Query 013874
Match_columns 434
No_of_seqs 163 out of 227
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 08:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-153 6E-158 1179.7 28.3 361 4-365 114-478 (478)
2 COG3114 CcmD Heme exporter pro 37.5 85 0.0019 26.0 5.0 42 168-209 9-59 (67)
3 PF09878 DUF2105: Predicted me 36.3 53 0.0012 32.4 4.4 47 147-198 158-207 (212)
4 PF15468 DUF4636: Domain of un 30.3 31 0.00067 34.5 1.7 39 138-181 25-63 (243)
5 TIGR01106 ATPase-IIC_X-K sodiu 29.6 1.7E+02 0.0036 34.5 7.7 43 220-262 809-853 (997)
6 PF13198 DUF4014: Protein of u 26.6 1.4E+02 0.0031 25.1 4.7 31 161-200 19-49 (72)
7 TIGR03777 RPE4 Rickettsial pal 26.3 28 0.00061 25.0 0.5 9 216-224 24-32 (32)
8 PF01956 DUF106: Integral memb 18.6 1E+02 0.0023 28.1 2.8 28 16-44 6-34 (168)
9 COG3462 Predicted membrane pro 17.7 96 0.0021 28.1 2.2 15 155-169 52-66 (117)
10 PRK00720 tatA twin arginine tr 13.1 3.2E+02 0.0068 23.3 4.0 31 179-209 8-39 (78)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.8e-153 Score=1179.72 Aligned_cols=361 Identities=62% Similarity=1.107 Sum_probs=346.5
Q ss_pred CCCCCCc-CCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhccCCcccCCCCCceeeeccc
Q 013874 4 KISFDSC-LQGSEPLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHET 82 (434)
Q Consensus 4 ~~~~~~C-~~GkvpliS~~~LHQLHIFIFvLAv~HV~ys~~Tm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qt 82 (434)
+.+.++| +||||||+|.|||||||||||||||+||+|||+||+||++|||+||+||+|+++.+++..+||+|++++||+
T Consensus 114 ~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt 193 (478)
T PF03094_consen 114 AEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQT 193 (478)
T ss_pred ccccCcccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeeccc
Confidence 3557799 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCcCcchhHHHHHHHhhhccCCchhhHHHHHhhHhhhhcCCCCCCcHHHHHHHHHhhccccccccchHHHHH
Q 013874 83 SFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTS 162 (434)
Q Consensus 83 sF~~~h~~~ws~~~~~~wi~cFfrQF~~SV~k~DYltLR~gFI~~H~~~~~kFdFhkYi~RsLEdDFk~VVGIS~~lW~~ 162 (434)
+|+|+|+++|++++++.|++|||||||+||+|+||+|||+|||++|++++++|||||||+||||||||+||||||+||++
T Consensus 194 ~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~ 273 (478)
T PF03094_consen 194 TFVRRHTSFWSKSPVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAF 273 (478)
T ss_pred HHHHhhcCCcccChhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCcchhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccCccceecCCcccccCcchHHHHHHHHHH
Q 013874 163 FVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFAL 242 (434)
Q Consensus 163 vviFLLlnv~Gw~~yfWlsfiPliliLlVGtKLq~IIt~lAlei~e~~~~v~G~p~V~psD~~FWF~rP~llL~LIHfiL 242 (434)
||+|||+|++|||+|||++|||++++|+||||||+||++||+||+|++++++|+|+|+|+|++|||+||+|||+||||+|
T Consensus 274 vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfil 353 (478)
T PF03094_consen 274 VVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFIL 353 (478)
T ss_pred hheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhhcCCceeeeccccceeeeeeeeeccccccccccchhHHHHHhhccccccccccHHHHHHHHHHHH
Q 013874 243 FQNAFQITYFFWIWYSFSLKSCFHANFTLAIMKVALGVGVLFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHM 322 (434)
Q Consensus 243 FQNAFelAfF~W~~~~fG~~SCf~~~~~~ii~Rl~~Gv~vQ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~ 322 (434)
||||||||||+|+||+||++||||++.+++++|+++||++|++|||+|||||||||||||+||++||+|+|+++|++||+
T Consensus 354 FqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~ 433 (478)
T PF03094_consen 354 FQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHK 433 (478)
T ss_pred HHhHHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCC---cccCCCCCCCCCCCccCCCCccccccccCCC
Q 013874 323 AVKKRKKRGKSS---TRTLGESVSPSPSTVYSSGGHTLHRFKTTGH 365 (434)
Q Consensus 323 ~akkk~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 365 (434)
+||||++++++. +.++.++++ ++|++++||+|+||+|+++++
T Consensus 434 ~ak~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~ll~~~~~~~~ 478 (478)
T PF03094_consen 434 KAKKKKKHKKSAHSGSTTPGSSRS-TTPSRGSSPVHLLHRFKTRSD 478 (478)
T ss_pred HHHHhhccCCCCCCCCCCCCCCCC-CCCCCCCCchhhhccCCCCCC
Confidence 999999877743 333333333 677899999999999998764
No 2
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=37.54 E-value=85 Score=26.00 Aligned_cols=42 Identities=21% Similarity=0.488 Sum_probs=25.4
Q ss_pred hhccCcchhhHh----hhhHHHHHHHHHHH-----hHHHHHHHHHHHHhhh
Q 013874 168 LLNVNGWHALFW----ASLIPLIIILAIGT-----ELQSILTKMALEISER 209 (434)
Q Consensus 168 Llnv~Gw~~yfW----lsfiPliliLlVGt-----KLq~IIt~lAlei~e~ 209 (434)
++|..|...|-| ++.+|++++++.-- -|+.|.-+.|-|..-+
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~~ 59 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARLR 59 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888 45677765554432 2455666666665433
No 3
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=36.26 E-value=53 Score=32.40 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=28.7
Q ss_pred hccccccccchHHHHHHHHHhhhccCcchhhHhhhhHHH---HHHHHHHHhHHHH
Q 013874 147 DDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWASLIPL---IIILAIGTELQSI 198 (434)
Q Consensus 147 dDFk~VVGIS~~lW~~vviFLLlnv~Gw~~yfWlsfiPl---iliLlVGtKLq~I 198 (434)
|-...+-||.|-+|++.-+..++ ..-+|+.++=+ -+++=||+|+-.|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 34566778889999766544444 24556554432 3566778777553
No 4
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=30.28 E-value=31 Score=34.48 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=27.6
Q ss_pred HHHHHHHHhhccccccccchHHHHHHHHHhhhccCcchhhHhhh
Q 013874 138 QKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWAS 181 (434)
Q Consensus 138 hkYi~RsLEdDFk~VVGIS~~lW~~vviFLLlnv~Gw~~yfWls 181 (434)
+.|=.| +||+-.++| +..||-||+|++|.=. .++++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 444444 899988888 7899999888765521 36677766
No 5
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=29.60 E-value=1.7e+02 Score=34.49 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=32.8
Q ss_pred ecCC--cccccCcchHHHHHHHHHHhhhhhhHHHHHHHhhhcCCc
Q 013874 220 QGSD--QYFWFGRPQLVLHLIHFALFQNAFQITYFFWIWYSFSLK 262 (434)
Q Consensus 220 ~psD--~~FWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~ 262 (434)
+|++ +=..++++.++..++-..++|-.+.++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4543 346677777777777778899999999999998877753
No 6
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=26.59 E-value=1.4e+02 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.620 Sum_probs=22.9
Q ss_pred HHHHHHhhhccCcchhhHhhhhHHHHHHHHHHHhHHHHHH
Q 013874 161 TSFVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSILT 200 (434)
Q Consensus 161 ~~vviFLLlnv~Gw~~yfWlsfiPliliLlVGtKLq~IIt 200 (434)
+|.++|+++ -++..|++++.++|--.|.++.
T Consensus 19 LF~ilfIvl---------mipI~pll~~~~i~~~~E~l~e 49 (72)
T PF13198_consen 19 LFFILFIVL---------MIPISPLLFVWIIGKIIEPLFE 49 (72)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777765 2899999999999975555443
No 7
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=26.28 E-value=28 Score=25.04 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=7.6
Q ss_pred ccceecCCc
Q 013874 216 IPLVQGSDQ 224 (434)
Q Consensus 216 ~p~V~psD~ 224 (434)
+|+|||+|+
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 689999986
No 8
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=18.61 E-value=1e+02 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=19.2
Q ss_pred ccccccchhhHHHHHHHHHHH-HHHHHHHH
Q 013874 16 PLITVEALHQLHILIFFLAVF-HVLYSAIT 44 (434)
Q Consensus 16 pliS~~~LHQLHIFIFvLAv~-HV~ys~~T 44 (434)
|++. -.+.-+++.|+++|+. |.+-.+++
T Consensus 6 p~i~-~~~~P~~i~v~~~~~~~~~~s~l~~ 34 (168)
T PF01956_consen 6 PLIR-WVLLPITIVVFLIAILRGLISELLQ 34 (168)
T ss_pred chHh-hhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 6666 7788889999999854 44444443
No 9
>COG3462 Predicted membrane protein [Function unknown]
Probab=17.68 E-value=96 Score=28.12 Aligned_cols=15 Identities=27% Similarity=1.061 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHhhh
Q 013874 155 VSPVLWTSFVVFLLL 169 (434)
Q Consensus 155 IS~~lW~~vviFLLl 169 (434)
|+|.+|+++++|+++
T Consensus 52 ImpI~~~vvli~lvv 66 (117)
T COG3462 52 IMPIFWAVVLIFLVV 66 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688899998888876
No 10
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=13.14 E-value=3.2e+02 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHH-hHHHHHHHHHHHHhhh
Q 013874 179 WASLIPLIIILAIGT-ELQSILTKMALEISER 209 (434)
Q Consensus 179 WlsfiPliliLlVGt-KLq~IIt~lAlei~e~ 209 (434)
++-+|-+|++|+.|+ ||-.+...|+--+.+-
T Consensus 8 ellIIlvIvlllFG~kKLP~l~~~lGk~ik~F 39 (78)
T PRK00720 8 HWLIVLAVVLLLFGRGKISELMGDVAKGIKSF 39 (78)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 355566677777887 9999999998887653
Done!