Query 013874
Match_columns 434
No_of_seqs 163 out of 227
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 13.1 2.2E+02 0.0077 22.6 4.3 22 52-73 41-62 (79)
2 2l6x_A GPR, green-light absorb 11.1 5.3E+02 0.018 24.0 7.0 51 115-180 57-109 (243)
3 2j3w_A Sedlin, trafficking pro 9.7 1E+02 0.0034 26.5 1.2 34 284-321 107-140 (142)
4 1iyc_A Scarabaecin; antifungal 9.5 1E+02 0.0035 21.3 1.0 9 7-15 15-23 (36)
5 1wy3_A Villin; structural prot 9.4 56 0.0019 22.7 -0.3 12 146-157 3-14 (35)
6 1und_A Advillin, P92; actin bi 9.2 58 0.002 22.9 -0.3 12 146-157 5-16 (37)
7 2w7n_A TRFB transcriptional re 9.0 1.8E+02 0.0061 24.2 2.5 23 307-329 76-98 (101)
8 2our_A CAMP and CAMP-inhibited 9.0 1.8E+02 0.006 28.6 2.9 39 287-327 286-324 (331)
9 1zkl_A HCP1, TM22, high-affini 7.8 1.2E+02 0.004 30.2 1.0 45 287-331 289-333 (353)
10 2kv9_B Integrin beta-3; platel 7.4 1.2E+02 0.0042 24.4 0.7 22 52-73 37-58 (75)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.07 E-value=2.2e+02 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=14.6
Q ss_pred hhhhHHhhhhhccCCcccCCCC
Q 013874 52 IRGWKKWEEETSTHDYEFSNDP 73 (434)
Q Consensus 52 ir~Wk~WE~e~~~~~~~~~~dp 73 (434)
-|.++++|+|-+....+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6779999999776544433334
No 2
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=11.14 E-value=5.3e+02 Score=23.98 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=28.8
Q ss_pred hhHHHHHhhHhhhhcCCCCCCcHHHHHHHHHhhccccccccchHHHHHHHHHhhhccCc--chhhHhh
Q 013874 115 ADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNG--WHALFWA 180 (434)
Q Consensus 115 ~DYltLR~gFI~~H~~~~~kFdFhkYi~RsLEdDFk~VVGIS~~lW~~vviFLLlnv~G--w~~yfWl 180 (434)
.-|++||.|+..+- .. -++.+|+-=. ++.|| ..+-+.++++..| +...+|-
T Consensus 57 ~~Yf~Ma~~~~~~~--~~--~~~~RYidWl----------lTvPL-llvel~Li~~~~g~~~~~~~~~ 109 (243)
T 2l6x_A 57 WHYMYMRGVWIETG--DS--PTVFRYIDWL----------LTVPL-LICEFYLILAAATNVAGSLFKK 109 (243)
T ss_dssp HHHHHHHHHHHHHS--CC--CHHHHHHHHH----------HHHHH-HHHHHHHHHHTTTSCCTHHHHH
T ss_pred HHHHHHHHhhcccC--Cc--cceeehhcHH----------HHHHH-HHHHHHHHHhccCCccHHHHHH
Confidence 36999999988762 22 2566775321 12232 3455556655533 6667774
No 3
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=9.66 E-value=1e+02 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=27.0
Q ss_pred cccccccchhHHHHHhhccccccccccHHHHHHHHHHH
Q 013874 284 FLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWH 321 (434)
Q Consensus 284 ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~ 321 (434)
+.+-|+.=|+| +.|..++.+.|+++|.+.+++|.
T Consensus 107 ~Y~~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 107 LYIKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp HHHHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCC----CCCCceecHHHHHHHHHHHHHhc
Confidence 34446666888 45888999999999999999884
No 4
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=9.49 E-value=1e+02 Score=21.32 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=7.1
Q ss_pred CCCcCCCcc
Q 013874 7 FDSCLQGSE 15 (434)
Q Consensus 7 ~~~C~~Gkv 15 (434)
.+.|++|||
T Consensus 15 rsncpkgkv 23 (36)
T 1iyc_A 15 RSNCPKGKV 23 (36)
T ss_dssp TSCCCSSCE
T ss_pred ccCCCCcce
Confidence 457999986
No 5
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=9.43 E-value=56 Score=22.71 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=9.5
Q ss_pred hhccccccccch
Q 013874 146 EDDFKIVVGVSP 157 (434)
Q Consensus 146 EdDFk~VVGIS~ 157 (434)
++||+.|.|+|.
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888875
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=9.24 E-value=58 Score=22.87 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=9.9
Q ss_pred hhccccccccch
Q 013874 146 EDDFKIVVGVSP 157 (434)
Q Consensus 146 EdDFk~VVGIS~ 157 (434)
++||+.|.|+|.
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 688888888885
No 7
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=9.02 E-value=1.8e+02 Score=24.21 Aligned_cols=23 Identities=17% Similarity=0.598 Sum_probs=17.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhhc
Q 013874 307 SIFDEQTSKALKRWHMAVKKRKK 329 (434)
Q Consensus 307 ~if~e~v~~aL~~W~~~akkk~~ 329 (434)
.+.+++.+.-+++|.+.|+||..
T Consensus 76 v~lP~~~a~~v~~~~~~a~~~~~ 98 (101)
T 2w7n_A 76 AVLPEHQAYIVRKWEADAKKKQE 98 (101)
T ss_dssp EEECHHHHHHHHHHHHHHHC---
T ss_pred eecCHHHHHHHHHHHHHHHHhhc
Confidence 45689999999999999988764
No 8
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=9.01 E-value=1.8e+02 Score=28.60 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=31.1
Q ss_pred ccccchhHHHHHhhccccccccccHHHHHHHHHHHHHHHhh
Q 013874 287 SYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKR 327 (434)
Q Consensus 287 SY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akkk 327 (434)
.|+.+|||..++++-..++. .-+++.+-++.|.+.++++
T Consensus 286 ~~vv~Pl~~~l~~~~p~~~~--~~~~l~~N~~~W~~~~~~~ 324 (331)
T 2our_A 286 NAVAIPCYTTLTQILPPTEP--LLKACRDNLSQWEKVIRGE 324 (331)
T ss_dssp HHTHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 48889999999998666653 3488999999999877654
No 9
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=7.77 E-value=1.2e+02 Score=30.20 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=27.2
Q ss_pred ccccchhHHHHHhhccccccccccHHHHHHHHHHHHHHHhhhcCC
Q 013874 287 SYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKRKKRG 331 (434)
Q Consensus 287 SY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akkk~~~~ 331 (434)
.|+.+|||..++++...-...-.-+++.+-+..|.+.++++.+..
T Consensus 289 ~~vv~Pl~~~l~~~~~~p~~~~~l~~l~~N~~~W~~~~~~~~~~~ 333 (353)
T 1zkl_A 289 TYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGLQREQSSSE 333 (353)
T ss_dssp HHTHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 577899999999876211112234788999999987766554433
No 10
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=7.39 E-value=1.2e+02 Score=24.38 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=15.0
Q ss_pred hhhhHHhhhhhccCCcccCCCC
Q 013874 52 IRGWKKWEEETSTHDYEFSNDP 73 (434)
Q Consensus 52 ir~Wk~WE~e~~~~~~~~~~dp 73 (434)
-|.|++.|+|-+....+..++|
T Consensus 37 rREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 37 RKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp CHHHHHHHHHHHHGGGSSTTSH
T ss_pred HHHHHHHHHHHHHhccccccCC
Confidence 5679999999776555443334
Done!