCCCCeEEEeeCCCc----
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQ-------------------------------GAVRGLTVSTDGRILVSCGTDCT---- 132 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~-------------------------------~~v~~i~~~~~~~~l~s~~~dg~---- 132 (434)
+|.|..+|..+|+.+..+.... .....+++.++...++.+..++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999988775211 01124678887788888877663
Q ss_pred ---------------EEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCC---EEEEeC--CeEEEEeCCC
Q 013873 133 ---------------VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFATAG--AQVDIWNHNR 192 (434)
Q Consensus 133 ---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~i~i~d~~~ 192 (434)
|..+|..+++.............. +....+.....+..+|. .++.++ |.++++|..+
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd---~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD---FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC---CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc---ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence 888998888654333221100000 00001112222223453 344444 6799999999
Q ss_pred CcceeeeecCCC------------c------------------------eEEEEEcCCCCcEEEEEecCCcEEEEEccC-
Q 013873 193 SQPINSFQWGTD------------T------------------------VISVRFNPAEPNVLATTASDRSITLYDLRM- 235 (434)
Q Consensus 193 ~~~~~~~~~~~~------------~------------------------i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~- 235 (434)
++.+........ . -..++++|+. .++++...+-...+.....
T Consensus 334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~ 412 (668)
T 1kv9_A 334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPYQEVPGVYRNEGKD 412 (668)
T ss_dssp CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEECCCGGG
T ss_pred CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEeccccceEeeeeccc
Confidence 988744332110 0 0114566655 3333322221111100000
Q ss_pred CC-----cce-----EEEe-eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 013873 236 SS-----PAR-----KVIM-RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304 (434)
Q Consensus 236 ~~-----~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 304 (434)
.. ... .... ....++.++.+|.......-... +..+.....+...+.++++++.|+.|+.||..+++
T Consensus 413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 00 000 0000 11123556666655433222221 12223333444578889999999999999999999
Q ss_pred eeeEEeccCCccEEEEEEcCCCC-EEEEe
Q 013873 305 SREIYHTKRMQRVFCVKFSCDAS-YVISG 332 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 332 (434)
.+..+.......-.-+.+..+|+ +++.+
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEE
Confidence 88777554311112244445666 44433
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=9e-05 Score=66.50 Aligned_cols=207 Identities=13% Similarity=-0.026 Sum_probs=125.5
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~ 144 (434)
......++|++.+..++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.+++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~- 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR- 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence 34578899997653566666677889999987665444333333455678888755544 4445567888888754321
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCE-EEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL-FATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.............+++.|.+.. +.+.. +.|..+++............-.....|+++|++..+++
T Consensus 194 -----------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 194 -----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp -----------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred -----------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 1111111234577888876554 44432 35888887654433333333345789999987767777
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+-+..+.|..+|+..... ..+. .........+++ ..+.++++-...+.|..+|.
T Consensus 263 aD~~~~~I~~~d~dG~~~-~~~~------------------------~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHR-KAVI------------------------SQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EETTTTEEEEECTTSCSC-EEEE------------------------CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEeCCCCee-EEEE------------------------ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 777778898888764221 1111 112234567777 34555666666788999986
Q ss_pred CCCeeeeEEe
Q 013873 301 NGGRSREIYH 310 (434)
Q Consensus 301 ~~~~~~~~~~ 310 (434)
.+++....+.
T Consensus 317 ~~G~~~~~i~ 326 (386)
T 3v65_B 317 FTGKNQEIIR 326 (386)
T ss_dssp TTCCSCEEEE
T ss_pred CCCcceEEEc
Confidence 6666555554
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.53 E-value=0.00017 Score=63.74 Aligned_cols=204 Identities=13% Similarity=-0.027 Sum_probs=124.2
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~ 145 (434)
.....++|++....++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.+++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence 4578999997653555666677889999987765444333333456788998755444 4545567899998864321
Q ss_pred CCCCCCCCCCceeEE-EecCceEEEeeccCCC-EEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 146 SDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGD-LFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.... ........+++.|.+. ++.+.. +.|..+++........+...-.....++++|++..+++
T Consensus 151 -----------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 151 -----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp -----------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred -----------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEE
Confidence 1111 1123457788888544 444443 44888887654333322323345789999987767777
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+-...+.|..+|+..... ..+. ........++++ ..+.++++-...+.|..++.
T Consensus 220 aD~~~~~I~~~~~dG~~~-~~~~------------------------~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 220 VDAKHHVIERANLDGSHR-KAVI------------------------SQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp EETTTTEEEEEETTSCSC-EEEE------------------------CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEeCCCCce-EEEE------------------------eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEc
Confidence 777778899998764221 1111 112234566777 34555555556778888886
Q ss_pred CCCeeeeEE
Q 013873 301 NGGRSREIY 309 (434)
Q Consensus 301 ~~~~~~~~~ 309 (434)
.+++....+
T Consensus 274 ~~G~~~~~i 282 (349)
T 3v64_C 274 FTGKNQEII 282 (349)
T ss_dssp TTCCSCEEE
T ss_pred cCCCccEEe
Confidence 666554444
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.51 E-value=0.00048 Score=62.01 Aligned_cols=235 Identities=11% Similarity=0.039 Sum_probs=140.4
Q ss_pred eEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEEeeCCCCCCCCCCCCCCCCCCceeE
Q 013873 81 GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (434)
Q Consensus 81 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (434)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|..+++...... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------~~~~~~ 153 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTV 153 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CCCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------CcceEE
Confidence 344333 4689999988766554444 456788999998666565554 5678888887643110 011111
Q ss_pred EE-ecCceEEEeeccC-CCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec-CCcEEEEEcc
Q 013873 160 YV-WKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLR 234 (434)
Q Consensus 160 ~~-~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~iwd~~ 234 (434)
.. .......+++.+. +.++.+.. +.|.+.++........+...-.....|++.|.++.++++-.. .+.|...++.
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 11 2234567888874 44444443 468888887665444444344567899999977566655433 3677777765
Q ss_pred CCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEec-c
Q 013873 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHT-K 312 (434)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~ 312 (434)
...... + ....-...+.|+++|++..|+.+. ..+.|..+|+........... .
T Consensus 234 G~~~~~-~------------------------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 288 (400)
T 3p5b_L 234 GVDIYS-L------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 288 (400)
T ss_dssp SCSCEE-E------------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS
T ss_pred CCccEE-E------------------------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC
Confidence 432211 1 112234678899998777766664 467899999976544433332 1
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 313 ~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
......++++. .+.++++-...+.|..++..+++.+..+
T Consensus 289 ~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 289 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 22345677773 3445555556788999987777665544
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=5.7e-05 Score=66.03 Aligned_cols=211 Identities=11% Similarity=0.092 Sum_probs=117.3
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCC------C-ceeEEEecCceEEEeecc-CCCEEEEeC
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS------E-PLAVYVWKNSFWAVDHQW-EGDLFATAG 182 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 182 (434)
...+++|.+++.+++++..++.|..|+...+............. . .............+++.+ ++.++++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678899998878888889999999876543210000000000 0 000000112456788887 676666643
Q ss_pred -CeEEEEeCCCCcceeeeec-----CCCceEEEEEcC-CCCcEEEEEec-----------------CCcEEEEEccCCCc
Q 013873 183 -AQVDIWNHNRSQPINSFQW-----GTDTVISVRFNP-AEPNVLATTAS-----------------DRSITLYDLRMSSP 238 (434)
Q Consensus 183 -~~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~-~~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 238 (434)
+.+..+|..++.. ..+.. .......+++.+ ++ +++++... +|.|..||..+...
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 4588888765432 12211 112456788888 66 55544322 23444444332211
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCe--eeeEEeccCCc
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGR--SREIYHTKRMQ 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~ 315 (434)
. .........+.++++|+|+.|+.+ ...+.|.+|++.... ....+... .+
T Consensus 178 ~--------------------------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g 230 (322)
T 2fp8_A 178 T--------------------------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN 230 (322)
T ss_dssp E--------------------------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS
T ss_pred E--------------------------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC
Confidence 0 000112235679999999866655 456889999987532 11222221 13
Q ss_pred cEEEEEEcCCCCEEEEeeC----------CCcEEEeecCcccccccC
Q 013873 316 RVFCVKFSCDASYVISGSD----------DTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~ 352 (434)
...++++++|++.++... .+.|..++.. ++.+..+
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 778999999997766544 4667888764 5555444
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00068 Score=61.04 Aligned_cols=210 Identities=10% Similarity=-0.044 Sum_probs=125.4
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcCCCC-eEEEeeCCCcEEEeeCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVP 139 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~v~iwd~~ 139 (434)
....+..++|++....++++-...+.|+.+++... .....+...-.....+++.+.+. +.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34678899999866355556566788999998752 22333333345677899987444 44444557888888876
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
.... .............+++.|.+ .++.+.. +.|...++........+...-.....|++++.+
T Consensus 190 g~~~------------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 GVKR------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp TCSE------------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCce------------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC
Confidence 4421 11111123346788898854 4455542 358888886544433333333567899999887
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
..++++-...+.|..+|+..... ..+.. .........++++. .+.++++-...+.|
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~-~~~~~----------------------~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNR-KTILE----------------------DEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCC-EEEEE----------------------CSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred CEEEEEECCCCEEEEEeCCCCcc-EEEEe----------------------CCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 66777666678899998864322 11110 00112334566663 34455566667889
Q ss_pred EEEeCCCCeeeeEEe
Q 013873 296 RIFQYNGGRSREIYH 310 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~ 310 (434)
..+|..+++....+.
T Consensus 314 ~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 314 FSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEESSSCCCCEEEE
T ss_pred EEEEcCCCCceEEEe
Confidence 999977776665554
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=0.0002 Score=62.05 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=122.8
Q ss_pred ceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEE
Q 013873 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (434)
Q Consensus 100 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+.+..+.. ......++|+++++++++-..++.|..||.... .............+++.+++.+++
T Consensus 23 ~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--------------~~~~~~~~~~p~gia~~~dG~l~v 87 (306)
T 2p4o_A 23 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--------------QQIHATVEGKVSGLAFTSNGDLVA 87 (306)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--------------EEEEEECSSEEEEEEECTTSCEEE
T ss_pred eEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc--------------eEEEEeCCCCceeEEEcCCCcEEE
Confidence 44445542 245778999999886666667889999987532 112222334577889999999777
Q ss_pred EeCC--e--EEEEeCCCCcceeeeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEE
Q 013873 180 TAGA--Q--VDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254 (434)
Q Consensus 180 ~~~~--~--i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
+..+ . +..+|..+++....... .......++..+.+ ..+++-..++.|..+|...... .+ +.
T Consensus 88 ad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~--~v----------~~ 154 (306)
T 2p4o_A 88 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG--SI----------WL 154 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE--EE----------EE
T ss_pred EeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE--eE----------EE
Confidence 6632 3 77778777664332221 12223445555543 5555555678888888654211 00 00
Q ss_pred eeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCC-Cee--eeEEeccCCccEEEEEEcCCCCEEE
Q 013873 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNG-GRS--REIYHTKRMQRVFCVKFSCDASYVI 330 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~ 330 (434)
.+.. ... . .....-...+.+ +|++++|+.+ ...+.|..||+.. +.. ...+... .....++++++|++++
T Consensus 155 ~~~~-~~~-~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 155 EHPM-LAR-S-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYG 227 (306)
T ss_dssp ECGG-GSC-S-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEE
T ss_pred ECCc-ccc-c-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEE
Confidence 0000 000 0 000111234455 7888766555 4567899999875 322 1122111 2356789999999877
Q ss_pred EeeCCCcEEEeecCcccc
Q 013873 331 SGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 331 s~~~dg~v~vw~~~~~~~ 348 (434)
+....+.|.+++.. ++.
T Consensus 228 a~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 228 ATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp ECBTTCCEEEECTT-CCE
T ss_pred EeCCCCeEEEECCC-CCE
Confidence 77778899999975 544
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.44 E-value=0.00043 Score=60.12 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=133.2
Q ss_pred CCcEEEEeCCCCc--eeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecC
Q 013873 88 DGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (434)
Q Consensus 88 dg~i~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (434)
...|+..++.... ....+. .-..+.+++|.+.+..|+.+ ...+.|..+++..... ..........
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC
Confidence 4579999998763 222222 22356689999855555544 4567888888865421 1111122223
Q ss_pred ceEEEeeccC-CCEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEe-cCCcEEEEEccCCCcce
Q 013873 165 SFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPAR 240 (434)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 240 (434)
....+++.+. +.++.+.. +.|.++++........+.........+++.|.++.++++-. ..+.|..+++..... .
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence 4556788864 44545533 46999998765433333333456789999987655555542 256777777653221 1
Q ss_pred EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 241 KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
.+ ....-...+.++++|++..|+.+. ..+.|..+|+......... ........+
T Consensus 159 ~~------------------------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~~~~P~g 213 (318)
T 3sov_A 159 II------------------------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPFA 213 (318)
T ss_dssp EE------------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSCCSCEEE
T ss_pred EE------------------------EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCCCCCceE
Confidence 11 011223568899999766665554 5678999998754433333 222345677
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+++.. +.++.+-...+.|..++..+++....+
T Consensus 214 lav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 214 LTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 88753 344555556788999998777765443
No 273
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=7.8e-05 Score=70.52 Aligned_cols=81 Identities=9% Similarity=-0.034 Sum_probs=46.9
Q ss_pred ceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCE
Q 013873 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328 (434)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 328 (434)
.+.++.+|.......-.... ...+....+...+..++.++.||.|+.||..+++.+..+.........-+.+..+|+.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 45666776654333222211 1222222233356778889999999999999999988776543221222445567765
Q ss_pred EEE
Q 013873 329 VIS 331 (434)
Q Consensus 329 l~s 331 (434)
++.
T Consensus 521 yv~ 523 (571)
T 2ad6_A 521 YIG 523 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 274
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00062 Score=62.24 Aligned_cols=266 Identities=9% Similarity=0.040 Sum_probs=145.4
Q ss_pred CeEEEEeCCC-CCceEEeeeCCCcEEEEeCCCCceeEEeecc---CCCeeEEEE-------cCCCCeEEEeeCCC-c---
Q 013873 68 GISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQYSGH---QGAVRGLTV-------STDGRILVSCGTDC-T--- 132 (434)
Q Consensus 68 ~V~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~i~~-------~~~~~~l~s~~~dg-~--- 132 (434)
.-..|+|+|. ...++++....+.|++.|+.++.....+..- ......|+| ++++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4245555444577999998887665444321 235789999 99998677666554 2
Q ss_pred ---EEEeeCCC-CCCCCCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEeC--CeEEEEeCC-------CCcc---
Q 013873 133 ---VKLWNVPV-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHN-------RSQP--- 195 (434)
Q Consensus 133 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~-------~~~~--- 195 (434)
|.+++... +.+... ..............++++|+ +.++++.- +.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~--------~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDR--------SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp EEEEEEEECCTTSCCSTT--------SCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CceEEEEecCCCCceeec--------ccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 55555332 111000 00011112234557788884 55555543 569999987 4443
Q ss_pred --------eee-eec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc--eEEEeeec--CceeEEEeeCCCCc
Q 013873 196 --------INS-FQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA--RKVIMRAN--EDCNCYSYDSRKLD 261 (434)
Q Consensus 196 --------~~~-~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~ 261 (434)
... +.. .......++|+|++..++++-+....|+.++....... ....+.+. ..+. . |.
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~--~-DG---- 364 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGY--R-DD---- 364 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCC--B-CC----
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcc--c-CC----
Confidence 111 111 23446789999999545666667788988776543211 01111111 1100 0 00
Q ss_pred cceeeeeCcccCeE-EEEEc-------cCCCEEEEEeCCCcEEEEeCCCCeeeeEEec------------c---------
Q 013873 262 EAKCVHMGHESAVM-DIDYS-------PTGREFVTGSYDRTIRIFQYNGGRSREIYHT------------K--------- 312 (434)
Q Consensus 262 ~~~~~~~~~~~~i~-~~~~s-------p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------~--------- 312 (434)
... ...-.... .++.. ++|.++++=.....|+.++. ++......-. +
T Consensus 365 ~~~---~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~ 440 (496)
T 3kya_A 365 VGT---EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREV 440 (496)
T ss_dssp BGG---GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred ccc---ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhh
Confidence 000 01112234 45554 46666666667888999984 4543322211 0
Q ss_pred -CCccEEEEEEcCC-CCEEEEeeCCCcEEEeecCcccccccC
Q 013873 313 -RMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 313 -~~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.-.....|+++++ +.++++=..+..|+.++++....+.-.
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 0124678999996 766666666788999998876655433
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.37 E-value=0.00099 Score=57.88 Aligned_cols=207 Identities=10% Similarity=-0.025 Sum_probs=122.2
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC----CceeEEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPV 140 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~ 140 (434)
......++|++.+..++++-..++.|..+++.+ ......+...-.....+++.+.+..| ++-..++.|.+.+++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 346789999987635666666678999999876 22222233222456789998755444 4445678899999764
Q ss_pred CCCCCCCCCCCCCCCceeEEE-ecCceEEEeeccCCC-EEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 141 ATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGD-LFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
.. ...... .......+++.|.+. ++.+.. +.|..+++............-.....+++++++
T Consensus 109 ~~-------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 109 VK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp SS-------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred Cc-------------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccC
Confidence 31 111111 224557888888554 444442 357777775433222222223457899999887
Q ss_pred CcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcE
Q 013873 216 PNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTI 295 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 295 (434)
..++++-+..+.|..+|+.... ...+.. ..........+++. .+.++++-...+.|
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg~~-~~~~~~----------------------~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNGGN-RKTILE----------------------DEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSCS-CEEEEE----------------------CTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CEEEEEECCCCeEEEEecCCCc-eEEEee----------------------cCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 6777777777899999986422 111110 00112335667774 35555566667789
Q ss_pred EEEeCCCCeeeeEE
Q 013873 296 RIFQYNGGRSREIY 309 (434)
Q Consensus 296 ~iwd~~~~~~~~~~ 309 (434)
..+|..+++....+
T Consensus 232 ~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 232 FSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEE
Confidence 99988776655444
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.34 E-value=1.9e-05 Score=76.48 Aligned_cols=243 Identities=14% Similarity=0.103 Sum_probs=124.9
Q ss_pred CeEEEEeCCCCCceEEeeeC-CCcEEEEeCCCCceeEEeeccC-CCeeEEEEcCCCCeEEEee-CC-----CcEEEeeCC
Q 013873 68 GISCMAKNPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCG-TD-----CTVKLWNVP 139 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~-~d-----g~v~iwd~~ 139 (434)
...++++..++ .+++.|+. ++.+.+||..+.+-...-..+. ..-.+++..+++++++.|| .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 34456777887 78888874 5689999988764332211111 1223456667899999988 44 568999987
Q ss_pred CCCCCCCCCCC---CCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeeeecCC---------Cce
Q 013873 140 VATLTDSDDST---DNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGT---------DTV 206 (434)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~---------~~i 206 (434)
+.......... ...............++.+.. .++..+..+ ...+..||..+........... ..-
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 76543210000 000000000000111111111 122222222 2458889988765433222111 123
Q ss_pred EEEEEcCCCCcEEEEEecCC-----------cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeE
Q 013873 207 ISVRFNPAEPNVLATTASDR-----------SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVM 275 (434)
Q Consensus 207 ~~i~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 275 (434)
.++.+...+..+++.|+.++ .|.+||..+....... . . .......-.
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--------------~---~-----~mp~~R~~~ 459 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA--------------S---N-----GLYFARTFH 459 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--------------T---T-----CCSSCCBSC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--------------c---C-----CCCCCcccC
Confidence 44555443447888887543 3555554433211100 0 0 001111123
Q ss_pred EEEEccCCCEEEEEeCC-----------CcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeC
Q 013873 276 DIDYSPTGREFVTGSYD-----------RTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 276 ~~~~sp~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~ 334 (434)
+++..|+|++++.|+.+ ..+.+||..+++......... .....+..+.|++++++.|+.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45667899999999865 468999998776433221111 122234556799999999885
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.33 E-value=0.0002 Score=61.88 Aligned_cols=213 Identities=11% Similarity=0.221 Sum_probs=124.8
Q ss_pred EEEeCCCC--CceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCC----CC---eEEEe-eC--CCcEEEeeC
Q 013873 71 CMAKNPNY--LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD----GR---ILVSC-GT--DCTVKLWNV 138 (434)
Q Consensus 71 ~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~----~~---~l~s~-~~--dg~v~iwd~ 138 (434)
++-.+|.. ..+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++. -. +++|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 44455642 245666666788999999 8888888763 56777777663 22 22333 33 578888976
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCC-cceeeeecCCCceEEEEE--cCCC
Q 013873 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS-QPINSFQWGTDTVISVRF--NPAE 215 (434)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~--~~~~ 215 (434)
+... ..+.. +... .++ ......+..+++ +|..
T Consensus 107 Dp~~------------~~l~~------------------------------i~~~~~pv---~t~~~~pyGlcly~~~~~ 141 (355)
T 3amr_A 107 DGKN------------GTLQS------------------------------MTDPDHPI---ATAINEVYGFTLYHSQKT 141 (355)
T ss_dssp CTTT------------CCEEE------------------------------CSCTTSCE---ECCCSSCCCEEEEECTTT
T ss_pred CCCC------------Cceee------------------------------ccccccCc---CCCCCCeeEEEEEecCCC
Confidence 4221 00000 0000 000 000133455565 6644
Q ss_pred C-cEEEEEecCCcEEEEEccCCC---cceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 216 P-NVLATTASDRSITLYDLRMSS---PARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 216 ~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
. .++++...+|.+..|++.... ...++ +..+ .-.+.+-.|...+....|+.+-.
T Consensus 142 g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l---------------------VR~f-~lgsq~EgcvvDd~~g~Lyv~eE 199 (355)
T 3amr_A 142 GKYYAMVTGKEGEFEQYELKADKNGYISGKK---------------------VRAF-KMNSQTEGMAADDEYGRLYIAEE 199 (355)
T ss_dssp CCEEEEEECSSSEEEEEEEEECTTSCEEEEE---------------------EEEE-ECSSCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEEECCCCeEEEEEEEeCCCCcccceE---------------------EEEe-cCCCCcceEEEcCCCCeEEEecc
Confidence 3 467778888999999985321 11111 1111 12346788999998889999999
Q ss_pred CCcEEEEeCC-----CCeeeeEEecc-CCccEEEEEE--cCCCC-EEEEee-CCCcEEEeecC-cccccccCC
Q 013873 292 DRTIRIFQYN-----GGRSREIYHTK-RMQRVFCVKF--SCDAS-YVISGS-DDTNLRLWKAK-ASEQLGVLH 353 (434)
Q Consensus 292 d~~i~iwd~~-----~~~~~~~~~~~-~~~~v~~~~~--s~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~~~ 353 (434)
+.-|..|+.+ +++.+..+... ....+..|++ .++++ ||++++ .++.+.+||.. +.+.+..|.
T Consensus 200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 8777777754 23344333222 2246888888 45666 666666 57799999997 666666663
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.32 E-value=0.00092 Score=55.49 Aligned_cols=208 Identities=8% Similarity=0.107 Sum_probs=121.1
Q ss_pred EeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE--EecCceEEEeeccCCCEEEE
Q 013873 104 QYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFAT 180 (434)
Q Consensus 104 ~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 180 (434)
.+.+-...+..++|+|++..|+ +...++.|...|.. +.. .... ......-.+++.+++.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------~~~i~l~g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------IRTIPLDFVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-------------EEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-------------EEEEecCCCCChHHeEEeCCCEEEEE
Confidence 3455556899999999766554 56778888888886 432 2222 11245677888888887676
Q ss_pred eC--CeEEEEeCCCCcc---eeeee------cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCc
Q 013873 181 AG--AQVDIWNHNRSQP---INSFQ------WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANED 249 (434)
Q Consensus 181 ~~--~~i~i~d~~~~~~---~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 249 (434)
.. +.+.++++..... +.... ..+.....++|+|.+..++ ++.......+|.+........+
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~-va~E~~p~~i~~~~g~~~~~~l------- 158 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFW-FFKEKNPIEVYKVNGLLSSNEL------- 158 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEE-EEEESSSEEEEEEESTTCSSCC-------
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEE-EEECcCCceEEEEcccccCCce-------
Confidence 54 4588887665432 12221 1234568999999884444 4555555556655421000000
Q ss_pred eeEEEeeCCCCccceeeeeCcccCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeeeEEeccC--------CccEEEE
Q 013873 250 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTKR--------MQRVFCV 320 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~~ 320 (434)
.+ .+..... ...+...+.+++++|. +.+++.......+.++|.... ....+.-.. ....-.|
T Consensus 159 -~i--~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 159 -HI--SKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp -EE--EECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEE
T ss_pred -ee--ecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCee
Confidence 00 0000000 0012235688999995 455666667778999997754 444442221 1256789
Q ss_pred EEcCCCCEEEEeeCCCcEEEeec
Q 013873 321 KFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 321 ~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
+|.++|++.++ +..+.++++.-
T Consensus 230 a~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 230 AMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EECTTCCEEEE-ETTTEEEEEEC
T ss_pred EECCCCCEEEE-cCCceEEEEEe
Confidence 99999985555 66666666544
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.001 Score=65.85 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=150.2
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee---------ccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS---------GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
....|.++...++| . |-.|+.++-|..|+..+........ .....|.++...++|. |..|+.++-|..
T Consensus 311 ~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 311 SNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp SSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred CCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 34679999999886 4 6667777779999977654322110 1235689999888776 455666667888
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeeee--cCCCceEEEEEc
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQ--WGTDTVISVRFN 212 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~ 212 (434)
|+..++...... . . .......+.++...+++.+.+... +.+..+|..+++...... .....|.++...
T Consensus 388 ~~~~~~~~~~~~-~----~----~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 458 (781)
T 3v9f_A 388 FENGKRVAIYNK-E----N----RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED 458 (781)
T ss_dssp EETTEEEEECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC
T ss_pred EECCCCeEEEcc-C----C----CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC
Confidence 987654322110 0 0 011235678888888887766654 669999887665332211 134678888888
Q ss_pred CCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 213 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
+++ . |..|+. +-|..||..+........ ... . ......|.++...++|.+.+ |+.+
T Consensus 459 ~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~-------------~~~--~-----~~~~~~i~~i~~d~~g~lWi-gt~~ 514 (781)
T 3v9f_A 459 KNK-K-IWIGTH-AGVFVIDLASKKVIHHYD-------------TSN--S-----QLLENFVRSIAQDSEGRFWI-GTFG 514 (781)
T ss_dssp TTS-E-EEEEET-TEEEEEESSSSSCCEEEC-------------TTT--S-----SCSCSCEEEEEECTTCCEEE-EESS
T ss_pred CCC-C-EEEEEC-CceEEEeCCCCeEEeccc-------------Ccc--c-----ccccceeEEEEEcCCCCEEE-EEcC
Confidence 766 4 444555 558888876654322110 000 0 01135789999998887655 4443
Q ss_pred CcEEEEeCCCCeeeeEEec--cCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 293 RTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 293 ~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
+-|..||..+++....... .....|.++...++|.+.++. .+|.|..||..+++
T Consensus 515 ~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 515 GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 4478899877654332211 113568999999999866544 46655888876553
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0015 Score=64.73 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=146.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee--------------ccCCCeeEEEEcCCCCeEEEeeCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--------------GHQGAVRGLTVSTDGRILVSCGTDC 131 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~i~~~~~~~~l~s~~~dg 131 (434)
...|.++...++| . |..|+..+-|.++|..++....... .....|.++...++|. |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 4569999988886 4 5566665668899987665322111 1345799999988876 55567677
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEe-CCeEEEEeCCCCcceeee---ecCCCceE
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSF---QWGTDTVI 207 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~---~~~~~~i~ 207 (434)
-|..++............... .. ........+.++...++|.+.+.. ++.+..||..++...... ......|.
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~-~~--~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQ-MN--ESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp CEEEECSSCCSCEEEC----C-CC--SSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred eEEEeCCCCCcceeeccCccc-cc--cCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 788888765543211100000 00 000013457788888888766655 566899987654322111 12346788
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEE
Q 013873 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 208 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
++...+++ . |..|+.++-|..+|..+..... + ... ......|.++...++|.+.+
T Consensus 411 ~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~-~-------------~~~---------~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 411 CSLKDSEG-N-LWFGTYLGNISYYNTRLKKFQI-I-------------ELE---------KNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEEECTTS-C-EEEEETTEEEEEECSSSCEEEE-C-------------CST---------TTCCCCEEEEEECTTSEEEE
T ss_pred EEEECCCC-C-EEEEeccCCEEEEcCCCCcEEE-e-------------ccC---------CCCCCeEEEEEECCCCCEEE
Confidence 88888766 4 4457766678888875442111 0 000 01345788998888876544
Q ss_pred EEeCCCcEEEEeCCCCeeeeEEecc----CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 288 TGSYDRTIRIFQYNGGRSREIYHTK----RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
|+. +-|..||..+++........ ....|.++...++|.+.+ |+.++-|..|+..+++
T Consensus 466 -gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp -EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred -EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 454 45889998876543332211 125789999999998665 4444447778876543
No 281
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.23 E-value=0.0008 Score=63.72 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=88.9
Q ss_pred EEeeeCCCcEEEEeCCCCceeEEeeccC----CCeeE-EEEcCCCCeEEEee------CCCcEEEeeCCCCCCCCCCCCC
Q 013873 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQ----GAVRG-LTVSTDGRILVSCG------TDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 82 l~sg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-i~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
|+.++.|+.|..+|..+|+.+....... ..+.+ ..+ .++ .+++++ .+|.|..+|..+++..-.....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999887764322 01211 111 134 455554 3899999999988765332221
Q ss_pred CCCC-----------Cc---------------eeEEEecCceEEEeeccCCCEEEEeC------------------CeEE
Q 013873 151 DNSS-----------EP---------------LAVYVWKNSFWAVDHQWEGDLFATAG------------------AQVD 186 (434)
Q Consensus 151 ~~~~-----------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~i~ 186 (434)
.... .+ .............++.+...++..+. +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 1000 00 00000000011233344444444332 2689
Q ss_pred EEeCCCCcceeeeecCCC----------ceEEEEEc-CCCC--cEEEEEecCCcEEEEEccCCCcceE
Q 013873 187 IWNHNRSQPINSFQWGTD----------TVISVRFN-PAEP--NVLATTASDRSITLYDLRMSSPARK 241 (434)
Q Consensus 187 i~d~~~~~~~~~~~~~~~----------~i~~i~~~-~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 241 (434)
.+|..+++.+..++.... ++. +... .++. ..++.++.+|.+.++|..+++.+..
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 999999998877765322 111 2221 3342 4677788999999999887765543
No 282
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.19 E-value=0.0025 Score=56.19 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=122.8
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce--eEEee---ccCCCeeEEEEcCC---CCeEEEeeC-C-----C
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYS---GHQGAVRGLTVSTD---GRILVSCGT-D-----C 131 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~i~~~~~---~~~l~s~~~-d-----g 131 (434)
-..-..++|.|+| .++ .+..+|.|++++ +++. +..+. ........|+|+|+ +..|+.+.. + +
T Consensus 30 l~~P~~ia~~pdG-~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDG-GML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTS-CEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCC-eEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4467799999998 644 445669999998 3432 11111 12356789999998 555555443 2 5
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeE-EEe----cCceEEEeeccCCCEEEEeC---------------CeEEEEeCC
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAV-YVW----KNSFWAVDHQWEGDLFATAG---------------AQVDIWNHN 191 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d~~ 191 (434)
.|..|+.....+.. ...+.. ... ......+++.|+|.++++.+ +.|.-++..
T Consensus 106 ~v~r~~~~~~~~~~--------~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d 177 (352)
T 2ism_A 106 QVVRLRHLGERGVL--------DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPE 177 (352)
T ss_dssp EEEEEEECSSCEEE--------EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred EEEEEEeCCCCcCc--------eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence 67777775331100 001100 110 01235788999998877753 345555554
Q ss_pred CC------------cceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEE------EEEccCCCcceEEEeeecCceeEE
Q 013873 192 RS------------QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT------LYDLRMSSPARKVIMRANEDCNCY 253 (434)
Q Consensus 192 ~~------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~------iwd~~~~~~~~~~~~~~~~~~~~~ 253 (434)
.. .....+...-.....++|+|+...++++-.....+. +.-+..+. -|
T Consensus 178 G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~--------------ny 243 (352)
T 2ism_A 178 GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG--------------NY 243 (352)
T ss_dssp SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC--------------BC
T ss_pred CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC--------------cC
Confidence 31 011111111234567888884435555433332211 11111111 00
Q ss_pred EeeC-------CCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee------eeEEeccCCccEEEE
Q 013873 254 SYDS-------RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS------REIYHTKRMQRVFCV 320 (434)
Q Consensus 254 ~~~~-------~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~ 320 (434)
-|.. .....+...+ .+......++| .+|.++++.-..+.|...++..... ...+.. ....+..+
T Consensus 244 Gwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v 320 (352)
T 2ism_A 244 GWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGRLREV 320 (352)
T ss_dssp CTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCCEEEE
T ss_pred CCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCCeeEE
Confidence 0000 0011122222 22335667887 5677766666667788877764321 112222 23578999
Q ss_pred EEcCCCCEEEEee
Q 013873 321 KFSCDASYVISGS 333 (434)
Q Consensus 321 ~~s~~~~~l~s~~ 333 (434)
++.|||.+.++..
T Consensus 321 ~~~pdG~lyv~~~ 333 (352)
T 2ism_A 321 QVGPDGALYVTTS 333 (352)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998776654
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.18 E-value=0.003 Score=61.78 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=130.7
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEE-EeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecCc
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNS 165 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (434)
...|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++...... ........ ....
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQA 472 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSC
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---------cceeEEEecCCCC
Confidence 3568888887665544444 445678899998555554 4445678888888643110 01111111 2234
Q ss_pred eEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC-CcEEEEEccCCCcceE
Q 013873 166 FWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARK 241 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~ 241 (434)
...+++.+.+..|+..+ +.|.+.++........+...-.....|++.|.++.++++-... +.|...++...... .
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-E
Confidence 56788887765444433 4699999876554443433445678999999765666654333 66777776533211 1
Q ss_pred EEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEecc-CCccEEE
Q 013873 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTK-RMQRVFC 319 (434)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~ 319 (434)
+ ....-...+.|++++.+..|+.+. ..+.|..+++............ ......+
T Consensus 552 l------------------------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~g 607 (791)
T 3m0c_C 552 L------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 607 (791)
T ss_dssp E------------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred E------------------------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCE
Confidence 1 112234678899998766666654 4567999999765544444321 1234556
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
|++..+ .++++-...+.|...+..+++.+..
T Consensus 608 lav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 608 LAVFED-KVFWTDIINEAIFSANRLTGSDVNL 638 (791)
T ss_dssp EEEETT-EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEeCC-EEEEEECCCCEEEEEeCCCCcceEE
Confidence 776433 3333444567777777666654433
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.17 E-value=0.0027 Score=55.08 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=122.4
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee-EEeeccCCCeeEEEEcCCCCeE-EEeeCCCcEEEeeCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~ 144 (434)
....+++|++....++.+-...+.|..+++..+... ..+...-.....+++.+.+..| ++-...+.|.+++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~- 113 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR- 113 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-
Confidence 356788999865366666667788999998766321 2222223456788898744444 4445567899999864321
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccC-CCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.............+++.|. +.++.+.. +.|..+++............-.....++++|++..+++
T Consensus 114 -----------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 114 -----------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp -----------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred -----------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEE
Confidence 0111112234567888875 44555542 35888887643322222222345689999997767777
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
+-+..+.|..+|+..... ..+. .+.......+++. .+.++.+-...+.|..+|.
T Consensus 183 aD~~~~~I~~~d~dG~~~-~~~~------------------------~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 183 ADAKLNFIHKSNLDGTNR-QAVV------------------------KGSLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EETTTTEEEEEETTSCSC-EEEE------------------------CSCCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEcCCCCce-EEEe------------------------cCCCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 777778899998864221 1111 1122345667774 3345555556778999998
Q ss_pred CCCeeeeEE
Q 013873 301 NGGRSREIY 309 (434)
Q Consensus 301 ~~~~~~~~~ 309 (434)
.+++....+
T Consensus 237 ~~G~~~~~i 245 (318)
T 3sov_A 237 YTGEGLREI 245 (318)
T ss_dssp TTCCSCEEE
T ss_pred CCCCceEEE
Confidence 777655444
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.16 E-value=0.00039 Score=65.87 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEE
Q 013873 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 330 (434)
Q Consensus 282 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 330 (434)
.+.+++.++.|+.++.||.++++.+..+.........-+.|..+|+..+
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 4678888999999999999999998887655322122366667887433
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.14 E-value=3.3e-05 Score=74.86 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=127.6
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee-CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCce
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (434)
.+.|+..++.+......+.. ...+..++|.+.+..|+.+. ..+.|+.+++........ ............
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--------~~~~i~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------YDTVISRDIQAP 455 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--------CCCBCCSCC--C
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--------eEEEEeCCCCCc
Confidence 35788888877665444432 34567899998766666554 457899998875210000 000000001122
Q ss_pred EEEeeccCC-CEEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecC-CcEEEEEccCCCcceEE
Q 013873 167 WAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKV 242 (434)
Q Consensus 167 ~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 242 (434)
..+++.+.+ .++++.. +.|.++++........+.........+++.|.+..++++-... +.|..+++...... .+
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE
Confidence 346666543 4444432 5699998876544333333234457788888765555554333 56666665432111 00
Q ss_pred EeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeeeeEEec-cCCccEEEE
Q 013873 243 IMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT-GSYDRTIRIFQYNGGRSREIYHT-KRMQRVFCV 320 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~ 320 (434)
....-...+.|+|+|++..|+. -+..+.|..+|+........+.. ........|
T Consensus 535 ------------------------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gl 590 (699)
T 1n7d_A 535 ------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 590 (699)
T ss_dssp ------------------------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCC
T ss_pred ------------------------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEe
Confidence 0111234567999997655544 44567899999975443333321 111234456
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecCcccccccCC
Q 013873 321 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353 (434)
Q Consensus 321 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 353 (434)
++..+ .++++....+.|..++..+++.+..+.
T Consensus 591 avd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 591 AVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 66544 445555567899999988888776664
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.00068 Score=66.59 Aligned_cols=195 Identities=9% Similarity=0.036 Sum_probs=104.6
Q ss_pred CeeEEEEc-CCCCeEEEeeC-CC----cEEEeeCCCC-CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-
Q 013873 111 AVRGLTVS-TDGRILVSCGT-DC----TVKLWNVPVA-TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (434)
Q Consensus 111 ~v~~i~~~-~~~~~l~s~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (434)
.+...+|+ |||++|+.+.. +| .|+++|+.++ .... ..+ ......+.|+||+..|+...
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---------~~~-----~~~~~~~~WspDg~~l~y~~~ 240 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---------DKV-----SGTNGEIVWGPDHTSLFYVTK 240 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---------CCE-----EEECSCCEECSSTTEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---------ccc-----cCceeeEEEecCCCEEEEEEE
Confidence 57789999 99998875433 23 4999999887 4210 111 11134678999997665442
Q ss_pred ------CeEEEEeCCCCcce--eeeec-CCCceEEEEEcCCCCcEEEEEec--CCcEEEEEccCCCcceEEEeeecCcee
Q 013873 183 ------AQVDIWNHNRSQPI--NSFQW-GTDTVISVRFNPAEPNVLATTAS--DRSITLYDLRMSSPARKVIMRANEDCN 251 (434)
Q Consensus 183 ------~~i~i~d~~~~~~~--~~~~~-~~~~i~~i~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~ 251 (434)
..|.++++.++... ..+.. .......+.|+|++..++++... ...|.++|+.+......+
T Consensus 241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~--------- 311 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTL--------- 311 (751)
T ss_dssp CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCE---------
T ss_pred CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCcee---------
Confidence 14888888776432 23322 23456788999999555554433 234666666543211100
Q ss_pred EEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCC-eeee-EEeccCCccEEEEEEcCC
Q 013873 252 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD----RTIRIFQYNGG-RSRE-IYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~s~~ 325 (434)
..+.........++.|+..+.+++....+ ..|..+|+.++ .... .+.......+..+.+. .
T Consensus 312 ------------~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~ 378 (751)
T 2xe4_A 312 ------------EIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-S 378 (751)
T ss_dssp ------------EESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-S
T ss_pred ------------EEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-C
Confidence 01111233445555554433344444433 35777787652 3222 2222222245566665 3
Q ss_pred CCEEEEeeCCCcEEEe
Q 013873 326 ASYVISGSDDTNLRLW 341 (434)
Q Consensus 326 ~~~l~s~~~dg~v~vw 341 (434)
+.++++...+|..++|
T Consensus 379 ~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIW 394 (751)
T ss_dssp SEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCEEEEE
Confidence 3455566677765444
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.09 E-value=0.005 Score=60.30 Aligned_cols=160 Identities=10% Similarity=-0.087 Sum_probs=99.4
Q ss_pred CCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC----ceeEEeeccCCCeeEEEEcCCCCeEEE-eeCCCcEEEeeCC
Q 013873 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCTVKLWNVP 139 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg~v~iwd~~ 139 (434)
....+..|+|++....++++-...+.|+.+++... .....+...-.....|++.+.+..|+. -...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567889999865355666666788999998753 223333333456678999886655554 4557889999986
Q ss_pred CCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCC
Q 013873 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 215 (434)
... ..............+++.|.+ .++.+.. +.|...++........+...-.....|++.+.+
T Consensus 502 G~~------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 502 GVK------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SSS------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred CCe------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCC
Confidence 431 111111122346788998864 4555542 358888886554444343334567899999877
Q ss_pred CcEEEEEecCCcEEEEEccCC
Q 013873 216 PNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 216 ~~~l~~~~~dg~i~iwd~~~~ 236 (434)
..++++-...+.|..+++...
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSC
T ss_pred CeEEEEeCCCCcEEEEecCCC
Confidence 666666666678888887543
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.05 E-value=0.001 Score=60.47 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=114.0
Q ss_pred CeeEEEEcCC--CCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC-----
Q 013873 111 AVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA----- 183 (434)
Q Consensus 111 ~v~~i~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (434)
....++|+|+ +..|+.+...+.|+.+|..++... ...........+++++++.++++..+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-------------~~~~~~~~P~giavd~dG~lyVad~~~~~~~ 206 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-------------IKTTNIGQCADVNFTLNGDMVVVDDQSSDTN 206 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-------------EECCCCSCEEEEEECTTCCEEEEECCSCTTS
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-------------EeecCCCCccEEEECCCCCEEEEcCCCCccc
Confidence 3568999984 445555555488999998655332 11113345678999999997766542
Q ss_pred e-EEEEeCCCCcc-eeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 184 Q-VDIWNHNRSQP-INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 184 ~-i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
. +..++...+.. ...+. .-.....++++|.+..++++-..++.|+.+|..++.....+..
T Consensus 207 ~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~----------------- 268 (433)
T 4hw6_A 207 TGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM----------------- 268 (433)
T ss_dssp EEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-----------------
T ss_pred ceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-----------------
Confidence 2 33333322111 01111 1234566888984446776666778888888765433121110
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCC--Ceee--eEEecc--------------CCccEEEEEE
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNG--GRSR--EIYHTK--------------RMQRVFCVKF 322 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~--~~~~--~~~~~~--------------~~~~v~~~~~ 322 (434)
.+.......++|+|+|++|+.+ ...+.|+.+++.. +... ..+... .......+++
T Consensus 269 ------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 269 ------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp ------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred ------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 0111223469999999955554 4567899988652 3211 111110 1123667999
Q ss_pred ---------cCCCCEEEEeeCCCcEEEeec
Q 013873 323 ---------SCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 323 ---------s~~~~~l~s~~~dg~v~vw~~ 343 (434)
.++|.+.++-...+.|+.++.
T Consensus 343 ~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 343 VKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred EccccccccCCCCcEEEEECCCCEEEEECC
Confidence 777777777667788988885
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.00 E-value=0.011 Score=56.42 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=132.2
Q ss_pred CCCcEEEEeCCCCceeEEee-ccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ec
Q 013873 87 MDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WK 163 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (434)
..+.|+..++.+......+. ..-..+..++|++.+..|+.+ ..++.|..++++.... ..... ..
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-------------~~v~~~g~ 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-------------EHVVEFGL 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEECSSC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-------------EEEEeCCC
Confidence 45689999998765443332 123467899999866665544 4578898888764321 11111 11
Q ss_pred CceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEE-ecCCcEEEEEccCCCcc
Q 013873 164 NSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT-ASDRSITLYDLRMSSPA 239 (434)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 239 (434)
.....+++.+.+. ++.+.. +.|.+.++........+...-.....+++.|..+.++++- +..+.|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 2345677776554 444433 4588888875543322323345578999998664565554 22456666666443211
Q ss_pred eEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeeeEEeccCCccEE
Q 013873 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVF 318 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 318 (434)
.+ ...-...+.|+++++++.|+.+. ..+.|..+|+..... ..+... .....
T Consensus 160 -~l-------------------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~~P~ 211 (628)
T 4a0p_A 160 -TL-------------------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LPHPF 211 (628)
T ss_dssp -EE-------------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CSCEE
T ss_pred -EE-------------------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CCCce
Confidence 11 12234678899999777666554 467899999976544 333222 24456
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 319 CVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 319 ~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
++++.. +.++++-...+.|...|..+++...
T Consensus 212 glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 212 GLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp EEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 788765 4444444457888888877766443
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.95 E-value=0.0066 Score=51.97 Aligned_cols=210 Identities=9% Similarity=0.067 Sum_probs=120.1
Q ss_pred ccCCCeeEEEEcCCCCeEEEee-CCCcEEEeeCCCCCCCCCCCCCCCC--CCceeEEEecCceEEEee---ccCCCEEEE
Q 013873 107 GHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNS--SEPLAVYVWKNSFWAVDH---QWEGDLFAT 180 (434)
Q Consensus 107 ~h~~~v~~i~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 180 (434)
.....-.++.|++....|..++ ..|+|..|+...+..... ...... ... ......+.+ .+++.++++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~------~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDG------EQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCC------SEEEEEEEESSSSSCCEEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCC------cceeeEEEEeccCCCCcEEEE
Confidence 3334455789988555666555 789999999875532211 110000 000 012357777 577777774
Q ss_pred eC---------------CeEEEEeCC---CCcceeeeec-------------CCCceEEEEEcCCCCcEEEEEecC-CcE
Q 013873 181 AG---------------AQVDIWNHN---RSQPINSFQW-------------GTDTVISVRFNPAEPNVLATTASD-RSI 228 (434)
Q Consensus 181 ~~---------------~~i~i~d~~---~~~~~~~~~~-------------~~~~i~~i~~~~~~~~~l~~~~~d-g~i 228 (434)
.+ ..+..||+. +++.+..... .......++..++| +..++++.. +.|
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I 161 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAI 161 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeE
Confidence 32 348899998 7776654432 11247899999988 777788877 776
Q ss_pred EEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeE
Q 013873 229 TLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI 308 (434)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 308 (434)
..++..... ...+ ..... ........+.|+++|+|+.|++...+|.+..+|+........
T Consensus 162 ~rV~pdG~~-~~~~-------------~~~~~------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v 221 (334)
T 2p9w_A 162 ARVSADGKT-VSTF-------------AWESG------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPE 221 (334)
T ss_dssp EEECTTSCC-EEEE-------------EECCC------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCE
T ss_pred EEEeCCCCE-Eeee-------------eecCC------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceee
Confidence 666654331 1111 10000 011223467899999999988887799999999884322001
Q ss_pred Ee---cc--CCccEEEE-EEcCCCCE-EEEeeCCCcEEEeecC
Q 013873 309 YH---TK--RMQRVFCV-KFSCDASY-VISGSDDTNLRLWKAK 344 (434)
Q Consensus 309 ~~---~~--~~~~v~~~-~~s~~~~~-l~s~~~dg~v~vw~~~ 344 (434)
-. .. .......+ ..-.+|+. |++.+..+.+.+.+.+
T Consensus 222 ~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 222 PVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp ECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred cccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence 11 10 11223343 33347777 4444455555555443
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.91 E-value=6.1e-05 Score=73.04 Aligned_cols=208 Identities=10% Similarity=-0.040 Sum_probs=114.5
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC----CceeEEeeccCCCeeEEEEcCCC-CeEEEeeCCCcEEEeeCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~v~iwd~~~~ 141 (434)
..+..++|++.+..++++-...+.|+.+++.+ ......+...-.....|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45668899987634455555668899999875 22222222112234567887544 44444455688999987644
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCC-CEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
....... ........+++.|.+ .++++.. +.|..+++........+...-.....|+|+|++..
T Consensus 486 ~~~~l~~------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 486 KRKTLFR------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 553 (699)
T ss_dssp CEEEECC------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCC
T ss_pred ceEEEEe------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCE
Confidence 2111100 011233567788754 4444432 34777666543222222222234568999998767
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
++++-+..+.|..+++.... ...+. . ..........|++..+ .++++....+.|..
T Consensus 554 LY~aD~~~~~I~~~d~dG~~-~~~~~-~---------------------~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNGGN-RKTIL-E---------------------DEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp EEEEETTTTEEEEECSSSSC-CEEEC-C---------------------CSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred EEEEecCCCeEEEEccCCCc-eEEEE-e---------------------cCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 77777777889999886421 11110 0 0011122334555443 44555556788999
Q ss_pred EeCCCCeeeeEEe
Q 013873 298 FQYNGGRSREIYH 310 (434)
Q Consensus 298 wd~~~~~~~~~~~ 310 (434)
+|..+++....+.
T Consensus 610 ~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 610 ANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTEEEEECCC
T ss_pred EEccCCCceEEee
Confidence 9988877666553
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.91 E-value=0.0079 Score=51.10 Aligned_cols=242 Identities=8% Similarity=0.097 Sum_probs=150.6
Q ss_pred EEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCC
Q 013873 72 MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (434)
.-.+|.. ..+|.=. ..++.|+|+++.+.+..+.- ...|.-=.|..+. .|+-.+ +..|.-|++...
T Consensus 72 AIMnP~~-~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~---------- 136 (365)
T 2xzh_A 72 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE---------- 136 (365)
T ss_dssp EEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTT----------
T ss_pred eeeCCCc-cEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCC----------
Confidence 3457775 6666544 67899999999998888774 4577777777554 444444 358999998653
Q ss_pred CCCCceeEEEe-----cCceEEEeeccCCCEEEEeC---------CeEEEEeCCCCcceeeeecCCCceEEEEEcC--CC
Q 013873 152 NSSEPLAVYVW-----KNSFWAVDHQWEGDLFATAG---------AQVDIWNHNRSQPINSFQWGTDTVISVRFNP--AE 215 (434)
Q Consensus 152 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--~~ 215 (434)
..+...+.. ...+.....+++.++++..| |.+.+|..+.+. -+.+.+|......+.+.. ..
T Consensus 137 --s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 137 --SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEE 213 (365)
T ss_dssp --CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSC
T ss_pred --CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCC
Confidence 244444443 23566667778888766543 458899886643 345566654443333321 11
Q ss_pred CcEEEEEec---CCcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeee---CcccCeEEEEEccCCCEEEE
Q 013873 216 PNVLATTAS---DRSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHM---GHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 216 ~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~ 288 (434)
..+|+.+.. .+.+++.++.... ....+. .+...++. ....-.-++..|+.-..++.
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-----------------kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----------------KKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----------------CEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----------------cccceeeCCccccCCceEEEEecccCCEEEE
Confidence 134444333 2578888874431 111100 00011111 12344567888888888999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
-+.-|.|++||+.++.++..-.... ..|...+-+.+..-++.-...|.|.--.++....+
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~-d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EeCCcEEEEEEcccCcEEEEeccCC-CceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 9999999999999999887765554 56666666555555666678888888777776654
No 294
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.90 E-value=0.0073 Score=52.85 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=111.7
Q ss_pred CeEEEEeCCCCCceEEee------------eCCCcEEEEeCCCC--ce-eEEeec-----cCCCeeEEEEcC--CCC-eE
Q 013873 68 GISCMAKNPNYLKGFFSG------------SMDGDIRLWDIANR--RT-VCQYSG-----HQGAVRGLTVST--DGR-IL 124 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg------------~~dg~i~iwd~~~~--~~-~~~~~~-----h~~~v~~i~~~~--~~~-~l 124 (434)
..-.+...|+| ..++++ ..+|.|.++|..+. +. ...+.+ .......|.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45566678876 444443 16899999998742 21 112222 223566777765 343 44
Q ss_pred EEee-C--CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe--cCceEEEeeccCCCEEEEeC-----------------
Q 013873 125 VSCG-T--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW--KNSFWAVDHQWEGDLFATAG----------------- 182 (434)
Q Consensus 125 ~s~~-~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------- 182 (434)
+++. . +.+|.+|+++..... ......... -.....+.+.++|.++++.+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~---------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS---------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE---------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCeEEEEEEECCCCE---------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 4442 2 467888887644210 011111111 23567888889998777653
Q ss_pred --CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 183 --AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 183 --~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
+.+..+|. ++ +..+...-...+.++|+|++..++++-+..+.|..|++.........
T Consensus 201 ~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~------------------ 259 (355)
T 3sre_A 201 AWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL------------------ 259 (355)
T ss_dssp CCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE------------------
T ss_pred CccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC------------------
Confidence 23555554 32 22232333457899999999667777777889999998643211111
Q ss_pred ccceeeeeCcccCeEEEEEcc-CCCEEEEEeCC-CcEEEEeCC
Q 013873 261 DEAKCVHMGHESAVMDIDYSP-TGREFVTGSYD-RTIRIFQYN 301 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d-~~i~iwd~~ 301 (434)
..+ ...+..-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 260 ----~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 260 ----RVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ----EEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ----EEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 011 1134567889999 59887777644 344445543
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.89 E-value=0.01 Score=51.75 Aligned_cols=237 Identities=8% Similarity=0.037 Sum_probs=120.3
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee----ccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS----GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (434)
...+.++.|.+.+ ..+++ +.+|.|. ...+.++.-.... .....+.+|.|.+ +. ++.++.+|.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~~-~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRH-HGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSS-CEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCC-cEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 4579999998775 55664 4567653 3334343222211 1244688899976 34 444566675543 22222
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEEeCCCCcceeee-ecCCCceEEEEEcCCCCcEE
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSF-QWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l 219 (434)
+.=........ ....+..+.+.+++.+++.+. +.+. ...+.++.-... ......+..+.+.+++ .++
T Consensus 109 ~tW~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~g~v~-~S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~ 177 (327)
T 2xbg_A 109 QSWSQIPLDPK---------LPGSPRLIKALGNGSAEMITNVGAIY-RTKDSGKNWQALVQEAIGVMRNLNRSPSG-EYV 177 (327)
T ss_dssp SSCEECCCCTT---------CSSCEEEEEEEETTEEEEEETTCCEE-EESSTTSSEEEEECSCCCCEEEEEECTTS-CEE
T ss_pred CCceECccccC---------CCCCeEEEEEECCCCEEEEeCCccEE-EEcCCCCCCEEeecCCCcceEEEEEcCCC-cEE
Confidence 21000000000 011234455555666666554 3332 222333322222 2234568889999876 566
Q ss_pred EEEecCCcEEE-EEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEE
Q 013873 220 ATTASDRSITL-YDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298 (434)
Q Consensus 220 ~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 298 (434)
+++ .+|.+.. .|-. +..-..+ .......+..+++.+++..++ ++.+|.+++.
T Consensus 178 ~~g-~~G~~~~S~d~g-G~tW~~~------------------------~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s 230 (327)
T 2xbg_A 178 AVS-SRGSFYSTWEPG-QTAWEPH------------------------NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFS 230 (327)
T ss_dssp EEE-TTSSEEEEECTT-CSSCEEE------------------------ECCSSSCEEEEEECTTSCEEE-EETTTEEEEE
T ss_pred EEE-CCCcEEEEeCCC-CCceeEC------------------------CCCCCCccceeEECCCCCEEE-EeCCceEEEe
Confidence 555 4454433 2210 1111111 113445688899999887654 4557888776
Q ss_pred eCCCCeeeeEEecc---CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccc
Q 013873 299 QYNGGRSREIYHTK---RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348 (434)
Q Consensus 299 d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 348 (434)
+.+.++.-...... ....+.++++.+++.+++++. +|.| ++..+.++.
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT 281 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc
Confidence 53334332222211 123588999998888777654 6766 344444443
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.0013 Score=59.91 Aligned_cols=153 Identities=7% Similarity=0.092 Sum_probs=93.1
Q ss_pred eEEEeecc--CCCEEEEeC-CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC----cEEEEEccCCCc
Q 013873 166 FWAVDHQW--EGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR----SITLYDLRMSSP 238 (434)
Q Consensus 166 ~~~~~~~~--~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 238 (434)
...++++| ++.++++.. +.|..+|+..+...... ........++|++++..++++...++ .+..++.. ...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 35677886 355555544 56888998776544333 34556789999999844665554333 23333322 211
Q ss_pred ceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccE
Q 013873 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 317 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 317 (434)
.... .+. ......+++++| +|.++++-..++.|..|+...+..............
T Consensus 217 ~~~~-----------------------~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 217 KVIT-----------------------ELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp CSEE-----------------------EEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred eeee-----------------------eec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence 1000 000 122356788999 677666666788999999987765333333222456
Q ss_pred EEEEEcCCCCEEEEe-eCCCcEEEeecC
Q 013873 318 FCVKFSCDASYVISG-SDDTNLRLWKAK 344 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~-~~dg~v~vw~~~ 344 (434)
..++|+|+|++|+.+ ...+.|..++..
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 789999999955544 467789888765
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.85 E-value=0.022 Score=54.33 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=120.9
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEe-eCCCcEEEeeCCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~ 145 (434)
.....++|++.+..++.+-..++.|..+++........+.........+++.+.+..|+.+ ...+.|.+.+++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-- 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-- 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence 4678999999764556666678899999987654443343223457788888765555444 4567888888864321
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
.............+++.| .|.++.+.- +.|...++........+. .-.....+++++.+..++++
T Consensus 115 ----------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 115 ----------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp ----------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEE
T ss_pred ----------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEE
Confidence 011101223457888887 455555542 357777776554333332 34567899999987677777
Q ss_pred EecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 013873 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 222 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
-...+.|..+|+..... .+.. .......++++.. +..+++-...+.|...|..
T Consensus 184 D~~~~~I~~~d~dG~~~--~v~~------------------------~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 184 DLDTNLIESSNMLGLNR--EVIA------------------------DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp ETTTTEEEEEETTSCSC--EEEE------------------------ECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred ECCCCEEEEEcCCCCce--EEee------------------------ccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 77778899998865432 1110 1122344666654 3344444446778777766
Q ss_pred CCee
Q 013873 302 GGRS 305 (434)
Q Consensus 302 ~~~~ 305 (434)
+++.
T Consensus 237 tg~~ 240 (628)
T 4a0p_A 237 SGQN 240 (628)
T ss_dssp TCCS
T ss_pred CCCc
Confidence 5543
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.83 E-value=0.013 Score=55.87 Aligned_cols=226 Identities=13% Similarity=0.062 Sum_probs=124.2
Q ss_pred CCcEEEEeCCCCce-eEEeeccCCCeeEEEEcCCCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-ecC
Q 013873 88 DGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKN 164 (434)
Q Consensus 88 dg~i~iwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (434)
...|+..++..... ...+...-.....++|++.+..|+.+.. .+.|..++++.... ...... ...
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------------~~~v~~~~~~ 84 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------VQNVVVSGLL 84 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCS
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------------eEEEEeCCCC
Confidence 46789999876531 2222223445778999986666665544 57788888764310 111111 123
Q ss_pred ceEEEeeccCCC-EEEEeC--CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEec-CCcEEEEEccCCCcce
Q 013873 165 SFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPAR 240 (434)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~ 240 (434)
....+++.+.+. ++.+.. +.|.+.++........+...-.....|++.|.++.++++-.. .+.|...++..... .
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~ 163 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F 163 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-E
Confidence 567888888555 444433 469999987654333332334456788998876556655422 34555555542211 1
Q ss_pred EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeeeEEeccCCccEEE
Q 013873 241 KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYHTKRMQRVFC 319 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 319 (434)
.+ ....-...+.|++++++..|+.+ ...+.|..+|+............ .....+
T Consensus 164 ~l------------------------~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~g 218 (619)
T 3s94_A 164 II------------------------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFA 218 (619)
T ss_dssp EE------------------------ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCC
T ss_pred EE------------------------EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceE
Confidence 11 11223457889999976665555 45678999998765443333211 123456
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 320 VKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 320 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
+++..+ .++++-...+.|...|..+++....+
T Consensus 219 i~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 219 LTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 777655 34444446788999998887655443
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.79 E-value=0.0037 Score=53.54 Aligned_cols=164 Identities=12% Similarity=0.177 Sum_probs=101.1
Q ss_pred EEeeccCCCEEEEeC---CeEEEEeCCCCcceee-eec----C--CCceEEEEE---cCCCCcEEEEEec----------
Q 013873 168 AVDHQWEGDLFATAG---AQVDIWNHNRSQPINS-FQW----G--TDTVISVRF---NPAEPNVLATTAS---------- 224 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~-~~~----~--~~~i~~i~~---~~~~~~~l~~~~~---------- 224 (434)
+..|++....+..++ +.|..||...+..... +.. . ...+..+.| .|++ .++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccccccc
Confidence 456766444444443 7899999875543322 221 1 114678999 5875 67765432
Q ss_pred ---CCcEEEEEcc---CCCcceEEEeeecCceeEEEeeCCCCccceeeeeC-cccCeEEEEEccCCCEEEEEeCC-CcEE
Q 013873 225 ---DRSITLYDLR---MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYD-RTIR 296 (434)
Q Consensus 225 ---dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d-~~i~ 296 (434)
+..|..||+. +++......+....+ ......+ -......++..++|+..++++.- +.|.
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-------------~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQD-------------EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHH-------------HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccc-------------cccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 5678888988 565554432110000 0000000 12357899999999999999988 8888
Q ss_pred EEeCCCCeeeeEEecc----CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 297 IFQYNGGRSREIYHTK----RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 297 iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
..+.........+... .....+.++++|+|..|++...+|.|..+|+..
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 8887654332222111 122367999999999888887799999999873
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.75 E-value=0.018 Score=50.20 Aligned_cols=231 Identities=10% Similarity=0.068 Sum_probs=122.5
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEee---ccCCCeeEEEEcCCCCeEEEeeCCCcEE-EeeCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDCTVK-LWNVPVA 141 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~dg~v~-iwd~~~~ 141 (434)
...+.++.|++ + ..++. +.+|.|.. ..+.++.-..+. .+.+.+..+.+.+++..++++ .+|.|. -.| .+
T Consensus 79 ~~~~~~i~~~~-~-~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SG 151 (327)
T ss_dssp CCEEEEEEEET-T-EEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TT
T ss_pred CccEEEEEecC-C-eEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CC
Confidence 44688999986 3 54554 45665544 223343322222 234567788887776655554 456542 222 11
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-CeEEEE-eC--CCCcceeeeecCCCceEEEEEcCCCCc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIW-NH--NRSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~-d~--~~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
.. -..........+..+.+.+++.+++.+. +.+..- |- .+.+.+. ......+..+.+.+++ .
T Consensus 152 ~t-----------W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g-~ 217 (327)
T 2xbg_A 152 KN-----------WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG-R 217 (327)
T ss_dssp SS-----------EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS-C
T ss_pred CC-----------CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC-C
Confidence 10 0000001123567788888888887764 444333 32 2222221 1234568888998877 4
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
++ .++.+|.+.+.+...+.. |....... ..+...+.++++.+++..++++. +|.| +
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~t----------------W~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~ 273 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSEN----------------WGELLSPL-----RRNSVGFLDLAYRTPNEVWLAGG-AGAL-L 273 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEE----------------ECCCBCTT-----SSCCSCEEEEEESSSSCEEEEES-TTCE-E
T ss_pred EE-EEeCCceEEEecCCCCCe----------------eEeccCCc-----ccCCcceEEEEecCCCEEEEEeC-CCeE-E
Confidence 44 455677776653211110 00000000 01223578899998877666654 7766 5
Q ss_pred EeCCCCeeeeEEecc--CCccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 013873 298 FQYNGGRSREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWK 342 (434)
Q Consensus 298 wd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 342 (434)
+..+.++.-...... ....+.++.|.+++. +++++.+|.|.-++
T Consensus 274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 566666544443321 125678888876655 55566788776655
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.75 E-value=0.0069 Score=52.03 Aligned_cols=224 Identities=12% Similarity=0.075 Sum_probs=110.3
Q ss_pred ceEEeee-CC-----CcEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCC-----CcEEEeeCCCCC---C
Q 013873 80 KGFFSGS-MD-----GDIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD-----CTVKLWNVPVAT---L 143 (434)
Q Consensus 80 ~~l~sg~-~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~iwd~~~~~---~ 143 (434)
.+++.|+ .+ ..+.+||..+.+-.. .+....... ++. ..++..++.|+.+ ..+.+||..+.. .
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 5666666 33 368999988765322 111111111 222 2356677777765 468889987765 3
Q ss_pred CCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCccee--eeecCCCceEEEEEcCC
Q 013873 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPA 214 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~ 214 (434)
........ + ......+. .++.+++.++ .++.+||+.+.+-.. .+.........+.+ +
T Consensus 94 ~~~~~~p~----~------r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~ 159 (301)
T 2vpj_A 94 YSVAPMNV----R------RGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S 159 (301)
T ss_dssp EEECCCSS----C------CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T
T ss_pred EECCCCCC----C------ccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C
Confidence 22111000 0 00111111 2455666654 258899987764322 22211111222222 3
Q ss_pred CCcEEEEEecCC-----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 215 EPNVLATTASDR-----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 215 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+ .+++.|+.++ .+.+||+.+......- ...........+.+ ++++++.|
T Consensus 160 ~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-----------------------~~p~~r~~~~~~~~--~~~i~v~G 213 (301)
T 2vpj_A 160 G-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-----------------------PMATKRSGAGVALL--NDHIYVVG 213 (301)
T ss_dssp T-EEEEECCBCSSCBCCCEEEEETTTTEEEEEC-----------------------CCSSCCBSCEEEEE--TTEEEEEC
T ss_pred C-EEEEECCCCCCcccceEEEEeCCCCcEEeCC-----------------------CCCcccccceEEEE--CCEEEEEe
Confidence 4 6777777553 4666776554221100 00000111112222 66777777
Q ss_pred eCC-----CcEEEEeCCCCeeeeEEeccCC-ccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCccc
Q 013873 290 SYD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 347 (434)
Q Consensus 290 ~~d-----~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~~ 347 (434)
+.+ ..+.+||+.+.+.......... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 764 4689999988765443221111 11122222 67777888765 357788876543
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.72 E-value=0.022 Score=50.45 Aligned_cols=243 Identities=8% Similarity=0.094 Sum_probs=154.2
Q ss_pred EEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCC
Q 013873 72 MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (434)
.-.+|.. +.+|.=. ..++.|+|+++...+..+.- ...|.-=.|..+. .|+-.+ +..|.-|++...
T Consensus 71 AIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~---------- 135 (494)
T 1bpo_A 71 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE---------- 135 (494)
T ss_dssp EEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSS----------
T ss_pred eeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCC----------
Confidence 4467775 6666544 67899999999998888774 4466666776554 444444 458999999653
Q ss_pred CCCCceeEEEe-----cCceEEEeeccCCCEEEEeC---------CeEEEEeCCCCcceeeeecCCCceEEEEEcCC--C
Q 013873 152 NSSEPLAVYVW-----KNSFWAVDHQWEGDLFATAG---------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA--E 215 (434)
Q Consensus 152 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--~ 215 (434)
..+...+.. ...|.....+++.++++..| |.+.+|..+.+. -..+.+|......+....+ .
T Consensus 136 --s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~ 212 (494)
T 1bpo_A 136 --SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEE 212 (494)
T ss_dssp --CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSE
T ss_pred --CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCC
Confidence 244444443 23566677788888776543 458899887653 3456666555444443321 1
Q ss_pred CcEEEEEecC---CcEEEEEccCCC-cceEEEeeecCceeEEEeeCCCCccceeeee---CcccCeEEEEEccCCCEEEE
Q 013873 216 PNVLATTASD---RSITLYDLRMSS-PARKVIMRANEDCNCYSYDSRKLDEAKCVHM---GHESAVMDIDYSPTGREFVT 288 (434)
Q Consensus 216 ~~~l~~~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~ 288 (434)
..+|+.+... +.+++.++.... ....+. .....++. ....-..++..|+.-..++.
T Consensus 213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-----------------kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----------------KKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp EEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----------------CEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----------------ceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 1344444432 688888885431 110000 00000111 22344567888988888999
Q ss_pred EeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 289 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
-+.-|.|.+||+.++.++..-.... ..|...+-+....-++.....|.|.--.++....+.
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~-~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EecCceEEEEecccceeeeeecccC-CceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 9999999999999999887765544 567666666665566667788988888887766553
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.69 E-value=0.04 Score=52.55 Aligned_cols=155 Identities=8% Similarity=-0.064 Sum_probs=88.9
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeC--CCcEEEeeCCCCCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT--DCTVKLWNVPVATLT 144 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~ 144 (434)
.....+++.+.+.+++++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 568889999866466667677889999998754433333334455778999997666665543 35666666643211
Q ss_pred CCCCCCCCCCCceeEE-EecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEE
Q 013873 145 DSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 220 (434)
.... ........+++++++..+..++ +.|..+|+..................+++..+ .+++
T Consensus 163 ------------~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~ 228 (619)
T 3s94_A 163 ------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYW 228 (619)
T ss_dssp ------------EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEE
T ss_pred ------------EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEE
Confidence 1111 1123456788888665555444 35888887654332222211222345666543 5566
Q ss_pred EEecCCcEEEEEccCC
Q 013873 221 TTASDRSITLYDLRMS 236 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~ 236 (434)
+-...+.|...|..++
T Consensus 229 td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 229 TDWSTHSILACNKYTG 244 (619)
T ss_dssp ECTTTCSEEEEESSSC
T ss_pred ecCCCCEEEEEECCCC
Confidence 6556677777776554
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.66 E-value=0.01 Score=51.03 Aligned_cols=224 Identities=13% Similarity=0.171 Sum_probs=107.9
Q ss_pred ceEEeeeCC----CcEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeCC-----CcEEEeeCCCCCCCCCCC
Q 013873 80 KGFFSGSMD----GDIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTD-----CTVKLWNVPVATLTDSDD 148 (434)
Q Consensus 80 ~~l~sg~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~ 148 (434)
.+++.|+.+ ..+.+||+.+.+-... +...... .++.. -++..++.||.+ ..+.+||..+........
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 456666643 4688899887653221 1111111 12222 256677777755 357888887665432211
Q ss_pred CCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCccee--eeecCCCceEEEEEcCCCCcEE
Q 013873 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVL 219 (434)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l 219 (434)
... + .... ++.. .++.+++.++ .++.+||+.+.+-.. .+.........+.+ ++ .++
T Consensus 95 ~p~----~------r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iy 159 (302)
T 2xn4_A 95 MRD----R------RSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLY 159 (302)
T ss_dssp CSS----C------CBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred CCc----c------ccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEE
Confidence 110 0 0001 1111 2455555554 248889987764322 12111111122222 23 677
Q ss_pred EEEecC-------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 220 ATTASD-------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 220 ~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
+.|+.+ ..+.+||+.+......- . ..........+.+ ++++++.|+.+
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-------------------~----~p~~r~~~~~~~~--~~~iyv~GG~~ 214 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWTYIA-------------------E----MSTRRSGAGVGVL--NNLLYAVGGHD 214 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEEEEC-------------------C----CSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEEECC-------------------C----CccccccccEEEE--CCEEEEECCCC
Confidence 777643 23666776544321100 0 0000111122222 67777888765
Q ss_pred -----CcEEEEeCCCCeeeeEEeccCC-ccEEEEEEcCCCCEEEEeeCCC-----cEEEeecCccc
Q 013873 293 -----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDT-----NLRLWKAKASE 347 (434)
Q Consensus 293 -----~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg-----~v~vw~~~~~~ 347 (434)
..+.+||+.+++.......... .....+. -++++++.|+.++ .+.+||+.+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3689999988765443211110 1111222 2677788887654 48888887654
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.64 E-value=0.034 Score=56.95 Aligned_cols=217 Identities=9% Similarity=0.082 Sum_probs=125.4
Q ss_pred cEEEEeCCCCceeEEeec-cCCCeeEEEE---cCC-CCeEEEee----------CCCcEEEeeCCCCCCCCCCCCCCCCC
Q 013873 90 DIRLWDIANRRTVCQYSG-HQGAVRGLTV---STD-GRILVSCG----------TDCTVKLWNVPVATLTDSDDSTDNSS 154 (434)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~-h~~~v~~i~~---~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~ 154 (434)
.|++.|..+.+.+..+.- ....+.+++. ..+ ..+|++|. ..|.|.+|++...+ .
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-----------L 876 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-----------L 876 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-----------E
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-----------E
Confidence 467777777766555432 2234555543 222 46888775 34789999986322 2
Q ss_pred CceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceee-eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEc
Q 013873 155 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (434)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~ 233 (434)
..+.....++.+.+++-- +|.++++.+..+++|++...+.+.. ..... .+..+.....+ +++++|..-..|.++..
T Consensus 877 ~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 877 QTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKG-DFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp EEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEET-TEEEEEESSBCEEEEEE
T ss_pred EEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccC-CEEEEEEhhheEEEEEE
Confidence 344444556777777654 4678888888999999987654441 11111 12222222234 67778877777777665
Q ss_pred cCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------ee
Q 013873 234 RMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG--------RS 305 (434)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--------~~ 305 (434)
+.... ++... ....+...++++.+-.+ ..++.+..+|.+.++..... ++
T Consensus 954 ~~~~~--~L~~~--------------------a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L 1010 (1158)
T 3ei3_A 954 KPMEG--NFEEI--------------------ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHL 1010 (1158)
T ss_dssp ETTTT--EEEEE--------------------EECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBE
T ss_pred EcCCC--eEEEE--------------------EeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCcccccee
Confidence 43221 11110 11234567888888654 47888999999999876542 12
Q ss_pred eeEEeccCCccEEEEE---EcCC---------CCEEEEeeCCCcEEEeec
Q 013873 306 REIYHTKRMQRVFCVK---FSCD---------ASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 306 ~~~~~~~~~~~v~~~~---~s~~---------~~~l~s~~~dg~v~vw~~ 343 (434)
......+....|+++. +.+. ...++.++.+|.|-+.-.
T Consensus 1011 ~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1011 QEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred eeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 2222222335677765 2332 234677888999877643
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.57 E-value=0.0079 Score=53.16 Aligned_cols=165 Identities=13% Similarity=0.196 Sum_probs=99.2
Q ss_pred eeccCCCEEEEeCCeEEEEeCCCCcceeeeecC----CCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEee
Q 013873 170 DHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG----TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 245 (434)
....+..+++..++.|+.-++......+.+... -..|..+..+|+| .+|+..+ +..|.+..+..+.....- ..
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~-~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVED-VS 104 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCC-HH
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcc-cc
Confidence 334445566666777888887754444444432 2357889999999 6666554 568999888743211100 00
Q ss_pred ecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCeee-eEEe--------ccC
Q 013873 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGGRSR-EIYH--------TKR 313 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~~-~~~~--------~~~ 313 (434)
......++.|...... .....+|..+.|+|- +..|++-..|+.|++||+...... ..+. ...
T Consensus 105 ~~~~~q~~ty~l~~~~------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEE------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp HHHTTEEEEEEGGGCC--------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred cccccceeEEEcCCcc------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 0011223334433211 124678999999994 568999999999999999852211 1121 111
Q ss_pred CccEEEEEEcCCCCEEEEee--CCCcEEEeec
Q 013873 314 MQRVFCVKFSCDASYVISGS--DDTNLRLWKA 343 (434)
Q Consensus 314 ~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~ 343 (434)
...|.+++|.+++-.|...+ .+|.|+-.-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEESS
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEECC
Confidence 25688999998877666644 7787766543
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.54 E-value=0.039 Score=48.52 Aligned_cols=243 Identities=11% Similarity=0.102 Sum_probs=125.0
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc-eeEEee---ccCCCeeEEEEcCC---CCeEEEeeC----C----
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYS---GHQGAVRGLTVSTD---GRILVSCGT----D---- 130 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~i~~~~~---~~~l~s~~~----d---- 130 (434)
-..-..++|.|+| . |+.+..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG-~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-R-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETT-E-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCC-e-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4567899999998 6 44455669999997 3444 222211 12356889999997 445554433 2
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCce-eEEEe--cCceEEEeeccCCCEEEEeC---------------CeEEEEeCCC
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPL-AVYVW--KNSFWAVDHQWEGDLFATAG---------------AQVDIWNHNR 192 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d~~~ 192 (434)
+.|..|+....... . .....+ ..... ......+.+.|+|.++++.+ +.|.-++...
T Consensus 105 ~~v~r~~~~~~~~~--~----~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 105 NRVIRGRLDGSTFK--L----KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEEEEECSSSCC--E----EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred eEEEEEEECCCCcC--c----CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 56777776543100 0 000111 11111 11235688999998887743 2355555432
Q ss_pred Cc-------ceeeeecCCCceEEEEEcCCCCcEEEEEecCCc---EEEEEccCCCcceEEEeeecCceeEEEeeC-----
Q 013873 193 SQ-------PINSFQWGTDTVISVRFNPAEPNVLATTASDRS---ITLYDLRMSSPARKVIMRANEDCNCYSYDS----- 257 (434)
Q Consensus 193 ~~-------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----- 257 (434)
.- ....+...-.....++|+|+...++++-..... |.+. ..+.. |-|..
T Consensus 179 ~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~n--------------yGwp~~~g~~ 242 (354)
T 3a9g_A 179 RPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGN--------------YGWPLATGKA 242 (354)
T ss_dssp CCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCB--------------CCTTTCCSCC
T ss_pred CCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCc--------------CCCCcccCCC
Confidence 10 011121122335678888843355554332221 2221 11110 00000
Q ss_pred --CCCccceeeeeCcccCeEEEEEc-------cCCCEEEEEeCCCcEEEEeCCCC-eee--eEEeccCCccEEEEEEcCC
Q 013873 258 --RKLDEAKCVHMGHESAVMDIDYS-------PTGREFVTGSYDRTIRIFQYNGG-RSR--EIYHTKRMQRVFCVKFSCD 325 (434)
Q Consensus 258 --~~~~~~~~~~~~~~~~i~~~~~s-------p~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~s~~ 325 (434)
.....+...+.........++|. .+|.++++.-..+.|...++... ... ..+.......+..+++.||
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD 322 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD 322 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC
Confidence 00111222221123457788883 56777777666778888888753 222 2222222357899999999
Q ss_pred CCEEEEee
Q 013873 326 ASYVISGS 333 (434)
Q Consensus 326 ~~~l~s~~ 333 (434)
|.+.++..
T Consensus 323 G~lyv~~~ 330 (354)
T 3a9g_A 323 GGILISTS 330 (354)
T ss_dssp SCEEEEEC
T ss_pred CcEEEEEe
Confidence 98766654
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.036 Score=48.44 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=46.7
Q ss_pred ccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Ceee--eEEeccCCccEEEEEEcC-CCCEEEEeeCC-CcEEEeec
Q 013873 271 ESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNG-GRSR--EIYHTKRMQRVFCVKFSC-DASYVISGSDD-TNLRLWKA 343 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d-g~v~vw~~ 343 (434)
-...+.++||||++.|+.+. ..+.|..|++.. +... ..+. ..+..-.+++++ +|++.+++..+ +.|..|+.
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 34578999999998877665 567899999864 3221 2232 125567889998 59877766543 34444443
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.041 Score=50.40 Aligned_cols=212 Identities=11% Similarity=0.056 Sum_probs=112.9
Q ss_pred eeEEEEcC-CCCeEEEeeC-CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEee-------ccCCC-EEEEe
Q 013873 112 VRGLTVST-DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH-------QWEGD-LFATA 181 (434)
Q Consensus 112 v~~i~~~~-~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~ 181 (434)
...|+|+| +...|+.+.. .+.|++.|+..+.+........ ........+++ ++++. ++++.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~---------~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT---------IPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT---------SSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc---------cccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 45789998 3444555443 4678888887654321110000 01124678889 99998 55554
Q ss_pred CCe--------EEEEeCCC-Ccce-----eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc-------CCCcce
Q 013873 182 GAQ--------VDIWNHNR-SQPI-----NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR-------MSSPAR 240 (434)
Q Consensus 182 ~~~--------i~i~d~~~-~~~~-----~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~ 240 (434)
... +.+++... +... ..+.. -.....++++|++..++++-..++.|..+|+. ++....
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 321 66665433 1221 12222 12346788899766888888888999999987 333200
Q ss_pred EEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcEEEEeCCC--Ceee--eEEecc--C
Q 013873 241 KVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNG--GRSR--EIYHTK--R 313 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~--~~~~--~~~~~~--~ 313 (434)
...... .+. .... ...+.......|+|+|+|++|+.+ +....|+.++... +... ..+... .
T Consensus 291 p~~~~~--~g~---------~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 291 PIVKNN--PNT---------FKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp CBGGGC--TTT---------EEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred cccccc--ccc---------ccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence 000000 000 0000 001223446789999999965555 4567888866543 3220 112110 0
Q ss_pred ------------CccEE-EEEEc-------CCCCEEEEeeCCCcEEEeecCcc
Q 013873 314 ------------MQRVF-CVKFS-------CDASYVISGSDDTNLRLWKAKAS 346 (434)
Q Consensus 314 ------------~~~v~-~~~~s-------~~~~~l~s~~~dg~v~vw~~~~~ 346 (434)
-.... .++.. +++.++++=..++.|+.++. ++
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 01234 45554 45666666667788988883 44
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.44 E-value=0.027 Score=48.43 Aligned_cols=224 Identities=9% Similarity=0.039 Sum_probs=108.6
Q ss_pred ceEEeeeC--CCcEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCC----CcEEEeeCCCCCCCCCCCCCC
Q 013873 80 KGFFSGSM--DGDIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD----CTVKLWNVPVATLTDSDDSTD 151 (434)
Q Consensus 80 ~~l~sg~~--dg~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~ 151 (434)
.+++.|+. ...+.+||..+.+-.. .+......-..+. -++..++.||.+ ..+.+||..+...........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 55666664 3578999988765322 1211111122222 256677777755 568888887664322111000
Q ss_pred CCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCccee--eeecCCCceEEEEEcCCCCcEEEE
Q 013873 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLAT 221 (434)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l~~ 221 (434)
+ ......+ .-++.+++.++ .++.+||..+.+-.. .+.........+.+ ++ .+++.
T Consensus 91 ----~------r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~ 155 (306)
T 3ii7_A 91 ----P------RDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVC 155 (306)
T ss_dssp ----C------CBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred ----c------ccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEE
Confidence 0 0011111 12555666655 238899988764322 12111111122222 33 66666
Q ss_pred EecC---------CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC
Q 013873 222 TASD---------RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292 (434)
Q Consensus 222 ~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 292 (434)
|+.+ ..+.+||+.+......- ........-..+.+ ++++++.|+.+
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-----------------------~~p~~r~~~~~~~~--~~~i~v~GG~~ 210 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWTELC-----------------------PMIEARKNHGLVFV--KDKIFAVGGQN 210 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEEEEC-----------------------CCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEEECC-----------------------CccchhhcceEEEE--CCEEEEEeCCC
Confidence 6642 34667776554221100 00000111112222 66777777654
Q ss_pred -----CcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCccc
Q 013873 293 -----RTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 347 (434)
Q Consensus 293 -----~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~~ 347 (434)
..+.+||+.+.+....-.... .....++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 358899998876543321111 112223333 67788888754 457888887653
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.43 E-value=0.045 Score=47.09 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=109.3
Q ss_pred ceEEeeeCC----CcEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeC----C-----CcEEEeeCCCCCCC
Q 013873 80 KGFFSGSMD----GDIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGT----D-----CTVKLWNVPVATLT 144 (434)
Q Consensus 80 ~~l~sg~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~----d-----g~v~iwd~~~~~~~ 144 (434)
.+++.|+.+ ..+.+||..+.+-... +......- +++. -++.+++.||. + ..+.+||..+....
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 566666642 3689999877653221 11111111 2222 25667777765 2 46788888776543
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCccee--eeecCCCceEEEEEcCCC
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~ 215 (434)
....... + ........ -++.+++.++ .++.+||+.+.+-.. .+.........+.+ ++
T Consensus 104 ~~~~~p~----~------r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 104 PCAPMSV----P------RNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp ECCCCSS----C------CBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred ECCCCCc----C------ccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence 2211110 0 00111111 2555666655 358899987764322 12211112222222 33
Q ss_pred CcEEEEEecCC-----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 216 PNVLATTASDR-----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 216 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
.+++.|+.++ .+.+||+.+......- . .......-..+.+ ++++++.|+
T Consensus 170 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------------------~----~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 170 -LLYAVGGFDGTNRLNSAECYYPERNEWRMIT-------------------A----MNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp -EEEEECCBCSSCBCCCEEEEETTTTEEEECC-------------------C----CSSCCBSCEEEEE--TTEEEEECC
T ss_pred -EEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-------------------C----CCCccccceEEEE--CCEEEEEeC
Confidence 6777777653 4666776544221100 0 0000111122223 667777777
Q ss_pred CC-----CcEEEEeCCCCeeeeEEeccCC-ccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCccc
Q 013873 291 YD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 347 (434)
Q Consensus 291 ~d-----~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~~ 347 (434)
.+ ..+.+||+.+.+.......... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 65 4699999988765433211110 11122222 67777788754 346778876543
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.32 E-value=0.071 Score=46.42 Aligned_cols=260 Identities=11% Similarity=0.104 Sum_probs=129.8
Q ss_pred cccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee--EEe----eccCCCeeEEEEcCC---CCeEEEe---e
Q 013873 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQY----SGHQGAVRGLTVSTD---GRILVSC---G 128 (434)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~----~~h~~~v~~i~~~~~---~~~l~s~---~ 128 (434)
.+...-..-..|+|.|+| .++++--..|.|++++..++... ..+ .........|+++|+ +..|+.. .
T Consensus 26 ~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 344445677899999998 76666655899999987655432 111 123456789999995 3444443 2
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCCcee-EEEe--cCceEEEeeccCCCEEEEeC---------------CeEEEEeC
Q 013873 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLA-VYVW--KNSFWAVDHQWEGDLFATAG---------------AQVDIWNH 190 (434)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d~ 190 (434)
.++.|.-|.+........ ... ....+. .... ...-..+.|.|+|.++++.+ +.|.-++.
T Consensus 105 ~~~~v~R~~~~~~~~~~~--~~~-~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGE--QLG-APDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp SSEEEEEEEBCTTSCTTC--CBC-CCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred CCCEEEEEEeCCCCcccc--cCC-CcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 345666666654221000 000 011111 1111 11234688999998888743 23444454
Q ss_pred CCCc-------ceeeeecCCCceEEEEEcCCCCcEEEEE-ecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCcc
Q 013873 191 NRSQ-------PINSFQWGTDTVISVRFNPAEPNVLATT-ASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262 (434)
Q Consensus 191 ~~~~-------~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
...- ....+...-.....++|+|++ .++++- +.|+.-.|.-+..+....--...+. .+......
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~-------~~~~~~~~ 253 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGK-------GGGSGFHD 253 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSS-------CCCTTCCC
T ss_pred CCCccCCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCC-------CCCccccC
Confidence 3220 011222222345678888866 444432 2233222222221110000000000 00011222
Q ss_pred ceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeee---eEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR---EIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 263 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
+...+..+......++|. +|..++..-..+.|....+...... ..+.......+.+|+..|||.++++.+
T Consensus 254 P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 254 PVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 333333333456777776 4655665555666777777655321 223223336799999999998766543
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.26 E-value=0.071 Score=45.38 Aligned_cols=221 Identities=10% Similarity=0.146 Sum_probs=130.8
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceE
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (434)
+.+|.|.|+.++.....-.- ..-+.-.+|..+.+|.-. ..++.++|+++... +........+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~k-------------lks~~~~e~Vv 110 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-------------MKAHTMTDDVT 110 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-------------EEEEECSSCEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhh-------------hcceecCCccE
Confidence 34789999988655433211 112334588887777655 67899999987732 33333334444
Q ss_pred EEeeccCCCEEEEeCCeEEEEeCCC-CcceeeeecC----CCceEEEEEcCCCCcEEEEEec------CCcEEEEEccCC
Q 013873 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTAS------DRSITLYDLRMS 236 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 236 (434)
-=.|-.+..+-+..+..|+.|++.. ..+...+..| ...|..-..+++..-++++|-. .|.+.+|..+..
T Consensus 111 fWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 111 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp EEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc
Confidence 4455555556666677899999874 4565555544 3567788888888555555532 245556655432
Q ss_pred CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccC---CCEEEEEeC---CCcEEEEeCCCC---e---
Q 013873 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT---GREFVTGSY---DRTIRIFQYNGG---R--- 304 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~---d~~i~iwd~~~~---~--- 304 (434)
..+.+.+|.+.-..+.+..+ ..+|+.+.. .+.++|-++... .
T Consensus 191 --------------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 191 --------------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp --------------------------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred --------------------------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 12233455544333322111 112333322 257888888432 1
Q ss_pred ---eeeEEecc--CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccccc
Q 013873 305 ---SREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 351 (434)
Q Consensus 305 ---~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 351 (434)
....+... ...-..++..++.-..++.-+.-|.|++||++++.++..
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 11112111 123355788888888888889999999999999988743
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.23 E-value=0.051 Score=46.91 Aligned_cols=224 Identities=10% Similarity=0.085 Sum_probs=108.5
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeE-EeeccCCCeeEEEEcCCCCeEEEeeC----C-------CcEEEeeCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGT----D-------CTVKLWNVPVATLTDSD 147 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~~ 147 (434)
.+++.|+ ..+.+||..+.+-.. .+..............++..++.||. + ..+..||..+.......
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 3455565 579999998876432 12211122223333457777777773 1 12677888766543221
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC----------CeEEEEeCCCCcce--eeeecCCCceEEEEEcCCC
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----------AQVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAE 215 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~ 215 (434)
.. +.... .. ++.. -++.+++.++ .++.+||..+.+-. ..+.........+. .++
T Consensus 84 ~~------p~~r~----~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~ 149 (315)
T 4asc_A 84 PL------PSPRC----LF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD 149 (315)
T ss_dssp CB------SSCEE----SC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT
T ss_pred CC------Ccchh----ce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC
Confidence 11 10000 00 1111 1455555555 23889998876422 22221111122222 233
Q ss_pred CcEEEEEec-C-----CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 216 PNVLATTAS-D-----RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 216 ~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
.+++.|+. + ..+.+||+.+..-...- . .......-..+.+ ++++++.|
T Consensus 150 -~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-------------------~----~p~~r~~~~~~~~--~~~iyv~G 203 (315)
T 4asc_A 150 -LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-------------------P----MQTARSLFGATVH--DGRIIVAA 203 (315)
T ss_dssp -EEEEECCBCTTSCBCCCEEEEETTTTEEEECC-------------------C----CSSCCBSCEEEEE--TTEEEEEE
T ss_pred -EEEEEeCCCCCCcccceEEEEeCCCCeEEECC-------------------C----CCCchhceEEEEE--CCEEEEEe
Confidence 67777776 2 35677776654221100 0 0000111112222 66778888
Q ss_pred eCCC-----cEEEEeCCCCeeeeEEeccCC-ccEEEEEEcCCCCEEEEeeCCC--------------cEEEeecCccc
Q 013873 290 SYDR-----TIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDT--------------NLRLWKAKASE 347 (434)
Q Consensus 290 ~~d~-----~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg--------------~v~vw~~~~~~ 347 (434)
+.++ .+.+||+.+.+.......... .....+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 204 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 204 GVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 7654 488999988765443321111 11122222 667777777532 36778877654
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.11 E-value=0.13 Score=45.53 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=78.7
Q ss_pred ceEEEeeccCCCEEEEeC-CeEEEEeCCCCcc------------eeeeec------CCCceEEEEEcCCCCc--EEEEEe
Q 013873 165 SFWAVDHQWEGDLFATAG-AQVDIWNHNRSQP------------INSFQW------GTDTVISVRFNPAEPN--VLATTA 223 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~------------~~~~~~------~~~~i~~i~~~~~~~~--~l~~~~ 223 (434)
.+..+..+|+|.+++..+ .+|.|..+..+.. ...+.. ....|..+.|||-+.+ .|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 456688999999999887 5688888873321 112222 2467999999997643 888999
Q ss_pred cCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe--CCCcEEEE
Q 013873 224 SDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS--YDRTIRIF 298 (434)
Q Consensus 224 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iw 298 (434)
.|+.|++||+........ .+. .... ..-.......|.+++|.++|-.|...+ .+|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~--k~~~------------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLN--KPNN------------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EES--CCCS------------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chh--cccc------------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999986332221 111 0000 011123446789999999887777755 77887653
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.10 E-value=0.074 Score=42.47 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=85.6
Q ss_pred CceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeec-------CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCC
Q 013873 164 NSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW-------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 236 (434)
..+..++++|+|.+.+..++.+.-.+..+.....-+.. .-....++.|.|++ .+.++ .||.|.-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcC
Confidence 36779999999999988778877777655322111111 01124788999988 55555 6798887765332
Q ss_pred CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe------eeeEEe
Q 013873 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR------SREIYH 310 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~ 310 (434)
....-+ + ....+-..--..+..|.+.|+|.+.+.. |+.++-+...++. ....+.
T Consensus 118 ~~~~Wl------------~------~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g 177 (236)
T 1tl2_A 118 DTDNWI------------A------RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG 177 (236)
T ss_dssp TTCCHH------------H------HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred CCCcee------------c------cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec
Confidence 111000 0 0001111223467899999999877766 7775443322111 011111
Q ss_pred ccCCccEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 013873 311 TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343 (434)
Q Consensus 311 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 343 (434)
...-..-.-+.|.+++.+.++. +| ++|..
T Consensus 178 ~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 178 QGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp SSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred cCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 1222234557789998877665 66 44444
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.96 E-value=0.17 Score=44.37 Aligned_cols=265 Identities=14% Similarity=0.111 Sum_probs=129.2
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEE---e----eccCCCeeEEEEcCC---CCeEEEee-C-----
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ---Y----SGHQGAVRGLTVSTD---GRILVSCG-T----- 129 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~----~~h~~~v~~i~~~~~---~~~l~s~~-~----- 129 (434)
-..-..|+|.|+| ..|+.+...|.|++++.. +..... + .........|+|+|+ +..|+.+. .
T Consensus 17 l~~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDN-HGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTT-CCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCC-CEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3467899999998 634455567999999853 332111 1 112345689999995 44555442 2
Q ss_pred --CCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEe-------cCceEEEeeccCCCEEEEeC---------------CeE
Q 013873 130 --DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW-------KNSFWAVDHQWEGDLFATAG---------------AQV 185 (434)
Q Consensus 130 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---------------~~i 185 (434)
...|..|++....... ......... ...-..+.+.|+|.++++.+ +.|
T Consensus 95 ~~~~~v~r~~~~~~~~~~--------~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I 166 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKV--------TDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL 166 (353)
T ss_dssp CEEEEEEEEEECTTSSBE--------EEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred CceeEEEEEEECCCCCCC--------CceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence 2346666654321000 000011110 11134688999997777643 246
Q ss_pred EEEeCCCCc------------ceeeeecCCCceEEEEEcCCCCcEEEEEec-CCcEEEEEccCCCcce-EEEeee-cCce
Q 013873 186 DIWNHNRSQ------------PINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPAR-KVIMRA-NEDC 250 (434)
Q Consensus 186 ~i~d~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~-~~~~ 250 (434)
.-++....- ....+...-.....++|+|....++++-.. ++.=.|.-+..+.... ...... ..++
T Consensus 167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 666654320 112222223456789999943355544221 2111222221111000 000000 0000
Q ss_pred eEEE----eeCCCCccceeeeeCcccCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCeeeeE--EeccCCccE
Q 013873 251 NCYS----YDSRKLDEAKCVHMGHESAVMDIDYSP-------TGREFVTGSYDRTIRIFQYNGGRSREI--YHTKRMQRV 317 (434)
Q Consensus 251 ~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v 317 (434)
.... ........+...+. +...+..++|.. +|.++++.-..+.|...++..+..... +.......+
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred CccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 0000 00001112222222 334577788863 467777776778888888876643322 222222578
Q ss_pred EEEEEcCCCCEEEEee-CCCcEEEeec
Q 013873 318 FCVKFSCDASYVISGS-DDTNLRLWKA 343 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~~-~dg~v~vw~~ 343 (434)
..+++.|||.+.++.. .+| +||.+
T Consensus 326 ~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred eEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 9999999998666433 344 45544
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.96 E-value=0.19 Score=51.69 Aligned_cols=245 Identities=10% Similarity=0.122 Sum_probs=136.9
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceE
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (434)
..+|.|.|+.++..+..-. -.--+.-.+|..+.++.=. ..++.|+|+++.....+.... .++...
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~----e~VvfW------- 111 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----DDVTFW------- 111 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC----CCceEE-------
Confidence 3478899988765442211 1112233578777666544 679999999877554433321 122222
Q ss_pred EEeeccCCCEEEEeCCeEEEEeCCC-CcceeeeecC----CCceEEEEEcCCCCcEEEEEe------cCCcEEEEEccCC
Q 013873 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTA------SDRSITLYDLRMS 236 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~------~dg~i~iwd~~~~ 236 (434)
.|-....+-+..+..|+.|++.. ..|...+..| ...|..-..+++..-++++|- -.|.+.+|.....
T Consensus 112 --kWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 112 --KWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred --EecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 33334445555667799999964 3454444443 456777788888755555553 3578888887543
Q ss_pred Cc--------------------ceEE---EeeecCceeEEEeeCCCC--cc------ceeeeeC---cccCeEEEEEccC
Q 013873 237 SP--------------------ARKV---IMRANEDCNCYSYDSRKL--DE------AKCVHMG---HESAVMDIDYSPT 282 (434)
Q Consensus 237 ~~--------------------~~~~---~~~~~~~~~~~~~~~~~~--~~------~~~~~~~---~~~~i~~~~~sp~ 282 (434)
.. ...+ .......+.+.+.+.... +. ...++.. ...-..++..|+.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 11 0011 111112244444443222 00 0111111 1222345666776
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 283 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 283 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
-..++.-+.-|.|.+||+.++.++..-.... .+|...+-+....-++.....|.|.--.++....+.
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~-~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccC-CceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 6778888889999999999998766554332 455555544433345555577777776666655543
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.93 E-value=0.46 Score=48.80 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCCeEEEEeCCCC-----CceEEeeeC-CCcEEEEeCCCCceeEEeec-cCCCeeEEEEcC--CCCeEEEeeCCCcEEEe
Q 013873 66 RDGISCMAKNPNY-----LKGFFSGSM-DGDIRLWDIANRRTVCQYSG-HQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (434)
Q Consensus 66 ~~~V~~~~~~~~~-----~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~i~~~~--~~~~l~s~~~dg~v~iw 136 (434)
...|.|+++.|.. ..+++.|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4589999998642 268899996 99999999987766544221 112344444432 34578889999998766
Q ss_pred eCC
Q 013873 137 NVP 139 (434)
Q Consensus 137 d~~ 139 (434)
.++
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.89 E-value=0.22 Score=44.33 Aligned_cols=220 Identities=10% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceE
Q 013873 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (434)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (434)
+.+|.|.|+.++.....-. -..-+.-.+|..+.++.=. ..++.|+|+++... .........+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-------------lks~~~~e~Vv 109 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-------------MKAHTMTDDVT 109 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-------------EEEEECSSCCC
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-------------hcceecCCCce
Confidence 3478999998865543222 1122344688877777655 67999999987633 22222233333
Q ss_pred EEeeccCCCEEEEeCCeEEEEeCCC-CcceeeeecC----CCceEEEEEcCCCCcEEEEEec------CCcEEEEEccCC
Q 013873 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTAS------DRSITLYDLRMS 236 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 236 (434)
-=.|-.+..+-+..+..|+.|++.. ..+...+..| ...|..-..+++..-++++|-. .|.+.+|.....
T Consensus 110 fWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 3344445555556667899999864 3565555544 4568888888888555555532 355666665432
Q ss_pred CcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCC---CEEEEEeC---CCcEEEEeCCCC---e---
Q 013873 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---REFVTGSY---DRTIRIFQYNGG---R--- 304 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~---d~~i~iwd~~~~---~--- 304 (434)
..+.+.+|.+.-..+.+..+. .+|+.+.. .+.++|-++... .
T Consensus 190 --------------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 190 --------------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp --------------------------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred --------------------------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 222334665544433332111 13333333 268888888542 1
Q ss_pred ---eeeEEecc--CCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 305 ---SREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 305 ---~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
....+... ...-..++..++.-..++.-+.-|.|++||+.++.++.
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 11111111 12334578888888888888999999999999998764
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.80 E-value=0.077 Score=45.89 Aligned_cols=139 Identities=9% Similarity=0.181 Sum_probs=84.4
Q ss_pred CeEEEEeCCCCcceeeeecCCCceEEEEEcCC----CCc--EEEEEe-c--CCcEEEEEccCCC-cceEEEeeecCceeE
Q 013873 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA----EPN--VLATTA-S--DRSITLYDLRMSS-PARKVIMRANEDCNC 252 (434)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~~--~l~~~~-~--dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 252 (434)
+.+.+||+ .++.+..+.. +.+..+..-|. +.. ++++.. . +.+|.+|++.... ....+. .
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~---~----- 118 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT---D----- 118 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS---C-----
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc---c-----
Confidence 46999999 8888888754 55677776662 111 233333 3 5789999874222 111110 0
Q ss_pred EEeeCCCCccceeeeeCcccCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC---C----CeeeeEEeccCCccEEEEE
Q 013873 253 YSYDSRKLDEAKCVHMGHESAVMDIDY--SPT-GR-EFVTGSYDRTIRIFQYN---G----GRSREIYHTKRMQRVFCVK 321 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--sp~-~~-~l~~~~~d~~i~iwd~~---~----~~~~~~~~~~~~~~v~~~~ 321 (434)
...+. ......+..+++ +|. +. ++++...+|.+..|++. . .+.+..+... +.+-.+.
T Consensus 119 -------~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egcv 186 (355)
T 3amr_A 119 -------PDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMA 186 (355)
T ss_dssp -------TTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEE
T ss_pred -------cccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEE
Confidence 00000 011145666777 774 44 68888889999999983 2 2344444443 5688899
Q ss_pred EcCCCCEEEEeeCCCcEEEeecC
Q 013873 322 FSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 322 ~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
..+....|+.+-.+..|..++.+
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECS
T ss_pred EcCCCCeEEEecccceEEEEeCC
Confidence 99988899999888555555533
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.72 E-value=0.14 Score=43.78 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=91.1
Q ss_pred ceEEeeeCC-----CcEEEEeCCCCc---eeE--EeeccCCCeeEEEEcCCCCeEEEeeCC-----CcEEEeeCCCCCCC
Q 013873 80 KGFFSGSMD-----GDIRLWDIANRR---TVC--QYSGHQGAVRGLTVSTDGRILVSCGTD-----CTVKLWNVPVATLT 144 (434)
Q Consensus 80 ~~l~sg~~d-----g~i~iwd~~~~~---~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 144 (434)
.+++.|+.+ ..+.+||..+.+ -.. .+......-.++.+ ++..++.|+.+ ..+.+||..+....
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 677777755 469999988765 222 22211111222222 56677777654 35778887665432
Q ss_pred CCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-------CeEEEEeCCCCcceee--eecCCCceEEEEEcCCC
Q 013873 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPINS--FQWGTDTVISVRFNPAE 215 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~ 215 (434)
..... .....-.++. ..++.+++.++ .++.+||+.+.+-... +.........+.+ ++
T Consensus 142 ~~~~~-----------p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 207 (301)
T 2vpj_A 142 MLGDM-----------QTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND 207 (301)
T ss_dssp EEEEC-----------SSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred ECCCC-----------CCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC
Confidence 11000 0000001111 12556666654 3488999877643222 2111111222222 23
Q ss_pred CcEEEEEecC-----CcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 216 PNVLATTASD-----RSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 216 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
.+++.|+.+ ..+.+||+.+......- . ..........+.+ ++++++.|+
T Consensus 208 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-------------------~----~p~~r~~~~~~~~--~~~i~v~GG 261 (301)
T 2vpj_A 208 -HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-------------------S----MTTPRCYVGATVL--RGRLYAIAG 261 (301)
T ss_dssp -EEEEECCBCSSSBCCCEEEEETTTTEEEEEC-------------------C----CSSCCBSCEEEEE--TTEEEEECC
T ss_pred -EEEEEeCCCCCcccceEEEEeCCCCcEEECC-------------------C----CCCcccceeEEEE--CCEEEEEcC
Confidence 677777764 35777777654321100 0 0000111122222 677778887
Q ss_pred CC-----CcEEEEeCCCCeee
Q 013873 291 YD-----RTIRIFQYNGGRSR 306 (434)
Q Consensus 291 ~d-----~~i~iwd~~~~~~~ 306 (434)
.+ ..|.+||+.+.+..
T Consensus 262 ~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp BCSSSBEEEEEEEETTTTEEE
T ss_pred cCCCcccccEEEEcCCCCeEE
Confidence 65 35788998877643
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.69 E-value=0.17 Score=40.39 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=77.6
Q ss_pred ceEEeeeCCCcEEEEeCCCCc------eeEEeec-cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRR------TVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDN 152 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~------~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 152 (434)
.+|+....| +++.=...++. ....+-. -=..+.+++|+|+|.+.++ .+|.+.-.+..+.....-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~---- 77 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG---- 77 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH----
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc----
Confidence 566777777 65554444333 1122221 1247889999999875555 67776655543321100000
Q ss_pred CCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCccee------ee-ecCCCceEEEEEcCCCCcEEEEEecC
Q 013873 153 SSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPIN------SF-QWGTDTVISVRFNPAEPNVLATTASD 225 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~------~~-~~~~~~i~~i~~~~~~~~~l~~~~~d 225 (434)
....+-...+ ....++.+.++|.+.++.++.|+-++..+..... .+ ...=..+..|.+.|+| .+.++. |
T Consensus 78 s~t~IG~~Gw-~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--d 153 (236)
T 1tl2_A 78 RAKKIGNGGW-NQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--G 153 (236)
T ss_dssp HCEEEECSCG-GGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--T
T ss_pred cccEeccccc-ccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--C
Confidence 0000000011 2257889999999999988888888764422111 11 1111467899999998 555555 7
Q ss_pred CcEEE
Q 013873 226 RSITL 230 (434)
Q Consensus 226 g~i~i 230 (434)
|.+.-
T Consensus 154 g~lyr 158 (236)
T 1tl2_A 154 QQFYK 158 (236)
T ss_dssp TEEEE
T ss_pred CcEEe
Confidence 87543
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.68 E-value=0.36 Score=43.96 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCcee--EEeec------cCCCeeEEEEcCC---CCeEEEeeC-----
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQYSG------HQGAVRGLTVSTD---GRILVSCGT----- 129 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~------h~~~v~~i~~~~~---~~~l~s~~~----- 129 (434)
-..-..|+|.|+| .++++-...+.|++++..++... ..+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4467799999998 76666544457998886555432 22221 2356779999995 455554432
Q ss_pred --------CCcEEEeeCCCCCCCCCCCCCCCCCCceeEE---E--ecCceEEEeeccCCCEEEEeC
Q 013873 130 --------DCTVKLWNVPVATLTDSDDSTDNSSEPLAVY---V--WKNSFWAVDHQWEGDLFATAG 182 (434)
Q Consensus 130 --------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~ 182 (434)
...|.-|++....... .....+. . .......+.+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~--------~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTL--------EKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEE--------EEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCc--------CCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1345555543221000 0001111 1 112357889999998877643
No 325
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.63 E-value=0.26 Score=41.66 Aligned_cols=227 Identities=12% Similarity=0.094 Sum_probs=123.8
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
.|..++..... .++. . ||.|+.|-......+..-......|..++....- .++. . ||.|..|-.........
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~- 96 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV- 96 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-
Confidence 57777766542 3333 4 8999999765432221111123467777765442 2333 4 89999997654322211
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
+.. ....+..++......++++ ++.++.|-.+....+..-......|..++.... +.++. . ||.
T Consensus 97 --------P~~---~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l-~-~G~ 160 (282)
T 3qhy_B 97 --------PAE---ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV-K-NGG 160 (282)
T ss_dssp --------CGG---GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTE
T ss_pred --------Ccc---cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE-E-CCE
Confidence 100 0235667777777777788 889999987653322211122345777766542 23333 3 799
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 307 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 307 (434)
|..|-......... + ..-...|..++...+. .++. .||.|+.|-....-.+.
T Consensus 161 v~~wG~n~~gqlg~---------------------p----~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 161 VIAWGDNYFGQTTV---------------------P----AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp EEEEECCTTSTTSC---------------------C----GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC
T ss_pred EEEecCCCCCCCCC---------------------c----eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC
Confidence 99997654332210 0 0112457777654332 3333 58999999765432221
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 308 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 308 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
.. ......|..++...+..++++ ||.|+.|-.....++.
T Consensus 213 ~p-~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 213 VP-TEALSGVSAIASGEWYSLALK---NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp CC-GGGGSSCCEEEECSSCEEEEE---TTEEEEESTTCCCCGG
T ss_pred CC-cccCCCceEEEcCCCEEEEEE---CCEEEEecCCCCcccc
Confidence 11 111245677776544433333 8999999877655543
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.57 E-value=0.066 Score=47.12 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=29.0
Q ss_pred cEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCC------cEEEeecCcccccccC
Q 013873 294 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT------NLRLWKAKASEQLGVL 352 (434)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~v~vw~~~~~~~~~~~ 352 (434)
.+.+||+.+.+....-.... ......+...++++++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSS-CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCC-CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 57889998765443321111 1111112233778888888543 3556688877765433
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.46 E-value=0.15 Score=43.64 Aligned_cols=186 Identities=8% Similarity=0.138 Sum_probs=91.8
Q ss_pred ceEEeeeCC----CcEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeCC------CcEEEeeCCCCCCCCCC
Q 013873 80 KGFFSGSMD----GDIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTD------CTVKLWNVPVATLTDSD 147 (434)
Q Consensus 80 ~~l~sg~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~ 147 (434)
.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.......
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 677777755 5688999887653222 2211111122222 56677777765 45888888776543221
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-----------CeEEEEeCCCCccee--eeecCCCceEEEEEcCC
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPA 214 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~ 214 (434)
.... + .... ++. ..++.+++.++ .++.+||+.+.+-.. .+.........+.+ +
T Consensus 135 ~~p~----~------r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 200 (306)
T 3ii7_A 135 SMLT----Q------RCSH-GMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--K 200 (306)
T ss_dssp CCSS----C------CBSC-EEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred CCcC----C------ccee-EEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--C
Confidence 1100 0 0000 111 12555555554 238889987764322 12111111122222 3
Q ss_pred CCcEEEEEecCC-----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 215 EPNVLATTASDR-----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 215 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+ .+++.|+.++ .+.+||+.+..-... .. ..........+.+ ++.+++.|
T Consensus 201 ~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-------------------~~----~p~~r~~~~~~~~--~~~i~v~G 254 (306)
T 3ii7_A 201 D-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-------------------SP----MPWKGVTVKCAAV--GSIVYVLA 254 (306)
T ss_dssp T-EEEEECCEETTEEBCCEEEEETTTTEEEEC-------------------CC----CSCCBSCCEEEEE--TTEEEEEE
T ss_pred C-EEEEEeCCCCCCCCceEEEeeCCCCcEEEC-------------------CC----CCCCccceeEEEE--CCEEEEEe
Confidence 3 6777776543 466777655422110 00 0001111222333 67778888
Q ss_pred eCC-----CcEEEEeCCCCeeee
Q 013873 290 SYD-----RTIRIFQYNGGRSRE 307 (434)
Q Consensus 290 ~~d-----~~i~iwd~~~~~~~~ 307 (434)
+.+ ..+.+||+.+.+...
T Consensus 255 G~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 255 GFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp CBCSSSBCCEEEEEETTTTEEEE
T ss_pred CcCCCeeeeeEEEEcCCCCeEEe
Confidence 754 468899998876443
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.27 E-value=0.44 Score=46.20 Aligned_cols=147 Identities=10% Similarity=0.146 Sum_probs=77.4
Q ss_pred ceEEeeeCC----CcEEEEeCCCCceeEEe-e------ccCCCeeEEEEcC-CCCeEEEeeCCC------cEEEeeCCCC
Q 013873 80 KGFFSGSMD----GDIRLWDIANRRTVCQY-S------GHQGAVRGLTVST-DGRILVSCGTDC------TVKLWNVPVA 141 (434)
Q Consensus 80 ~~l~sg~~d----g~i~iwd~~~~~~~~~~-~------~h~~~v~~i~~~~-~~~~l~s~~~dg------~v~iwd~~~~ 141 (434)
.+++.|+.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.||.++ .+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 667777753 46889998776533221 1 0111112333333 677777777543 4777887765
Q ss_pred CCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC----eEEEEeCCCCcceee-----eecCCCceEEEEEc
Q 013873 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA----QVDIWNHNRSQPINS-----FQWGTDTVISVRFN 212 (434)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~i~d~~~~~~~~~-----~~~~~~~i~~i~~~ 212 (434)
........ + ....-.+.....++.+++.||. ++.+||..+.+-... .........++.+.
T Consensus 479 ~W~~~~~~------p-----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 479 EWSMIKSL------S-----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp EEEECCCC------S-----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEECCCC------C-----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 44322110 0 0011112222236777777763 699999887643221 11112222335555
Q ss_pred CCCCcEEEEEec--C-----CcEEEEEccCCC
Q 013873 213 PAEPNVLATTAS--D-----RSITLYDLRMSS 237 (434)
Q Consensus 213 ~~~~~~l~~~~~--d-----g~i~iwd~~~~~ 237 (434)
.....+++.|+. + ..+..||+.+..
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 543467888876 2 347788877665
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.16 E-value=0.54 Score=40.38 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCC--------------CcEEEe
Q 013873 282 TGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD--------------TNLRLW 341 (434)
Q Consensus 282 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d--------------g~v~vw 341 (434)
+++.++.|+.+ ..+.+||+.+.+......... ......+. -++++++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 66777777654 347789988776443321111 01112222 256777777754 357788
Q ss_pred ecCccc
Q 013873 342 KAKASE 347 (434)
Q Consensus 342 ~~~~~~ 347 (434)
|+.+.+
T Consensus 284 d~~~~~ 289 (318)
T 2woz_A 284 EDDKKE 289 (318)
T ss_dssp ETTTTE
T ss_pred eCCCCE
Confidence 877654
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.11 E-value=0.23 Score=42.42 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=90.2
Q ss_pred ceEEeeeCC-----CcEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeCCC-----cEEEeeCCCCCCCCCC
Q 013873 80 KGFFSGSMD-----GDIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTDC-----TVKLWNVPVATLTDSD 147 (434)
Q Consensus 80 ~~l~sg~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~ 147 (434)
.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++..++.||.++ .+.+||+.+.......
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 677777755 3588999887653221 2111111122222 566777777653 4777887766543221
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---------CeEEEEeCCCCccee--eeecCCCceEEEEEcCCCC
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEP 216 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~ 216 (434)
.... + ... .++.. .++.+++.++ .++.+||+.+.+-.. .+.........+.+ ++
T Consensus 141 ~~p~----~------r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~- 205 (302)
T 2xn4_A 141 PMNT----R------RSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN- 205 (302)
T ss_dssp CCSS----C------CBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-
T ss_pred CCCC----c------ccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-
Confidence 1100 0 000 11111 2455555554 248889987764322 22211112222222 23
Q ss_pred cEEEEEecCC-----cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeC
Q 013873 217 NVLATTASDR-----SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291 (434)
Q Consensus 217 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 291 (434)
.+++.|+.++ .+.+||+.+......- ... ... .....+.+ ++++++.|+.
T Consensus 206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------------------~~~---~~r-~~~~~~~~--~~~i~v~GG~ 260 (302)
T 2xn4_A 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-------------------DMN---MCR-RNAGVCAV--NGLLYVVGGD 260 (302)
T ss_dssp EEEEECCBSSSSBCCCEEEEETTTTEEEEEC-------------------CCS---SCC-BSCEEEEE--TTEEEEECCB
T ss_pred EEEEECCCCCCcccceEEEEeCCCCCEeeCC-------------------CCC---Ccc-ccCeEEEE--CCEEEEECCc
Confidence 6777777653 5777776654321100 000 000 11112222 6777788876
Q ss_pred CC-----cEEEEeCCCCeee
Q 013873 292 DR-----TIRIFQYNGGRSR 306 (434)
Q Consensus 292 d~-----~i~iwd~~~~~~~ 306 (434)
++ .+.+||+.+.+..
T Consensus 261 ~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CSSSBCCCEEEEETTTTEEE
T ss_pred CCCcccccEEEEcCCCCeEE
Confidence 54 4889999877643
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.48 Score=41.03 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=41.8
Q ss_pred ceEEeeeCCCcEEEEeCCCCceeEEeecc-CCCeeEEEEc--C-CCCeEEEe-eCCCcEEEeeCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVS--T-DGRILVSC-GTDCTVKLWNVPVA 141 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~--~-~~~~l~s~-~~dg~v~iwd~~~~ 141 (434)
.+++.++.||.|.-+|..+|+....+... ..++....-. + ++..++.. +.||.|..++..++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence 67899999999999999999999888653 1222221100 1 22333333 57999999997655
No 332
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.06 E-value=0.67 Score=40.56 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCC---CCceEEeeeCC-----CcEEEEeCCCCc-----ee-EEee---ccCCCeeEEEEcCCCCeEEEee
Q 013873 66 RDGISCMAKNPN---YLKGFFSGSMD-----GDIRLWDIANRR-----TV-CQYS---GHQGAVRGLTVSTDGRILVSCG 128 (434)
Q Consensus 66 ~~~V~~~~~~~~---~~~~l~sg~~d-----g~i~iwd~~~~~-----~~-~~~~---~h~~~v~~i~~~~~~~~l~s~~ 128 (434)
......|+|+|+ +..+.++-... +.|..|+...+. .+ ..+. ........++|.|+|.+.++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 457899999998 42444443332 678888876432 11 1132 1112346899999997666644
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.89 E-value=0.7 Score=39.47 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=38.3
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeeeEEeccC-CccEEEEEEcCCCCEEEEeeCC-----CcEEEeecCccc
Q 013873 282 TGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 347 (434)
Q Consensus 282 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~v~vw~~~~~~ 347 (434)
++++++.|+.+ ..+.+||+.+........... ......+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 66777777765 458999998876543321111 011222233 67777778764 458889887654
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.65 E-value=1.8 Score=42.36 Aligned_cols=231 Identities=11% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCC
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (434)
...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+.....
T Consensus 62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS 135 (758)
T ss_dssp SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE
T ss_pred CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE
Confidence 4579998887775 456666665 789998776443211112335776654 344 45555655 57788876543211
Q ss_pred CCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceee-eec----CCCceEEEEEcCCCCcEEE
Q 013873 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINS-FQW----GTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~----~~~~i~~i~~~~~~~~~l~ 220 (434)
... .........+.++....++.+.+...+.+..++..+++.... ... ....|.++...+++ ..|.
T Consensus 136 ~~~--------~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lW 206 (758)
T 3ott_A 136 FDT--------RRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVW 206 (758)
T ss_dssp ECH--------HHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-TEEE
T ss_pred ecc--------CCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCC-CEEE
Confidence 000 000001235677777778887766666688888776543211 111 12347788777665 4444
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
.|+. +-+..+|..+..... +. . .....|.++...++|.+.+ |+.+ -+.+++.
T Consensus 207 igt~-~Gl~~~~~~~~~~~~-~~----------------------~--l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~ 258 (758)
T 3ott_A 207 IGTE-GYLFQYFPSTGQIKQ-TE----------------------A--FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHN 258 (758)
T ss_dssp EEEE-EEEEEEETTTTEEEE-EE----------------------E--EEEEEEEEEEECTTCCEEE-EETT-EEEEECC
T ss_pred EEEC-CCCeEEcCCCCeEEe-cc----------------------C--CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEec
Confidence 4554 457778765432211 10 0 0123578888887777554 4444 4888888
Q ss_pred CCCeeeeEEec------cCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 301 NGGRSREIYHT------KRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 301 ~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
.++........ -....|.++....+|.+-+ |+..| +.++
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 259 DTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp TTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred CCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 76544322211 1124588998888887544 44556 5444
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.64 E-value=0.72 Score=42.46 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=52.9
Q ss_pred cccCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC------Cee-----eeEEeccCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 270 HESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNG------GRS-----REIYHTKRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 270 ~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~------~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
-......+..+|||+++++++ .+.++.++|++. ++. .......-.......+|.++|....+--.|..
T Consensus 321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce
Confidence 344556789999999977665 578899999873 111 01111112245678999999955555568999
Q ss_pred EEEeecCcc
Q 013873 338 LRLWKAKAS 346 (434)
Q Consensus 338 v~vw~~~~~ 346 (434)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999764
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.85 E-value=1.7 Score=37.27 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=66.7
Q ss_pred CCCCceEEeeeC----CC-------cEEEEeCCCCceeEE--eeccCCCeeEEEEcCCCCeEEEeeCC-------CcEEE
Q 013873 76 PNYLKGFFSGSM----DG-------DIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTD-------CTVKL 135 (434)
Q Consensus 76 ~~~~~~l~sg~~----dg-------~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d-------g~v~i 135 (434)
.++ .+++.|+. ++ .+.+||..+.+-... +....... +++.. ++..++.||.+ ..+.+
T Consensus 55 ~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred ECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence 344 66777763 12 177888876643221 11111111 22222 56677777754 34777
Q ss_pred eeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC--------CeEEEEeCCCCccee--eeecCCCc
Q 013873 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPIN--SFQWGTDT 205 (434)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~--~~~~~~~~ 205 (434)
||..+......... +.... .. ++. ..++.+++.++ .++.+||+.+.+-.. .+......
T Consensus 132 yd~~~~~W~~~~~~------p~~r~----~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 199 (318)
T 2woz_A 132 YDPVAAKWSEVKNL------PIKVY----GH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM 199 (318)
T ss_dssp EETTTTEEEEECCC------SSCEE----SC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred EeCCCCCEeECCCC------CCccc----cc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc
Confidence 88876654322110 00000 00 111 13556666654 248999988764322 12111111
Q ss_pred eEEEEEcCCCCcEEEEEecCC-----cEEEEEccCC
Q 013873 206 VISVRFNPAEPNVLATTASDR-----SITLYDLRMS 236 (434)
Q Consensus 206 i~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 236 (434)
..++.+ ++ .+++.|+.++ .+.+||+.+.
T Consensus 200 ~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 200 FGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCC
Confidence 222222 23 6777776543 3556666544
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.79 E-value=1.7 Score=37.12 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCCCceEEeeeC----C-------CcEEEEeCCCCceeE--EeeccCCCeeEEEEcCCCCeEEEeeCC--------CcEE
Q 013873 76 PNYLKGFFSGSM----D-------GDIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD--------CTVK 134 (434)
Q Consensus 76 ~~~~~~l~sg~~----d-------g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d--------g~v~ 134 (434)
.++ .+++.|+. + ..+.+||..+.+-.. .+......- +++.. ++..++.||.+ ..+.
T Consensus 44 ~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 44 KEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp TTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred ECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence 344 67777763 1 127788887765321 111111111 12222 55666777642 4588
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCC--------eEEEEeCCCCcce--eeeecCCC
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--------QVDIWNHNRSQPI--NSFQWGTD 204 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~i~d~~~~~~~--~~~~~~~~ 204 (434)
+||..+........... + .... ++. ..++.+++.++. ++.+||+.+.+-. ..+.....
T Consensus 121 ~~d~~~~~W~~~~~~p~----~------r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 188 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPY----V------VYGH-TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS 188 (315)
T ss_dssp EEETTTTEEEECCCCSS----C------CBSC-EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred EECCCCCcEeECCCCCC----c------ccce-eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh
Confidence 88887765432211110 0 0001 111 134556666542 4899998876422 22221111
Q ss_pred ceEEEEEcCCCCcEEEEEecCC-----cEEEEEccCC
Q 013873 205 TVISVRFNPAEPNVLATTASDR-----SITLYDLRMS 236 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 236 (434)
...++.+ ++ .+++.|+.++ .+.+||+.+.
T Consensus 189 ~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 189 LFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp SCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred ceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCC
Confidence 1222222 33 7777887654 3666666554
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.72 E-value=0.62 Score=40.78 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeeeeEE
Q 013873 282 TGREFVTGSYDR------TIRIFQYNGGRSREIY 309 (434)
Q Consensus 282 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~ 309 (434)
++++++.||.++ .|.++++++++.....
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 678888888653 3666788887765544
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.72 E-value=1.7 Score=36.92 Aligned_cols=197 Identities=8% Similarity=0.034 Sum_probs=99.5
Q ss_pred CCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCC--------------CcEEEeeCCCCCCCCCCCCCCC
Q 013873 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD--------------CTVKLWNVPVATLTDSDDSTDN 152 (434)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--------------g~v~iwd~~~~~~~~~~~~~~~ 152 (434)
.++.|+..+.+... ...+... . +--+++++.+|+-+... ..|+..+++....
T Consensus 35 d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--------- 100 (302)
T 3s25_A 35 DNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--------- 100 (302)
T ss_dssp GTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC---------
T ss_pred CCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc---------
Confidence 35667777765444 3333322 1 23457888888876543 3566666654421
Q ss_pred CCCceeEEEecCceEEEeeccCCCEEEEeC----C--eEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCC
Q 013873 153 SSEPLAVYVWKNSFWAVDHQWEGDLFATAG----A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 226 (434)
..+. ... ...+++++..++-.+ + .|...++.... ...+..+.. ..+++++..++.+.....
T Consensus 101 ----~~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 101 ----TVLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp ----EEEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred ----eEee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 1111 111 224566776665432 2 46677776443 333333222 345677766665554456
Q ss_pred cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCC--CcEEEEeCCCCe
Q 013873 227 SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD--RTIRIFQYNGGR 304 (434)
Q Consensus 227 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~ 304 (434)
.|...++...... .+ .. +... ..++|++.+|+-...+ ..|..-++....
T Consensus 168 ~Iy~~~l~g~~~~-~l------------------------~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 168 QLYRYDTASQSEA-LF------------------------YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp CEEEEETTTTEEE-EE------------------------EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eEEEEECCCCCEE-EE------------------------eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 6777666543321 11 11 1111 2355888887766544 356666676554
Q ss_pred eeeEEeccCCccEEEEEEcCCCCEEEEeeC--CCcEEEeecCc
Q 013873 305 SREIYHTKRMQRVFCVKFSCDASYVISGSD--DTNLRLWKAKA 345 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~vw~~~~ 345 (434)
.. .+.. ..+ ..|+|++.+|+.++. .+.|..-++..
T Consensus 219 ~~-~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 219 PV-VLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp CE-ECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred eE-EEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 32 2221 223 236777887775532 34455545443
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.57 E-value=0.75 Score=39.99 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEcc
Q 013873 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281 (434)
Q Consensus 202 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 281 (434)
.-.....|+|.|++ .+|++--..|.|++++....... .+.. ...+..........|+++|
T Consensus 30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~-~v~~------------------~~~v~~~g~~GllGia~~P 89 (347)
T 3das_A 30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKT-ELGE------------------VPGVSPSGEGGLLGIALSP 89 (347)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-EEEE------------------CTTCCCBTTBSEEEEEECT
T ss_pred CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEe-eecc------------------cCceeecCCCCceeeEecc
Confidence 34567899999998 66666555899998875443221 1100 0001112356788999999
Q ss_pred C---CCEEEEE---eCCCcEEEEeCCCC-----e---eeeEE---eccCCccEEEEEEcCCCCEEEEee
Q 013873 282 T---GREFVTG---SYDRTIRIFQYNGG-----R---SREIY---HTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 282 ~---~~~l~~~---~~d~~i~iwd~~~~-----~---~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
+ +.+|+.. ..++.|.-|.+..+ . ....+ ..........|+|.|||.+.++.+
T Consensus 90 df~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 90 DYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp THHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred ccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 5 3444432 23556666766542 1 11111 111112345799999998777754
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.35 E-value=4.3 Score=39.77 Aligned_cols=244 Identities=7% Similarity=0.077 Sum_probs=128.8
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
.|.++...+++ ..|..|+. +-+..+|..+++...........|.++....+|.+.+ |+.+ -+.+++..+.......
T Consensus 192 ~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHII 267 (758)
T ss_dssp CEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEEC
T ss_pred eeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEE
Confidence 48888887765 54455554 4588899877654322111234688888887776554 4444 5778887655432111
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeee-------cCCCceEEEEEcCCCCcEEE
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-------WGTDTVISVRFNPAEPNVLA 220 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~ 220 (434)
..... ... -....+.++....+|.+-+...+.+.++.... ....+. .....|.++....++ . |.
T Consensus 268 ~~~~~-~~~----l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~-lW 338 (758)
T 3ott_A 268 HDSRN-IQS----LTNNIIWNIFADQEHNIWLGTDYGISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKG-F-YW 338 (758)
T ss_dssp CCTTC-TTS----CSCSCEEEEEECTTCCEEEEESSSEEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC-C-EE
T ss_pred cCCCC-cCc----CCcCeEEEEEEcCCCCEEEEeCCcccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCC-C-EE
Confidence 00000 000 01345677777777766554443355443321 111111 113468888877766 3 44
Q ss_pred EEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 013873 221 TTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 300 (434)
Q Consensus 221 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 300 (434)
.|+.+| +..++..+....... .+....... .-....|.++.-..+|++.+ |+ ++-+..||.
T Consensus 339 iGt~~G-l~~~~~~~~~~~~~~-----------~~~~~~~~~-----~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 339 FGGANG-LIRFTDPAGERHDAI-----------WYRMGDKTY-----PLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDY 399 (758)
T ss_dssp EEETTE-EEEESCTTSSCCCCE-----------EECTTCSSS-----CCSCSCEEEEEECTTSCEEE-EE-TTEEEEEET
T ss_pred EeeCCc-ceeecccccccceeE-----------EeccCCcCC-----CCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCc
Confidence 455555 555654432111000 000000000 01234688888888887544 44 456899999
Q ss_pred CCCeeeeEEecc-----CCccEEEEEEcCCCCEEEEeeCCCcEEEeecC
Q 013873 301 NGGRSREIYHTK-----RMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 301 ~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 344 (434)
.+++........ ....|.++.-..+|.+. .|+..+-|.+++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~ 447 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW-ISTCLGGIFVVDKH 447 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE-EEESSSCEEEEEHH
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE-EEECCCceEEEccc
Confidence 887653322111 12458888887777644 46666668888754
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.33 E-value=3 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=39.3
Q ss_pred cCceEEEeeccCCCEEEEeC--CeEEEEeCCCCcce--eeeec------CCCceEEEEEcCC---CCcEEEEEe
Q 013873 163 KNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI--NSFQW------GTDTVISVRFNPA---EPNVLATTA 223 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~--~~~~~------~~~~i~~i~~~~~---~~~~l~~~~ 223 (434)
-...+.+++.|+|.++++.. +.|.+++...+... ..+.. .......|+|+|+ +..+.++-+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 34567899999999988875 35888876555432 22211 2456779999995 435554443
No 343
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.25 E-value=2.6 Score=36.86 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=100.0
Q ss_pred CCCeEEEEeCCC---CCceEEeeeC---C----CcEEEEeCCCC-------cee-EEeec-cCCCeeEEEEcCCCCeEEE
Q 013873 66 RDGISCMAKNPN---YLKGFFSGSM---D----GDIRLWDIANR-------RTV-CQYSG-HQGAVRGLTVSTDGRILVS 126 (434)
Q Consensus 66 ~~~V~~~~~~~~---~~~~l~sg~~---d----g~i~iwd~~~~-------~~~-~~~~~-h~~~v~~i~~~~~~~~l~s 126 (434)
......|+++|+ +..+.++-+. + +.|..|+.... +.+ ..+.. .......|.|.|+|.++++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 456889999997 4244444332 3 56888887654 111 11221 1123467999999986666
Q ss_pred eeCC-------------CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeCC-----eEEE
Q 013873 127 CGTD-------------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGA-----QVDI 187 (434)
Q Consensus 127 ~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~i~i 187 (434)
.+.. |.|.-++.+.. ... ...................+++++ ++.++++..+ .|.+
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~----~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~ 226 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGR-PPA----DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNI 226 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSC-CCT----TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEE
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCC-CCC----CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEE
Confidence 4432 34444443311 100 000001112222334456889999 7777776543 2544
Q ss_pred EeCCC----------------CcceeeeecCCCceEEEEEc-------CCCCcEEEEEecCCcEEEEEccCCCcceEEEe
Q 013873 188 WNHNR----------------SQPINSFQWGTDTVISVRFN-------PAEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (434)
Q Consensus 188 ~d~~~----------------~~~~~~~~~~~~~i~~i~~~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 244 (434)
..... ..++..+.........++|. .++ .++++....+.|...++.........
T Consensus 227 i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~-- 303 (354)
T 3a9g_A 227 ILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKI-- 303 (354)
T ss_dssp ECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEE--
T ss_pred ecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccce--
Confidence 33211 01222221123356777774 334 56666556667777776542111000
Q ss_pred eecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
...+.+....+..+++.|||.++++..
T Consensus 304 -------------------~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 304 -------------------STFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp -------------------EEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred -------------------eeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 001112245688999999997666653
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.25 E-value=1.5 Score=42.49 Aligned_cols=201 Identities=11% Similarity=0.132 Sum_probs=97.1
Q ss_pred CCCCeEEEeeCC----CcEEEeeCCCCCCCCCC-CCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC--------Ce
Q 013873 119 TDGRILVSCGTD----CTVKLWNVPVATLTDSD-DSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--------AQ 184 (434)
Q Consensus 119 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~ 184 (434)
.++..++.||.+ ..+.+||..+....... ..... . ........++.... ++.+++.|| ++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~-~-----~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~d 469 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS-E-----VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSD 469 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS-C-----CCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC-C-----CCccccceEEEEEccCCEEEEEcCCCCCCCcccc
Confidence 456677777754 45778887766432211 00000 0 00001111222222 566666665 24
Q ss_pred EEEEeCCCCcce--eeeecCCCceEEEEEcCCCCcEEEEEecCC--cEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 185 VDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 185 i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
+.+||..+.+-. ..+....... +++...++ .+++.|+.++ .+.+||+.+......- ..
T Consensus 470 v~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~----------------~~ 531 (695)
T 2zwa_A 470 NWIFDMKTREWSMIKSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVT----------------PK 531 (695)
T ss_dssp CEEEETTTTEEEECCCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECC----------------CS
T ss_pred EEEEeCCCCcEEECCCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEcc----------------CC
Confidence 888998875322 2222211222 22232244 7888887655 5788887664321100 00
Q ss_pred ccceeeeeCcccCeEEEEEccC-CCEEEEEeC--C-----CcEEEEeCCCCe------eeeEEe-c-cCCccEEEEEEcC
Q 013873 261 DEAKCVHMGHESAVMDIDYSPT-GREFVTGSY--D-----RTIRIFQYNGGR------SREIYH-T-KRMQRVFCVKFSC 324 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~--d-----~~i~iwd~~~~~------~~~~~~-~-~~~~~v~~~~~s~ 324 (434)
.... ........+.+..+ ++.++.||. + +.+.+||+.+.. ...... . ...... +++...
T Consensus 532 g~~p----~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~ 606 (695)
T 2zwa_A 532 DEFF----QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYIT 606 (695)
T ss_dssp SGGG----GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEE
T ss_pred CCCC----CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeC
Confidence 0000 01111123445554 667777775 2 358899998876 222211 1 111112 233333
Q ss_pred CCCEEEEeeCC--------CcEEEeecCcccc
Q 013873 325 DASYVISGSDD--------TNLRLWKAKASEQ 348 (434)
Q Consensus 325 ~~~~l~s~~~d--------g~v~vw~~~~~~~ 348 (434)
++++++.|+.+ ..|.+||+.+.+-
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 47777777743 4588999877654
No 345
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.04 E-value=4.2 Score=35.46 Aligned_cols=116 Identities=7% Similarity=-0.003 Sum_probs=56.7
Q ss_pred CCCeEEEEeCCC---CCceEEeeeC-------CCcEEEEeCCCC--c--eeEE-eec------cCCCeeEEEEcCCCCeE
Q 013873 66 RDGISCMAKNPN---YLKGFFSGSM-------DGDIRLWDIANR--R--TVCQ-YSG------HQGAVRGLTVSTDGRIL 124 (434)
Q Consensus 66 ~~~V~~~~~~~~---~~~~l~sg~~-------dg~i~iwd~~~~--~--~~~~-~~~------h~~~v~~i~~~~~~~~l 124 (434)
......++|+|+ +..+.++-+. ...|..|++... . .... +.. ....-..|.|.|+|.+.
T Consensus 65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Ly 144 (353)
T 2g8s_A 65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLF 144 (353)
T ss_dssp TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEE
Confidence 456789999996 3244444332 235777766533 1 1111 111 11123579999999655
Q ss_pred EEeeCC-------------CcEEEeeCCCCCCC-CCCCCCCCCCCceeEEEecCceEEEeecc-CCCEEEEeC
Q 013873 125 VSCGTD-------------CTVKLWNVPVATLT-DSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG 182 (434)
Q Consensus 125 ~s~~~d-------------g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 182 (434)
++.+.. |.|.-++.+..... +.+... .................+++.+ ++.++++..
T Consensus 145 v~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~-~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 145 IALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKE-SGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp EEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTS-TTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCC-CCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 554432 35655555421000 000000 0001222223344567899999 676666543
No 346
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.82 E-value=7.4 Score=37.68 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=42.6
Q ss_pred ccCeEEEEEccCCCEEEEEeCCCc--EEEEeCCCCee-eeE-EeccCCccEEEEEEcCCCC-EEEEee---CCCcEEEee
Q 013873 271 ESAVMDIDYSPTGREFVTGSYDRT--IRIFQYNGGRS-REI-YHTKRMQRVFCVKFSCDAS-YVISGS---DDTNLRLWK 342 (434)
Q Consensus 271 ~~~i~~~~~sp~~~~l~~~~~d~~--i~iwd~~~~~~-~~~-~~~~~~~~v~~~~~s~~~~-~l~s~~---~dg~v~vw~ 342 (434)
...+..+.|..+ .++++...++. |.++|+.++.. ... +.....+.+..+..++++. ++++.+ .-+.+..+|
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence 346778888865 56777777764 67777766641 222 2222124566666667665 444433 246677777
Q ss_pred cC
Q 013873 343 AK 344 (434)
Q Consensus 343 ~~ 344 (434)
+.
T Consensus 428 ~~ 429 (711)
T 4hvt_A 428 KT 429 (711)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.36 Score=41.78 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=69.1
Q ss_pred cEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE-eCCCcE
Q 013873 217 NVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTI 295 (434)
Q Consensus 217 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i 295 (434)
.+++.++.||.|.-+|..+++...++... . . .+......... ..++..++.. +.||.|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~------------~-~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l 69 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-N------------F-QPLIEIQEPSR-------LETYETLIIEPFGDGNI 69 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-G------------S-CCSEECCCSCT-------TTSSEEEEECCSTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-c------------c-CCcEEecCCcc-------ccCCcEEEEEECCCCEE
Confidence 47888999999999998888766554211 0 0 00000000000 0133333333 579999
Q ss_pred EEEeCCCCeeeeEEeccC---CccEEE---EEE-c----CCCCEEEEeeCCCcEEEeecCcccccccCChh
Q 013873 296 RIFQYNGGRSREIYHTKR---MQRVFC---VKF-S----CDASYVISGSDDTNLRLWKAKASEQLGVLHPR 355 (434)
Q Consensus 296 ~iwd~~~~~~~~~~~~~~---~~~v~~---~~~-s----~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 355 (434)
..++..+|.....+.... .+++.. ... . ..+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 70 ~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 70 YYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred EEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 999998886554443221 112221 000 0 14557889999999999999999998877643
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.27 E-value=3.1 Score=43.29 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCChhhhhhhHHHHHHHHhhhhccccccccccCCCCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCC-CceeEEeecc--
Q 013873 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGH-- 108 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h-- 108 (434)
.+|.....++.. -....+.++-++.-+..+.- ...|.--.|-.. +.|+-.+ +..|+-|++.. ..+.+.+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC--CeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 666665444332 22233333333333333332 345666666655 3344444 35799999964 3444444444
Q ss_pred --CCCeeEEEEcCCCCeEEEee-------CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEE--EecCceEEEeeccCCCE
Q 013873 109 --QGAVRGLTVSTDGRILVSCG-------TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDL 177 (434)
Q Consensus 109 --~~~v~~i~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 177 (434)
...|..-..+++.++++..| -.|.+.+|.++.+...... .+...-...... .....+.+++....
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie-gha~~F~~~~~~~~~~~~~l~~f~~~~~--- 223 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQ--- 223 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh-HhHhhhheeccCCCCCCceEEEEEEecC---
Confidence 34566677788888877544 3588889988655321110 000000000000 00011222221110
Q ss_pred EEEeCCeEEEEeCCCC---cce------eeeec---CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceE
Q 013873 178 FATAGAQVDIWNHNRS---QPI------NSFQW---GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241 (434)
Q Consensus 178 ~~~~~~~i~i~d~~~~---~~~------~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 241 (434)
.|+.++|.++... .+. ..+-. ..+...++..++.. .++..-+.-|.|.+||+.++..+..
T Consensus 224 ---~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 224 ---AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred ---CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhh
Confidence 1357888887443 111 00111 13345567777766 5667778889999999998876643
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.19 E-value=1.4 Score=40.55 Aligned_cols=115 Identities=5% Similarity=0.006 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCC
Q 013873 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284 (434)
Q Consensus 205 ~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 284 (434)
....+.++|+|..++++|-.+.++.++|++.......-.+ . .....+.....-.......+|.++|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~----------~---~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL----------A---DPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC----------S---CGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc----------c---CcccceEeeccCCCcccEEEECCCCc
Confidence 3456788999987888888899999999874211000000 0 00000000011234566789999996
Q ss_pred EEEEEeCCCcEEEEeCCCC----------eeeeEEeccCCccEEEEEE------cCCCCEEEEeeC
Q 013873 285 EFVTGSYDRTIRIFQYNGG----------RSREIYHTKRMQRVFCVKF------SCDASYVISGSD 334 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~------s~~~~~l~s~~~ 334 (434)
-..+---|..|.-|++... ..+..+..+ -.+-.+.- .|||++|++...
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~--YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH--YQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS--SCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc--cCCcccccCCCccCCCCccEEEEecc
Confidence 5566668999999998642 222223222 12223332 578999988753
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.26 E-value=7.3 Score=32.63 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=105.8
Q ss_pred CeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
.|..++..... .++. . ||.|+.|-......+..-..-...|..++...+ ..+.-. ||.|..|=.........
T Consensus 64 ~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~- 135 (282)
T 3qhy_B 64 GVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV- 135 (282)
T ss_dssp CCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-
T ss_pred CEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-
Confidence 57777766553 3333 4 899999976543222111111346777766544 334445 89999997654322110
Q ss_pred CCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCc
Q 013873 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS 227 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 227 (434)
+. .....+..++......++++ ++.+..|-......+..-......|..++.... +.++. .||.
T Consensus 136 --------~~---~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al--~~G~ 199 (282)
T 3qhy_B 136 --------PA---EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL--KDGK 199 (282)
T ss_dssp --------CG---GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE--ETTE
T ss_pred --------Cc---cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE--ECCe
Confidence 00 01234555555544445555 788888876653322211111345777776543 34444 5999
Q ss_pred EEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeee
Q 013873 228 ITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 307 (434)
Q Consensus 228 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 307 (434)
|..|-......... +. .....|..++..... .++.. ||.|+.|-.....+..
T Consensus 200 v~~wG~n~~gqlg~---------------------p~----~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 200 VIAWGDNRYKQTTV---------------------PT----EALSGVSAIASGEWY-SLALK--NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp EEEEECCTTSTTCC---------------------CG----GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCCCCGG
T ss_pred EEEEECCCCCCCCC---------------------Cc----ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCCcccc
Confidence 99997654433210 00 112346666654432 23333 8999999766543322
Q ss_pred EEeccCCccEEEEEEcCCCC
Q 013873 308 IYHTKRMQRVFCVKFSCDAS 327 (434)
Q Consensus 308 ~~~~~~~~~v~~~~~s~~~~ 327 (434)
. ...|.+++-.....
T Consensus 252 v-----~~~v~~iaaG~~h~ 266 (282)
T 3qhy_B 252 V-----QSGVSSIEAGPNAA 266 (282)
T ss_dssp G-----SSCEEEEEECSSCE
T ss_pred C-----CCCcEEEEECcCeE
Confidence 1 13466665554433
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.99 E-value=8.4 Score=35.02 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceee--eeCcccCeEEEEEcc
Q 013873 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMGHESAVMDIDYSP 281 (434)
Q Consensus 204 ~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~sp 281 (434)
.....|+|.|++...|+++...|.|++++.........+. +... .... ..........|+|+|
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~------------~~~~---~~~~g~~~~~e~Gllgia~~P 78 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL------------DIHK---LVQSGIKGGDERGLLSLAFHP 78 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE------------ECTT---TBCCCCSSSCCCSEEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec------------CCcc---eeccCccccCCCcceeeEeCC
Confidence 4467899999984234456678999999743221111110 0000 0000 001245688999999
Q ss_pred C----CCEEEEEeC--C----------CcEEEEeCCCC----------eeeeEEe-ccCCccEEEEEEcCCCCEEEEeeC
Q 013873 282 T----GREFVTGSY--D----------RTIRIFQYNGG----------RSREIYH-TKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 282 ~----~~~l~~~~~--d----------~~i~iwd~~~~----------~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
+ +.+.++-+. + ..|.-|.+..+ +.+..+. .........|+|.|||.+.++.++
T Consensus 79 ~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 79 NYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp THHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 6 444333322 1 13444655421 1222221 111234678999999987777655
Q ss_pred CC
Q 013873 335 DT 336 (434)
Q Consensus 335 dg 336 (434)
.+
T Consensus 159 ~~ 160 (463)
T 2wg3_C 159 GM 160 (463)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.82 E-value=12 Score=37.73 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=32.9
Q ss_pred cCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 272 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
..+.+++..++..++++-+.|+++++|++.++.++...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677888888899999999999999999999887664
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.32 E-value=13 Score=31.57 Aligned_cols=209 Identities=9% Similarity=0.036 Sum_probs=102.9
Q ss_pred EEeCCCCCceEEeee-CC-------------CcEEEEeCCCCceeEEeeccCCCeeEEEEcCCCCeEEEee--CCCc--E
Q 013873 72 MAKNPNYLKGFFSGS-MD-------------GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG--TDCT--V 133 (434)
Q Consensus 72 ~~~~~~~~~~l~sg~-~d-------------g~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--~dg~--v 133 (434)
--+++++ .+|+-+. .+ +.|+..++..++... +.. .. +..|++++++|+-.. .++. |
T Consensus 58 ~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADK-NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECS-SEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeEEEcC-CEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 3467777 5555443 32 467778877665333 321 12 236777888888765 3444 4
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC---CeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
...+++... ...+... .+ ..+++++..+.-.+ ..|...++..+.....+. +... ..
T Consensus 132 y~~~~dGs~-------------~~~lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~ 190 (302)
T 3s25_A 132 YRIRIDGEE-------------KKKIKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KP 190 (302)
T ss_dssp EEEETTSCC-------------CEEEESS--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EE
T ss_pred EEEECCCCC-------------eEEEeCC--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ce
Confidence 444444221 1111111 11 34566776665433 358888877665433332 2222 23
Q ss_pred EcCCCCcEEEEEecCC-cEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEE
Q 013873 211 FNPAEPNVLATTASDR-SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 289 (434)
+.|++..++.+...++ .|..-++.... ... +. ...+ ..|+|++++|+-+
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~------------------------Lt--~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNINNPN--PVV------------------------LT--EANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSSSCC--CEE------------------------CS--CSCE--EEEEEETTEEEEE
T ss_pred eeecCCEEEEEEcCCCcEEEEEECCCCC--eEE------------------------Ee--CCCc--ceEEECCCEEEEE
Confidence 5587755555443332 34444443322 111 11 1122 2377888888765
Q ss_pred e--CCCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee-CCCcEEEeec
Q 013873 290 S--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKA 343 (434)
Q Consensus 290 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~ 343 (434)
. ..+.|..-++.......... . .+. .+++.+.+|+-.. ..+.|..-++
T Consensus 241 ~~~~~~~i~~~~~DG~~r~~l~~-~---~~~--~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 241 RGGDNPALCVVKNDGTGFKELAK-G---EFC--NINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp ECSSSCEEEEEETTSCCCEEEEE-S---CEE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred ECCCCcEEEEEECCCCccEEeeC-C---ccc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence 3 23567777776544333222 2 233 3444666666554 3455544444
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=86.23 E-value=3.4 Score=38.79 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.4
Q ss_pred CeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEe
Q 013873 273 AVMDIDYSPTGREFVTGSYD------------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 332 (434)
Q Consensus 273 ~i~~~~~sp~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 332 (434)
..-.|+|+|.|+++++-..+ +.+.+.+..+++....+.......++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45679999999966654322 2466777778887777766667899999999999988765
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.84 E-value=18 Score=31.82 Aligned_cols=154 Identities=8% Similarity=0.172 Sum_probs=87.0
Q ss_pred CeEEEEeCCCC--cceeeeecC------CCceEEEEEc---CC----CCcEEEEEecCCcEEEEEccCCCcceEEEeeec
Q 013873 183 AQVDIWNHNRS--QPINSFQWG------TDTVISVRFN---PA----EPNVLATTASDRSITLYDLRMSSPARKVIMRAN 247 (434)
Q Consensus 183 ~~i~i~d~~~~--~~~~~~~~~------~~~i~~i~~~---~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 247 (434)
-.|.+||+.+. +.+..+... ...+..+.+. |. +....++=+..+-|.++|+.+++.-+.......
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 45788999998 887776542 3457788877 22 222334444567899999988765543310000
Q ss_pred C-ceeEEEeeCCCCccceeeeeCcccCeEEEEEccC----CCEEEEEeCCCcEEEEeCC-----CC---eeeeEEeccC-
Q 013873 248 E-DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT----GREFVTGSYDRTIRIFQYN-----GG---RSREIYHTKR- 313 (434)
Q Consensus 248 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~----~~~l~~~~~d~~i~iwd~~-----~~---~~~~~~~~~~- 313 (434)
. ....+..+.... .-...+..|+++|+ ++.|+-+...+. ++|.+. .. .....+....
T Consensus 203 pd~~~~~~i~G~~~--------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~ 273 (381)
T 3q6k_A 203 AERPTKFDYGGKEY--------EFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGK 273 (381)
T ss_dssp CCSCEEEEETTEEE--------EECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCT
T ss_pred cccCcceEECCEEe--------EeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCC
Confidence 0 011111111100 01347999999998 778877766553 344432 11 1112221111
Q ss_pred CccEEEEEEc-CCCCEEEEeeCCCcEEEeecCc
Q 013873 314 MQRVFCVKFS-CDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 314 ~~~v~~~~~s-~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
.+.-..++.+ .+|.++++--..+.|..|+...
T Consensus 274 ~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 274 YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1334456775 5787777777888999999875
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.80 E-value=20 Score=32.50 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=35.2
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCc---eeEEee---------ccCCCeeEEEEcCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYS---------GHQGAVRGLTVSTD 120 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~---------~h~~~v~~i~~~~~ 120 (434)
..-..|+|.|+|...|+.+...|.|++++..... .+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999983246666778999999754321 122221 11356789999996
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=85.25 E-value=5.4 Score=37.04 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=45.2
Q ss_pred cCeEEEEEccCCCEEEEEeC------------CCcEEEEeCCCCeeeeEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 272 SAVMDIDYSPTGREFVTGSY------------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 272 ~~i~~~~~sp~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
.....|.|.++|.+.++... .+.|..++..+++....+.......++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773321 225777787778776666544446799999999999887754
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.06 E-value=25 Score=35.45 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCC
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (434)
.+.++...++..++++-+.|+++|+|++.++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4566777777788889999999999998877543
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.83 E-value=22 Score=31.28 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCC-CceEEeeeCCCcEEEEeCCCCceeEEeec-------------------cCCCeeEEEEcCC-CCeEE
Q 013873 67 DGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSG-------------------HQGAVRGLTVSTD-GRILV 125 (434)
Q Consensus 67 ~~V~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------------------h~~~v~~i~~~~~-~~~l~ 125 (434)
..|.++++.|.. +..|..++..+.|...+ +.++.-..+.. ....+.+|.+.|. ...|+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 468889998732 35667666666665554 22322222211 1235788999873 34555
Q ss_pred EeeCCCcEEE
Q 013873 126 SCGTDCTVKL 135 (434)
Q Consensus 126 s~~~dg~v~i 135 (434)
.+..++.|..
T Consensus 194 vg~~~ggl~~ 203 (394)
T 3b7f_A 194 IGMSSGGVFE 203 (394)
T ss_dssp EEEETBEEEE
T ss_pred EEECCCCEEE
Confidence 5554444443
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.15 E-value=33 Score=30.19 Aligned_cols=252 Identities=10% Similarity=0.110 Sum_probs=120.8
Q ss_pred ceEEeeeCCCcEEEEeCCCCc-----------eeEEeec-cCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRR-----------TVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (434)
...+.-..||.|+.|-..... ....+.. ....+..++++......+....||.|..|-.........-
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 344555678899999643211 1111111 1234555677766667777788999999965432211110
Q ss_pred CCCCCCCCceeEEEe-cCceEEEeeccCCCEEEEeCCeEEEEeCCCCcce-----------eee-ecCCCceEEEEEcCC
Q 013873 148 DSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-----------NSF-QWGTDTVISVRFNPA 214 (434)
Q Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~~~-~~~~~~i~~i~~~~~ 214 (434)
... ....+...... ...+..++......++++.++.|+.|-....-.+ ..+ ......|..++....
T Consensus 143 ~~~-~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 143 NRS-PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCc-cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 000 00000000000 1145556655555566677788888875431110 001 111234666665432
Q ss_pred CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCc
Q 013873 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294 (434)
Q Consensus 215 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 294 (434)
. ...++-..||.|..|-.........- ..... ..+..+.......|..++... ...+.-..||.
T Consensus 222 ~-~~t~~l~~~G~v~~wG~n~~GqLG~g----~~~~~---------~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~ 285 (389)
T 3kci_A 222 D-AQTLCLTDDDTVWSWGDGDYGKLGRG----GSDGC---------KVPMKIDSLTGLGVVKVECGS--QFSVALTKSGA 285 (389)
T ss_dssp S-CEEEEEETTTEEEEEECCGGGTTSSS----SCCCE---------EEEEECGGGTTSCEEEEEEET--TEEEEEETTSC
T ss_pred C-cEEEEEccCCEEEEEeCCCCCCCCCC----CCCCc---------cccEEecccCCCcEEEEeCCC--CEEEEEeCCCe
Confidence 2 34555677899999975533221100 00000 000000001122355555432 34444567889
Q ss_pred EEEEeCCCC----------ee-eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccc
Q 013873 295 IRIFQYNGG----------RS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350 (434)
Q Consensus 295 i~iwd~~~~----------~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 350 (434)
|+.|-.... .. ...+.......|..++... ...++-..||.|+.|-....-++.
T Consensus 286 v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~~GqLG 350 (389)
T 3kci_A 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDNDEGQLG 350 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCTTSTTC
T ss_pred EEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCCCCcCC
Confidence 999965321 11 1111111123466665543 344455789999999887655443
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.34 E-value=35 Score=29.98 Aligned_cols=215 Identities=10% Similarity=0.091 Sum_probs=110.1
Q ss_pred CCCCeEEEEeCCCCCceEE--eeeC-------------CCcEEEEeCCCC--ceeEEeecc------CCCeeEEEEc---
Q 013873 65 HRDGISCMAKNPNYLKGFF--SGSM-------------DGDIRLWDIANR--RTVCQYSGH------QGAVRGLTVS--- 118 (434)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~--sg~~-------------dg~i~iwd~~~~--~~~~~~~~h------~~~v~~i~~~--- 118 (434)
+--.|..+...+.+ .+-+ +|-. --.|.+||+.+. +.++.+.-. ...+..+.+.
T Consensus 85 ~lvsV~~v~iD~~~-rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 85 ELTSIYQPVIDDCR-RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp SSSCEEEEEECTTC-EEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred ceEEeeEEEEcCCC-cEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence 34478888888776 3322 2311 125889999999 888876532 3457778777
Q ss_pred CC----CCeEEEee-CCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCC
Q 013873 119 TD----GRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS 193 (434)
Q Consensus 119 ~~----~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 193 (434)
++ +.+++.+. ..+-|.++|+.+++. .... +. .+.|+......-.|.-.-|
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~s-------------wRv~-~~------~~~pd~~~~~~i~G~~~~~----- 218 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDS-------------WNVT-HP------TFKAERPTKFDYGGKEYEF----- 218 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEE-------------EEEE-CG------GGSCCSCEEEEETTEEEEE-----
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcE-------------EEEc-cC------CCccccCcceEECCEEeEe-----
Confidence 22 23333333 356788888876632 1111 11 1233311122222221111
Q ss_pred cceeeeecCCCceEEEEEcCC----CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee--
Q 013873 194 QPINSFQWGTDTVISVRFNPA----EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH-- 267 (434)
Q Consensus 194 ~~~~~~~~~~~~i~~i~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 267 (434)
...+..|+++|+ + ..|.-....+ -++|.+.+...... ........+
T Consensus 219 ---------~~Gi~gIaLsp~~~~~~-~~LYf~plss-~~ly~V~T~~L~~~-----------------~~~~~v~~~G~ 270 (381)
T 3q6k_A 219 ---------KAGIFGITLGDRDSEGN-RPAYYLAGSA-IKVYSVNTKELKQK-----------------GGKLNPELLGN 270 (381)
T ss_dssp ---------CCCEEEEEECCCCTTSC-CEEEEEESSC-SEEEEEEHHHHSST-----------------TCCCCCEEEEE
T ss_pred ---------ccCceEEEecCCcCCCC-eEEEEEECCC-CcEEEEEHHHhhCc-----------------chhhceEEeee
Confidence 345888999987 4 3333333332 13343322100000 000000111
Q ss_pred eCcccCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCC-C----eeeeEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 268 MGHESAVMDIDYS-PTGREFVTGSYDRTIRIFQYNG-G----RSREIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 268 ~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~-~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
.+....-..+++. .+|.++++--..+.|..|+..+ . .............+..+.+.++|.+.+..+
T Consensus 271 kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 271 RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 1111234456775 5787777777888999999876 2 222222333445678888877777555543
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.70 E-value=39 Score=29.71 Aligned_cols=207 Identities=10% Similarity=0.021 Sum_probs=91.7
Q ss_pred CeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEE-e----cCceEEEeeccCCCEEEEeCCeEEEEeCCCCcce
Q 013873 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-W----KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI 196 (434)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 196 (434)
..++.-..||.|..|=.+....+.... ........ . ...+..++......++++.++.|..|-.+..-.+
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~-----~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqL 85 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIE-----GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRL 85 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCS-----CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTT
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCc-----CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 455566778888888654432221100 01111110 0 1133444444444455666778888865432110
Q ss_pred -----------eeeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccce
Q 013873 197 -----------NSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264 (434)
Q Consensus 197 -----------~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
..+.. ....+..++++... ...+.-..||.|..|-.........- ... ....+.
T Consensus 86 G~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~-~h~~al~~~G~v~~wG~n~~GqLG~g----~~~---------~~~~p~ 151 (389)
T 3kci_A 86 GIGGTESVSTPTLLESIQHVFIKKVAVNSGG-KHCLALSSEGEVYSWGEAEDGKLGHG----NRS---------PCDRPR 151 (389)
T ss_dssp SSSSSCCEEEEEECGGGTTSCEEEEEECTTC-SEEEEEETTSCEEEEECCGGGTTCSS----SCC---------CEEEEE
T ss_pred CCCCcCCccCCEEcccccCCceeEEEECcCC-CeEEEEcCCCCEEEEeCCCCCcCCCC----CCc---------cCcCCe
Confidence 11111 12234445665544 55556678999999976543221100 000 000000
Q ss_pred eeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----------ee-eeEEeccCCccEEEEEEcCCCCEEEEee
Q 013873 265 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG----------RS-REIYHTKRMQRVFCVKFSCDASYVISGS 333 (434)
Q Consensus 265 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----------~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 333 (434)
.+.......|..++.. ....+.-..||.|+.|-.... .. ...........|..++......+.++-.
T Consensus 152 ~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~ 229 (389)
T 3kci_A 152 VIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT 229 (389)
T ss_dssp ECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE
T ss_pred EecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc
Confidence 0100112246666553 345555667899999965321 11 1111112224566776654335566667
Q ss_pred CCCcEEEeecCccccc
Q 013873 334 DDTNLRLWKAKASEQL 349 (434)
Q Consensus 334 ~dg~v~vw~~~~~~~~ 349 (434)
.||.|+.|-....-++
T Consensus 230 ~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 230 DDDTVWSWGDGDYGKL 245 (389)
T ss_dssp TTTEEEEEECCGGGTT
T ss_pred cCCEEEEEeCCCCCCC
Confidence 8999999976654443
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.67 E-value=12 Score=38.59 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=30.8
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEE
Q 013873 273 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 309 (434)
Q Consensus 273 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 309 (434)
.+.+++..++..++++-+.|+++++|++.++.++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556667778899999999999999999998876654
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.17 E-value=12 Score=38.57 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecCcccccccC
Q 013873 316 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 352 (434)
Q Consensus 316 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 352 (434)
.+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455667778899999999999999999999987664
No 365
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=59.60 E-value=93 Score=27.44 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=122.5
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCce---------e--EEeec-cCCCeeEEEEcCCCCeEEEeeCCCcEE
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---------V--CQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVK 134 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---------~--~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~v~ 134 (434)
..|..++..... .++....++.|+.|-...... . ..+.. ....|..|+.- ....+....||.|.
T Consensus 68 ~~i~~va~G~~h--t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCGADH--TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEECSSE--EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEeCcce--EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 367777776542 233333345899996432110 0 11111 12256666553 34566667899999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCceeEEEe----cCceEEEeeccCCCEEEEeCCeEEEEeCCCCcce-----------eee
Q 013873 135 LWNVPVATLTDSDDSTDNSSEPLAVYVW----KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-----------NSF 199 (434)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~~~ 199 (434)
.|-............ ......... ...+..++......++++.++.++.|-......+ ..+
T Consensus 144 ~wG~n~~GqLG~g~~----~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v 219 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDT----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 219 (406)
T ss_dssp EEECCTTSTTCSSSC----CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEEC
T ss_pred EeCCCCCccCCCCCC----CCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEe
Confidence 997554322111100 001111111 1245566666666666777788988875432111 001
Q ss_pred e-cCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 200 Q-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 200 ~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
. .....|..++... ...+.-..+|.|..|-.........- ..... ..+..+.......|..++
T Consensus 220 ~~~~~~~i~~va~G~---~ht~~l~~~G~v~~wG~n~~GqlG~g----~~~~~---------~~p~~v~~~~~~~v~~i~ 283 (406)
T 4d9s_A 220 TSTGGEKMSMVACGW---RHTISVSYSGALYTYGWSKYGQLGHG----DLEDH---------LIPHKLEALSNSFISQIS 283 (406)
T ss_dssp CCSTTCCEEEEEECS---SEEEEEETTCCEEEEECCTTSTTCSS----SCCCE---------EEEEECGGGTTSCEEEEE
T ss_pred cccCCceEEEEEECC---CcEEEEcCCCCEEEeeCCCCCCCCCC----CCcCc---------cccEEecccCCCCEEEEE
Confidence 1 1123455555443 34455567899999976543322100 00000 000000001123355555
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCe----------e-eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccc
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYNGGR----------S-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~~~~----------~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 347 (434)
.. ....+.-..||.|+.|-....- . ...........|..++.-. ...++-..||.|+.|=....-
T Consensus 284 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n~~G 359 (406)
T 4d9s_A 284 GG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRGTNG 359 (406)
T ss_dssp EC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECCTTS
T ss_pred ec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCCCCC
Confidence 43 3344555678888888654211 0 1111111223566666543 344445678999999876554
Q ss_pred ccc
Q 013873 348 QLG 350 (434)
Q Consensus 348 ~~~ 350 (434)
++.
T Consensus 360 qLG 362 (406)
T 4d9s_A 360 QLG 362 (406)
T ss_dssp TTC
T ss_pred ccC
Confidence 443
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.27 E-value=53 Score=30.65 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCeEEEEeCCCCCceEE-eeeC-----------CCcEEEEeCCCCceeEEeecc-CCCeeEEEEcCCCCeEEEee
Q 013873 67 DGISCMAKNPNYLKGFF-SGSM-----------DGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCG 128 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~-sg~~-----------dg~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~ 128 (434)
+....|.|.++| .+.+ +=.. .+.|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 567889999998 6655 3211 225777777777766555543 35689999999999887763
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=57.54 E-value=1.5e+02 Score=29.11 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc-------CCCeeEEEEcCC-CCeEEEee
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-------QGAVRGLTVSTD-GRILVSCG 128 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~i~~~~~-~~~l~s~~ 128 (434)
...|.+|+++|..+..+++++..|.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999998667788888888777665 334333333221 246999999884 33444443
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.58 E-value=44 Score=31.37 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=40.4
Q ss_pred CeEEEEeCCCCCceEEeeeCC------------CcEEEEeCCCCceeEEeecc-CCCeeEEEEcCCCCeEEEe
Q 013873 68 GISCMAKNPNYLKGFFSGSMD------------GDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSC 127 (434)
Q Consensus 68 ~V~~~~~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~ 127 (434)
..--|+|+|.| .+++.-..+ +.+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45668999998 655543221 23566677777766555544 4689999999999887765
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.37 E-value=19 Score=34.58 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeec
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG 107 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 107 (434)
..|.|+.+. . .++++-+.|.++|+||+.+++++.+..-
T Consensus 222 ~~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--E-RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--T-TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--C-cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 457776664 3 7899999999999999999998877653
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=55.32 E-value=1.1e+02 Score=26.78 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=28.2
Q ss_pred ceEEeeeCCCcEEEEeCCC-CceeEEe--eccCCCeeEEEEcC-CCCeEEEeeCCC
Q 013873 80 KGFFSGSMDGDIRLWDIAN-RRTVCQY--SGHQGAVRGLTVST-DGRILVSCGTDC 131 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~-~~~~~~~--~~h~~~v~~i~~~~-~~~~l~s~~~dg 131 (434)
..|..|+..| +.+++... +..-..+ ......|.+|++.| +...|..++..|
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 5677888777 55555432 2222211 12345799999998 334455555554
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=54.17 E-value=93 Score=25.76 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=111.0
Q ss_pred ccccccCCC---CCeEEEEeCCCCCceEEeeeCCCcEEEE---eCCCCceeEEeeccCCCeeEEEEcC-CCCeEEEeeCC
Q 013873 58 FIGALDGHR---DGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTD 130 (434)
Q Consensus 58 ~~~~l~~h~---~~V~~~~~~~~~~~~l~sg~~dg~i~iw---d~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d 130 (434)
.++...||. +.+..+...... ..|+.-+.+|.++-- ++..+.....+. ....|.++.... +..+++.++.+
T Consensus 12 wir~~~g~~~~gD~~~~~~~~~t~-~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 12 SIIPVEELPLEKAPVVNILRVPFT-EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp EEEEGGGCCSSCCCEEEEEEEETT-SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETT
T ss_pred eeeeccCCCCCCCeEEEEEEECCC-CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCC
Confidence 344455553 455555544444 556666667776543 332221111132 345566554321 45688888889
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEE
Q 013873 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR 210 (434)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 210 (434)
|.++-..+..-. .. ..+.....+.. .+.+..+.
T Consensus 90 G~iKr~~l~~~~-~~---------------------------------------------~~G~~~i~lke-gD~l~~~~ 122 (276)
T 3no0_A 90 GYVKKIPLAEFE-YK---------------------------------------------AQGMPIIKLTE-GDEVVSIA 122 (276)
T ss_dssp SEEEEEEGGGTT-TC---------------------------------------------STTEECSCCCT-TCCEEEEE
T ss_pred CEEEEEEHHHhh-hh---------------------------------------------cCCeEEEecCC-CCEEEEEE
Confidence 998888765432 10 00111112222 23344444
Q ss_pred EcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEe
Q 013873 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 290 (434)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 290 (434)
..... ..++..+..|.+..+....-..... ....+...+ + .....|..+...+++..++..+
T Consensus 123 ~~~~~-~~ill~T~~G~~~r~~~~eip~~gR------~a~Gv~~i~----------L-~~~d~vv~~~~~~~~~~ll~~T 184 (276)
T 3no0_A 123 SSVDE-THILLFTKKGRVARFSVREVPPSTP------GARGVQGIK----------L-EKNDETSGLRIWNGEPYLLVIT 184 (276)
T ss_dssp ECCSS-CEEEEEETTSEEEEEEGGGSCBCCT------TCCCEECCC----------C-CTTCCEEEEEEESSCSEEEEEE
T ss_pred EeCCC-CEEEEEECCCEEEEEEhhhCCCcCC------CCCCEEEEc----------c-CCCCEEEEEEEeCCCCEEEEEe
Confidence 44333 4566778888888887654322110 000000000 1 1234555555555667888999
Q ss_pred CCCcEEEEeCCC-------CeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE--eecCc
Q 013873 291 YDRTIRIFQYNG-------GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL--WKAKA 345 (434)
Q Consensus 291 ~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v--w~~~~ 345 (434)
..|.++...+.. ++-...+ ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 185 ~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 185 AKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp TTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999998887642 1122222 22244555444333445666777888877 77654
No 372
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=53.10 E-value=1.2e+02 Score=26.80 Aligned_cols=229 Identities=10% Similarity=0.037 Sum_probs=114.3
Q ss_pred CeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCC-CCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEe
Q 013873 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD-NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (434)
Q Consensus 111 ~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (434)
.|..|+. .+...+....||.|..|=.............. ....+... .....+..++......++++.+|.|+.|-
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G~~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAGDSHSACLLEDGRVFAWG 152 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcCcCeEEEEeCCCeEEEEe
Confidence 4655554 34566667889999999765432221111110 00111111 12345666666666667777778888887
Q ss_pred C--CCCcce----------eeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcc------------------
Q 013873 190 H--NRSQPI----------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA------------------ 239 (434)
Q Consensus 190 ~--~~~~~~----------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------ 239 (434)
. +..-.+ .........|..|+... ...++-..||.|..|-......+
T Consensus 153 ~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp CEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred CCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 5 321111 11111234566666543 44555678899999964322100
Q ss_pred ----eEE---------E---------eeecCceeEEEeeCCCCcccee----------eeeCcccCeEEEEEccCCCEEE
Q 013873 240 ----RKV---------I---------MRANEDCNCYSYDSRKLDEAKC----------VHMGHESAVMDIDYSPTGREFV 287 (434)
Q Consensus 240 ----~~~---------~---------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~~~sp~~~~l~ 287 (434)
..+ . .....++.++.|-.+...++-. ........|..++.. ....+
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~ 307 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTV 307 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEE
T ss_pred ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEE
Confidence 000 0 0014566777776543321110 000012345555543 34455
Q ss_pred EEeCCCcEEEEeCCCC---------e--eeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCccccc
Q 013873 288 TGSYDRTIRIFQYNGG---------R--SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 349 (434)
Q Consensus 288 ~~~~d~~i~iwd~~~~---------~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 349 (434)
.-..||.|+.|-.... . ............|..|+.... ..++-..||.|+.|-....-++
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCTTSCS
T ss_pred EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCCCCCC
Confidence 5567899999965321 0 111111111125666666543 3333468999999987665444
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.20 E-value=1.3e+02 Score=26.24 Aligned_cols=208 Identities=7% Similarity=0.006 Sum_probs=0.0
Q ss_pred EEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEEeeccCCCEEEEeC-Ce---EEEEeC
Q 013873 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQ---VDIWNH 190 (434)
Q Consensus 115 i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---i~i~d~ 190 (434)
+.+-|+..++++.+.+|.|+--.+......... ..............-+..+..+....+++..+ |. +.+|++
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~---g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ei 77 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRG---GRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQL 77 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCC---CCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccC---CCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHC
Q ss_pred CCC---------cceeeeecCCCceEEEEEcC-CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCC
Q 013873 191 NRS---------QPINSFQWGTDTVISVRFNP-AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKL 260 (434)
Q Consensus 191 ~~~---------~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
... ..+..+.....-+..+.+.. ....+|+.++..|.++...+.........
T Consensus 78 p~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~------------------ 139 (370)
T 3l6v_A 78 PEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLAR------------------ 139 (370)
T ss_dssp CBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTT------------------
T ss_pred cCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCC------------------
Q ss_pred ccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-------CCeeeeEEeccCCccEEEEEEcC---------
Q 013873 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-------GGRSREIYHTKRMQRVFCVKFSC--------- 324 (434)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~s~--------- 324 (434)
............+..+........++..+.+|.+..|+.. ...-...+.......|.++...+
T Consensus 140 -G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~ 218 (370)
T 3l6v_A 140 -GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEV 218 (370)
T ss_dssp -CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------
T ss_pred -ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccc
Q ss_pred --------------------------CCCEEEEeeCCCcEEEeecC
Q 013873 325 --------------------------DASYVISGSDDTNLRLWKAK 344 (434)
Q Consensus 325 --------------------------~~~~l~s~~~dg~v~vw~~~ 344 (434)
++..|++.+..|..+...+.
T Consensus 219 ~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 219 EDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ----------------------------CEEEEEETTSEEEEEEGG
T ss_pred ccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.74 E-value=37 Score=32.64 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=29.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeeeEEec
Q 013873 273 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT 311 (434)
Q Consensus 273 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 311 (434)
.|.++.+ +..++++-+.|.++|+||+.++.+.....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 478999999999999999999987766533
No 375
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=44.61 E-value=61 Score=30.06 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=43.8
Q ss_pred CeEEEEEccCCC--EEEEEeCCCcEEEEeCCCC----eeeeEEeccC-CccEE-EEEEcCCCCEEEEeeCCCcEEE
Q 013873 273 AVMDIDYSPTGR--EFVTGSYDRTIRIFQYNGG----RSREIYHTKR-MQRVF-CVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 273 ~i~~~~~sp~~~--~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~-~~~v~-~~~~s~~~~~l~s~~~dg~v~v 340 (434)
..++|+....+. .++.|+.+|.|.-..+... .....+.... ..+|. .+.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 466676665444 4788899998765555422 1222222221 35775 8999999999999988765555
No 376
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.76 E-value=1.6e+02 Score=25.13 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCC--CCc---------eeEEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEE
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRR---------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~---------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~i 135 (434)
+.+..+...... ..|+..+..|.+..+... .-. ....+. ....|.++...+++.+|+.++..|.++.
T Consensus 146 D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 146 DELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp CCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred CEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 344444444444 567778888998888776 211 111222 3456777776666678999999999998
Q ss_pred eeCCCC
Q 013873 136 WNVPVA 141 (434)
Q Consensus 136 wd~~~~ 141 (434)
-.+..-
T Consensus 224 t~l~e~ 229 (327)
T 3uc1_A 224 TAIEEY 229 (327)
T ss_dssp EEGGGS
T ss_pred EEHHHc
Confidence 876543
No 377
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=42.76 E-value=80 Score=21.75 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=16.1
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 318 FCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 318 ~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
..+.+..+|.+++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3566777888776543 4443 787655
No 378
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=41.78 E-value=1.5e+02 Score=27.12 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=43.2
Q ss_pred CeEEEEEcc----CCC--EEEEEeCCCcEEEEeCC-CCe-------eeeEEec-cCCccEEEEEEcCCCCEEEEeeCCCc
Q 013873 273 AVMDIDYSP----TGR--EFVTGSYDRTIRIFQYN-GGR-------SREIYHT-KRMQRVFCVKFSCDASYVISGSDDTN 337 (434)
Q Consensus 273 ~i~~~~~sp----~~~--~l~~~~~d~~i~iwd~~-~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~ 337 (434)
..++|+... ++. .++.|+.+|.|.-.-+. .+. .+..+.. ....+|..|.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 457766643 244 47789999986544332 211 1222222 12368899999999999999998876
Q ss_pred EEE
Q 013873 338 LRL 340 (434)
Q Consensus 338 v~v 340 (434)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.47 E-value=1.6e+02 Score=24.83 Aligned_cols=200 Identities=8% Similarity=0.003 Sum_probs=98.5
Q ss_pred ceEEeeeCCCcEEEEeCCCCcee---------EEeeccCCCeeEEEEcCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC
Q 013873 80 KGFFSGSMDGDIRLWDIANRRTV---------CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~~~~~---------~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (434)
.++++.+.+|.|+--.+...... ..+.. .+.+..+........++..+..|.++-+....-....... .
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~-~ 86 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS-K 86 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC-C
Confidence 67888999999998866433211 11222 2345455555555677778889987666543211100000 0
Q ss_pred CCC-CCceeEEEecCceEEEeec----cCC-CEEEEeCCeEEEEeCC-------CCcceeeeecCCCceEEEEEcCCCCc
Q 013873 151 DNS-SEPLAVYVWKNSFWAVDHQ----WEG-DLFATAGAQVDIWNHN-------RSQPINSFQWGTDTVISVRFNPAEPN 217 (434)
Q Consensus 151 ~~~-~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~ 217 (434)
... ...+. ......+..+... .+. .++++..|.++...+. .+.....+.. .+.+..+.....+ .
T Consensus 87 G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~-~ 163 (312)
T 1suu_A 87 GQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD-E 163 (312)
T ss_dssp -CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT-C
T ss_pred CcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC-C
Confidence 000 00000 1111222222211 122 3445555666655542 2223333443 3455555554433 4
Q ss_pred EEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEE
Q 013873 218 VLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 297 (434)
Q Consensus 218 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 297 (434)
.++..+.+|.+..+....-...... ...+... .+ .....|.++..-+++..+++.+..|..+.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~------~~Gv~~i----------~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRG------TQGVCGM----------KL-KEGDLFVKVLSVKENPYLLIVSENGYGKR 226 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTT------BCCEECC----------CC-CTTCCEEEEEECTTCSEEEEEETTSEEEE
T ss_pred EEEEEeCCCcEEEEEHHHccccCCC------CCCeEeE----------Ee-CCCCEEEEEEEECCCCeEEEEECCCceEE
Confidence 5777888999988887652221110 0000000 01 12345556655555667888888999998
Q ss_pred EeCC
Q 013873 298 FQYN 301 (434)
Q Consensus 298 wd~~ 301 (434)
.++.
T Consensus 227 ~~~~ 230 (312)
T 1suu_A 227 LNMS 230 (312)
T ss_dssp EEGG
T ss_pred EEHH
Confidence 8874
No 380
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.36 E-value=2.5e+02 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCCceeEEeecc-------CCCeeEEEEcC-CCCeEEEe
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-------QGAVRGLTVST-DGRILVSC 127 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~i~~~~-~~~~l~s~ 127 (434)
+.|..|+++|..+..++++...|.|..++ +.++.-..+..+ ...|.+|+++| +...++.+
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~ 90 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIV 90 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEE
Confidence 38999999998667788887777777765 233332223221 24689999998 33444444
No 381
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.55 E-value=1.6e+02 Score=24.69 Aligned_cols=208 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCC------CCCCCceeEEEecCceEEEeeccCCCEEEEeCCeEEEEeC-C
Q 013873 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDST------DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH-N 191 (434)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~ 191 (434)
|+..++++.+.+|.|+--.+............ ...............-..+.++..|..+-....++..... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Q ss_pred CCccee---eeecCCCceEEEEEcC-CCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeee
Q 013873 192 RSQPIN---SFQWGTDTVISVRFNP-AEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267 (434)
Q Consensus 192 ~~~~~~---~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (434)
.|.++. .+.....-+..+.... ....+++..+..|.++-..+....... ..+.....+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~------------------r~G~~~i~l 142 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR------------------TAGKVAIKL 142 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC------------------TTCEESSCC
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc------------------cCCeEEEEE
Q ss_pred eCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCC-------CCeeeeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEE
Q 013873 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-------GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 340 (434)
Q Consensus 268 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~v 340 (434)
..+ ..+..+....+...++..+.+|.+..++.. ...-...+.......|.++...+++..|++.+..|.++-
T Consensus 143 ~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 221 (307)
T 1zi0_A 143 VDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 221 (307)
T ss_dssp CTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEE
T ss_pred CCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEE
Q ss_pred eecCc
Q 013873 341 WKAKA 345 (434)
Q Consensus 341 w~~~~ 345 (434)
.++..
T Consensus 222 ~~~~e 226 (307)
T 1zi0_A 222 TAVAE 226 (307)
T ss_dssp ECGGG
T ss_pred EEHHH
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.74 E-value=1.8e+02 Score=24.45 Aligned_cols=205 Identities=9% Similarity=-0.000 Sum_probs=100.7
Q ss_pred cCCCCeEEEeeCCCcEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEE-Eeecc-CCCEEEEeCCeEEEEe---CCC
Q 013873 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWA-VDHQW-EGDLFATAGAQVDIWN---HNR 192 (434)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~i~d---~~~ 192 (434)
.++..++++.+.+|.|+--.+........... ...... ......+.. +..+. +.-++++..|.++-+. +..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~---g~~~~~-lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGK---GLSSFD-LNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 80 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCC---CEECCC-CCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCC---Cceecc-cCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCC
Confidence 34667888999999999887644322111000 000000 001111111 12222 2234445556644443 322
Q ss_pred ------Ccc---eeeeecCCCceEEEEEcCC--CCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCc
Q 013873 193 ------SQP---INSFQWGTDTVISVRFNPA--EPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLD 261 (434)
Q Consensus 193 ------~~~---~~~~~~~~~~i~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
|.+ ...+.. ...|.++...++ ....++..+..|.++...+......+.. + +...
T Consensus 81 ~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~-------G-~~~i------ 145 (312)
T 1suu_A 81 SSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSR-------G-VIVI------ 145 (312)
T ss_dssp -------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------C-EECB------
T ss_pred CCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCC-------c-EEEE------
Confidence 121 112232 234555543321 2356777899999998887654322100 0 0001
Q ss_pred cceeeeeCcccCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----e---eeeEEeccCCccEEEEEEcCCCCEEEEeeC
Q 013873 262 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG----R---SREIYHTKRMQRVFCVKFSCDASYVISGSD 334 (434)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 334 (434)
.+.. ...+..+.....+..++..+.+|.+..+....- + -...+.......|.++....++..|++.+.
T Consensus 146 ----~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~ 220 (312)
T 1suu_A 146 ----KLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSE 220 (312)
T ss_dssp ----CCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEET
T ss_pred ----ecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEEC
Confidence 1112 345555555545567888888999988876531 1 111111122345666666556667888888
Q ss_pred CCcEEEeecCcc
Q 013873 335 DTNLRLWKAKAS 346 (434)
Q Consensus 335 dg~v~vw~~~~~ 346 (434)
.|..+..++..-
T Consensus 221 ~G~~kr~~~~e~ 232 (312)
T 1suu_A 221 NGYGKRLNMSKI 232 (312)
T ss_dssp TSEEEEEEGGGS
T ss_pred CCceEEEEHHHh
Confidence 999888887543
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.91 E-value=2.3e+02 Score=24.11 Aligned_cols=209 Identities=9% Similarity=-0.013 Sum_probs=100.7
Q ss_pred CCeEEEEeCCCCCceEEeeeCCCcEEEE---eCCCC------ceeE---EeeccCCCeeEEEEcC---CCCeEEEeeCCC
Q 013873 67 DGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANR------RTVC---QYSGHQGAVRGLTVST---DGRILVSCGTDC 131 (434)
Q Consensus 67 ~~V~~~~~~~~~~~~l~sg~~dg~i~iw---d~~~~------~~~~---~~~~h~~~v~~i~~~~---~~~~l~s~~~dg 131 (434)
+.+..+...... ..|+.-+..|.++-. ++... .++. .+. ....|.++...+ +..+++.++.+|
T Consensus 42 D~~~~~~~~~t~-d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 42 DIVAHFFVCSTH-DLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CEEEEEEEeCCC-CEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 445444444443 556655667765544 44322 2211 122 234555554333 467999999999
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCceeEEEecCceEEE-eeccCC-CEEEEeCCeEEEEeCC--CC---------cceee
Q 013873 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV-DHQWEG-DLFATAGAQVDIWNHN--RS---------QPINS 198 (434)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~i~d~~--~~---------~~~~~ 198 (434)
.++--.+.......... ...+.. .....+..+ ....+. -++++..|.+..+... .- .....
T Consensus 120 ~iKr~~l~~~~~~~r~G-----~~~i~l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGG-----IVAVNL-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp EEEEEEGGGGCCCCSSC-----EESCBC-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred EEEEeEHHHhhccccCc-----eEEEEE-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 99998875433221100 000111 111222222 222222 3445555776666555 21 11122
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEEEE
Q 013873 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 278 (434)
Q Consensus 199 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 278 (434)
+.. ...|.++...+.+ ..++..+..|.++.-.+.......+- ...+... .+....+.+..+.
T Consensus 194 L~~-~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~------~~G~~~~----------~l~~~~d~lv~~~ 255 (327)
T 3uc1_A 194 FNI-DDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRG------GKGVLTV----------MYDRRRGRLVGAL 255 (327)
T ss_dssp CCT-TCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTT------SCCEESS----------CCCTTTCSEEEEE
T ss_pred CCC-CCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcC------CCcEEEE----------EecCCCCeEEEEE
Confidence 222 4456666666544 56778889999988876544322110 0000000 0011123344444
Q ss_pred EccCCCEEEEEeCCCcEEEEeCC
Q 013873 279 YSPTGREFVTGSYDRTIRIFQYN 301 (434)
Q Consensus 279 ~sp~~~~l~~~~~d~~i~iwd~~ 301 (434)
...+...++..+.+|.+.-++..
T Consensus 256 ~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 256 IVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EECTTCEEEEEEGGGCEEEEEGG
T ss_pred EeCCCccEEEEcCCCeEEEEehh
Confidence 43444566667778887777654
No 384
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=28.68 E-value=1.8e+02 Score=26.83 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=44.1
Q ss_pred CeEEEEEccC-C-CEEEEEeCCCcEEEEeCC-CC--eeeeEEeccCCccE-EEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 273 AVMDIDYSPT-G-REFVTGSYDRTIRIFQYN-GG--RSREIYHTKRMQRV-FCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 273 ~i~~~~~sp~-~-~~l~~~~~d~~i~iwd~~-~~--~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
..+.|+...- | ..++.|+.+|.|.-.-+. .+ .....+......+| ..+.++++..+|++++.++.++|-
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 4666666542 2 346778889987654443 21 22333333334677 489999999999999888777663
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=28.46 E-value=1.8e+02 Score=26.58 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=43.6
Q ss_pred CeEEEEeCCC----C-CceEEeeeCCCcEEEEeCC-CCc-------eeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCc
Q 013873 68 GISCMAKNPN----Y-LKGFFSGSMDGDIRLWDIA-NRR-------TVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCT 132 (434)
Q Consensus 68 ~V~~~~~~~~----~-~~~l~sg~~dg~i~iwd~~-~~~-------~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~ 132 (434)
..++|+...- + -..++.|+.+|.|.-.-+. .+. .+..+. ....+|..+.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4677665432 2 1567889999987544332 211 222332 24578999999999999999998876
Q ss_pred EEE
Q 013873 133 VKL 135 (434)
Q Consensus 133 v~i 135 (434)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=27.57 E-value=3.1e+02 Score=23.98 Aligned_cols=255 Identities=10% Similarity=0.023 Sum_probs=120.1
Q ss_pred CCCeEEEEeCCCCCceEEeeeCCCcEEEEeCCCC-c----------eeEEeec-cCCCeeEEEEcCCCCeEEEeeCC-Cc
Q 013873 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-R----------TVCQYSG-HQGAVRGLTVSTDGRILVSCGTD-CT 132 (434)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d-g~ 132 (434)
...|..++.... ..+.-..||.|+.|=.... + ....+.. ....|..++.-. .+.+....| +.
T Consensus 15 ~~~v~~ia~G~~---hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~ 89 (406)
T 4d9s_A 15 PRKVLIISAGAS---HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGME 89 (406)
T ss_dssp CCCEEEEEECSS---EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTE
T ss_pred ccceEEEecCCC---eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCE
Confidence 346777776553 3445556889999964431 1 0111111 123566665543 233333445 48
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCceeEEEe----cCceEEEeeccCCCEEEEeCCeEEEEeCCCCcce-----------e
Q 013873 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVW----KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-----------N 197 (434)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~ 197 (434)
|..|=.........-. .......... ...+..++......++++.++.|+.|-.+..-.+ .
T Consensus 90 v~~wG~n~~GqLG~g~----~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 165 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGN----SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQ 165 (406)
T ss_dssp EEEEECCGGGTTCSSS----CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred EEEEcCCCCcCCCCCC----CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccce
Confidence 9999653321111100 0011111111 1245666666555566677788999975542111 0
Q ss_pred eeec-CCCceEEEEEcCCCCcEEEEEecCCcEEEEEccCCCcceEEEeeecCceeEEEeeCCCCccceeeeeCcccCeEE
Q 013873 198 SFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 276 (434)
Q Consensus 198 ~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (434)
.+.. ....|..++... ...++-..+|.|..|-.........- ..... ..+..+.......|..
T Consensus 166 ~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g----~~~~~---------~~p~~v~~~~~~~i~~ 229 (406)
T 4d9s_A 166 KIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLG----DRTDR---------LVPERVTSTGGEKMSM 229 (406)
T ss_dssp ECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSS----SSCCE---------EEEEECCCSTTCCEEE
T ss_pred EecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCC----CCCCc---------CccEEecccCCceEEE
Confidence 1111 122466665543 44555678999999976543222100 00000 0000011111234555
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCe----------e-eeEEeccCCccEEEEEEcCCCCEEEEeeCCCcEEEeecCc
Q 013873 277 IDYSPTGREFVTGSYDRTIRIFQYNGGR----------S-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345 (434)
Q Consensus 277 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~----------~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 345 (434)
++.. ....+.-..||.|+.|-....- . ...+.......|..++-. ....++-..||.|+.|-...
T Consensus 230 va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 230 VACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp EEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred EEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCC
Confidence 5543 3344555678888888643211 1 111111112346555543 33444456789999997665
Q ss_pred cccc
Q 013873 346 SEQL 349 (434)
Q Consensus 346 ~~~~ 349 (434)
.-++
T Consensus 306 ~GqL 309 (406)
T 4d9s_A 306 FGQV 309 (406)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 4443
No 387
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.54 E-value=4.1e+02 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred eEEEEE----ccCCC--EEEEEeCCCcEE-EEeCCCCe-------eeeEE-eccCCccEEEEEEcCCCCEEEEeeCCCcE
Q 013873 274 VMDIDY----SPTGR--EFVTGSYDRTIR-IFQYNGGR-------SREIY-HTKRMQRVFCVKFSCDASYVISGSDDTNL 338 (434)
Q Consensus 274 i~~~~~----sp~~~--~l~~~~~d~~i~-iwd~~~~~-------~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 338 (434)
.+.|+. .++|+ .++.|+.+|.|. +.-...+. .+..+ ......+|..|.++++..+|++++.++.+
T Consensus 414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~ 493 (667)
T 4gz8_A 414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 493 (667)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence 455554 23454 477899999865 33222111 11111 11234678999999999999999988766
Q ss_pred EE
Q 013873 339 RL 340 (434)
Q Consensus 339 ~v 340 (434)
+|
T Consensus 494 kV 495 (667)
T 4gz8_A 494 QL 495 (667)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 388
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=25.29 E-value=1.6e+02 Score=19.87 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=29.1
Q ss_pred EEEeeccCCCEEEEeCCeEEEEeCCCCcceeeeecCCCceEEEEEcCCCCcEEEEEecCCcEEEEEcc
Q 013873 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 234 (434)
..+.+..|+.+++...+. .+|...+..+.. ....+.+..+| ++++. ..++. .+|...
T Consensus 21 y~l~~q~DgNLvly~~~~-~vW~ant~~~~~-------~~~~L~l~~dG-nLvL~-d~~~~-~vWss~ 77 (105)
T 4h3o_A 21 YHFIMQDDCNLVLYDHST-STWASNTEIGGK-------SGCSAVLQSDG-NFVVY-DSSGR-SLWASH 77 (105)
T ss_dssp EEEEECTTSCEEEEETTE-EEEECCCCCTTC-------CSCEEEECTTS-CEEEE-CTTCC-EEEECC
T ss_pred EEEEECCCCeEEEEECCE-EEEEecCCCCCC-------ccEEEEEeCCc-cEEEE-CCCcE-EEEEec
Confidence 455666777777665443 467766543311 11245666666 44443 22333 356543
No 389
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.09 E-value=2.6e+02 Score=26.26 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=38.5
Q ss_pred ceEEeeeCCCcEEEEeCCC-C----c-eeEEee--ccCCCeeEEEEcCCCCeEEEeeCCCcEEEe
Q 013873 80 KGFFSGSMDGDIRLWDIAN-R----R-TVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (434)
Q Consensus 80 ~~l~sg~~dg~i~iwd~~~-~----~-~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~v~iw 136 (434)
..++.|+.+|.|.-.-+.. + . .+..+. ....+|..+.++++...|+.++.++.+++-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 5678899999876443322 2 1 122232 245789999999998899998888766654
No 390
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.46 E-value=3e+02 Score=25.81 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=36.9
Q ss_pred EEEEEeCCCcEEEEeCCCCe----e--eeEEec-cCCccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 013873 285 EFVTGSYDRTIRIFQYNGGR----S--REIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLW 341 (434)
Q Consensus 285 ~l~~~~~d~~i~iwd~~~~~----~--~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~vw 341 (434)
.++.|+.+|.|.-.-+.... . +..+.. ....+|..+.++++...|++++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 57788899987644332211 1 111211 233678999999999999999888766653
Done!