Query 013874
Match_columns 434
No_of_seqs 163 out of 227
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 18:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013874.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013874hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 22.9 16 0.0012 25.5 1.6 18 232-249 29-46 (51)
2 d1xrda1 f.3.1.1 (A:1-52) Light 12.4 47 0.0034 23.4 1.9 17 22-38 13-30 (52)
3 d1ug0a_ a.217.1.1 (A:) Splicin 9.9 75 0.0055 23.7 2.5 37 193-229 25-62 (88)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.6 26 0.0019 22.9 -0.3 12 146-157 3-14 (35)
5 d1iyca_ g.31.1.2 (A:) Antifung 9.5 48 0.0035 21.3 1.0 9 7-15 15-23 (36)
6 d1unda_ a.14.1.1 (A:) Advillin 9.4 26 0.0019 22.9 -0.3 12 146-157 4-15 (36)
7 d2j3wa1 d.110.4.3 (A:1-140) Se 9.0 51 0.0037 26.5 1.2 34 283-320 104-137 (140)
8 d1q1ha_ a.4.5.41 (A:) Transcri 6.1 39 0.0028 26.0 -0.9 34 146-180 36-81 (88)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 6.0 1.5E+02 0.011 19.2 2.2 14 27-40 21-34 (37)
10 d1w30a_ c.61.1.1 (A:) Pyrimidi 5.6 1.8E+02 0.013 23.7 3.1 19 193-211 9-27 (182)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.93 E-value=16 Score=25.55 Aligned_cols=18 Identities=50% Similarity=0.744 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhhhH
Q 013874 232 QLVLHLIHFALFQNAFQI 249 (434)
Q Consensus 232 ~llL~LIHfiLFQNAFel 249 (434)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 588999999999999986
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.39 E-value=47 Score=23.45 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHH-HH
Q 013874 22 ALHQLHILIFFLAVF-HV 38 (434)
Q Consensus 22 ~LHQLHIFIFvLAv~-HV 38 (434)
.+--+++|+|+||+. |.
T Consensus 13 ~lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 13 ALVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455689999999964 53
No 3
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.92 E-value=75 Score=23.72 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHhhhcccccCccce-ecCCcccccC
Q 013874 193 TELQSILTKMALEISERHAVVQGIPLV-QGSDQYFWFG 229 (434)
Q Consensus 193 tKLq~IIt~lAlei~e~~~~v~G~p~V-~psD~~FWF~ 229 (434)
.++..||.++|.=|++.+...+-...- +.+|..|||=
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL 62 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFL 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceee
Confidence 368899999999998765444322211 3567889884
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.62 E-value=26 Score=22.85 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=9.3
Q ss_pred hhccccccccch
Q 013874 146 EDDFKIVVGVSP 157 (434)
Q Consensus 146 EdDFk~VVGIS~ 157 (434)
++||+.|.|||.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 5
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=9.49 E-value=48 Score=21.32 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=7.1
Q ss_pred CCCcCCCcc
Q 013874 7 FDSCLQGSE 15 (434)
Q Consensus 7 ~~~C~~Gkv 15 (434)
.+.|++|||
T Consensus 15 rsncpkgkv 23 (36)
T d1iyca_ 15 RSNCPKGKV 23 (36)
T ss_dssp TSCCCSSCE
T ss_pred ccCCCCcce
Confidence 457999986
No 6
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.44 E-value=26 Score=22.93 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=9.5
Q ss_pred hhccccccccch
Q 013874 146 EDDFKIVVGVSP 157 (434)
Q Consensus 146 EdDFk~VVGIS~ 157 (434)
|+||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 678888888875
No 7
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.99 E-value=51 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred ccccccccchhHHHHHhhccccccccccHHHHHHHHHH
Q 013874 283 LFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRW 320 (434)
Q Consensus 283 Q~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W 320 (434)
++-+-|+.=|+|. .|+.++...|+++|++..++|
T Consensus 104 ~lYv~~v~NPfy~----~~~pI~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 104 DLYIKFAMNPFYE----PNSPIRSSAFDRKVQFLGKKH 137 (140)
T ss_dssp HHHHHHHHSTTCC----TTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccCC----CCCcccCHHHHHHHHHHHHHH
Confidence 4446677789884 577899999999999999988
No 8
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.06 E-value=39 Score=26.04 Aligned_cols=34 Identities=15% Similarity=0.389 Sum_probs=18.6
Q ss_pred hhccccccccchHHHHHHHHHhhhcc------------CcchhhHhh
Q 013874 146 EDDFKIVVGVSPVLWTSFVVFLLLNV------------NGWHALFWA 180 (434)
Q Consensus 146 EdDFk~VVGIS~~lW~~vviFLLlnv------------~Gw~~yfWl 180 (434)
|++.....||..-- +==++|.|.+. .||++|+|-
T Consensus 36 De~iA~~tgi~in~-VRk~Ly~L~~~~L~~y~R~kd~~~gw~~Y~W~ 81 (88)
T d1q1ha_ 36 DEEIANQLNIKVND-VRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWK 81 (88)
T ss_dssp HHHHHHTTTSCHHH-HHHHHHHHHHHTSCEEEEEC---CCCCEEEEE
T ss_pred HHHHHHHhCCcHHH-HHHHHHHHHhCCceEEEEeecCCCCcEEEEEE
Confidence 34555556665421 11235555543 399999993
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.01 E-value=1.5e+02 Score=19.20 Aligned_cols=14 Identities=36% Similarity=0.614 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 013874 27 HILIFFLAVFHVLY 40 (434)
Q Consensus 27 HIFIFvLAv~HV~y 40 (434)
=.+||||||.--.|
T Consensus 21 lLlifvl~vLFssY 34 (37)
T d2axtl1 21 LLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999876555
No 10
>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.62 E-value=1.8e+02 Score=23.73 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHhhhcc
Q 013874 193 TELQSILTKMALEISERHA 211 (434)
Q Consensus 193 tKLq~IIt~lAlei~e~~~ 211 (434)
..++..|.+||.||.|++.
T Consensus 9 ~~I~~~I~rlA~qI~E~~~ 27 (182)
T d1w30a_ 9 ANVGRTISRIAHQIIEKTA 27 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4678999999999998764
Done!