Query 013875
Match_columns 434
No_of_seqs 194 out of 1885
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1.5E-79 3.3E-84 637.9 44.5 428 2-434 92-539 (539)
2 PLN02792 oxidoreductase 100.0 4E-77 8.7E-82 613.1 41.1 400 2-434 104-523 (536)
3 PLN00044 multi-copper oxidase- 100.0 1.1E-76 2.5E-81 612.2 41.1 409 2-434 117-554 (596)
4 PLN02991 oxidoreductase 100.0 2.4E-76 5.2E-81 606.6 40.3 394 2-434 116-530 (543)
5 PLN02835 oxidoreductase 100.0 3E-75 6.5E-80 601.1 41.6 398 2-434 117-531 (539)
6 PLN02354 copper ion binding / 100.0 1.7E-74 3.6E-79 596.4 41.0 403 2-434 115-538 (552)
7 PLN02168 copper ion binding / 100.0 3.3E-74 7.2E-79 591.8 39.4 399 2-434 114-541 (545)
8 TIGR03388 ascorbase L-ascorbat 100.0 6.2E-73 1.3E-77 588.1 40.5 410 2-434 91-538 (541)
9 PLN02604 oxidoreductase 100.0 1.6E-72 3.4E-77 586.7 42.1 410 2-434 114-561 (566)
10 KOG1263 Multicopper oxidases [ 100.0 2E-72 4.4E-77 574.5 39.3 420 2-434 116-555 (563)
11 PLN02191 L-ascorbate oxidase 100.0 3.5E-72 7.6E-77 583.0 40.1 405 2-434 113-561 (574)
12 TIGR03390 ascorbOXfungal L-asc 100.0 6.7E-68 1.5E-72 548.9 37.1 391 2-418 98-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 4.2E-55 9.1E-60 453.3 33.1 328 2-415 132-587 (587)
14 PRK10965 multicopper oxidase; 100.0 8.6E-55 1.9E-59 447.7 28.7 328 2-415 130-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.2E-54 2.7E-59 442.7 26.8 308 5-416 134-469 (471)
16 COG2132 SufI Putative multicop 100.0 6.2E-45 1.4E-49 372.6 27.0 322 2-415 120-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 2.6E-31 5.5E-36 229.1 11.5 107 306-416 30-136 (138)
18 TIGR02376 Cu_nitrite_red nitri 99.9 4.9E-27 1.1E-31 227.9 10.4 170 2-187 112-300 (311)
19 PF00394 Cu-oxidase: Multicopp 99.9 2.4E-25 5.2E-30 196.3 12.4 118 67-184 32-158 (159)
20 TIGR02376 Cu_nitrite_red nitri 99.6 1.1E-13 2.5E-18 134.5 26.0 248 71-416 47-297 (311)
21 PLN02604 oxidoreductase 99.2 2.4E-10 5.2E-15 120.1 13.0 92 310-418 55-146 (566)
22 TIGR03389 laccase laccase, pla 99.0 4.5E-08 9.7E-13 102.7 22.5 240 72-400 23-264 (539)
23 PF07732 Cu-oxidase_3: Multico 98.9 4.6E-09 9.9E-14 87.4 8.4 91 309-417 25-116 (117)
24 PLN02835 oxidoreductase 98.9 2.4E-07 5.3E-12 96.7 22.3 217 72-397 49-276 (539)
25 PLN02354 copper ion binding / 98.8 5.8E-07 1.3E-11 94.1 20.9 225 72-399 47-283 (552)
26 TIGR03388 ascorbase L-ascorbat 98.8 5.8E-08 1.3E-12 101.9 13.0 91 310-418 32-123 (541)
27 PLN02792 oxidoreductase 98.7 6.9E-07 1.5E-11 93.2 17.8 228 72-397 36-267 (536)
28 TIGR03390 ascorbOXfungal L-asc 98.7 9.3E-07 2E-11 92.7 18.9 236 72-391 28-266 (538)
29 PLN02168 copper ion binding / 98.7 1.1E-06 2.3E-11 91.9 18.0 221 72-390 46-267 (545)
30 PLN02991 oxidoreductase 98.7 8.5E-07 1.8E-11 92.4 16.8 217 72-396 48-276 (543)
31 PRK10883 FtsI repressor; Provi 98.6 4.2E-06 9.2E-11 86.3 21.5 222 72-398 66-295 (471)
32 PLN02191 L-ascorbate oxidase 98.6 4.9E-06 1.1E-10 87.8 22.1 248 72-391 43-293 (574)
33 PLN00044 multi-copper oxidase- 98.6 7.8E-06 1.7E-10 86.0 21.3 239 72-395 49-291 (596)
34 TIGR01480 copper_res_A copper- 98.5 5.2E-07 1.1E-11 94.9 9.7 85 73-162 487-571 (587)
35 PRK10965 multicopper oxidase; 98.4 1.2E-06 2.7E-11 91.1 9.9 88 74-162 414-507 (523)
36 PF07731 Cu-oxidase_2: Multico 98.4 4.4E-06 9.4E-11 71.6 11.1 77 84-162 32-119 (138)
37 PF00394 Cu-oxidase: Multicopp 98.3 2.4E-06 5.2E-11 75.2 8.0 93 309-415 59-156 (159)
38 TIGR03095 rusti_cyanin rusticy 98.3 4.9E-06 1.1E-10 72.0 9.4 90 310-415 52-148 (148)
39 KOG1263 Multicopper oxidases [ 97.9 0.00071 1.5E-08 70.7 17.8 224 72-398 48-285 (563)
40 TIGR02656 cyanin_plasto plasto 97.7 0.00012 2.6E-09 58.9 7.3 82 311-415 18-99 (99)
41 COG2132 SufI Putative multicop 97.4 0.00067 1.4E-08 70.0 9.8 88 72-162 343-433 (451)
42 TIGR03096 nitroso_cyanin nitro 97.4 0.00069 1.5E-08 57.0 7.8 59 311-400 62-120 (135)
43 PF07732 Cu-oxidase_3: Multico 97.3 0.00048 1E-08 57.2 5.6 84 72-163 15-99 (117)
44 PF00127 Copper-bind: Copper b 97.1 0.0022 4.7E-08 51.6 7.2 82 311-415 18-99 (99)
45 PRK02888 nitrous-oxide reducta 96.8 0.0046 1E-07 64.8 8.8 78 311-416 556-634 (635)
46 PF13473 Cupredoxin_1: Cupredo 96.4 0.012 2.5E-07 47.8 6.8 61 311-402 36-96 (104)
47 PRK02710 plastocyanin; Provisi 96.3 0.018 3.8E-07 48.0 7.6 71 312-415 49-119 (119)
48 TIGR03096 nitroso_cyanin nitro 96.1 0.025 5.4E-07 47.7 7.4 67 75-162 53-119 (135)
49 TIGR03095 rusti_cyanin rusticy 96.0 0.037 8.1E-07 47.9 8.1 85 70-162 40-132 (148)
50 COG4454 Uncharacterized copper 95.4 0.035 7.5E-07 47.6 5.6 93 312-415 65-157 (158)
51 TIGR02375 pseudoazurin pseudoa 95.3 0.077 1.7E-06 43.8 7.1 40 378-421 54-93 (116)
52 PF13473 Cupredoxin_1: Cupredo 95.2 0.11 2.3E-06 42.1 7.8 60 84-161 33-92 (104)
53 TIGR02657 amicyanin amicyanin. 94.9 0.18 3.9E-06 39.0 7.9 72 311-415 12-83 (83)
54 TIGR03102 halo_cynanin halocya 92.6 0.61 1.3E-05 38.5 7.4 73 311-415 43-115 (115)
55 PF06525 SoxE: Sulfocyanin (So 92.6 0.61 1.3E-05 41.8 7.8 85 72-160 74-168 (196)
56 TIGR02656 cyanin_plasto plasto 92.2 0.48 1E-05 37.9 6.2 68 85-161 16-84 (99)
57 TIGR03094 sulfo_cyanin sulfocy 91.9 2.3 5.1E-05 37.6 10.4 97 310-416 85-186 (195)
58 PF06525 SoxE: Sulfocyanin (So 91.1 2.8 6E-05 37.7 10.3 98 310-417 86-188 (196)
59 PF00116 COX2: Cytochrome C ox 90.7 2.4 5.3E-05 35.2 9.2 73 310-414 46-119 (120)
60 TIGR02866 CoxB cytochrome c ox 90.7 1.1 2.4E-05 40.8 7.8 76 310-417 117-193 (201)
61 PF12690 BsuPI: Intracellular 88.8 5.3 0.00011 30.8 9.0 66 95-161 3-82 (82)
62 COG4454 Uncharacterized copper 88.4 1.1 2.4E-05 38.6 5.4 73 85-161 62-140 (158)
63 COG3794 PetE Plastocyanin [Ene 79.8 7.3 0.00016 32.7 6.6 72 312-415 56-127 (128)
64 PRK02710 plastocyanin; Provisi 79.1 7.5 0.00016 32.1 6.5 60 85-162 46-105 (119)
65 PRK02888 nitrous-oxide reducta 78.5 7.6 0.00016 41.4 7.7 62 85-163 554-617 (635)
66 PF00116 COX2: Cytochrome C ox 77.0 29 0.00063 28.7 9.5 61 85-164 45-105 (120)
67 COG1622 CyoA Heme/copper-type 75.3 9.3 0.0002 36.0 6.7 77 310-418 137-214 (247)
68 PF01835 A2M_N: MG2 domain; I 74.4 21 0.00046 28.0 7.8 69 90-163 11-85 (99)
69 PF04151 PPC: Bacterial pre-pe 73.4 16 0.00035 26.7 6.4 66 85-162 4-69 (70)
70 PF00127 Copper-bind: Copper b 71.1 28 0.00061 27.5 7.7 63 85-162 16-85 (99)
71 MTH00140 COX2 cytochrome c oxi 64.6 25 0.00053 32.7 7.0 76 310-417 140-216 (228)
72 MTH00047 COX2 cytochrome c oxi 64.6 53 0.0011 29.7 9.0 75 311-417 117-192 (194)
73 PF07691 PA14: PA14 domain; I 63.1 63 0.0014 26.9 8.9 62 87-153 53-121 (145)
74 PF10633 NPCBM_assoc: NPCBM-as 59.6 68 0.0015 23.9 7.6 64 90-162 1-74 (78)
75 TIGR02695 azurin azurin. Azuri 59.5 59 0.0013 27.1 7.5 74 84-160 14-109 (125)
76 smart00758 PA14 domain in bact 59.2 73 0.0016 26.4 8.5 63 88-155 52-115 (136)
77 PF11142 DUF2917: Protein of u 58.1 39 0.00084 24.5 5.6 46 88-145 2-47 (63)
78 TIGR03094 sulfo_cyanin sulfocy 57.6 51 0.0011 29.4 7.2 86 72-161 73-168 (195)
79 PF07705 CARDB: CARDB; InterP 52.9 1E+02 0.0022 23.6 9.6 67 88-163 13-83 (101)
80 PTZ00047 cytochrome c oxidase 51.7 67 0.0014 28.1 7.0 75 310-416 73-148 (162)
81 TIGR02375 pseudoazurin pseudoa 49.2 24 0.00053 29.1 3.8 28 3-35 61-88 (116)
82 TIGR01433 CyoA cytochrome o ub 48.3 46 0.001 30.9 5.9 74 312-417 141-215 (226)
83 MTH00129 COX2 cytochrome c oxi 48.0 60 0.0013 30.2 6.6 76 310-417 140-216 (230)
84 PF14344 DUF4397: Domain of un 47.8 1.5E+02 0.0033 24.0 11.5 22 131-152 62-83 (122)
85 COG1470 Predicted membrane pro 45.5 1.9E+02 0.0042 29.8 10.0 74 85-165 388-469 (513)
86 PF11614 FixG_C: IG-like fold 44.2 67 0.0014 26.2 5.8 49 95-152 34-84 (118)
87 PRK05461 apaG CO2+/MG2+ efflux 43.6 72 0.0016 26.8 5.8 48 95-145 32-83 (127)
88 PF04379 DUF525: Protein of un 43.0 43 0.00094 26.2 4.1 49 95-146 15-67 (90)
89 TIGR03102 halo_cynanin halocya 40.8 1.5E+02 0.0032 24.4 7.1 62 84-162 40-101 (115)
90 PRK10378 inactive ferrous ion 40.6 1.3E+02 0.0029 30.2 8.1 71 73-161 33-103 (375)
91 PF14524 Wzt_C: Wzt C-terminal 39.7 1.2E+02 0.0027 24.8 6.9 75 86-163 27-107 (142)
92 MTH00008 COX2 cytochrome c oxi 38.5 1.3E+02 0.0028 28.0 7.3 76 310-417 140-216 (228)
93 COG3794 PetE Plastocyanin [Ene 36.7 1.4E+02 0.0031 25.0 6.5 63 84-163 52-114 (128)
94 PF15415 DUF4622: Protein of u 36.5 1.5E+02 0.0032 27.7 6.9 42 86-129 94-137 (310)
95 MTH00023 COX2 cytochrome c oxi 35.9 1.4E+02 0.0029 28.1 7.0 76 310-417 151-227 (240)
96 TIGR01432 QOXA cytochrome aa3 35.6 86 0.0019 28.8 5.6 75 312-418 132-207 (217)
97 cd08058 MPN_euk_mb Mpr1p, Pad1 35.0 17 0.00036 29.9 0.7 6 11-16 70-75 (119)
98 TIGR02866 CoxB cytochrome c ox 34.2 2E+02 0.0043 26.0 7.7 61 86-165 117-177 (201)
99 PF14509 GH97_C: Glycosyl-hydr 31.8 2.7E+02 0.0059 22.3 9.9 85 72-162 5-102 (103)
100 PF03459 TOBE: TOBE domain; I 30.7 37 0.0008 24.1 1.9 49 99-152 13-61 (64)
101 MTH00098 COX2 cytochrome c oxi 29.8 2.1E+02 0.0046 26.5 7.2 76 310-417 140-216 (227)
102 MTH00185 COX2 cytochrome c oxi 29.5 2.5E+02 0.0053 26.2 7.6 75 310-416 140-215 (230)
103 PF10989 DUF2808: Protein of u 28.1 66 0.0014 27.6 3.3 23 376-398 99-125 (146)
104 PF14392 zf-CCHC_4: Zinc knuck 27.7 78 0.0017 21.5 3.0 41 366-406 4-45 (49)
105 PRK13202 ureB urease subunit b 27.3 2.5E+02 0.0055 22.6 6.0 64 87-151 12-85 (104)
106 MTH00038 COX2 cytochrome c oxi 27.2 2.5E+02 0.0054 26.1 7.2 75 310-416 140-215 (229)
107 TIGR02745 ccoG_rdxA_fixG cytoc 27.2 2.1E+02 0.0045 29.5 7.2 50 95-152 349-399 (434)
108 PRK10378 inactive ferrous ion 26.7 2E+02 0.0044 28.9 6.8 38 375-417 81-118 (375)
109 MTH00139 COX2 cytochrome c oxi 26.7 2.2E+02 0.0048 26.3 6.8 76 310-417 140-216 (226)
110 PF14874 PapD-like: Flagellar- 26.2 3.1E+02 0.0067 21.2 9.3 60 89-159 15-82 (102)
111 COG3354 FlaG Putative archaeal 26.0 4.2E+02 0.0092 22.7 7.9 82 72-162 51-141 (154)
112 KOG1554 COP9 signalosome, subu 25.3 33 0.00071 32.7 0.9 12 10-21 135-148 (347)
113 cd08067 MPN_2A_DUB Mov34/MPN/P 25.1 31 0.00067 31.1 0.7 7 11-17 84-90 (187)
114 PF05938 Self-incomp_S1: Plant 24.9 1.2E+02 0.0027 24.2 4.2 39 373-414 28-68 (110)
115 PF13464 DUF4115: Domain of un 24.7 2E+02 0.0044 21.3 5.1 11 88-98 24-34 (77)
116 PRK15295 fimbrial assembly cha 24.1 2.1E+02 0.0046 26.5 6.1 20 85-104 72-91 (226)
117 PRK10525 cytochrome o ubiquino 23.9 2.1E+02 0.0045 28.1 6.2 72 312-415 153-225 (315)
118 TIGR02657 amicyanin amicyanin. 23.8 3.1E+02 0.0068 20.6 6.1 62 84-161 9-70 (83)
119 cd08068 MPN_BRCC36 Mov34/MPN/P 23.3 34 0.00074 32.1 0.7 8 10-17 93-100 (244)
120 COG1622 CyoA Heme/copper-type 22.5 57 0.0012 30.7 2.0 40 2-46 181-221 (247)
121 PRK09918 putative fimbrial cha 22.4 2.3E+02 0.005 26.3 6.0 20 85-104 75-94 (230)
122 PF14478 DUF4430: Domain of un 22.2 54 0.0012 23.9 1.4 27 73-99 42-68 (68)
123 PRK15299 fimbrial chaperone pr 22.1 2.2E+02 0.0048 26.3 5.8 21 85-105 76-96 (227)
124 PF06355 Aegerolysin: Aegeroly 22.0 2.3E+02 0.0049 23.9 5.3 67 94-160 2-76 (131)
125 PF07385 DUF1498: Protein of u 21.9 1.7E+02 0.0036 27.1 4.7 29 119-147 139-167 (225)
126 PF09394 Inhibitor_I42: Chagas 21.5 3.6E+02 0.0077 20.5 6.2 70 88-162 1-72 (92)
127 PRK15208 long polar fimbrial c 21.3 2.3E+02 0.0049 26.3 5.7 21 85-105 73-93 (228)
128 TIGR00192 urease_beta urease, 21.2 4E+02 0.0086 21.4 6.1 64 87-151 12-84 (101)
129 MTH00076 COX2 cytochrome c oxi 20.9 3.9E+02 0.0085 24.7 7.2 76 310-417 140-216 (228)
130 PF06775 Seipin: Putative adip 20.8 1.1E+02 0.0023 27.8 3.4 49 135-183 50-105 (199)
131 MTH00051 COX2 cytochrome c oxi 20.6 4E+02 0.0087 24.8 7.2 76 310-417 144-220 (234)
132 KOG1555 26S proteasome regulat 20.3 38 0.00082 32.9 0.3 7 10-16 119-125 (316)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.5e-79 Score=637.91 Aligned_cols=428 Identities=58% Similarity=0.978 Sum_probs=318.1
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhHH---------HHhhhccCcchHHHHHHhhhhccCCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKL---------SKLLEKTSSLGIDIIYSNLLKNSFGFLALN 71 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
||+ .|+||||||||...|+ . ||+|+|||.++..... ..++.|+.......++.... .....+..+
T Consensus 92 f~~~~~~GT~WYHsH~~~~~-~---Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~-~~~~~~~~~ 166 (539)
T TIGR03389 92 FTITGQRGTLWWHAHISWLR-A---TVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQAN-QTGGAPNVS 166 (539)
T ss_pred EEecCCCeeEEEecCchhhh-c---cceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHH-hcCCCCCcc
Confidence 676 6999999999996553 3 9999999887543211 11112221111112222211 112224567
Q ss_pred CeEEEcCCCC------CCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEE
Q 013875 72 PTYIINSAPF------YLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTN 145 (434)
Q Consensus 72 d~~lvNG~~~------~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~d 145 (434)
|.+|||||.+ ....+.++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.+++|+.++++.|++|||||
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRyd 246 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTN 246 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEE
Confidence 9999999953 0124689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCC
Q 013875 146 VLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVP 225 (434)
Q Consensus 146 v~v~~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p 225 (434)
|+|++++++|+||||+....+|..........|||+|.+....+.+..+..+...++.....+...++.+..+.+|..+|
T Consensus 247 Vlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p 326 (539)
T TIGR03389 247 VLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVP 326 (539)
T ss_pred EEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCC
Confidence 99999987899999998765543223345689999998865443333333333333322222222344443333343344
Q ss_pred cccceEEEEEeccCCCCCC--ccC--CCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCC
Q 013875 226 QKVDRKLFYTIGFGKDSCP--TCV--NGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTA 301 (434)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~--~~~--g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 301 (434)
..+++++.+.+++...... .+. ....+.|++||++|..|.+|+|.+.+.+++|.+..++++.+|+.|++++...+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 406 (539)
T TIGR03389 327 VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPN 406 (539)
T ss_pred CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCccc
Confidence 4567777666654322110 000 013577999999999999999988887777777777788888888877653223
Q ss_pred CCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcE
Q 013875 302 SLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGW 381 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~ 381 (434)
++..+.+++++.++.|++|+|+|+|.+.+....||||||||+||||++|.|.|+..+....+|+.||+||||+.||++||
T Consensus 407 ~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~ 486 (539)
T TIGR03389 407 NLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGW 486 (539)
T ss_pred ccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCce
Confidence 33344577889999999999999996533355899999999999999999999865555578999999999999999999
Q ss_pred EEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 382 TAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 382 v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
++|||++||||.|+|||||+||+..||+++|.+.++++..++++++|..+|+|
T Consensus 487 vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 487 AAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred EEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999988777777899999999999
No 2
>PLN02792 oxidoreductase
Probab=100.00 E-value=4e-77 Score=613.10 Aligned_cols=400 Identities=24% Similarity=0.331 Sum_probs=299.2
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhHH--H-------HhhhccCcchHHHHHHhhhhccCCC-CCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKL--S-------KLLEKTSSLGIDIIYSNLLKNSFGF-LAL 70 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l--~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 70 (434)
||. .|+||||||||.+.|+.+ ||+|+|||++++.... . -++.|+.....+. +... ....+. +..
T Consensus 104 F~~~~q~GT~WYHsH~~~q~~~---Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~-~~~~-~~~g~~~~~~ 178 (536)
T PLN02792 104 FQVKDQVGSYFYFPSLAVQKAA---GGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTT-LKKI-LDGGRKLPLM 178 (536)
T ss_pred EEeCCCccceEEecCcchhhhc---ccccceEEeCCcccCcCCCcccceeEEEecccccCCHHH-HHHH-hhccCcCCCC
Confidence 565 599999999999999999 9999999887543211 0 1112222111111 1111 112222 237
Q ss_pred CCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 71 NPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 71 ~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
+|++||||++. ...+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|..+++|.|++||||||+|++
T Consensus 179 ~d~~liNG~~~-~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGV-SYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCC-CCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 89999999964 23468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCccc--
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKV-- 228 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~-- 228 (434)
++++|+|||++.....+ ......|||+|.++..... ..+..|...+.....++...++....+..|.++|+..
T Consensus 258 ~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 332 (536)
T PLN02792 258 DQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYH 332 (536)
T ss_pred CCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccc
Confidence 99889999999864322 2346789999988644321 1222333344333222222223322222233344322
Q ss_pred ------ceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccC-CCCCCCCCCCCCCCCCCC
Q 013875 229 ------DRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDKPPKPFNYTGAPLTA 301 (434)
Q Consensus 229 ------~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~ 301 (434)
++++.+..++. .+. +...|++||.+|..|++|+|.+++..++|.+..+ +++.+|..++.
T Consensus 333 ~~~~~~~~~~~~~~~~~-----~~~--~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~------- 398 (536)
T PLN02792 333 YGKMKISRTLILESSAA-----LVK--RKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGM------- 398 (536)
T ss_pred cceeccceeEEeccccc-----ccC--ceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCC-------
Confidence 22222222111 122 3567999999999999999998887777877654 66666642221
Q ss_pred CCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcE
Q 013875 302 SLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGW 381 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~ 381 (434)
...+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.||++|||+.|+++||
T Consensus 399 ----~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw 470 (536)
T PLN02792 399 ----RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPESW 470 (536)
T ss_pred ----ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECCCCE
Confidence 12567889999999999999964 56899999999999999999999864 46689999999999999999999
Q ss_pred EEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 382 TAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 382 v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
++|||+|||||+|+||||+.+|+..||.++|.|+++.+..+++.+||.+++.|
T Consensus 471 ~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 471 TAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred EEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999888888999999999999
No 3
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.1e-76 Score=612.24 Aligned_cols=409 Identities=26% Similarity=0.366 Sum_probs=306.6
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhH----------HHHhhhccCcchHHHHHHhhhhccCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRK----------LSKLLEKTSSLGIDIIYSNLLKNSFGFLAL 70 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (434)
|++ .|+||||||||.+.|+++ ||+|+|||.+++... ..-++.|+.....+.+.... ........
T Consensus 117 F~~~dq~GT~WYHsH~~~Q~~~---Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l--~~g~~~~~ 191 (596)
T PLN00044 117 FQVKDQVGSFFYAPSTALHRAA---GGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRAL--DAGDLLGA 191 (596)
T ss_pred EEeCCCCceeEeeccchhhhhC---cCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHH--hcCCCCCC
Confidence 566 599999999999999999 999999988754311 11111222221111111111 11122346
Q ss_pred CCeEEEcCCCCC----------CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCC
Q 013875 71 NPTYIINSAPFY----------LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAP 140 (434)
Q Consensus 71 ~d~~lvNG~~~~----------~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~ 140 (434)
+|.+||||++.. ...+.++|++||+|||||||++..+.+.|+|+||+|+|||+||.+++|+.++.|.|++
T Consensus 192 ~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~ 271 (596)
T PLN00044 192 PDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHV 271 (596)
T ss_pred CCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcC
Confidence 799999998641 0124799999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCCC-ceEEEEecc-CCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCC-CCChhhhhhhhhccccCCC
Q 013875 141 GQTTNVLVQANQKPG-RYFMAARPF-NDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPA-SNDSEFALNYNKKLRSLNS 217 (434)
Q Consensus 141 geR~dv~v~~~~~~g-~~~l~a~~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~l~~l~~ 217 (434)
||||||+|+++++++ +|||++... ..+. .++...+.|||+|.++........|..+. ..++..+.++...++.+..
T Consensus 272 GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~ 350 (596)
T PLN00044 272 GQSYSFLLTMDQNASTDYYVVASARFVDAA-VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVT 350 (596)
T ss_pred CceEEEEEECCCCCCCceEEEEecccccCc-cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccC
Confidence 999999999999765 899998642 2332 23456789999998864422212343343 4555544444445554443
Q ss_pred CCCCCCCCcccceEEEEEeccCC-CCC---CccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCC
Q 013875 218 PKFPADVPQKVDRKLFYTIGFGK-DSC---PTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFN 293 (434)
Q Consensus 218 ~~~p~~~p~~~~~~~~l~~~~~~-~~~---~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~ 293 (434)
++.+.+.|+..+....+.++... ..+ ..|. +...|+|||.+|..|++|+|.+++.+++|.|..++|+.+|...
T Consensus 351 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~- 427 (596)
T PLN00044 351 ASGARPNPQGSFHYGDITVTDVYLLQSMAPELID--GKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRL- 427 (596)
T ss_pred CCcCCCCCcccceeeEEeeeeeeeeccccccccC--CeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccc-
Confidence 33333333333332223322111 000 1122 3578999999999999999988888888999888888777321
Q ss_pred CCCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccce
Q 013875 294 YTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNT 373 (434)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDT 373 (434)
....+.++.++.|++|||+|+|.. ...||||||||+|+||++|.|.|++. ++..+|+.||++|||
T Consensus 428 -----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdT 492 (596)
T PLN00044 428 -----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARST 492 (596)
T ss_pred -----------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccce
Confidence 112577889999999999999964 56999999999999999999999865 566899999999999
Q ss_pred eEecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCC-CCCCCCCCCCCCCC
Q 013875 374 AAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGP-DQSVLPPPTDLPPC 434 (434)
Q Consensus 374 v~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~-~~~~~~~p~~~~~c 434 (434)
+.|+++||++|||++||||+|++||||+.|...||.++|.|+++.+. .+++++||.+++.|
T Consensus 493 v~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 493 IQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred EEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999988765 77999999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.4e-76 Score=606.55 Aligned_cols=394 Identities=24% Similarity=0.338 Sum_probs=292.9
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHH---------HhhhccCcchHHHHHHhhhhccCCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLS---------KLLEKTSSLGIDIIYSNLLKNSFGFLALN 71 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
|++ .|+||||||||...|+.+ ||+|+|||++++..... -++.|+.....+.+... ....+..+.+
T Consensus 116 F~~~~q~GT~WYHsH~~~q~~~---Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~--~~~~~~~~~~ 190 (543)
T PLN02991 116 LQVKDQIGSFYYFPSLGFHKAA---GGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ--LDNGGKLPLP 190 (543)
T ss_pred EEeCCCCcceEEecCcchhhhC---CCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH--hhcCCCCCCC
Confidence 566 599999999999999988 99999998875422111 11122222111112111 1223345688
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
|++|||||+ ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++.+.|++||||||+|+++
T Consensus 191 d~~liNG~~---~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 191 DGILINGRG---SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CEEEEccCC---CCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 999999995 35789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhh--hhhhhhccccCCCCCCCCCCCcc--
Q 013875 152 QKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEF--ALNYNKKLRSLNSPKFPADVPQK-- 227 (434)
Q Consensus 152 ~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~--~~~~~~~l~~l~~~~~p~~~p~~-- 227 (434)
+++|+|||++...... ......|||+|.++......+.|..|...+... ..+....+.+. .+.+.|..
T Consensus 268 ~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~----~~~~~p~~~~ 339 (543)
T PLN02991 268 QPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTAS----GPRPNPQGSY 339 (543)
T ss_pred CCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCC----CCCCCCCccc
Confidence 9889999999864322 234579999999864322111222221111100 00111222221 11122221
Q ss_pred ------cceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccC-CCCCCCCCCCCCCCCCC
Q 013875 228 ------VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDKPPKPFNYTGAPLT 300 (434)
Q Consensus 228 ------~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~ 300 (434)
.++++.+..++.. +. +...|+|||.+|..|++|+|.++|..++|.|..+ +++.+|..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~-----~~--g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~--------- 403 (543)
T PLN02991 340 HYGKINITRTIRLANSAGN-----IE--GKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNG--------- 403 (543)
T ss_pred cccccccceeEEEeecccc-----cC--ceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCC---------
Confidence 2223333222211 22 3568999999999999999988888777887654 44433311
Q ss_pred CCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCc
Q 013875 301 ASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGG 380 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g 380 (434)
.....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.||++|||+.||++|
T Consensus 404 ---~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~G 476 (543)
T PLN02991 404 ---AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRS 476 (543)
T ss_pred ---ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCC
Confidence 0112456789999999999999964 56999999999999999999999875 4567999999999999999999
Q ss_pred EEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 381 WTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 381 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
|++|||++||||.|+|||||.+|+..||.+++.|.++.+..+++.+||.++++|
T Consensus 477 w~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 477 WTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred EEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999988888999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=3e-75 Score=601.14 Aligned_cols=398 Identities=24% Similarity=0.324 Sum_probs=286.9
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHH---------HhhhccCcchHHHHHHhhhhccCCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLS---------KLLEKTSSLGIDIIYSNLLKNSFGFLALN 71 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
|+. .|+||||||||.+.|+++ ||+|+|||.+++...+. -.+.|+.....+.+... ....+..+.+
T Consensus 117 F~~~~q~GT~WYHsH~~~q~~~---Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~--~~~g~~~~~~ 191 (539)
T PLN02835 117 FQTKDQIGTFTYFPSTLFHKAA---GGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR--LDSGKVLPFP 191 (539)
T ss_pred EEECCCCEeEEEEeCccchhcC---cccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH--hhcCCCCCCC
Confidence 554 699999999999999999 99999998654322111 11122211111111111 1122335678
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
|++||||+. .+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||++++|..++.+.|++||||||+|+++
T Consensus 192 d~~liNG~~----~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~ 267 (539)
T PLN02835 192 DGVLINGQT----QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLN 267 (539)
T ss_pred ceEEEcccc----CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcC
Confidence 999999995 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCC---ChhhhhhhhhccccCCCCCCCCC---C-
Q 013875 152 QKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN---DSEFALNYNKKLRSLNSPKFPAD---V- 224 (434)
Q Consensus 152 ~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~---~~~~~~~~~~~l~~l~~~~~p~~---~- 224 (434)
+++|+|||++.....+ ......|+|+|.++.....+..|..|... +..........+.+......+.. .
T Consensus 268 ~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 343 (539)
T PLN02835 268 QSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYG 343 (539)
T ss_pred CCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCcccccc
Confidence 8889999998642222 23558999999875432221222222110 00000000001111111000000 0
Q ss_pred CcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013875 225 PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLG 304 (434)
Q Consensus 225 p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~ 304 (434)
....++++.+...+. .+. +...|++||.+|..|.+|+|.+.+...+|.++.+..... +.+..
T Consensus 344 ~~~~~~~~~~~~~~~-----~~~--g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~-----------~~~~~ 405 (539)
T PLN02835 344 KITPTKTIVLANSAP-----LIN--GKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSL-----------PSGGP 405 (539)
T ss_pred ccCCCceEEEecccc-----ccC--CeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccC-----------CCCCc
Confidence 011244444432221 122 346799999999999999988777666666654321100 11111
Q ss_pred cccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEE
Q 013875 305 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAI 384 (434)
Q Consensus 305 ~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~i 384 (434)
.+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++. ....+|+.||+||||+.|+++||++|
T Consensus 406 ~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~I 481 (539)
T PLN02835 406 AFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTI 481 (539)
T ss_pred cccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEE
Confidence 234678899999999999999964 56899999999999999999988754 34567899999999999999999999
Q ss_pred EEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 385 RFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 385 rf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
||+|||||.|+|||||++|+..||+++|+|+++.+..+++++||+++|+|
T Consensus 482 rF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 482 LVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred EEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 99999999999999999999999999999999888888999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.7e-74 Score=596.41 Aligned_cols=403 Identities=24% Similarity=0.326 Sum_probs=289.6
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhH---------HHHhhhccCcchHHHHHHhhhhccCCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRK---------LSKLLEKTSSLGIDIIYSNLLKNSFGFLALN 71 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
||+ .|+||||||||.+.|+.+ ||+|+|||.++.... +.-.+.|+.....+.+.... ......+.+
T Consensus 115 F~~~~q~GT~WYHsH~~~Q~~~---Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~--~~g~~~~~~ 189 (552)
T PLN02354 115 FQPKDQIGSYFYYPSTGMHRAA---GGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFL--DSGRTLGRP 189 (552)
T ss_pred EEeCCCCcceEEecCccceecC---CccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHH--hcCCCCCCC
Confidence 666 599999999999999999 999999988654211 11111222222111111111 111223457
Q ss_pred CeEEEcCCCCC---CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEE
Q 013875 72 PTYIINSAPFY---LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLV 148 (434)
Q Consensus 72 d~~lvNG~~~~---~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v 148 (434)
|++||||+.+. ...+.++|++||+|||||||+|+...+.|+|+||+|+|||+||++++|..++.|.|++||||||+|
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv 269 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLV 269 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEE
Confidence 99999999530 135789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCC--ChhhhhhhhhccccCCCCCCCCCC--
Q 013875 149 QANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN--DSEFALNYNKKLRSLNSPKFPADV-- 224 (434)
Q Consensus 149 ~~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~--~~~~~~~~~~~l~~l~~~~~p~~~-- 224 (434)
++++++|+|||++.....+ ......|||+|.++...+.+..|..+... ......++...+.+....+.+...
T Consensus 270 ~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 345 (552)
T PLN02354 270 TANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYH 345 (552)
T ss_pred ECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccc
Confidence 9999889999998743222 23568999999886543322222221100 000001111112221111111000
Q ss_pred --CcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccC-CccccC-CCCCCCCCCCCCCCCCC
Q 013875 225 --PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLK-GVFKAD-FPDKPPKPFNYTGAPLT 300 (434)
Q Consensus 225 --p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~-g~~~~~-~~~~~p~~~~~~~~~~~ 300 (434)
....++++.+...+. ++. +...|++||.+|..|++|+|.+.+.++. |.++.+ +++.+|..++
T Consensus 346 ~~~~~~~~~~~~~~~~~-----~~~--g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~------- 411 (552)
T PLN02354 346 YGKINITRTIKLVNSAS-----KVD--GKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT------- 411 (552)
T ss_pred cccccccceEEEecccc-----cCC--ceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccC-------
Confidence 011233443433211 112 3567999999999999999988776554 666544 3444443211
Q ss_pred CCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCc
Q 013875 301 ASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGG 380 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g 380 (434)
..+.++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ....+|+.||++|||+.||++|
T Consensus 412 ---~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~G 484 (552)
T PLN02354 412 ---KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKS 484 (552)
T ss_pred ---ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCC
Confidence 0123567789999999999999964 56899999999999999999999865 3567899999999999999999
Q ss_pred EEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 381 WTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 381 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
|++|||+|||||+|+|||||..|+..||.+.|.|.++.+..+++..+|.+.+.|
T Consensus 485 w~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 485 WAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred eEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 999999999999999999999999999999999998877777888899999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.3e-74 Score=591.79 Aligned_cols=399 Identities=24% Similarity=0.328 Sum_probs=281.4
Q ss_pred Ccc-cCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHH---------HhhhccCcchHHHHHHhhhhccCCCCCCC
Q 013875 2 LKR-SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLS---------KLLEKTSSLGIDIIYSNLLKNSFGFLALN 71 (434)
Q Consensus 2 ~~~-~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
||+ .|+||||||||...|+.+ ||+|+|||.+++..... -.+.|+.....+.+...+ ......+.+
T Consensus 114 F~~~~q~GT~WYHsH~~~Q~~~---GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~--~~g~~~~~~ 188 (545)
T PLN02168 114 FQVKDQIGSYFYFPSLLLQKAA---GGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASL--DNGHSLPNP 188 (545)
T ss_pred EEeCCCCceEEEecChhhhhhC---cceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhh--hcCCCCCCC
Confidence 676 599999999999999999 99999998875532111 011122111111111111 111123578
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
|++||||++. ..+.++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|+++
T Consensus 189 d~~liNG~~~--~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 189 DGILFNGRGP--EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CEEEEeccCC--CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 9999999963 35789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-C---ceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcc
Q 013875 152 QKP-G---RYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQK 227 (434)
Q Consensus 152 ~~~-g---~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~ 227 (434)
+++ | +|||++.....+ ....+.|||+|.++......+.+..|...+.....+...+++....+..+.+.|..
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~ 342 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQG 342 (545)
T ss_pred CCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcc
Confidence 654 4 899999864332 23567899999875443211222223333322211111112211111111112211
Q ss_pred --------cceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccC-CCCCCCCCCCCCCCC
Q 013875 228 --------VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDKPPKPFNYTGAP 298 (434)
Q Consensus 228 --------~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~ 298 (434)
.++++.+...+ . .+. +...|++||.+|..|.+|+|.+++..+++.+..+ ++..+|..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~--~---~~~--g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~------- 408 (545)
T PLN02168 343 SYHYGRINVTRTIILHNDV--M---LSS--GKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNK------- 408 (545)
T ss_pred cccccccccceeEEecccc--c---ccC--ceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcC-------
Confidence 22333322211 0 122 3568999999999999998877766554433322 33333310
Q ss_pred CCCCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecC
Q 013875 299 LTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPT 378 (434)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~ 378 (434)
.....+.++.++.|++|+|+|+|.. ...||||||||+||||++|.|.|++. ....+|+.||++|||+.||+
T Consensus 409 -----~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~-~~~~~Nl~nP~rRDTv~vp~ 479 (545)
T PLN02168 409 -----TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSES-KKAGYNLVDAVSRSTVQVYP 479 (545)
T ss_pred -----ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCcc-ccccCCCCCCCccceEEeCC
Confidence 0012466789999999999999964 56999999999999999999999864 34578999999999999999
Q ss_pred CcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCC-----CC-CCCCCCCCCCCCCC
Q 013875 379 GGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGP-----GP-DQSVLPPPTDLPPC 434 (434)
Q Consensus 379 ~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~-----~~-~~~~~~~p~~~~~c 434 (434)
+||++|||+|||||.|+|||||++|...||.+.|+|+++. +. .+.+..||.+++.|
T Consensus 480 ~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 480 YSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 9999999999999999999999888888888888775332 22 45788999999999
No 8
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=6.2e-73 Score=588.06 Aligned_cols=410 Identities=30% Similarity=0.464 Sum_probs=284.4
Q ss_pred CcccCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHH-H-------hhhccCcchHHHHHHhhhhccCCCCCCCCe
Q 013875 2 LKRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLS-K-------LLEKTSSLGIDIIYSNLLKNSFGFLALNPT 73 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (434)
||+.|+||||||||.+.|+.+ ||+|+|||.++...... . ++.|+........+......+......+|.
T Consensus 91 f~~~~~Gt~wyH~H~~~q~~~---Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~ 167 (541)
T TIGR03388 91 FVVDRPGTYFYHGHYGMQRSA---GLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQS 167 (541)
T ss_pred EEcCCCEEEEEEecchHHhhc---cceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcc
Confidence 688999999999999999998 99999998876321111 1 111111111111111111111111235689
Q ss_pred EEEcCCCCC-----------------------CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCC
Q 013875 74 YIINSAPFY-----------------------LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKP 130 (434)
Q Consensus 74 ~lvNG~~~~-----------------------~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p 130 (434)
+||||++.. ..+..++|++|++|||||||+|+.+.+.|+|+||+|+|||+||++++|
T Consensus 168 ~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P 247 (541)
T TIGR03388 168 LLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEP 247 (541)
T ss_pred eEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEeccc
Confidence 999998530 012458999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeCCCCeEEEEEEeCCCC-CceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCC--CCCCCCCCChhhhhh
Q 013875 131 FTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPT--LAQLPASNDSEFALN 207 (434)
Q Consensus 131 ~~~~~~~l~~geR~dv~v~~~~~~-g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~p~~p~~~~~~~~~~ 207 (434)
+.++.|.|++||||||+|++++.+ |+||||+.....+ .......|||+|.+......+. .+..|.+.+......
T Consensus 248 ~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~ 324 (541)
T TIGR03388 248 FTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKA 324 (541)
T ss_pred ceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhc
Confidence 999999999999999999999865 5899999864432 1234578999998754432221 122233333221111
Q ss_pred hhhccccCCCCCCCCCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCC-C
Q 013875 208 YNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFP-D 286 (434)
Q Consensus 208 ~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~-~ 286 (434)
+ .++.+.....+ ..+..+++++.+...... +. +...|++||.+|..|..|+|.+.+..+.+.++.+.+ .
T Consensus 325 ~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~ 394 (541)
T TIGR03388 325 F--SLAIKAAMGSP-KPPETSDRRIVLLNTQNK-----IN--GYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPE 394 (541)
T ss_pred c--chhhhccccCC-CCCCCCCcEEEEeccCcc-----cC--ceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcc
Confidence 1 11111111111 223455677655332211 11 345699999999989889988876655444432211 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCC---CCCCCCccccCCceEEEEecCCcCCCCCCCCCC
Q 013875 287 KPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNFDPVKYPANY 363 (434)
Q Consensus 287 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 363 (434)
..+..|+.... ..+...+.++.++.++.|++|+|+|+|..++ ....||||||||+||||++|.|.|+...+...+
T Consensus 395 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~ 472 (541)
T TIGR03388 395 NYPRDYDIFKP--PPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSY 472 (541)
T ss_pred cccccccccCC--CcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccc
Confidence 11111111110 1122334567889999999999999996422 256899999999999999999999765455679
Q ss_pred CCCCCCccceeEecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 364 NLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 364 n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.. ++++.+|.+++.|
T Consensus 473 n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~-----~~~~~~P~~~~~C 538 (541)
T TIGR03388 473 NLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV-----EKVGKLPKEALGC 538 (541)
T ss_pred cCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccc-----cccCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999997532 4667799999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-72 Score=586.69 Aligned_cols=410 Identities=30% Similarity=0.485 Sum_probs=285.0
Q ss_pred CcccCCCceEEeccCCCcccCCCCCCCcceEEecCChhH--H------HHhhhccCcchHHHHHHhhhhccCCCCCCCCe
Q 013875 2 LKRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRK--L------SKLLEKTSSLGIDIIYSNLLKNSFGFLALNPT 73 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~--l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (434)
|++.|+||||||||...|+.+ ||+|+|||.++.... + .-.+.|+........+......+......+|.
T Consensus 114 f~~~~~Gt~wyH~H~~~q~~~---Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~ 190 (566)
T PLN02604 114 FVVDRPGTYLYHAHYGMQREA---GLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQS 190 (566)
T ss_pred EEcCCCEEEEEeeCcHHHHhC---CCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCc
Confidence 688999999999999999998 999999988753211 1 01112221111111111111111111135789
Q ss_pred EEEcCCCCC---------------------CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCee
Q 013875 74 YIINSAPFY---------------------LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFT 132 (434)
Q Consensus 74 ~lvNG~~~~---------------------~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~ 132 (434)
.||||++.. ...+.++|++|++|||||||+|+.+.++|+|+||+|+|||+||.+++|++
T Consensus 191 ~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~ 270 (566)
T PLN02604 191 LLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFV 270 (566)
T ss_pred eEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccce
Confidence 999998530 12347899999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCeEEEEEEeCCCCC-ceEEEEeccCCCCCCCCCcceEEEEEEcCCCCC-CCCCC-CCCCCCCChhhhhhhh
Q 013875 133 TEAILIAPGQTTNVLVQANQKPG-RYFMAARPFNDAPIPVDNKTATGILQYKGIPNS-LLPTL-AQLPASNDSEFALNYN 209 (434)
Q Consensus 133 ~~~~~l~~geR~dv~v~~~~~~g-~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~-~~~~~-p~~p~~~~~~~~~~~~ 209 (434)
++.|.|++||||||+|++++.+| +||||+.....+. +..++.|||+|.+.... +.+.. +..+.+.+.....+..
T Consensus 271 v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (566)
T PLN02604 271 VKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQS 347 (566)
T ss_pred eeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcch
Confidence 99999999999999999998765 8999987644331 23568999999864321 11111 1112222221111111
Q ss_pred hccccCCCCCCCCCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCC
Q 013875 210 KKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPP 289 (434)
Q Consensus 210 ~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p 289 (434)
..++.+.. .+...+...++++.+...... .. +...|+|||.+|..|..|+|.+.+...+|.++.+ .++
T Consensus 348 ~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-----~~--~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~---~~~ 415 (566)
T PLN02604 348 LAIKARHG--YIHPPPLTSDRVIVLLNTQNE-----VN--GYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQT---PPP 415 (566)
T ss_pred hccccccc--CcCCCCCCCCeEEEEeccccc-----cC--CeEEEEECcccCCCCCCchhHhhhhcCCCcccCC---CCC
Confidence 11111111 111123345666665332211 11 3467999999999888899888776655666422 111
Q ss_pred CCCCC---CCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCC---CCCCCCccccCCceEEEEecCCcCCCCCCCCCC
Q 013875 290 KPFNY---TGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNFDPVKYPANY 363 (434)
Q Consensus 290 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 363 (434)
..+.+ +......+...+.+..++.++.|++||++|+|...+ ....||||||||+||||++|.|.|++.++...+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~ 495 (566)
T PLN02604 416 EGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKY 495 (566)
T ss_pred cccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCcccccccc
Confidence 11111 000000011123456789999999999999996421 356899999999999999999999876666789
Q ss_pred CCCCCCccceeEecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 364 NLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 364 n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
|+.||++|||+.|+++||++|||+|||||.|+|||||+||+..||+++|++.. +.+..+|..++.|
T Consensus 496 nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~-----~~~~~~p~~~~~C 561 (566)
T PLN02604 496 NLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGI-----ERVGKLPSSIMGC 561 (566)
T ss_pred CCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeCh-----hhccCCCCCcCcc
Confidence 99999999999999999999999999999999999999999999999997532 3667889999999
No 10
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-72 Score=574.53 Aligned_cols=420 Identities=45% Similarity=0.711 Sum_probs=339.8
Q ss_pred Cccc-CCCceEEeccCCCcccCCCCCCCcceEEecCChhH---------HHHhhhccCc-chHHHHHHhhhhccCCCCCC
Q 013875 2 LKRS-KSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRK---------LSKLLEKTSS-LGIDIIYSNLLKNSFGFLAL 70 (434)
Q Consensus 2 ~~~~-~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~---------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 70 (434)
|+.. |.||||||||.+.|+++ |++|+|||.++.... ...++.+|.+ ... ..+........+.+..
T Consensus 116 F~v~~q~GT~~yh~h~~~~Ra~---G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~-~~l~~~~~~~~~~p~~ 191 (563)
T KOG1263|consen 116 FTVKDQIGTLWYHSHVSWQRAT---GVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNH-KNLKNFLDRTGALPNP 191 (563)
T ss_pred EEeCCcceeEEEeecccccccc---CceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCH-HHHHHhhccCCCCCCC
Confidence 3444 99999999999999999 999999988875321 1111222222 111 1222233333333444
Q ss_pred CCeEEEcCCCC--CCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEE
Q 013875 71 NPTYIINSAPF--YLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLV 148 (434)
Q Consensus 71 ~d~~lvNG~~~--~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v 148 (434)
+|..+|||+++ .+-.+.++|++||+|||||+|++....+.|+|+||+|+||++||.+++|..+++|.|.||||+|+++
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLv 271 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLL 271 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEE
Confidence 99999999975 1114789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceEEEEeccCCCCC-CCCCcceEEEEEEcCCCCCCC---CCCCCCCCCCChhhhhhhhhccccCCCCCCCCCC
Q 013875 149 QANQKPGRYFMAARPFNDAPI-PVDNKTATGILQYKGIPNSLL---PTLAQLPASNDSEFALNYNKKLRSLNSPKFPADV 224 (434)
Q Consensus 149 ~~~~~~g~~~l~a~~~~~~~~-~~~~~~~~ail~y~~~~~~~~---~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 224 (434)
++++.+++|+|++.++..+.. .+ .....++|+|.++..... +..+..+...++..+..+.+.+|.+.+..++.+.
T Consensus 272 tadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 272 TADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred eCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 999998999999998766532 22 567899999998433222 2223455556666666677788888777777778
Q ss_pred CcccceEEEEEeccCCCCCCccC-CCceEEEeecCccccCCChhh-hHHhhhccCCccccCCCCCCCCCCCCCCCCCCCC
Q 013875 225 PQKVDRKLFYTIGFGKDSCPTCV-NGTRLLATLNNISFVMPQTAL-LQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTAS 302 (434)
Q Consensus 225 p~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~iN~~sf~~p~~pl-l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~ 302 (434)
|.+.++...+.++.+...|+... ..++..++||+.+|..|.+|+ |..++..++|.+..+++..|+..|++++
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~------ 424 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG------ 424 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcc------
Confidence 88888877777776666554321 125778999999999998866 4555556667788889999988888877
Q ss_pred CCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCC-CCCCCCCCCccceeEecCCcE
Q 013875 303 LGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYP-ANYNLVDPIERNTAAVPTGGW 381 (434)
Q Consensus 303 ~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~-~~~n~~~p~~rDTv~vp~~g~ 381 (434)
++.++.++.+++++.||++|+|.+......||||||||+|+||+.|.|.|++.++. ..+|+.+|+.||||.|+||||
T Consensus 425 --~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw 502 (563)
T KOG1263|consen 425 --PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGW 502 (563)
T ss_pred --ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCE
Confidence 23588999999999999999998866677899999999999999999999985555 789999999999999999999
Q ss_pred EEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 382 TAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 382 v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
++|||+|||||+|++|||+++|...||.++|.|.+++...+++.+||.+.++|
T Consensus 503 ~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 503 TAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred EEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 99999999999999999999999999999999999999889999999999999
No 11
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.5e-72 Score=582.99 Aligned_cols=405 Identities=29% Similarity=0.465 Sum_probs=278.5
Q ss_pred CcccCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHHHhhhccCcchHHHHHHhhh------------hccCCCCC
Q 013875 2 LKRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLSKLLEKTSSLGIDIIYSNLL------------KNSFGFLA 69 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 69 (434)
|++.|+||||||||.+.|+.+ ||+|+|||.++....-...++.+.. ++++||. ..+.....
T Consensus 113 f~~~~~GT~wYHsH~~~q~~~---Gl~G~liV~~~~~~~~~~~~d~e~~----l~l~Dw~~~~~~~~~~~~~~~~~~~~~ 185 (574)
T PLN02191 113 FTVEKPGTHFYHGHYGMQRSA---GLYGSLIVDVAKGPKERLRYDGEFN----LLLSDWWHESIPSQELGLSSKPMRWIG 185 (574)
T ss_pred EECCCCeEEEEeeCcHHHHhC---CCEEEEEEccCCCCCCCCCCCeeEE----EeeeccccCChHHHHHhhccCCCCcCC
Confidence 678999999999999999999 9999999864321110000111000 1222221 11111124
Q ss_pred CCCeEEEcCCCCC------------------------CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCC
Q 013875 70 LNPTYIINSAPFY------------------------LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDA 125 (434)
Q Consensus 70 ~~d~~lvNG~~~~------------------------~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG 125 (434)
.+|.+||||++.. ..+..++|++||+|||||||+|+.+.++|+|+||+|+|||+||
T Consensus 186 ~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG 265 (574)
T PLN02191 186 EAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADG 265 (574)
T ss_pred CCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCC
Confidence 5789999998630 1223699999999999999999999999999999999999999
Q ss_pred cccCCeeeeEEEeCCCCeEEEEEEeCCCC-CceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCC--CCCCCCCCh
Q 013875 126 VYTKPFTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTL--AQLPASNDS 202 (434)
Q Consensus 126 ~~~~p~~~~~~~l~~geR~dv~v~~~~~~-g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~--p~~p~~~~~ 202 (434)
++++|+.+++|.|++||||||+|++++.+ ++||||+.....+. ......|||+|.+......+.. +..|.+.+.
T Consensus 266 ~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~ 342 (574)
T PLN02191 266 NYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPVTPRWDDF 342 (574)
T ss_pred eeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCCCCccccc
Confidence 99999999999999999999999999976 58999997543331 2234579999987544322221 112222222
Q ss_pred hhhhhhhhccccCCCCCCCCCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCcccc
Q 013875 203 EFALNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKA 282 (434)
Q Consensus 203 ~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~ 282 (434)
...... ....+.....+.......++++.+..... .. +...|++||++|..|..|+|.+.+.+.++.+..
T Consensus 343 ~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------~~--~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~ 412 (574)
T PLN02191 343 ERSKNF--SKKIFSAMGSPSPPKKYRKRLILLNTQNL------ID--GYTKWAINNVSLVTPATPYLGSVKYNLKLGFNR 412 (574)
T ss_pred chhhcc--cccccccccCCCCCCcccceEEEecccce------eC--CeEEEEECcccCcCCCcchHHHHhhccCccccc
Confidence 111111 11111100011111122345554432110 11 345799999999989899988877665555554
Q ss_pred CCCCCC-CCCCCCCCCCCCCCC-CcccceeeeEeecCCeEEEEEEeCCCC---CCCCCCccccCCceEEEEecCCcCCCC
Q 013875 283 DFPDKP-PKPFNYTGAPLTASL-GTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNFDPV 357 (434)
Q Consensus 283 ~~~~~~-p~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~vl~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~ 357 (434)
+.+... +..|+..+.. .+ ..+.++.++.++.|++|||+|+|.... ....||||||||+||||++|.|.|++.
T Consensus 413 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~ 489 (574)
T PLN02191 413 KSPPRSYRMDYDIMNPP---PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPG 489 (574)
T ss_pred CCCcccccccccccCCC---ccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcc
Confidence 433211 1112211110 01 123356788999999999999996421 257899999999999999999999875
Q ss_pred CCCCCCCCCCCCccceeEecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCCCCCCCCCCCCCCC
Q 013875 358 KYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 434 (434)
Q Consensus 358 ~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~~~~~~~p~~~~~c 434 (434)
.....+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.... +.++.+|.+++.|
T Consensus 490 ~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~-----~~~~~~p~~~~~C 561 (574)
T PLN02191 490 IDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGL-----NRIGKIPDEALGC 561 (574)
T ss_pred cCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecCh-----hhccCCCcchhhh
Confidence 44567899999999999999999999999999999999999999999999999996422 2445578889999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.7e-68 Score=548.94 Aligned_cols=391 Identities=26% Similarity=0.377 Sum_probs=268.3
Q ss_pred Ccc--cCCCceEEeccCCCcccCCCCCCCcceEEecCChhH------HHHhhhccCcchHHHHHHhhhhccCCCCCCCCe
Q 013875 2 LKR--SKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRK------LSKLLEKTSSLGIDIIYSNLLKNSFGFLALNPT 73 (434)
Q Consensus 2 ~~~--~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (434)
||+ .|+||||||||.+.|+. ||+|+|||++++... +..++.|+.......+..............+|.
T Consensus 98 f~~~~~q~GT~WYHsH~~~Q~~----~l~G~lIV~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (538)
T TIGR03390 98 IKPEPGDAGSYFYHSHVGFQAV----TAFGPLIVEDCEPPPYKYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEA 173 (538)
T ss_pred EEecCCCCeeeEEecCCchhhh----cceeEEEEccCCccCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCce
Confidence 454 59999999999988863 699999988754221 111222222222112222222111111245689
Q ss_pred EEEcCCCCC------------CCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCe-eEEEEeCCcccCCeeeeEEEeCC
Q 013875 74 YIINSAPFY------------LDTFAMEVESGKTYLLRIINAALNDELFFAIAGHN-FTVVEVDAVYTKPFTTEAILIAP 140 (434)
Q Consensus 74 ~lvNG~~~~------------~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~-~~via~DG~~~~p~~~~~~~l~~ 140 (434)
+||||+... +..+.++|++||+|||||||+|+.+.+.|+|+||+ |+|||+||++++|+.++.|.|++
T Consensus 174 ~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~ 253 (538)
T TIGR03390 174 VLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGG 253 (538)
T ss_pred EEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEcc
Confidence 999999631 12478999999999999999999999999999999 99999999999999999999999
Q ss_pred CCeEEEEEEeCCC-------CCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCC-hhhhhhhhhcc
Q 013875 141 GQTTNVLVQANQK-------PGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASND-SEFALNYNKKL 212 (434)
Q Consensus 141 geR~dv~v~~~~~-------~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-~~~~~~~~~~l 212 (434)
||||||+|++++. +|+||||+.....+ +.....|||+|.++...+.+..+..+.... ..+.......+
T Consensus 254 GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 254 GQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred CCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 9999999999975 38999999865432 234579999998754433332222111110 00000001133
Q ss_pred ccCCCCCCC-CCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccC--CChhhhHHhhhccCCccccCCCCCCC
Q 013875 213 RSLNSPKFP-ADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVM--PQTALLQAHYFNLKGVFKADFPDKPP 289 (434)
Q Consensus 213 ~~l~~~~~p-~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~--p~~pll~~~~~~~~g~~~~~~~~~~p 289 (434)
.++.....+ .+.+..+++++.+.+++.... +. +...|++||.+|.. +..|+|...+.+. + +..++
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~---~~--g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~----~~~~~ 397 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDP---LN--GRVAWLQNGLSWTESVRQTPYLVDIYENG---L----PATPN 397 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccc---cC--CeEEEEECCcccCCCCCCCchHHHHhcCC---C----CcCCC
Confidence 443221111 112345677777766653211 01 35679999999986 6778887654321 0 01010
Q ss_pred CCCCCCCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCC-----CCCCCCccccCCceEEEEecCCcCCCCCCCCCCC
Q 013875 290 KPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL-----TVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYN 364 (434)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~-----~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n 364 (434)
|+ ... ........+.++.++.|++|+|+|+|.... ....||||||||+||||++|.|.|++......+|
T Consensus 398 --~~--~~~--~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~n 471 (538)
T TIGR03390 398 --YT--AAL--ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLE 471 (538)
T ss_pred --cc--ccc--ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhc
Confidence 11 000 000112245568899999999999996421 2578999999999999999999998655445688
Q ss_pred CCCCCccceeEec----------CCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCC
Q 013875 365 LVDPIERNTAAVP----------TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGP 418 (434)
Q Consensus 365 ~~~p~~rDTv~vp----------~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~ 418 (434)
+.||++|||+.|| ++||++|||++||||.|+|||||+||+..||+++|.|.+.+
T Consensus 472 l~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 472 NYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred cCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 8999999999996 78999999999999999999999999999999999987654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=4.2e-55 Score=453.26 Aligned_cols=328 Identities=23% Similarity=0.337 Sum_probs=223.5
Q ss_pred CcccCCCceEEeccCCCcccCCCCCCCcceEEecCChhHH------HHhhhccCcchHHHHHHhhh--------------
Q 013875 2 LKRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKL------SKLLEKTSSLGIDIIYSNLL-------------- 61 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l------~~~~~~~~~~~~~~~~~~~~-------------- 61 (434)
|+..|+||||||||...|++. ||+|+|||.+++...+ ...+.|+....-+.++..+.
T Consensus 132 f~~~~~GTyWYHsH~~~q~~~---GL~G~lIV~~~~~~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~ 208 (587)
T TIGR01480 132 FPVRQSGTYWYHSHSGFQEQA---GLYGPLIIDPAEPDPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVA 208 (587)
T ss_pred EECCCCeeEEEecCchhHhhc---cceEEEEECCCccccCCCCceEEEEeeecccCCHHHHHHhhhcccccccccccchh
Confidence 678899999999999999988 9999999876432111 11122222111111111110
Q ss_pred -------hcc---------------CCCCCC------CCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEE
Q 013875 62 -------KNS---------------FGFLAL------NPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAI 113 (434)
Q Consensus 62 -------~~~---------------~~~~~~------~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i 113 (434)
.+. +..... ...+||||+.. ...+++.+++|++|||||||+|+.+.|+|+|
T Consensus 209 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-~~~~~~~v~~G~rvRLR~INas~~~~f~l~I 287 (587)
T TIGR01480 209 DFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-AGNWTGLFRPGEKVRLRFINGSAMTYFDVRI 287 (587)
T ss_pred hhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-CCCceEEECCCCEEEEEEEecCCCceEEEEE
Confidence 000 000000 12489999953 3356799999999999999999999999999
Q ss_pred cCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCC
Q 013875 114 AGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTL 193 (434)
Q Consensus 114 ~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 193 (434)
+||+|+|||+||++++|+.++.+.|++||||||+|++++. |.|+|++...+. .....++|++.+...++.|.+
T Consensus 288 ~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~-g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~ 360 (587)
T TIGR01480 288 PGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD-DAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPAL 360 (587)
T ss_pred CCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC-ceEEEEEEecCC------CceEEEEEecCCCCCCCCCCC
Confidence 9999999999999999999999999999999999998754 899999976432 234778888875433333333
Q ss_pred CCCC--CCCChhh-h-----------------hh----------------------------------------------
Q 013875 194 AQLP--ASNDSEF-A-----------------LN---------------------------------------------- 207 (434)
Q Consensus 194 p~~p--~~~~~~~-~-----------------~~---------------------------------------------- 207 (434)
++.| ...+... . .+
T Consensus 361 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (587)
T TIGR01480 361 DPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMD 440 (587)
T ss_pred CCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccC
Confidence 2111 0000000 0 00
Q ss_pred --------------hhhccccCCCCCCCCCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhh
Q 013875 208 --------------YNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHY 273 (434)
Q Consensus 208 --------------~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~ 273 (434)
...+|+.+. +...+..+++++.+.+.-.. ..+.|+|||..|..
T Consensus 441 ~~~~~~~~~~~~~~~y~~l~~~~----~~~~~~~p~r~~~~~L~g~m---------~~~~wtiNG~~~~~---------- 497 (587)
T TIGR01480 441 DPGIGLRDNGRRVLTYADLHSLF----PPPDGRAPGREIELHLTGNM---------ERFAWSFDGEAFGL---------- 497 (587)
T ss_pred CCCcccccCCcceeehhhccccc----cccCcCCCCceEEEEEcCCC---------ceeEEEECCccCCC----------
Confidence 000000000 00001123444444332111 34568888876521
Q ss_pred hccCCccccCCCCCCCCCCCCCCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCc
Q 013875 274 FNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGN 353 (434)
Q Consensus 274 ~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 353 (434)
...+.++.|++|+|+|.|.+ .+.||||||||.|+|+..+ |.
T Consensus 498 -----------------------------------~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~ 538 (587)
T TIGR01480 498 -----------------------------------KTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE 538 (587)
T ss_pred -----------------------------------CCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc
Confidence 12367999999999999975 6899999999999998653 22
Q ss_pred CCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEe
Q 013875 354 FDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 354 ~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
.+.+|||+.|+|++++.++|++||||.|+||||++.|++.|||+.|.|.
T Consensus 539 -------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 539 -------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred -------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 1357899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=8.6e-55 Score=447.69 Aligned_cols=328 Identities=18% Similarity=0.200 Sum_probs=211.0
Q ss_pred CcccC-CCceEEeccC----CCcccCCCCCCCcceEEecCChhH--HHHhhhccCcchHHHHHHhhhhccCC--------
Q 013875 2 LKRSK-SKARKWVCHR----TCQMHTQSTGSQGPSFHVLRNVRK--LSKLLEKTSSLGIDIIYSNLLKNSFG-------- 66 (434)
Q Consensus 2 ~~~~~-~Gt~wYH~H~----~~q~~~~~~Gl~G~liv~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 66 (434)
|+..| +||||||||. +.|+.. ||+|+|||.++.... +...+.. .+. .++++|+..+..+
T Consensus 130 f~~~q~aGT~WYH~H~~g~t~~Qv~~---GL~G~lIV~d~~~~~~~lp~~~~~-~d~--~lvlqD~~~~~~g~~~~~~~~ 203 (523)
T PRK10965 130 FTVDQPAATCWFHPHQHGKTGRQVAM---GLAGLVLIEDDESLKLGLPKQWGV-DDI--PVILQDKRFSADGQIDYQLDV 203 (523)
T ss_pred eccCCCCceEEEecCCCCCcHHHHhC---cCeEEEEEcCccccccCCcccCCC-cee--eEEEEeeeeCCCCceeccccc
Confidence 55664 8999999996 688888 999999987765432 1111111 111 1345555442211
Q ss_pred ----CCCCCCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEE-cCCeeEEEEeCCccc-CCeeeeEEEeCC
Q 013875 67 ----FLALNPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KPFTTEAILIAP 140 (434)
Q Consensus 67 ----~~~~~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~~~l~~ 140 (434)
....+|.+||||+. .+.+.++ +++|||||||+|+.+.++|++ +||+|+|||+||+++ +|+.++.|.|+|
T Consensus 204 ~~~~~g~~gd~~lVNG~~----~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 204 MTAAVGWFGDTLLTNGAI----YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred cccccCccCCeEEECCcc----cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 12357999999994 4677775 679999999999999999998 899999999999997 899999999999
Q ss_pred CCeEEEEEEeCCCCCceEEEEeccCCCCCC-CCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCC
Q 013875 141 GQTTNVLVQANQKPGRYFMAARPFNDAPIP-VDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPK 219 (434)
Q Consensus 141 geR~dv~v~~~~~~g~~~l~a~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~ 219 (434)
||||||+|++++. ++|++.+......... ........++++..........+|. .++.+..
T Consensus 279 GeR~dvlv~~~~~-~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~---------------~l~~~~~-- 340 (523)
T PRK10965 279 GERFEVLVDTSDG-KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPD---------------SLASLPA-- 340 (523)
T ss_pred cceEEEEEEcCCC-ceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCCh---------------hhccCCC--
Confidence 9999999999874 7899988654322100 0111234566665432111111111 1111110
Q ss_pred CCCCCCcccceEEEEEecc--C---------CCCCCc------------c-C-------------CC-ce--EEEeecCc
Q 013875 220 FPADVPQKVDRKLFYTIGF--G---------KDSCPT------------C-V-------------NG-TR--LLATLNNI 259 (434)
Q Consensus 220 ~p~~~p~~~~~~~~l~~~~--~---------~~~~~~------------~-~-------------g~-~~--~~~~iN~~ 259 (434)
.+. ......+++.+.+.. . ...... . . +. .. ..|+|||+
T Consensus 341 ~~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~ 419 (523)
T PRK10965 341 LPS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGK 419 (523)
T ss_pred CCc-ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCe
Confidence 000 000112333332210 0 000000 0 0 00 00 01356665
Q ss_pred cccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccc
Q 013875 260 SFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHL 339 (434)
Q Consensus 260 sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~Hl 339 (434)
+|.. ....+.++.|++++|.|.|.+ ..+.|||||
T Consensus 420 ~~~~--------------------------------------------~~~~~~~~~G~~e~w~i~N~~--~~~~Hp~Hl 453 (523)
T PRK10965 420 AFDM--------------------------------------------NKPMFAAKKGQYERWVISGVG--DMMLHPFHI 453 (523)
T ss_pred ECCC--------------------------------------------CCcceecCCCCEEEEEEEeCC--CCCccCeEE
Confidence 5531 112267899999999999975 135899999
Q ss_pred cCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc----CCceeeEEeecchhhHHccceeEEEEe
Q 013875 340 HGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA----DNPGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 340 HG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a----dnpG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
||++||||+++..+ .....+.|||||.|++ +.+.|++++ |++|.|||||||++|||.|||++|.|.
T Consensus 454 Hg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 454 HGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred eCcEEEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 99999999996322 1123468999999988 667766665 467799999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.2e-54 Score=442.72 Aligned_cols=308 Identities=15% Similarity=0.146 Sum_probs=205.4
Q ss_pred cCCCceEEeccCC----CcccCCCCCCCcceEEecCChhH--HHHhhhccCcchHHHHHHhhhhccCC---------CCC
Q 013875 5 SKSKARKWVCHRT----CQMHTQSTGSQGPSFHVLRNVRK--LSKLLEKTSSLGIDIIYSNLLKNSFG---------FLA 69 (434)
Q Consensus 5 ~~~Gt~wYH~H~~----~q~~~~~~Gl~G~liv~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 69 (434)
+++||||||||.. .|+.+ ||+|++||.++.... +...++. .+. .++++|+..+..+ ...
T Consensus 134 ~~aGT~WYH~H~~~~t~~qv~~---GL~G~lII~d~~~~~~~~p~~~~~-~d~--~l~l~D~~~~~~g~~~~~~~~~~g~ 207 (471)
T PRK10883 134 QNAATCWYHANTPNRMAQHVYN---GLAGMWLVEDEVSKSLPIPNHYGV-DDF--PVIIQDKRLDNFGTPEYNEPGSGGF 207 (471)
T ss_pred CCceeeEEccCCCCchhhhHhc---CCeEEEEEeCCcccccCCcccCCC-cce--eEEeeeeeeccCCCccccccccCCc
Confidence 4699999999963 46667 999999987754322 1111111 111 1355555543322 124
Q ss_pred CCCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEE-cCCeeEEEEeCCccc-CCeeeeEEEeCCCCeEEEE
Q 013875 70 LNPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KPFTTEAILIAPGQTTNVL 147 (434)
Q Consensus 70 ~~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~~~l~~geR~dv~ 147 (434)
.+|.+||||+. .+.++|++| +|||||||+|+.+.+.|+| +||+|+|||+||+++ +|+.++++.|+|||||||+
T Consensus 208 ~gd~~lvNG~~----~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 208 VGDTLLVNGVQ----SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred cCCeeEECCcc----CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEE
Confidence 67999999994 478999975 8999999999999999999 899999999998877 8999999999999999999
Q ss_pred EEeCCCCCceEEEEeccCCCCCC----CCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCC
Q 013875 148 VQANQKPGRYFMAARPFNDAPIP----VDNK---TATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKF 220 (434)
Q Consensus 148 v~~~~~~g~~~l~a~~~~~~~~~----~~~~---~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~ 220 (434)
|++++. +.+.|.+.......+. +... ....+++......... .....|. .+.. ..
T Consensus 283 Vd~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~------------~l~~---~~- 344 (471)
T PRK10883 283 VDMSNG-DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-VTDNLPM------------RLLP---DE- 344 (471)
T ss_pred EECCCC-ceEEEECCCccccccccccccCCccccccceeEEEEccccccC-CCCcCCh------------hhcC---CC-
Confidence 999774 5676665321100000 0000 0122333332110000 0000000 1111 00
Q ss_pred CCCCCcccceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCC
Q 013875 221 PADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLT 300 (434)
Q Consensus 221 p~~~p~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 300 (434)
..+....++..+.++. . .|.|||++|...+
T Consensus 345 --~~~~~~~~~~~~~l~~------------~-~~~INg~~~~~~~----------------------------------- 374 (471)
T PRK10883 345 --IMEGSPIRSREISLGD------------D-LPGINGALWDMNR----------------------------------- 374 (471)
T ss_pred --CCCCCCcceEEEEecC------------C-cCccCCcccCCCc-----------------------------------
Confidence 0111223344443321 1 2579998874321
Q ss_pred CCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCc
Q 013875 301 ASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGG 380 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g 380 (434)
..+.+++|++++|+|.|. +.|||||||+.|||++++..... ..+..|||||.|+ +
T Consensus 375 ---------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~~~---------~~~~gwkDTV~v~--~ 429 (471)
T PRK10883 375 ---------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAMPF---------PEDRGWKDTVWVD--G 429 (471)
T ss_pred ---------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCCCC---------ccccCcCcEEEcC--C
Confidence 115689999999999883 58999999999999999632211 1234799999996 4
Q ss_pred EEEEEEEcCCce----eeEEeecchhhHHccceeEEEEec
Q 013875 381 WTAIRFRADNPG----VWFMHCHLELHTGWGLKTAFAVED 416 (434)
Q Consensus 381 ~v~irf~adnpG----~w~~HCHil~H~d~GM~~~~~v~~ 416 (434)
.+.|++++|++| .||||||||+|||.|||++|.|.+
T Consensus 430 ~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 430 QVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred eEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.2e-45 Score=372.62 Aligned_cols=322 Identities=23% Similarity=0.263 Sum_probs=206.2
Q ss_pred CcccCCCceEEeccCCCcccCCCCCCCcceEEecCChhHHHHhhhccCcchHHHHHHh----hh--hccCCCCCCCCeEE
Q 013875 2 LKRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVLRNVRKLSKLLEKTSSLGIDIIYSN----LL--KNSFGFLALNPTYI 75 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~~~~~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~d~~l 75 (434)
|+..++||||||+|...|+.+ ||+|++||++.+...+ . +++......+..+.. .. .... ....++..+
T Consensus 120 f~~~~~gT~wyh~H~~~Q~~~---Gl~G~~II~~~~~~~~-~-~d~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~ 193 (451)
T COG2132 120 FTQDVPGTYWYHPHTHGQVYD---GLAGALIIEDENSEPL-G-VDDEPVILQDDWLDEDGTDLYQEGPAM-GGFPGDTLL 193 (451)
T ss_pred ecCCCCcceEeccCCCchhhc---ccceeEEEeCCCCCCC-C-CCceEEEEEeeeecCCCCccccCCccc-cCCCCCeEE
Confidence 556778999999999889888 9999999888744332 1 111111100000000 00 0111 224568999
Q ss_pred EcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCC
Q 013875 76 INSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPG 155 (434)
Q Consensus 76 vNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g 155 (434)
|||+. .+.+ ..++.+||||++|+++.+.+.+++.+++|+||++||.++.|..++.+.|+||||||+++++... +
T Consensus 194 vnG~~----~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~-~ 267 (451)
T COG2132 194 VNGAI----LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG-G 267 (451)
T ss_pred ECCCc----ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC-C
Confidence 99973 3444 4455679999999998898889999999999999999998899999999999999999999873 7
Q ss_pred ceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCC--CCCCChhhhhhhhhccccCCCCCCCCCCCcccceEEE
Q 013875 156 RYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQL--PASNDSEFALNYNKKLRSLNSPKFPADVPQKVDRKLF 233 (434)
Q Consensus 156 ~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~--p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~ 233 (434)
.+.+++.. ... .....+..........+.+..... ....+.. ......+.....+.+. ...+....
T Consensus 268 ~~~l~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (451)
T COG2132 268 AVTLTALG-EDM-----PDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMA-----DHAPVGLLVTILVEPG-PNRDTDFH 335 (451)
T ss_pred eEEEEecc-ccC-----CceeeeeeccccccccccccccccccCCCcchh-----hccccccchhhcCCCc-ccccccch
Confidence 88888764 110 011222222211111111111000 0000000 0000000000000000 00011111
Q ss_pred EEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccceeeeE
Q 013875 234 YTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSK 313 (434)
Q Consensus 234 l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 313 (434)
+... .....|.+|++.|.. ....+.
T Consensus 336 l~~~-----------~~~~~~~~n~~~~~~--------------------------------------------~~~~~~ 360 (451)
T COG2132 336 LIGG-----------IGGYVWAINGKAFDD--------------------------------------------NRVTLI 360 (451)
T ss_pred hhcc-----------cccccccccCccCCC--------------------------------------------CcCcee
Confidence 1000 022346666665531 123378
Q ss_pred eecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCcee
Q 013875 314 IAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGV 393 (434)
Q Consensus 314 ~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 393 (434)
++.|++++|+|.|.+ .+.|||||||+.|+|++.+ .. .....+.||||+.+.+++.+.++|++|+||.
T Consensus 361 ~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~-~~---------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~ 427 (451)
T COG2132 361 AKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD-AP---------APGAAPGWKDTVLVAPGERLLVRFDADYPGP 427 (451)
T ss_pred ecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC-CC---------cccccCccceEEEeCCCeEEEEEEeCCCCCc
Confidence 899999999999976 5899999999999999997 11 2234568999999999999999999999999
Q ss_pred eEEeecchhhHHccceeEEEEe
Q 013875 394 WFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 394 w~~HCHil~H~d~GM~~~~~v~ 415 (434)
|+||||+++|++.|||..+.|.
T Consensus 428 ~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 428 WMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eEEeccchhHhhcCCeeEEEec
Confidence 9999999999999999999875
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=2.6e-31 Score=229.09 Aligned_cols=107 Identities=42% Similarity=0.782 Sum_probs=95.1
Q ss_pred ccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEE
Q 013875 306 SRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIR 385 (434)
Q Consensus 306 ~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~ir 385 (434)
+.+..++.++.|++|+|+|+|.+ ...|||||||++|+|++++.+.+... ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678899999999999999975 67999999999999999987765432 345678889999999999999999999
Q ss_pred EEcCCceeeEEeecchhhHHccceeEEEEec
Q 013875 386 FRADNPGVWFMHCHLELHTGWGLKTAFAVED 416 (434)
Q Consensus 386 f~adnpG~w~~HCHil~H~d~GM~~~~~v~~ 416 (434)
|++||||.|+|||||++|++.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.94 E-value=4.9e-27 Score=227.94 Aligned_cols=170 Identities=19% Similarity=0.156 Sum_probs=125.2
Q ss_pred CcccCCCceEEeccC----CCcccCCCCCCCcceEEecCChhHHHHhhhccCcchHHHHHHhhhhccCC-----------
Q 013875 2 LKRSKSKARKWVCHR----TCQMHTQSTGSQGPSFHVLRNVRKLSKLLEKTSSLGIDIIYSNLLKNSFG----------- 66 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~----~~q~~~~~~Gl~G~liv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------- 66 (434)
|++.++||||||||. ..|... ||+|+|||.+++... + .+. +.- +++++|..+..+
T Consensus 112 F~~~~~Gty~YH~H~~~~~~~q~~~---Gl~G~liV~~~~~~~--~-~d~--e~~--l~l~d~~~~~~~~~~~~~~~~~~ 181 (311)
T TIGR02376 112 FKATRPGAFVYHCAPPGMVPWHVVS---GMNGAIMVLPREGLP--E-YDK--EYY--IGESDLYTPKDEGEGGAYEDDVA 181 (311)
T ss_pred EEcCCCEEEEEEcCCCCchhHHhhc---CcceEEEeeccCCCc--C-cce--eEE--EeeeeEeccccccccccccchHH
Confidence 678899999999995 457666 999999987654211 1 111 110 122333221100
Q ss_pred --CCCCCCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCe--eeeEEEeCCCC
Q 013875 67 --FLALNPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF--TTEAILIAPGQ 142 (434)
Q Consensus 67 --~~~~~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~--~~~~~~l~~ge 142 (434)
....++.++|||+.+ ...+.+.+++|+++||||||+++.+.+.+++.|+.|++|+.||.++.|. .++++.|+|||
T Consensus 182 ~~~~~~~~~~~iNG~~~-~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~ 260 (311)
T TIGR02376 182 AMRTLTPTHVVFNGAVG-ALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGS 260 (311)
T ss_pred HHhcCCCCEEEECCccC-CCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCc
Confidence 124568999999954 1234679999999999999999999999999999999999999999653 48999999999
Q ss_pred eEEEEEEeCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCC
Q 013875 143 TTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPN 187 (434)
Q Consensus 143 R~dv~v~~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~ 187 (434)
|+||+|++++ +|.|++++..+... ......++|+|.+...
T Consensus 261 R~dv~v~~~~-pG~y~~~~~~~~~~----~~~g~~~~i~~~g~~~ 300 (311)
T TIGR02376 261 AAAALYTFEQ-PGVYAYVDHNLIEA----FEKGAAAQVKVEGAWN 300 (311)
T ss_pred eEEEEEEeCC-CeEEEEECcHHHHH----HhCCCEEEEEECCCCC
Confidence 9999999998 59999998754321 1234789999987543
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=2.4e-25 Score=196.31 Aligned_cols=118 Identities=33% Similarity=0.554 Sum_probs=99.8
Q ss_pred CCCCCCeEEEcCCCC---------CCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEE
Q 013875 67 FLALNPTYIINSAPF---------YLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAIL 137 (434)
Q Consensus 67 ~~~~~d~~lvNG~~~---------~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~ 137 (434)
.++.+|.++|||++. ....+.+.|++|++|||||||+++.+.+.|+|+||+|+|||+||.+++|+.++++.
T Consensus 32 ~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~ 111 (159)
T PF00394_consen 32 MPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLV 111 (159)
T ss_dssp CTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEE
T ss_pred CCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEE
Confidence 467899999999754 13468999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEEeCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcC
Q 013875 138 IAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKG 184 (434)
Q Consensus 138 l~~geR~dv~v~~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~ 184 (434)
|++||||||+|++++++|+|||++.....+..........|+|+|.+
T Consensus 112 l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 112 LAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp E-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999877999999963222222233466999999976
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.64 E-value=1.1e-13 Score=134.55 Aligned_cols=248 Identities=17% Similarity=0.159 Sum_probs=151.6
Q ss_pred CCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCC-CCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEE
Q 013875 71 NPTYIINSAPFYLDTFAMEVESGKTYLLRIINAAL-NDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQ 149 (434)
Q Consensus 71 ~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~ 149 (434)
-+.+++||+. ..|.+++++|+++++++.|... ...+.++++++. +.||... ...|.|||++.+.++
T Consensus 47 ~~~~~~nG~~---pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~ 113 (311)
T TIGR02376 47 YQAMTFDGSV---PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFK 113 (311)
T ss_pred EEEEEECCcc---cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEE
Confidence 3689999984 3589999999999999999863 246778888864 4677542 123899999999999
Q ss_pred eCCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccc
Q 013875 150 ANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVD 229 (434)
Q Consensus 150 ~~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~ 229 (434)
+++ +|.||........... .-.....+.|....... . +. .|..... -+++..... .....
T Consensus 114 ~~~-~Gty~YH~H~~~~~~~-q~~~Gl~G~liV~~~~~--~------~~-~d~e~~l----~l~d~~~~~-----~~~~~ 173 (311)
T TIGR02376 114 ATR-PGAFVYHCAPPGMVPW-HVVSGMNGAIMVLPREG--L------PE-YDKEYYI----GESDLYTPK-----DEGEG 173 (311)
T ss_pred cCC-CEEEEEEcCCCCchhH-HhhcCcceEEEeeccCC--C------cC-cceeEEE----eeeeEeccc-----ccccc
Confidence 976 4999998763210000 00111233343432110 0 00 0100000 000000000 00000
Q ss_pred eEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccce
Q 013875 230 RKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRAT 309 (434)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 309 (434)
... ...... +.+...-..++||+.+.. .
T Consensus 174 ~~~--~~~~~~-----~~~~~~~~~~iNG~~~~~---------------------------------------------~ 201 (311)
T TIGR02376 174 GAY--EDDVAA-----MRTLTPTHVVFNGAVGAL---------------------------------------------T 201 (311)
T ss_pred ccc--cchHHH-----HhcCCCCEEEECCccCCC---------------------------------------------C
Confidence 000 000000 000001134566653210 0
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCC-ccceeEecCCcEEEEEEEc
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPI-ERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~-~rDTv~vp~~g~v~irf~a 388 (434)
..+.++.|++++|.|.|.+ ....+.||++|++|.++... |.+- ..|. ..||+.|.||+...|.+++
T Consensus 202 ~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~~----------~~~~~~~~~~~i~PG~R~dv~v~~ 268 (311)
T TIGR02376 202 GDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKFA----------NPPNRDVETWFIPGGSAAAALYTF 268 (311)
T ss_pred CCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Cccc----------CCCCCCcceEEECCCceEEEEEEe
Confidence 1146788999999999976 34678999999999999984 4321 1122 3699999999999999999
Q ss_pred CCceeeEEeecchhhH-HccceeEEEEec
Q 013875 389 DNPGVWFMHCHLELHT-GWGLKTAFAVED 416 (434)
Q Consensus 389 dnpG~w~~HCHil~H~-d~GM~~~~~v~~ 416 (434)
+.||.|++|||...|. ..||++.|.|+.
T Consensus 269 ~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 269 EQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 9999999999999998 779999998764
No 21
>PLN02604 oxidoreductase
Probab=99.16 E-value=2.4e-10 Score=120.13 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=71.8
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
++++++.|+++++.+.|.. ....|+||+||+.. .+. .-.+. ...-....|+||+..+++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~--~~~DG-----------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT--PWFDG-----------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC--ccccC-----------CCccccCccCCCCeEEEEEEcC
Confidence 3488999999999999963 24689999999941 111 00010 0112345789999999999999
Q ss_pred CceeeEEeecchhhHHccceeEEEEecCC
Q 013875 390 NPGVWFMHCHLELHTGWGLKTAFAVEDGP 418 (434)
Q Consensus 390 npG~w~~HCHil~H~d~GM~~~~~v~~~~ 418 (434)
++|.|.||||...|.+.||++.|.|++++
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998754
No 22
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.02 E-value=4.5e-08 Score=102.73 Aligned_cols=240 Identities=18% Similarity=0.154 Sum_probs=139.4
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEE-EeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..+++||+. ..|.++++.|+++++++.|--.. ...|+.+|....-- ..||.+ .+.+-.|.||+.+...+++
T Consensus 23 ~~~~~NG~~---PGP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~ 94 (539)
T TIGR03389 23 SILTVNGKF---PGPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTI 94 (539)
T ss_pred EEEEECCcc---cCCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEe
Confidence 589999995 46899999999999999998753 44466666432111 268875 3445568999999999998
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
.+.+|+||........ .....+-|-..+...... + .+. .+..... -+.+.. -.........
T Consensus 95 ~~~~GT~WYHsH~~~~------~~Gl~G~lIV~~~~~~~~---~-~~~-~d~e~~l----~l~Dw~----~~~~~~~~~~ 155 (539)
T TIGR03389 95 TGQRGTLWWHAHISWL------RATVYGAIVILPKPGVPY---P-FPK-PDREVPI----ILGEWW----NADVEAVINQ 155 (539)
T ss_pred cCCCeeEEEecCchhh------hccceEEEEEcCCCCCCC---C-CCC-CCceEEE----Eecccc----cCCHHHHHHH
Confidence 6446999998874211 112233333322111100 0 000 0000000 000000 0000000000
Q ss_pred EEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCccccee
Q 013875 231 KLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATR 310 (434)
Q Consensus 231 ~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 310 (434)
. ...+... . ..-...|||+..... ++++ ....
T Consensus 156 -~-~~~~~~~----~----~~d~~liNG~~~~~~----------------------------~~~~----------~~~~ 187 (539)
T TIGR03389 156 -A-NQTGGAP----N----VSDAYTINGHPGPLY----------------------------NCSS----------KDTF 187 (539)
T ss_pred -H-HhcCCCC----C----ccceEEECCCcCCCC----------------------------CCCC----------CCce
Confidence 0 0000000 0 001255676532100 0000 1234
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++++|.|+|.+ ....+-|||+||.|.|++.. |. +..|...|++.|.+|+++.|.+++++
T Consensus 188 ~i~v~~G~~~RlRlINa~--~~~~~~~~idgH~~~VIa~D-G~-----------~~~P~~~~~l~i~~GqRydVlv~a~~ 253 (539)
T TIGR03389 188 KLTVEPGKTYLLRIINAA--LNDELFFAIANHTLTVVEVD-AT-----------YTKPFKTKTIVIGPGQTTNVLLTADQ 253 (539)
T ss_pred EEEECCCCEEEEEEEecc--CCceEEEEECCCeEEEEEeC-Cc-----------ccCceEeCeEEecCCCEEEEEEECCC
Confidence 589999999999999976 34568899999999999995 32 23567789999999999999999976
Q ss_pred -ceeeEEeecc
Q 013875 391 -PGVWFMHCHL 400 (434)
Q Consensus 391 -pG~w~~HCHi 400 (434)
+|.|.++-+.
T Consensus 254 ~~g~y~i~~~~ 264 (539)
T TIGR03389 254 SPGRYFMAARP 264 (539)
T ss_pred CCceEEEEEec
Confidence 7988776543
No 23
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.92 E-value=4.6e-09 Score=87.39 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=68.5
Q ss_pred eeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 309 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 309 ~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
.++++++.|+.|++.+.|.. ..++.+|+||...---...+|.. .. -.-.|.||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~~--------~~-------~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGVP--------GV-------TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGGT--------TT-------SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCcc--------cc-------cceeEEeecceeeeEee
Confidence 46799999999999999964 66889999997421000000100 00 01247889999999999
Q ss_pred CC-ceeeEEeecchhhHHccceeEEEEecC
Q 013875 389 DN-PGVWFMHCHLELHTGWGLKTAFAVEDG 417 (434)
Q Consensus 389 dn-pG~w~~HCHil~H~d~GM~~~~~v~~~ 417 (434)
+. +|.|.||||...|..+||.+.|.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999865
No 24
>PLN02835 oxidoreductase
Probab=98.90 E-value=2.4e-07 Score=96.73 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=131.1
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEE-EEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+. ..|.++++.|+++++++.|--. ....|+.||..+.- -..||.+. .+-.|.||+.+...+++
T Consensus 49 ~~~~~NG~~---PGP~I~~~~GD~v~v~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~ 119 (539)
T PLN02835 49 QVILINGQF---PGPRLDVVTNDNIILNLINKLD-QPFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQT 119 (539)
T ss_pred EEEEECCcC---CCCCEEEECCCEEEEEEEeCCC-CCCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEE
Confidence 479999995 4689999999999999999865 34456667655432 24799653 23578999999999987
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
.+.+|+||..+..... .. ....+-|-.......+ .+ .+ ..++
T Consensus 120 ~~q~GT~WYHsH~~~q----~~-~Gl~G~lIV~~~~~~~---~p-~~-----------------------------~~d~ 161 (539)
T PLN02835 120 KDQIGTFTYFPSTLFH----KA-AGGFGAINVYERPRIP---IP-FP-----------------------------LPDG 161 (539)
T ss_pred CCCCEeEEEEeCccch----hc-CcccceeEEeCCCCCC---cC-CC-----------------------------CCCc
Confidence 5446999999863111 11 1122222221111000 00 00 0011
Q ss_pred EEEEEeccC-CCCCC----c-cCC---CceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCC
Q 013875 231 KLFYTIGFG-KDSCP----T-CVN---GTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTA 301 (434)
Q Consensus 231 ~~~l~~~~~-~~~~~----~-~~g---~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 301 (434)
++.+.++-- ..... . ..+ +-.-...|||+.
T Consensus 162 e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~----------------------------------------- 200 (539)
T PLN02835 162 DFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQT----------------------------------------- 200 (539)
T ss_pred eEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEcccc-----------------------------------------
Confidence 111111000 00000 0 000 000012333321
Q ss_pred CCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcE
Q 013875 302 SLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGW 381 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~ 381 (434)
...+.++.|++++|+|+|.+ .....-|||.||.|.|++..... ..|...|++.|.+|++
T Consensus 201 -------~~~~~v~~G~~yRlRliNa~--~~~~~~f~i~gH~~~VI~~DG~~------------v~p~~~~~l~i~~GqR 259 (539)
T PLN02835 201 -------QSTFSGDQGKTYMFRISNVG--LSTSLNFRIQGHTMKLVEVEGSH------------TIQNIYDSLDVHVGQS 259 (539)
T ss_pred -------CceEEECCCCEEEEEEEEcC--CCccEEEEECCCEEEEEEECCcc------------CCCceeeEEEECcCce
Confidence 12378999999999999987 35578999999999999995322 2345679999999999
Q ss_pred EEEEEEcCC-ceeeEEe
Q 013875 382 TAIRFRADN-PGVWFMH 397 (434)
Q Consensus 382 v~irf~adn-pG~w~~H 397 (434)
..|.++++. +|.|-++
T Consensus 260 ydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 260 VAVLVTLNQSPKDYYIV 276 (539)
T ss_pred EEEEEEcCCCCCcEEEE
Confidence 999999965 6866555
No 25
>PLN02354 copper ion binding / oxidoreductase
Probab=98.79 E-value=5.8e-07 Score=94.10 Aligned_cols=225 Identities=15% Similarity=0.097 Sum_probs=135.5
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEE-EeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- ..|.++++.|+++++++.|.-. ....||.+|....-. ..||.+. .+-.|.||+.+...+++
T Consensus 47 ~~~~iNGq~---PGP~I~~~~GD~v~V~v~N~l~-~~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~ 117 (552)
T PLN02354 47 QVILINGQF---PGPNINSTSNNNIVINVFNNLD-EPFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQP 117 (552)
T ss_pred EEEEECCCC---cCCcEEEeCCCEEEEEEEECCC-CCcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEe
Confidence 589999995 4799999999999999999874 344456666543322 4799652 44579999999999998
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
.+.+|+||..+.... +. .....+-|...+....+ .+ ... .++
T Consensus 118 ~~q~GT~WYHsH~~~----Q~-~~Gl~G~lII~~~~~~~---~p-~~~-----------------------------~d~ 159 (552)
T PLN02354 118 KDQIGSYFYYPSTGM----HR-AAGGFGGLRVNSRLLIP---VP-YAD-----------------------------PED 159 (552)
T ss_pred CCCCcceEEecCccc----ee-cCCccceEEEcCCcCCC---CC-CCC-----------------------------cCc
Confidence 544699999876311 11 11122222222211000 00 000 000
Q ss_pred EEEEEecc-CCCCC--------C-ccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCC
Q 013875 231 KLFYTIGF-GKDSC--------P-TCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLT 300 (434)
Q Consensus 231 ~~~l~~~~-~~~~~--------~-~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 300 (434)
++.+.++- -.... . ...+ ..-...|||+.... +
T Consensus 160 e~~l~l~Dw~~~~~~~~~~~~~~g~~~~-~~d~~liNG~~~~~------------------------------~------ 202 (552)
T PLN02354 160 DYTVLIGDWYTKSHTALKKFLDSGRTLG-RPDGVLINGKSGKG------------------------------D------ 202 (552)
T ss_pred eEEEEeeeeccCCHHHHHHHHhcCCCCC-CCCeEEEeCCcCCC------------------------------C------
Confidence 00110000 00000 0 0000 00123455542100 0
Q ss_pred CCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCc
Q 013875 301 ASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGG 380 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g 380 (434)
......+.++.|++++|+|+|.+ .....-|||.||.|.|++..... ..|..-|++.|.+|+
T Consensus 203 -----~~~~~~~~v~~Gk~yRlRiINa~--~~~~~~f~IdgH~~tVIa~DG~~------------v~p~~~~~l~i~~Gq 263 (552)
T PLN02354 203 -----GKDEPLFTMKPGKTYRYRICNVG--LKSSLNFRIQGHKMKLVEMEGSH------------VLQNDYDSLDVHVGQ 263 (552)
T ss_pred -----CCCceEEEECCCCEEEEEEEecC--CCceEEEEECCceEEEEEeCCcc------------cCCcceeEEEEccCc
Confidence 01234589999999999999987 35678999999999999995322 234557999999999
Q ss_pred EEEEEEEcCC-ceeeEEeec
Q 013875 381 WTAIRFRADN-PGVWFMHCH 399 (434)
Q Consensus 381 ~v~irf~adn-pG~w~~HCH 399 (434)
+..|.+++++ +|.|-+.-.
T Consensus 264 RydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 264 CFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred eEEEEEECCCCCCcEEEEEe
Confidence 9999999975 787766654
No 26
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.78 E-value=5.8e-08 Score=101.87 Aligned_cols=91 Identities=23% Similarity=0.327 Sum_probs=70.4
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcC-CCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNF-DPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~-~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
+.+.++.|+.+++.+.|.. ....+.+|+||... .+. .| +.. | .-....|+||+..+.+|++
T Consensus 32 P~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~----~~~-~~~DG~----------~-~vtq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ----IGT-PWADGT----------A-GVTQCAINPGETFIYNFVV 93 (541)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEEecCcCC----cCC-cccCCC----------C-ccccCCcCCCCEEEEEEEc
Confidence 4488999999999999963 24679999999941 110 11 000 0 0123468999999999999
Q ss_pred CCceeeEEeecchhhHHccceeEEEEecCC
Q 013875 389 DNPGVWFMHCHLELHTGWGLKTAFAVEDGP 418 (434)
Q Consensus 389 dnpG~w~~HCHil~H~d~GM~~~~~v~~~~ 418 (434)
+++|.|.||||...|...||.+.|.|+++.
T Consensus 94 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 94 DRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred CCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 999999999999999999999999998763
No 27
>PLN02792 oxidoreductase
Probab=98.70 E-value=6.9e-07 Score=93.16 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=131.1
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEE-EeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- ..|.|+++.|+++++++.|--. ....|+.||....-- -.||.+. .+-.|.||+.+...+++
T Consensus 36 ~~~~vNGq~---PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 36 RGILINGQF---PGPEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQV 106 (536)
T ss_pred EEEEECCCC---CCCcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEe
Confidence 579999995 4799999999999999999864 344455555433222 2799643 22578999999999998
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEE-EEcCCCCCCCCCCCCCCCC-CChhhhhhhhhccccCCCCCCCCCCCccc
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGIL-QYKGIPNSLLPTLAQLPAS-NDSEFALNYNKKLRSLNSPKFPADVPQKV 228 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail-~y~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~l~~l~~~~~p~~~p~~~ 228 (434)
++.+|+||..+..... ......+-| -+..... +. .. +.. .+... -+.+.. . ......
T Consensus 107 ~~q~GT~WYHsH~~~q-----~~~Gl~G~liI~~~~~~-~~-p~---~~~d~e~~i------~l~Dw~---~--~~~~~~ 165 (536)
T PLN02792 107 KDQVGSYFYFPSLAVQ-----KAAGGYGSLRIYSLPRI-PV-PF---PEPAGDFTF------LIGDWY---R--RNHTTL 165 (536)
T ss_pred CCCccceEEecCcchh-----hhcccccceEEeCCccc-Cc-CC---CcccceeEE------Eecccc---c--CCHHHH
Confidence 6446999999874211 111122222 2221110 00 00 000 00000 000000 0 000000
Q ss_pred ceEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 013875 229 DRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRA 308 (434)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 308 (434)
.. .+..+..... ..-...|||+.. ..
T Consensus 166 ~~--~~~~g~~~~~-------~~d~~liNG~~~---------------------------------------------~~ 191 (536)
T PLN02792 166 KK--ILDGGRKLPL-------MPDGVMINGQGV---------------------------------------------SY 191 (536)
T ss_pred HH--HhhccCcCCC-------CCCEEEEeccCC---------------------------------------------CC
Confidence 00 0000000000 001234554311 01
Q ss_pred eeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 309 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 309 ~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
...+.++.|++++|+|.|.+ .....-|+|.||.|.|++..... ..|...|++.|.+|+++.|.+++
T Consensus 192 ~~~~~v~~Gk~yRlRliNa~--~~~~~~f~i~gH~~tVI~~DG~~------------v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 192 VYSITVDKGKTYRFRISNVG--LQTSLNFEILGHQLKLIEVEGTH------------TVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred cceEEECCCCEEEEEEEEcC--CCceEEEEECCcEEEEEEeCCcc------------CCCcceeEEEEccCceEEEEEEc
Confidence 23488999999999999986 35678999999999999995322 23456799999999999999999
Q ss_pred CC-ceeeEEe
Q 013875 389 DN-PGVWFMH 397 (434)
Q Consensus 389 dn-pG~w~~H 397 (434)
+. +|.|-+.
T Consensus 258 ~~~~g~Y~i~ 267 (536)
T PLN02792 258 DQPPQNYSIV 267 (536)
T ss_pred CCCCceEEEE
Confidence 76 4765544
No 28
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.70 E-value=9.3e-07 Score=92.66 Aligned_cols=236 Identities=14% Similarity=0.140 Sum_probs=135.6
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEE-EEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- ..|.++++.|+++++++.|.-......|+.+|..+.- -..||.+. +.+-.|.||+.+...+++
T Consensus 28 ~~~~~NG~~---PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~ 100 (538)
T TIGR03390 28 YSVVVNGTS---PGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKP 100 (538)
T ss_pred EEEEECCcC---CCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEe
Confidence 489999995 4699999999999999999854445567777765432 24799874 333457899999999887
Q ss_pred C-CCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccc
Q 013875 151 N-QKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVD 229 (434)
Q Consensus 151 ~-~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~ 229 (434)
. ..+|+||....... +.. ...+.|-..+.... .. . .|..... -+.+. .+ .......
T Consensus 101 ~~~q~GT~WYHsH~~~----Q~~--~l~G~lIV~~~~~~---~~----~-~d~e~~l----~l~Dw---~~--~~~~~~~ 157 (538)
T TIGR03390 101 EPGDAGSYFYHSHVGF----QAV--TAFGPLIVEDCEPP---PY----K-YDDERIL----LVSDF---FS--ATDEEIE 157 (538)
T ss_pred cCCCCeeeEEecCCch----hhh--cceeEEEEccCCcc---CC----C-ccCcEEE----EEeCC---CC--CCHHHHH
Confidence 5 24699999877411 111 13333333321110 00 0 0100000 00000 00 0000000
Q ss_pred eEEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccce
Q 013875 230 RKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRAT 309 (434)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 309 (434)
... +....... + ..-...|||+....... . ..++. .+ | ..
T Consensus 158 ~~~-~~~~~~~~------~-~~d~~liNG~~~~~~~~----------------~---------~~~~~---~~---~-~~ 197 (538)
T TIGR03390 158 QGL-LSTPFTWS------G-ETEAVLLNGKSGNKSFY----------------A---------QINPS---GS---C-ML 197 (538)
T ss_pred hhh-hccCCccC------C-CCceEEECCcccccccc----------------c---------cccCC---CC---C-cc
Confidence 000 00000000 0 01135677763211000 0 00000 00 1 13
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCc-eEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYN-FFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
..+.++.|++++|+|.|.+ .....-|+|.||. |+|++.... +..|...|++.|.+|+++.|.+++
T Consensus 198 ~~~~v~~G~~yRlRlINa~--~~~~~~~~idgH~~~~VIa~DG~------------~~~P~~v~~l~l~~GqRydVlv~~ 263 (538)
T TIGR03390 198 PVIDVEPGKTYRLRFIGAT--ALSLISLGIEDHENLTIIEADGS------------YTKPAKIDHLQLGGGQRYSVLFKA 263 (538)
T ss_pred eEEEECCCCEEEEEEEccC--CceEEEEEECCCCeEEEEEeCCC------------CCCceEeCeEEEccCCEEEEEEEC
Confidence 4688999999999999976 2456789999999 999999532 346778899999999999999999
Q ss_pred CCc
Q 013875 389 DNP 391 (434)
Q Consensus 389 dnp 391 (434)
+++
T Consensus 264 ~~~ 266 (538)
T TIGR03390 264 KTE 266 (538)
T ss_pred CCc
Confidence 764
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=98.67 E-value=1.1e-06 Score=91.87 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=127.6
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEE-EeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+. ..|.++++.|+++++++.|--. ....|+.||....-- -.||.+- .+-.|.||+++...+++
T Consensus 46 ~~~~vNG~~---PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~ 116 (545)
T PLN02168 46 QVIVINDMF---PGPLLNATANDVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQV 116 (545)
T ss_pred EEEEECCcC---CCCcEEEECCCEEEEEEEeCCC-CCccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEe
Confidence 478999995 4689999999999999999875 344566666443221 2599653 33578999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
++.+|+||..+.... +. .....+-|-..+....+. ..+. .. .+... -+.+..... ......
T Consensus 117 ~~q~GT~WYHsH~~~----Q~-~~GL~G~lII~~~~~~~~-p~~~-~d-~e~~l------~l~Dw~~~~-----~~~~~~ 177 (545)
T PLN02168 117 KDQIGSYFYFPSLLL----QK-AAGGYGAIRIYNPELVPV-PFPK-PD-EEYDI------LIGDWFYAD-----HTVMRA 177 (545)
T ss_pred CCCCceEEEecChhh----hh-hCcceeEEEEcCCcccCc-CcCc-cc-ceeeE------EEEecCCCC-----HHHHHh
Confidence 644699999986321 11 111233333322111100 0000 00 00000 000000000 000000
Q ss_pred EEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCccccee
Q 013875 231 KLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATR 310 (434)
Q Consensus 231 ~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 310 (434)
.+..+... . ..-...|||+.- ...
T Consensus 178 --~~~~g~~~-~-------~~d~~liNG~~~----------------------------------------------~~~ 201 (545)
T PLN02168 178 --SLDNGHSL-P-------NPDGILFNGRGP----------------------------------------------EET 201 (545)
T ss_pred --hhhcCCCC-C-------CCCEEEEeccCC----------------------------------------------Ccc
Confidence 00000000 0 000133444310 113
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++++|+|.|.+ ....+-|+|.||.|+|++.... +..|..-|++.|.+|++..+.+++++
T Consensus 202 ~~~v~~G~~yRlRiiNa~--~~~~~~~~IdgH~~tVIa~DG~------------~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 202 FFAFEPGKTYRLRISNVG--LKTCLNFRIQDHDMLLVETEGT------------YVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred eEEeCCCCEEEEEEEecc--CCceEEEEECCcEEEEEEECCe------------ECCCceeeEEEEcCCceEEEEEEcCC
Confidence 488999999999999976 2456899999999999998532 23455679999999999999999964
No 30
>PLN02991 oxidoreductase
Probab=98.65 E-value=8.5e-07 Score=92.42 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=131.3
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeE-EEEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFT-VVEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~-via~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- ..|.++++.|+++++++.|.-. ....||.||.... --..||.+. .+-.|.||+.+..-+++
T Consensus 48 ~~~~vNG~~---PGP~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~ 118 (543)
T PLN02991 48 QGILINGKF---PGPDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQV 118 (543)
T ss_pred EEEEEcCCC---CCCcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEe
Confidence 479999995 4689999999999999999874 4445666665532 234799642 24578999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
.+.+|+||..+..... ......+-|-..+....+. | .+. .++
T Consensus 119 ~~q~GT~WYHsH~~~q-----~~~Gl~G~lIV~~~~~~~~---p-~~~-----------------------------~d~ 160 (543)
T PLN02991 119 KDQIGSFYYFPSLGFH-----KAAGGFGAIRISSRPLIPV---P-FPA-----------------------------PAD 160 (543)
T ss_pred CCCCcceEEecCcchh-----hhCCCeeeEEEeCCcccCc---c-ccc-----------------------------ccc
Confidence 6446999999874211 0111233333322111100 0 000 000
Q ss_pred EEEEEeccC-CCCC----C--ccCC--CceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCC
Q 013875 231 KLFYTIGFG-KDSC----P--TCVN--GTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTA 301 (434)
Q Consensus 231 ~~~l~~~~~-~~~~----~--~~~g--~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 301 (434)
++.+.++-- .... . ...+ +..-...|||+.
T Consensus 161 d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~----------------------------------------- 199 (543)
T PLN02991 161 DYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRG----------------------------------------- 199 (543)
T ss_pred eeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCC-----------------------------------------
Confidence 111100000 0000 0 0000 000012344331
Q ss_pred CCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcE
Q 013875 302 SLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGW 381 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~ 381 (434)
....+.++.|++++|+|+|.+. ...+-|+|.||.|+|++.. |. +..|...|++.|.+|++
T Consensus 200 ------~~~~~~v~~G~~yRlRiINa~~--~~~~~~~idgH~~tVIa~D-G~-----------~~~p~~~~~l~i~~GQR 259 (543)
T PLN02991 200 ------SGATLNIEPGKTYRLRISNVGL--QNSLNFRIQNHTMKLVEVE-GT-----------HTIQTPFSSLDVHVGQS 259 (543)
T ss_pred ------CCceEEECCCCEEEEEEEeccC--CeeEEEEECCCEEEEEEeC-Cc-----------cccceeeeEEEEcCCcE
Confidence 1134889999999999999762 4568999999999999985 32 23456789999999999
Q ss_pred EEEEEEcCCc-e-eeEE
Q 013875 382 TAIRFRADNP-G-VWFM 396 (434)
Q Consensus 382 v~irf~adnp-G-~w~~ 396 (434)
..|.+++|++ | .|+.
T Consensus 260 ydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 260 YSVLITADQPAKDYYIV 276 (543)
T ss_pred EEEEEECCCCCCcEEEE
Confidence 9999999774 5 3544
No 31
>PRK10883 FtsI repressor; Provisional
Probab=98.64 E-value=4.2e-06 Score=86.28 Aligned_cols=222 Identities=11% Similarity=0.092 Sum_probs=127.3
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
..+.+||+. ..|.+++++|+++++++.|.-. ....++.+|....- ..||+.-. .|.||++++..+..+
T Consensus 66 ~v~~~ng~~---pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~-~~~~g~~~-------~I~PG~~~~y~f~~~ 133 (471)
T PRK10883 66 SVWGINGRY---LGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPG-PLMGGPAR-------MMSPNADWAPVLPIR 133 (471)
T ss_pred eEEEECCcc---cCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCC-CCCCCccc-------cCCCCCeEEEEEecC
Confidence 568999984 3689999999999999999864 34457777764321 12444322 388999999999888
Q ss_pred CCCCceEEEEeccCCCCCC-CCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 152 QKPGRYFMAARPFNDAPIP-VDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 152 ~~~g~~~l~a~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
+.+|+||.....-.....+ .....+.-|++ .....+ ..+ |...+. .+.
T Consensus 134 ~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~--d~~~~~-~~~---p~~~~~-------------------------~d~ 182 (471)
T PRK10883 134 QNAATCWYHANTPNRMAQHVYNGLAGMWLVE--DEVSKS-LPI---PNHYGV-------------------------DDF 182 (471)
T ss_pred CCceeeEEccCCCCchhhhHhcCCeEEEEEe--CCcccc-cCC---cccCCC-------------------------cce
Confidence 7779999987632111000 01112222322 211100 001 100000 000
Q ss_pred EEEEE-eccCCC----CC-CccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013875 231 KLFYT-IGFGKD----SC-PTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLG 304 (434)
Q Consensus 231 ~~~l~-~~~~~~----~~-~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~ 304 (434)
.+.+. ..++.. .. +...+...-..++||+
T Consensus 183 ~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~--------------------------------------------- 217 (471)
T PRK10883 183 PVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGV--------------------------------------------- 217 (471)
T ss_pred eEEeeeeeeccCCCccccccccCCccCCeeEECCc---------------------------------------------
Confidence 01110 000000 00 0000000001233332
Q ss_pred cccceeeeEeecCCeEEEEEEeCCCCCCCCCCccc-cCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEE
Q 013875 305 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHL-HGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTA 383 (434)
Q Consensus 305 ~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~ 383 (434)
+.+.+.++.+ +++|.|.|.+ .....-++| +||.|+|++...|.+ ..|...|.+.|.||+.+.
T Consensus 218 ---~~p~~~v~~~-~~RlRliNas--~~~~~~l~l~d~~~~~vIa~DGg~~-----------~~P~~~~~l~l~pGeR~d 280 (471)
T PRK10883 218 ---QSPYVEVSRG-WVRLRLLNAS--NARRYQLQMSDGRPLHVIAGDQGFL-----------PAPVSVKQLSLAPGERRE 280 (471)
T ss_pred ---cCCeEEecCC-EEEEEEEEcc--CCceEEEEEcCCCeEEEEEeCCCcc-----------cCCcEeCeEEECCCCeEE
Confidence 1233667654 7899999976 234567777 899999999975543 245567899999999999
Q ss_pred EEEEcCCceeeEEee
Q 013875 384 IRFRADNPGVWFMHC 398 (434)
Q Consensus 384 irf~adnpG~w~~HC 398 (434)
|.+++++.+.+.+++
T Consensus 281 vlVd~~~~~~~~l~~ 295 (471)
T PRK10883 281 ILVDMSNGDEVSITA 295 (471)
T ss_pred EEEECCCCceEEEEC
Confidence 999998877888877
No 32
>PLN02191 L-ascorbate oxidase
Probab=98.63 E-value=4.9e-06 Score=87.75 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=134.5
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEE-EEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+. ..|.++++.|+++++++.|--......|+.||....= -..||.+- +..-.|.||+.+...+++
T Consensus 43 ~v~~vNg~~---pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 43 AVMTVNGQF---PGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTV 115 (574)
T ss_pred eEEEECCcC---CCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEEC
Confidence 589999995 3699999999999999999865455667777765321 12577762 333568999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
++ +|+||........ ......+.|-..+....+.+ ...|..... -+.+. -.. ..+. .
T Consensus 116 ~~-~GT~wYHsH~~~q-----~~~Gl~G~liV~~~~~~~~~------~~~d~e~~l----~l~Dw---~~~-~~~~---~ 172 (574)
T PLN02191 116 EK-PGTHFYHGHYGMQ-----RSAGLYGSLIVDVAKGPKER------LRYDGEFNL----LLSDW---WHE-SIPS---Q 172 (574)
T ss_pred CC-CeEEEEeeCcHHH-----HhCCCEEEEEEccCCCCCCC------CCCCeeEEE----eeecc---ccC-ChHH---H
Confidence 87 4999999863111 11122333333221111000 000100000 00000 000 0000 0
Q ss_pred EEEEEe-ccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCcccce
Q 013875 231 KLFYTI-GFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRAT 309 (434)
Q Consensus 231 ~~~l~~-~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 309 (434)
...+.. ...... ..-...|||+-...-... . . ..++. ......+..++ .+.
T Consensus 173 ~~~~~~~~~~~~~-------~~d~~liNG~g~~~~~~~---~-~-~~~~~------~~~~~~~~~n~----------~~~ 224 (574)
T PLN02191 173 ELGLSSKPMRWIG-------EAQSILINGRGQFNCSLA---A-Q-FSNGT------ELPMCTFKEGD----------QCA 224 (574)
T ss_pred HHhhccCCCCcCC-------CCCceEECCCCCCCCccc---c-c-ccCCc------ccccceeccCC----------CCC
Confidence 000000 000000 001134555421000000 0 0 00000 00000000011 122
Q ss_pred -eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 310 -RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 310 -~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
..+.++.|++++|+|+|.+ ....+-|+|.||+|.|++.... +..|..-|++.|.+|++..|.+++
T Consensus 225 p~~~~v~~G~~yRlRiINa~--~~~~~~~~idgH~~tVIa~DG~------------~v~P~~v~~l~i~~GqRydVlV~a 290 (574)
T PLN02191 225 PQTLRVEPNKTYRIRLASTT--ALASLNLAVQGHKLVVVEADGN------------YITPFTTDDIDIYSGESYSVLLTT 290 (574)
T ss_pred ceEEEEcCCCEEEEEEEecC--CceeEEEEECCCeEEEEEcCCe------------eccceEeeeEEEcCCCeEEEEEEC
Confidence 2589999999999999976 3567889999999999998522 235677899999999999999999
Q ss_pred CCc
Q 013875 389 DNP 391 (434)
Q Consensus 389 dnp 391 (434)
+.+
T Consensus 291 ~~~ 293 (574)
T PLN02191 291 DQD 293 (574)
T ss_pred CCC
Confidence 764
No 33
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.57 E-value=7.8e-06 Score=85.99 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=136.3
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEE-EeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- ..|.++++.|+++++++.|--. ....||.||..+.-- -.||.+ . .+-.|.||+++..-+++
T Consensus 49 ~vi~vNGq~---PGPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~ 119 (596)
T PLN00044 49 EAIGINGQF---PGPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQV 119 (596)
T ss_pred EEEEEcCcC---CCCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEe
Confidence 479999995 4799999999999999999864 455677777654432 489964 2 44679999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
++.+|+||..+..... ......+-|...+....+.| .+ .+...+... -+.+.-. ........
T Consensus 120 ~dq~GT~WYHsH~~~Q-----~~~Gl~GalII~~~~~~~~P-~~-~~~~~e~~i------~l~DW~~-----~~~~~~~~ 181 (596)
T PLN00044 120 KDQVGSFFYAPSTALH-----RAAGGYGAITINNRDVIPIP-FG-FPDGGDITL------FIADWYA-----RDHRALRR 181 (596)
T ss_pred CCCCceeEeeccchhh-----hhCcCeeEEEEcCccccccc-cc-CCcccceEE------Eeccccc-----CCHHHHHH
Confidence 6446999999863211 11123333333321111100 00 000000000 0000000 00000000
Q ss_pred EEEEEeccCCCCCCccCCCceEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCCCCCCCccccee
Q 013875 231 KLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATR 310 (434)
Q Consensus 231 ~~~l~~~~~~~~~~~~~g~~~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 310 (434)
.+..+. ... ..-...|||+.- +..+ +...+ + .....
T Consensus 182 --~l~~g~-~~~-------~~d~~lING~g~------------------~~~n------------~~~~~-~---~~~~~ 217 (596)
T PLN00044 182 --ALDAGD-LLG-------APDGVLINAFGP------------------YQYN------------DSLVP-P---GITYE 217 (596)
T ss_pred --HHhcCC-CCC-------CCCceEEcccCc------------------cccC------------Ccccc-C---CCccc
Confidence 000000 000 000123444310 0000 00000 0 01123
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++++|+|+|.+ ....--|+|-||+|.|++.. |. +..|..-|++.|.+|+++.+.++++.
T Consensus 218 ~i~V~~Gk~yRlRiINaa--~~~~~~fsIdgH~mtVIa~D-G~-----------~v~P~~vd~i~I~~GQRydVLV~a~q 283 (596)
T PLN00044 218 RINVDPGKTYRFRVHNVG--VATSLNFRIQGHNLLLVEAE-GS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQ 283 (596)
T ss_pred eEEECCCCEEEEEEEEcc--CCceEEEEECCCEEEEEEeC-Cc-----------ccCceeeeeEEEcCCceEEEEEECCC
Confidence 689999999999999976 35677899999999999995 32 24567789999999999999999987
Q ss_pred c-e--eeE
Q 013875 391 P-G--VWF 395 (434)
Q Consensus 391 p-G--~w~ 395 (434)
+ | .|+
T Consensus 284 ~~~~~Y~i 291 (596)
T PLN00044 284 NASTDYYV 291 (596)
T ss_pred CCCCceEE
Confidence 5 5 476
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.48 E-value=5.2e-07 Score=94.87 Aligned_cols=85 Identities=12% Similarity=0.215 Sum_probs=70.1
Q ss_pred eEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 73 TYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 73 ~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
.++|||+.+ .....+.++.|+++|||++|.+. ..+.|+++||.|.+++.||.+. ..-+++.|.|||++++.|++++
T Consensus 487 ~wtiNG~~~-~~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~~--~~~dTv~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 487 AWSFDGEAF-GLKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEFQ--VRKHTVDVPPGGKRSFRVTADA 562 (587)
T ss_pred EEEECCccC-CCCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCccc--ccCCceeeCCCCEEEEEEECCC
Confidence 489999975 22346889999999999999775 5677999999999998888632 2237799999999999999997
Q ss_pred CCCceEEEEe
Q 013875 153 KPGRYFMAAR 162 (434)
Q Consensus 153 ~~g~~~l~a~ 162 (434)
+ |.|++.-.
T Consensus 563 p-G~w~~HCH 571 (587)
T TIGR01480 563 L-GRWAYHCH 571 (587)
T ss_pred C-eEEEEcCC
Confidence 5 99998754
No 35
>PRK10965 multicopper oxidase; Provisional
Probab=98.39 E-value=1.2e-06 Score=91.14 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=71.2
Q ss_pred EEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCC---eeeeEEEeCCCCeEEEEEEe
Q 013875 74 YIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKP---FTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 74 ~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p---~~~~~~~l~~geR~dv~v~~ 150 (434)
++|||+.+....+.++++.|++.+|+|+|.+....+.|||+|+.|+|++.||.+..+ .+.|++.+.+ +++++++++
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f 492 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKF 492 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEe
Confidence 489999763335667899999999999999976678899999999999999998753 4569999976 889999999
Q ss_pred CCC---CCceEEEEe
Q 013875 151 NQK---PGRYFMAAR 162 (434)
Q Consensus 151 ~~~---~g~~~l~a~ 162 (434)
+.. +|.|-+.-.
T Consensus 493 ~~~~~~~g~~~~HCH 507 (523)
T PRK10965 493 DHDAPKEHAYMAHCH 507 (523)
T ss_pred cCCCCCCCCEEEEeC
Confidence 853 356655544
No 36
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.37 E-value=4.4e-06 Score=71.56 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=68.5
Q ss_pred CceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCccc-----------CCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 84 DTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-----------KPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 84 ~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~-----------~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
....+.++.|++++|+|+|.+.. .+.|+++|++|+|++.++... .|...|++.+.+|++..+.++++.
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 46789999999999999998765 777999999999999999883 678899999999999999999985
Q ss_pred CCCceEEEEe
Q 013875 153 KPGRYFMAAR 162 (434)
Q Consensus 153 ~~g~~~l~a~ 162 (434)
+|.|.+.-.
T Consensus 111 -~G~w~~HCH 119 (138)
T PF07731_consen 111 -PGPWLFHCH 119 (138)
T ss_dssp -TEEEEEEES
T ss_pred -ceEEEEEEc
Confidence 599888754
No 37
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.30 E-value=2.4e-06 Score=75.21 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=77.1
Q ss_pred eeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEc
Q 013875 309 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 388 (434)
Q Consensus 309 ~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 388 (434)
.+.+.++.|++++|.|.|.+ ....+.|+|.||.|+|++..... ..|...|++.|.+|+.+.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEEe
Confidence 45689999999999999976 35679999999999999995222 23778899999999999999999
Q ss_pred CC-ceeeEEee----cchhhHHccceeEEEEe
Q 013875 389 DN-PGVWFMHC----HLELHTGWGLKTAFAVE 415 (434)
Q Consensus 389 dn-pG~w~~HC----Hil~H~d~GM~~~~~v~ 415 (434)
+. +|.|.++| +...+...|+..-+++-
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 87 99999999 66777888888877653
No 38
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.28 E-value=4.9e-06 Score=72.01 Aligned_cols=90 Identities=19% Similarity=0.300 Sum_probs=58.6
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCC--CCCCCCCCCCCCCCccceeEecC---C--cEE
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFD--PVKYPANYNLVDPIERNTAAVPT---G--GWT 382 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~--~~~~~~~~n~~~p~~rDTv~vp~---~--g~v 382 (434)
+.+.++.|++|++++.|.+ .+..|.|-||.+.- .+. +..+. .|..-..-.+|+ | ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~--------~~~~~p~mdG------~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGP--------PYPYMPGMDG------LGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCC--------ccccccccCC------CCccccCcccCCCCCCcccee
Confidence 5589999999999999975 23556666653211 110 00000 011111112222 2 246
Q ss_pred EEEEEcCCceeeEEeecchhhHHccceeEEEEe
Q 013875 383 AIRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 383 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
.+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 889999999999999999999999999999874
No 39
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.00071 Score=70.72 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=137.7
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCee-EEEEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNF-TVVEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~-~via~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..++|||+- .-|.+.++.|+++.++++|-. ...+.|+.+|-.. +---.||.+ +++=.|.|||.|---+++
T Consensus 48 ~vi~iNG~f---PGP~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~-----~TqCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 48 QVITINGQF---PGPTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVY-----ITQCPIQPGENFTYRFTV 118 (563)
T ss_pred eeEeecCCC---CCCeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCc-----cccCCcCCCCeEEEEEEe
Confidence 478999994 368999999999999999995 4677788887542 333459943 344457999999999999
Q ss_pred CCCCCceEEEEeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhhhhhhhccccCCCCCCCCCCCcccce
Q 013875 151 NQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDR 230 (434)
Q Consensus 151 ~~~~g~~~l~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 230 (434)
++..|+||-.+...... .....+-|........+ .| .+ .+++
T Consensus 119 ~~q~GT~~yh~h~~~~R-----a~G~~G~liI~~~~~~p---~p-f~-----------------------------~pd~ 160 (563)
T KOG1263|consen 119 KDQIGTLWYHSHVSWQR-----ATGVFGALIINPRPGLP---VP-FP-----------------------------KPDK 160 (563)
T ss_pred CCcceeEEEeecccccc-----ccCceeEEEEcCCccCC---CC-CC-----------------------------CCCc
Confidence 96679999988743211 12134444443211110 00 00 1122
Q ss_pred EEEEEeccCCCC-CC---------ccCCCc-eEEEeecCccccCCChhhhHHhhhccCCccccCCCCCCCCCCCCCCCCC
Q 013875 231 KLFYTIGFGKDS-CP---------TCVNGT-RLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPL 299 (434)
Q Consensus 231 ~~~l~~~~~~~~-~~---------~~~g~~-~~~~~iN~~sf~~p~~pll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 299 (434)
++.+-++--... .. ....+. .-...|||++
T Consensus 161 E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~--------------------------------------- 201 (563)
T KOG1263|consen 161 EFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRS--------------------------------------- 201 (563)
T ss_pred eeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCC---------------------------------------
Confidence 222221100000 00 000000 0012344432
Q ss_pred CCCCCcccceeeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCC
Q 013875 300 TASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTG 379 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~ 379 (434)
.....|...+.++.|+++.|+|.|.++. ...+ |.|-||...||+.+ |.+ ..|.--|++.|-+|
T Consensus 202 ---g~~~~~~~~l~v~pGktY~lRiiN~g~~-~~l~-F~I~~H~ltvVe~D-g~y-----------~~p~~~~~l~i~~G 264 (563)
T KOG1263|consen 202 ---GFLYNCTPTLTVEPGKTYRLRIINAGLN-TSLN-FSIANHQLTVVEVD-GAY-----------TKPFTTDSLDIHPG 264 (563)
T ss_pred ---CcccCceeEEEEcCCCEEEEEEEccccc-cceE-EEECCeEEEEEEec-ceE-----------EeeeeeceEEEcCC
Confidence 0112346779999999999999998742 3444 99999999999985 322 34556799999999
Q ss_pred cEEEEEEEcCCc-e-eeEEee
Q 013875 380 GWTAIRFRADNP-G-VWFMHC 398 (434)
Q Consensus 380 g~v~irf~adnp-G-~w~~HC 398 (434)
+...+..+||++ + .|+-=|
T Consensus 265 Q~~~vLvtadq~~~~Y~i~~~ 285 (563)
T KOG1263|consen 265 QTYSVLLTADQSPGDYYIAAS 285 (563)
T ss_pred cEEEEEEeCCCCCCcEEEEEE
Confidence 999999999765 4 355444
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.73 E-value=0.00012 Score=58.92 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=57.1
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++|+|+ |.+ ...|-+.++.-.+.. +... .......+++.+.||+...+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPA-----GVKE---------LAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCcc-----chhh---------hcccccccccccCCCCEEEEEeCC--
Confidence 3889999999887 543 467777765432111 1000 011123467888999998886665
Q ss_pred ceeeEEeecchhhHHccceeEEEEe
Q 013875 391 PGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 391 pG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
+|.|.|||- -|..+||.+.+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 41
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.43 E-value=0.00067 Score=70.00 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCccc---CCeeeeEEEeCCCCeEEEEE
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT---KPFTTEAILIAPGQTTNVLV 148 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~---~p~~~~~~~l~~geR~dv~v 148 (434)
..+.+||+........+.++.|+++||++.|-+. ..+.|+++|+.|+|++.| ... .+...|++.+.+|+|..+.+
T Consensus 343 ~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~ 420 (451)
T COG2132 343 YVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRF 420 (451)
T ss_pred ccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEE
Confidence 5688999876223567889999999999999997 677799999999999999 332 45677999999999999999
Q ss_pred EeCCCCCceEEEEe
Q 013875 149 QANQKPGRYFMAAR 162 (434)
Q Consensus 149 ~~~~~~g~~~l~a~ 162 (434)
+++.+ |.|.+.-.
T Consensus 421 ~a~~~-g~~~~HCH 433 (451)
T COG2132 421 DADYP-GPWMFHCH 433 (451)
T ss_pred eCCCC-CceEEecc
Confidence 99876 77766544
No 42
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.41 E-value=0.00069 Score=57.05 Aligned_cols=59 Identities=19% Similarity=0.460 Sum_probs=47.9
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|+.|+|++.|.+ +.+|.+-++++.+ ...|+||+..+++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 388999999999999975 5677766665411 345788999999999999
Q ss_pred ceeeEEeecc
Q 013875 391 PGVWFMHCHL 400 (434)
Q Consensus 391 pG~w~~HCHi 400 (434)
||.|.|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999964
No 43
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.30 E-value=0.00048 Score=57.21 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEE-EEeCCcccCCeeeeEEEeCCCCeEEEEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQTTNVLVQA 150 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~~~l~~geR~dv~v~~ 150 (434)
..+++||+. ..|.|+++.|+++++++.|.. .....|+.+|....- -..||.+-.+ .-.|.||+++...+++
T Consensus 15 ~~~~~ng~~---pGPtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 15 KVWTYNGQF---PGPTIRVREGDTVRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEETTBS---SEEEEEEETTEEEEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEEEEEEE
T ss_pred EEEEECCCC---CCCEEEEEcCCeeEEEEEecc-ccccccccceeeeeeeeecCCccccc----ceeEEeecceeeeEee
Confidence 589999995 478999999999999999998 456668888854221 1267765422 2348999999999999
Q ss_pred CCCCCceEEEEec
Q 013875 151 NQKPGRYFMAARP 163 (434)
Q Consensus 151 ~~~~g~~~l~a~~ 163 (434)
++.+|.||.....
T Consensus 87 ~~~~Gt~wYH~H~ 99 (117)
T PF07732_consen 87 NQQAGTYWYHSHV 99 (117)
T ss_dssp SSCSEEEEEEECS
T ss_pred eccccceeEeeCC
Confidence 9967999998764
No 44
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.08 E-value=0.0022 Score=51.60 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=53.5
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++|.|+..+ ...|.+.+ ...+ +....+.... +..-.+..+.+|+...+.|. .
T Consensus 18 ~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~ 76 (99)
T PF00127_consen 18 EITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT--K 76 (99)
T ss_dssp EEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--S
T ss_pred EEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC--C
Confidence 4889999999987653 34565543 2211 1000000000 01115667788888777776 9
Q ss_pred ceeeEEeecchhhHHccceeEEEEe
Q 013875 391 PGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 391 pG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
+|.|.|+|- - |...||-+.+.|+
T Consensus 77 ~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 77 PGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CeEEEEEcC-C-CcccCCEEEEEEC
Confidence 999999999 5 9999999999884
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.83 E-value=0.0046 Score=64.77 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=59.7
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|+.|.|.|.|.+...+..|-|-|-++.. -+.+.||....+.|++|.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 3678999999999999643336778777754421 124557889999999999
Q ss_pred ceeeEEeecchhhH-HccceeEEEEec
Q 013875 391 PGVWFMHCHLELHT-GWGLKTAFAVED 416 (434)
Q Consensus 391 pG~w~~HCHil~H~-d~GM~~~~~v~~ 416 (434)
||.|.+||...-|. +.+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999985553 459999998864
No 46
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.41 E-value=0.012 Score=47.75 Aligned_cols=61 Identities=15% Similarity=0.354 Sum_probs=40.6
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|+.+.+++.|.+ ...|-|.+-+ . +. ...|++|+..++.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~-------~--------------------~~-~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND---SRPHEFVIPD-------L--------------------GI-SKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-S---SS-EEEEEGG-------G--------------------TE-EEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECC---CCcEEEEECC-------C--------------------ce-EEEECCCCEEEEEEcCCC
Confidence 489999999999999975 3444444433 1 12 367889999999999999
Q ss_pred ceeeEEeecchh
Q 013875 391 PGVWFMHCHLEL 402 (434)
Q Consensus 391 pG~w~~HCHil~ 402 (434)
||.|-|+|-+-.
T Consensus 85 ~G~y~~~C~~~~ 96 (104)
T PF13473_consen 85 PGEYEFYCTMHP 96 (104)
T ss_dssp -EEEEEB-SSS-
T ss_pred CEEEEEEcCCCC
Confidence 999999999544
No 47
>PRK02710 plastocyanin; Provisional
Probab=96.32 E-value=0.018 Score=48.00 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=49.9
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|++|+|+ |.+ ...|.+.+.+.. .+. .+| ..+.+|+...+.|.. |
T Consensus 49 i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~---------~~~--------------~~~-~~~~pg~t~~~tF~~--~ 97 (119)
T PRK02710 49 LTIKAGDTVKWV--NNK---LAPHNAVFDGAK---------ELS--------------HKD-LAFAPGESWEETFSE--A 97 (119)
T ss_pred EEEcCCCEEEEE--ECC---CCCceEEecCCc---------ccc--------------ccc-cccCCCCEEEEEecC--C
Confidence 789999999885 543 457877654221 000 111 346777777766665 9
Q ss_pred eeeEEeecchhhHHccceeEEEEe
Q 013875 392 GVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 392 G~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
|.|.|+|= -|...||-+.+.|+
T Consensus 98 G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 98 GTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEEEcC--CCccCCcEEEEEEC
Confidence 99999997 79999999999874
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.12 E-value=0.025 Score=47.73 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=51.6
Q ss_pred EEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCC
Q 013875 75 IINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKP 154 (434)
Q Consensus 75 lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~ 154 (434)
-.||. -.+..++|++|++++|++.|.+. ..+.+.++++. -...|.|||+..+-++++++
T Consensus 53 a~n~~---~~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adKp- 111 (135)
T TIGR03096 53 AFNVL---NEPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADKA- 111 (135)
T ss_pred eeeeE---EcCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCCC-
Confidence 33555 24788999999999999999886 45556666542 15678999999999999986
Q ss_pred CceEEEEe
Q 013875 155 GRYFMAAR 162 (434)
Q Consensus 155 g~~~l~a~ 162 (434)
|.|+..-.
T Consensus 112 G~Y~y~C~ 119 (135)
T TIGR03096 112 GAFTIWCQ 119 (135)
T ss_pred EEEEEeCC
Confidence 99987643
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.98 E-value=0.037 Score=47.89 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCC--eeEE-EEeCCcccCCeeeeEEEe---CCCCe
Q 013875 70 LNPTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGH--NFTV-VEVDAVYTKPFTTEAILI---APGQT 143 (434)
Q Consensus 70 ~~d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~--~~~v-ia~DG~~~~p~~~~~~~l---~~geR 143 (434)
..+.|.|||.. .|.+++++|+++++++.|......+.+.|+.+ .+.. -+.||.+.... .-.+ .+|+.
T Consensus 40 ~~~~f~~~~~~----~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~---~~i~p~~~~g~~ 112 (148)
T TIGR03095 40 SMYSFEIHDLK----NPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAG---TGFLPPPKSGKF 112 (148)
T ss_pred CceeEEecCCC----CCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcccc---CcccCCCCCCcc
Confidence 34789999984 59999999999999999987533444555432 2211 13566542111 1111 23544
Q ss_pred --EEEEEEeCCCCCceEEEEe
Q 013875 144 --TNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 144 --~dv~v~~~~~~g~~~l~a~ 162 (434)
.++.+++++ +|.||..-.
T Consensus 113 ~~~~~tf~f~~-aGtywyhC~ 132 (148)
T TIGR03095 113 GYTDFTYHFST-AGTYWYLCT 132 (148)
T ss_pred ceeEEEEECCC-CeEEEEEcC
Confidence 588899886 499999843
No 50
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.035 Score=47.59 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|++++.++.|.. ..-|=|=+= ++....+ .+.-.. ...-..---..++.|.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~--~~~~~~---~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE--HVTHMI---LADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCcc---cceEEEecc---Cccccch--hHHHhh---hCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 67889999999999965 334444332 1111111 110000 000001123579999999999999999999
Q ss_pred eeeEEeecchhhHHccceeEEEEe
Q 013875 392 GVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 392 G~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
|.+-|-|=|-+|-+.||-+.|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999874
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.26 E-value=0.077 Score=43.84 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecCCCCC
Q 013875 378 TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPD 421 (434)
Q Consensus 378 ~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~~~~~ 421 (434)
+++. +.++++.+|.+-|+|= -|...||-+.+.|.++..+.
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANL 93 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCH
Confidence 3444 4455578999999998 99999999999998765433
No 52
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.23 E-value=0.11 Score=42.06 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=40.9
Q ss_pred CceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEE
Q 013875 84 DTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAA 161 (434)
Q Consensus 84 ~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a 161 (434)
.+..+++++|+.++|.+.|.+... +.+.+++ ... ...|.||+...+.|.+.++ |+|.+.-
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~---------------~~~-~~~l~~g~~~~~~f~~~~~-G~y~~~C 92 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPD---------------LGI-SKVLPPGETATVTFTPLKP-GEYEFYC 92 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGG---------------GTE-EEEE-TT-EEEEEEEE-S--EEEEEB-
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECC---------------Cce-EEEECCCCEEEEEEcCCCC-EEEEEEc
Confidence 467899999999999999998654 6666665 112 2678999999999977765 9997764
No 53
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.90 E-value=0.18 Score=38.97 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=45.2
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.+..|++|.| .|.+ ...|-.++..-.+ +..+ +. ...+.++.. ++++++.
T Consensus 12 ~i~v~~GdtVt~--~N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~--~~~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTW--INRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQA--YSLTFTE 62 (83)
T ss_pred EEEECCCCEEEE--EECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCE--EEEECCC
Confidence 488999999998 4643 4678887653211 1100 11 112344444 4456788
Q ss_pred ceeeEEeecchhhHHccceeEEEEe
Q 013875 391 PGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 391 pG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
||.|.|||=+ |- +|-+.+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999985 54 598888774
No 54
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.64 E-value=0.61 Score=38.48 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=46.8
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|++|.|+-.+. ...|-. ...+.+.|+. ......+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV---------~s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNV---------VSDGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEE---------EECCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 37899999999975331 234443 2222223321 111233455555554 78
Q ss_pred ceeeEEeecchhhHHccceeEEEEe
Q 013875 391 PGVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 391 pG~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
||.|.|+|= .|...||-+.+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999997 89999999999874
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.58 E-value=0.61 Score=41.85 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEE--cCC---eeEEEEeCCccc-C----CeeeeEEEeCCC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAI--AGH---NFTVVEVDAVYT-K----PFTTEAILIAPG 141 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i--~g~---~~~via~DG~~~-~----p~~~~~~~l~~g 141 (434)
+.+-+||... ...++-|.+|-++.++++|.+.. .+.+-| .+- ....++.||.-+ . +-....--|.+|
T Consensus 74 ~~~nfnGts~--G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G 150 (196)
T PF06525_consen 74 NPFNFNGTSN--GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSG 150 (196)
T ss_pred CceeeecccC--CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCC
Confidence 5788899864 67899999999999999998754 444443 221 245778888655 1 211122345799
Q ss_pred CeEEEEEEeCCCCCceEEE
Q 013875 142 QTTNVLVQANQKPGRYFMA 160 (434)
Q Consensus 142 eR~dv~v~~~~~~g~~~l~ 160 (434)
|++...+..-. +|.|||.
T Consensus 151 ~s~~~~~~~l~-aG~Ywlv 168 (196)
T PF06525_consen 151 QSASGVYNDLP-AGYYWLV 168 (196)
T ss_pred ceeeEEEccCC-CceEEEE
Confidence 99998775433 5999997
No 56
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=92.15 E-value=0.48 Score=37.86 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=41.2
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccC-CeeeeEEEeCCCCeEEEEEEeCCCCCceEEEE
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTK-PFTTEAILIAPGQTTNVLVQANQKPGRYFMAA 161 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~-p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a 161 (434)
+..++|++|++++|. |.+. ..+.+.++...+-.-+. ... ....+.+.+.||+++++-++. +|.|.+.-
T Consensus 16 P~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C 84 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVPAGVK---ELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYC 84 (99)
T ss_pred CCEEEECCCCEEEEE--ECCC-CCceEEECCCCCccchh---hhcccccccccccCCCCEEEEEeCC---CEEEEEEc
Confidence 467999999987665 7653 44555554322111000 011 122356789999999997664 59987764
No 57
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.88 E-value=2.3 Score=37.56 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=59.5
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCC-cCCCC--CCCCCCCC--CCCCccceeEecCCcEEEE
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIG-NFDPV--KYPANYNL--VDPIERNTAAVPTGGWTAI 384 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~--~~~~~~n~--~~p~~rDTv~vp~~g~v~i 384 (434)
..+-++.|-.|.++|.|.+ .++ |.+-|+..+.. +..+. .+.+.+++ ..+.--..=-+.+|.....
T Consensus 85 mtIyiPaGw~V~V~f~N~e---~~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYE---SLP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred eEEEEeCCCEEEEEEEcCC---CCC-------ccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 4588999999999999975 344 45566654321 10000 00011110 1111111112334556666
Q ss_pred EEEcCCceeeEEeecchhhHHccceeEEEEec
Q 013875 385 RFRADNPGVWFMHCHLELHTGWGLKTAFAVED 416 (434)
Q Consensus 385 rf~adnpG~w~~HCHil~H~d~GM~~~~~v~~ 416 (434)
-+..-.||.+.+=|=+.-|.+.||-+.+.|-.
T Consensus 155 ~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 155 WWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred EeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 67777899999999999999999999998754
No 58
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.13 E-value=2.8 Score=37.71 Aligned_cols=98 Identities=10% Similarity=0.145 Sum_probs=59.7
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCC-C--CCCCCC--CCCCCCccceeEecCCcEEEE
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDP-V--KYPANY--NLVDPIERNTAAVPTGGWTAI 384 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~-~--~~~~~~--n~~~p~~rDTv~vp~~g~v~i 384 (434)
..+.++.|-.|.+++.|.+ .+.| .|-|+..+..-... . .|.+-+ -...+.--..--+.+|.....
T Consensus 86 m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~ 155 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASG 155 (196)
T ss_pred EEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeE
Confidence 4478999999999999975 4444 67777554211100 0 000000 000110001112335555555
Q ss_pred EEEcCCceeeEEeecchhhHHccceeEEEEecC
Q 013875 385 RFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 417 (434)
Q Consensus 385 rf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~ 417 (434)
-+..-.+|.|.|=|=+.-|...||-..+.|.+.
T Consensus 156 ~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 156 VYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 565667999999999999999999999998653
No 59
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.74 E-value=2.4 Score=35.17 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=53.3
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+.+.+.+. +..|-|.+-+...++ .+-||....+.|.++
T Consensus 46 ~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~~ 93 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTPD 93 (120)
T ss_dssp SEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEES
T ss_pred ceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeeec
Confidence 458999999999999995 567888876554332 234678889999999
Q ss_pred CceeeEEeecchhhH-HccceeEEEE
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAV 414 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v 414 (434)
.||.+-..|-..=.. +.-|.+.+.|
T Consensus 94 ~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 94 KPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred cCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999876543 4566666654
No 60
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.68 E-value=1.1 Score=40.84 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.|++.+.+. +..|.|.+-+... .+| +-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~-------------------------k~d---a~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPELGG-------------------------KID---AIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccccCc-------------------------eEE---ecCCcEEEEEEEeC
Confidence 348899999999999985 4556655543211 233 33678889999999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+...|--.-.. +..|...+.|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999873322 3788888888764
No 61
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.81 E-value=5.3 Score=30.76 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=38.8
Q ss_pred EEEEEEEecCCCCeeEEEEc-CC--eeEEEEeCCcccC------C--eeeeEEEeCCCCeEEEEEEeCCC---CCceEEE
Q 013875 95 TYLLRIINAALNDELFFAIA-GH--NFTVVEVDAVYTK------P--FTTEAILIAPGQTTNVLVQANQK---PGRYFMA 160 (434)
Q Consensus 95 ~~rlR~iN~~~~~~~~~~i~-g~--~~~via~DG~~~~------p--~~~~~~~l~~geR~dv~v~~~~~---~g~~~l~ 160 (434)
...|++.|.+. ..+.|.+. |+ .|.|...+|..+- . .-.....|.|||...+-.+.+.. +|.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 35788888884 45567664 44 4555566777761 1 22467899999999999998874 5899886
Q ss_pred E
Q 013875 161 A 161 (434)
Q Consensus 161 a 161 (434)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 5
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=88.44 E-value=1.1 Score=38.57 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=50.3
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEc--C----CeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceE
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIA--G----HNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYF 158 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~--g----~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~ 158 (434)
+..+.++.|+++|+-+-|.+-. -+.+-++ + |.-..+..| ..+--..+.+.|.||+...+++++.++ |.|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~-g~ye 137 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGA-GKYE 137 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCC-ccEE
Confidence 4578999999999999998854 3334444 2 222222222 111134578999999999999999886 9998
Q ss_pred EEE
Q 013875 159 MAA 161 (434)
Q Consensus 159 l~a 161 (434)
++-
T Consensus 138 ~~C 140 (158)
T COG4454 138 FAC 140 (158)
T ss_pred EEe
Confidence 874
No 63
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=79.84 E-value=7.3 Score=32.72 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|++|+|+- .+ ...|-.+.=+-. . |.+-+++....+.....- ++-|
T Consensus 56 v~v~pGDTVtw~~--~d---~~~Hnv~~~~~~---------~--------------~~g~~~~~~~~~~s~~~T--fe~~ 105 (128)
T COG3794 56 VTVKPGDTVTWVN--TD---SVGHNVTAVGGM---------D--------------PEGSGTLKAGINESFTHT--FETP 105 (128)
T ss_pred EEECCCCEEEEEE--CC---CCCceEEEeCCC---------C--------------cccccccccCCCcceEEE--eccc
Confidence 7899999999964 32 335654432221 1 111223333333444444 4449
Q ss_pred eeeEEeecchhhHHccceeEEEEe
Q 013875 392 GVWFMHCHLELHTGWGLKTAFAVE 415 (434)
Q Consensus 392 G~w~~HCHil~H~d~GM~~~~~v~ 415 (434)
|.|.|.|= -|..+||-+.+.|+
T Consensus 106 G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 106 GEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred ceEEEEec--cCCCCCcEEEEEeC
Confidence 99999996 69999999999885
No 64
>PRK02710 plastocyanin; Provisional
Probab=79.08 E-value=7.5 Score=32.13 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=38.9
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEe
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
+..++|++|++++| +|.+. ..+++.+++. .......+.+.+|+.+++.++. +|.|...-.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~-~~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKL-APHNAVFDGA------------KELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCC-CCceEEecCC------------ccccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 56799999998766 57653 3455555421 1112234668999999977764 588876643
No 65
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.49 E-value=7.6 Score=41.35 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=40.7
Q ss_pred ceeEEEeCCcEEEEEEEecCC--CCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEe
Q 013875 85 TFAMEVESGKTYLLRIINAAL--NDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~--~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
+..++|+.|+.++|++-|... ...+-|.|.++.. .+.+.||+...+.++++++ |.||+.-.
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adkP-Gvy~~~Ct 616 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADKP-GVYWYYCT 616 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCCC-EEEEEECC
Confidence 345677777777777777532 2233344433321 2467799999999999986 99998754
Q ss_pred c
Q 013875 163 P 163 (434)
Q Consensus 163 ~ 163 (434)
-
T Consensus 617 e 617 (635)
T PRK02888 617 W 617 (635)
T ss_pred c
Confidence 3
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=77.02 E-value=29 Score=28.73 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=44.8
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEecc
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 164 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~~~ 164 (434)
...+.++.|+.++|++-+.. -.+.|.|.+..+. +.+-||+...+-++++++ |.|+++-.-+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~~-G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDKP-GTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESSS-EEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeeccC-CcEEEcCccc
Confidence 45799999999999998855 4555666655432 345688888899999875 9999987644
No 67
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=75.35 E-value=9.3 Score=35.99 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=55.5
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+-+.++.|+.|++.+... +..|-|.+-+..++ +|+ -||-...+.+.++
T Consensus 137 n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~k-------------------------~d~---iPG~~~~~~~~~~ 184 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA----DVIHSFWIPQLGGK-------------------------IDA---IPGMTTELWLTAN 184 (247)
T ss_pred ceEEEeCCCeEEEEEEec----hhceeEEecCCCce-------------------------eee---cCCceEEEEEecC
Confidence 348899999999999875 45565555543322 222 3567788999999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecCC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDGP 418 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~~ 418 (434)
.||.|-.+|+..-=. +..|-..+.|+..+
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 999999999977643 46777777777544
No 68
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=74.36 E-value=21 Score=28.00 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred EeCCcEEEEEEE--ecCCCCeeEEEEcCC--eeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCC--CCceEEEEec
Q 013875 90 VESGKTYLLRII--NAALNDELFFAIAGH--NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQK--PGRYFMAARP 163 (434)
Q Consensus 90 v~~g~~~rlR~i--N~~~~~~~~~~i~g~--~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~--~g~~~l~a~~ 163 (434)
-+||+++.||++ +... . . -...+. .+.|..-+|..+.-... ........++.-+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~-~-~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D-F-KPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T-C-SCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c-c-ccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 579999999999 6652 1 0 111223 35666666766532222 134678888888888875 4999999985
No 69
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=73.43 E-value=16 Score=26.74 Aligned_cols=66 Identities=11% Similarity=0.274 Sum_probs=37.6
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEe
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
...|+++.|+++++.+-+.+. ...+.|...+|..+....-.. -..+..--+.+.+.+ +|+|.|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 467899999998888866654 223666666665432111111 011222333445544 499999875
No 70
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=71.06 E-value=28 Score=27.51 Aligned_cols=63 Identities=29% Similarity=0.417 Sum_probs=39.5
Q ss_pred ceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCccc-------CCeeeeEEEeCCCCeEEEEEEeCCCCCce
Q 013875 85 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-------KPFTTEAILIAPGQTTNVLVQANQKPGRY 157 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~-------~p~~~~~~~l~~geR~dv~v~~~~~~g~~ 157 (434)
+..++|++|++++ ++|... .. |.+.+.. |+.+. .+.. ....+.+|+.+++-++ + +|.|
T Consensus 16 P~~i~V~~G~tV~--~~n~~~-~~-------Hnv~~~~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~tF~--~-~G~y 80 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDS-MP-------HNVVFVA-DGMPAGADSDYVPPGD-SSPLLAPGETYSVTFT--K-PGTY 80 (99)
T ss_dssp SSEEEEETTEEEE--EEEESS-SS-------BEEEEET-TSSHTTGGHCHHSTTC-EEEEBSTTEEEEEEEE--S-SEEE
T ss_pred CCEEEECCCCEEE--EEECCC-CC-------ceEEEec-ccccccccccccCccc-cceecCCCCEEEEEeC--C-CeEE
Confidence 5789999999765 566522 22 3333332 33221 2221 6778999999999887 3 4898
Q ss_pred EEEEe
Q 013875 158 FMAAR 162 (434)
Q Consensus 158 ~l~a~ 162 (434)
...=.
T Consensus 81 ~y~C~ 85 (99)
T PF00127_consen 81 EYYCT 85 (99)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 77644
No 71
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.62 E-value=25 Score=32.75 Aligned_cols=76 Identities=9% Similarity=0.185 Sum_probs=55.2
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.|++.+.+. +..|.|.+-.... ..|. -||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~-------------------------k~d~---~Pg~~~~~~~~~~ 187 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGV-------------------------KVDA---IPGRLNQLSFEPK 187 (228)
T ss_pred CeEEEeeCcEEEEEEEcC----ccccceeccccCc-------------------------eeEC---CCCcceeEEEEeC
Confidence 458899999999999985 4566665543321 1233 2667788889999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+...|.-.-.. +..|-..++|.+.
T Consensus 188 ~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 188 RPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 999999999877665 5677777777654
No 72
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.60 E-value=53 Score=29.74 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=55.4
Q ss_pred eeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCC
Q 013875 311 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 390 (434)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 390 (434)
.+.++.|+.+++.+... +..|.|.+-.... .+|.+ ||....+.|.++.
T Consensus 117 ~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~~---PG~~~~~~~~~~~ 164 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDAI---PGRINHLFFCPDR 164 (194)
T ss_pred eEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeecC---CCceEEEEEEcCC
Confidence 47899999999999874 5677766654321 23443 6777889999999
Q ss_pred ceeeEEeecchhhH-HccceeEEEEecC
Q 013875 391 PGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 391 pG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
+|.+-.-|.-.-=. +..|-..+.|.++
T Consensus 165 ~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 165 HGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 99999999866543 4677777777654
No 73
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=63.13 E-value=63 Score=26.93 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=43.7
Q ss_pred eEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCccc-------CCeeeeEEEeCCCCeEEEEEEeCCC
Q 013875 87 AMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-------KPFTTEAILIAPGQTTNVLVQANQK 153 (434)
Q Consensus 87 ~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~-------~p~~~~~~~l~~geR~dv~v~~~~~ 153 (434)
.+.+..--.|+|++-. ....+|.|+|.. ||+.++..- .+.....+.+..|++|+|-|+..+.
T Consensus 53 ~~~~~~~G~y~f~~~~---~d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTS---DDGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEE---SSEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEe---cccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 3667666689999983 346778899877 577776443 3455678889999999999987654
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.58 E-value=68 Score=23.93 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=30.7
Q ss_pred EeCCcE--EEEEEEecCCCC--eeEEEEcCCeeEEEEeCCccc--CCeeeeEEEeCCCCeEEEEEEeC--C--CCCceEE
Q 013875 90 VESGKT--YLLRIINAALND--ELFFAIAGHNFTVVEVDAVYT--KPFTTEAILIAPGQTTNVLVQAN--Q--KPGRYFM 159 (434)
Q Consensus 90 v~~g~~--~rlR~iN~~~~~--~~~~~i~g~~~~via~DG~~~--~p~~~~~~~l~~geR~dv~v~~~--~--~~g~~~l 159 (434)
|++|+. +.+.+-|.+... ...++++ .=+|-.+ .|..+. .|.|||...+-++.. . .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 457765 567788887543 2333333 2344332 233333 789998776666654 2 2589988
Q ss_pred EEe
Q 013875 160 AAR 162 (434)
Q Consensus 160 ~a~ 162 (434)
.+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=59.53 E-value=59 Score=27.13 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred CceeEEEeC-CcEEEEEEEecCCCCeeEEEEcCCeeEEE---------------EeCCcccCCeeeeEE----EeCCCCe
Q 013875 84 DTFAMEVES-GKTYLLRIINAALNDELFFAIAGHNFTVV---------------EVDAVYTKPFTTEAI----LIAPGQT 143 (434)
Q Consensus 84 ~~~~~~v~~-g~~~rlR~iN~~~~~~~~~~i~g~~~~vi---------------a~DG~~~~p~~~~~~----~l~~geR 143 (434)
....|+|++ ++.+.+.|-|.+ ...-..-||.+-|. +.|-+++++-..+.| +|++||.
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G---~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes 90 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTG---KLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEK 90 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCC---cCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCce
Q ss_pred EEEEEEeC--CCCCceEEE
Q 013875 144 TNVLVQAN--QKPGRYFMA 160 (434)
Q Consensus 144 ~dv~v~~~--~~~g~~~l~ 160 (434)
.+|-|+++ ++.++|...
T Consensus 91 ~svtF~~~~l~~g~~Y~f~ 109 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFF 109 (125)
T ss_pred EEEEEECCCCCCCCcceEE
No 76
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=59.18 E-value=73 Score=26.41 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=39.3
Q ss_pred EEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCccc-CCeeeeEEEeCCCCeEEEEEEeCCCCC
Q 013875 88 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-KPFTTEAILIAPGQTTNVLVQANQKPG 155 (434)
Q Consensus 88 ~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~-~p~~~~~~~l~~geR~dv~v~~~~~~g 155 (434)
++++....|+|.+.. ....+|.|+|.. |++.++..- .+.....+.+..|++|.|.|+..+..+
T Consensus 52 i~~~~~G~y~f~~~~---~~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITS---DDGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEc---CCcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 555444569998843 345678888864 555544322 233345688888888888887765433
No 77
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=58.11 E-value=39 Score=24.51 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEE
Q 013875 88 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTN 145 (434)
Q Consensus 88 ~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~d 145 (434)
+++.+|+..+||.-.. ..|.+.+-..+|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 6778899999985542 23777777777763 442 2334455555553
No 78
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=57.60 E-value=51 Score=29.39 Aligned_cols=86 Identities=9% Similarity=0.122 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEc-CC----eeEEEEeCCccc-CCeee----eEEEeCCC
Q 013875 72 PTYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIA-GH----NFTVVEVDAVYT-KPFTT----EAILIAPG 141 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~-g~----~~~via~DG~~~-~p~~~----~~~~l~~g 141 (434)
+.|=.||... ..+++-+..|-++.+-++|.. ..++++.|- .- .--.++.||..+ -+-.. ..=-+.+|
T Consensus 73 ~~fNfnGts~--G~mtIyiPaGw~V~V~f~N~e-~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 73 YPFNFNGTSY--GAMTIYLPAGWNVYVTFTNYE-SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred ccccccCccC--CceEEEEeCCCEEEEEEEcCC-CCCccEEEecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 3477788764 569999999999999999998 445555551 11 123466777554 11111 11124689
Q ss_pred CeEEEEEEeCCCCCceEEEE
Q 013875 142 QTTNVLVQANQKPGRYFMAA 161 (434)
Q Consensus 142 eR~dv~v~~~~~~g~~~l~a 161 (434)
|+.+.+++.-+ +|.||+.-
T Consensus 150 qs~sg~~~~~~-~G~YwlvC 168 (195)
T TIGR03094 150 HSRSGWWNDTS-AGKYWLVC 168 (195)
T ss_pred ceeEEEeccCC-CeeEEEEc
Confidence 99888777664 59999974
No 79
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=52.88 E-value=1e+02 Score=23.59 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=39.9
Q ss_pred EEEeCCcEE--EEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEE-EeCCCCeEEEEEEeCC-CCCceEEEEec
Q 013875 88 MEVESGKTY--LLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI-LIAPGQTTNVLVQANQ-KPGRYFMAARP 163 (434)
Q Consensus 88 ~~v~~g~~~--rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~-~l~~geR~dv~v~~~~-~~g~~~l~a~~ 163 (434)
-.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+|.|.|++..
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 346678765 466889876553333332 23555555 33344 7899999888888765 46899888864
No 80
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=51.68 E-value=67 Score=28.12 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=51.6
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|..+++.+... +..|.|.+-.... ..|.+ ||....+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KADAI---PGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------eeecc---CCceEEEEEecC
Confidence 347899999999999874 4567666654321 23443 566677888999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEec
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVED 416 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~ 416 (434)
.+|.+...|.-+-=. +..|-..+.|..
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 999999999865422 245666666554
No 81
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=49.20 E-value=24 Score=29.06 Aligned_cols=28 Identities=11% Similarity=-0.072 Sum_probs=21.6
Q ss_pred cccCCCceEEeccCCCcccCCCCCCCcceEEec
Q 013875 3 KRSKSKARKWVCHRTCQMHTQSTGSQGPSFHVL 35 (434)
Q Consensus 3 ~~~~~Gt~wYH~H~~~q~~~~~~Gl~G~liv~~ 35 (434)
+-+++|+|=|+|= .|. .+||.|.++|.+
T Consensus 61 tF~~~G~Y~Y~C~----pH~-~~GM~G~V~Vg~ 88 (116)
T TIGR02375 61 TVTEEGVYGVKCT----PHY-GMGMVALIQVGD 88 (116)
T ss_pred EeCCCEEEEEEcC----CCc-cCCCEEEEEECC
Confidence 3468999999997 344 469999999655
No 82
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=48.34 E-value=46 Score=30.89 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|+.|++.+... +..|.|. |-+.+ ..+|.+ ||-...+.|++|.|
T Consensus 141 l~lP~g~pV~~~ltS~----DViHSF~-------VP~l~------------------~K~Dai---PG~~n~~~~~~~~~ 188 (226)
T TIGR01433 141 IAFPVNTPINFKITSN----SVMNSFF-------IPQLG------------------SQIYAM---AGMQTKLHLIANEP 188 (226)
T ss_pred EEEECCCEEEEEEEEC----chhhhhh-------hhhcC------------------CeeecC---CCceEEEEEEeCCC
Confidence 7899999999999875 4556554 43332 235665 67778899999999
Q ss_pred eeeEEeecchhhH-HccceeEEEEecC
Q 013875 392 GVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 392 G~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
|.|.-.|--.-=. +..|...+.|.++
T Consensus 189 G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 189 GVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999644322 3677777777654
No 83
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.97 E-value=60 Score=30.23 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=53.7
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+...+ .. |.|+|-+.| +..|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~------------------~k~da~---PG~~~~~~~~~~ 187 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL-------HSWAVPALG------------------VKMDAV---PGRLNQTAFIAS 187 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc-------cceeccccC------------------CccccC---CCceEEEEEEeC
Confidence 3478999999999998754 44 356665443 124443 677788889999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+-..|.-.--. +..|-..++|.+.
T Consensus 188 ~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 188 RPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred CceEEEEEChhhccccccCCcEEEEEECH
Confidence 999999999875443 4667777766643
No 84
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=47.85 E-value=1.5e+02 Score=24.04 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=11.7
Q ss_pred eeeeEEEeCCCCeEEEEEEeCC
Q 013875 131 FTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 131 ~~~~~~~l~~geR~dv~v~~~~ 152 (434)
.....+.|.+|..|.+++.-..
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEeccEEEcCCCEEEEEEECCC
Confidence 3334555666666666554443
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=45.52 E-value=1.9e+02 Score=29.78 Aligned_cols=74 Identities=16% Similarity=0.346 Sum_probs=49.4
Q ss_pred ceeEEEeCCc--EEEEEEEecCCCC--eeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCe--EEEEEEeCCC--CCc
Q 013875 85 TFAMEVESGK--TYLLRIINAALND--ELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQT--TNVLVQANQK--PGR 156 (434)
Q Consensus 85 ~~~~~v~~g~--~~rlR~iN~~~~~--~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR--~dv~v~~~~~--~g~ 156 (434)
...+++++|+ ..+++|-|.|+.. -+.+.+++-.=+-+.+|+..+ +. |.|||| +++-++++.. +|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 4678889985 6799999998654 456677766557777777643 22 355554 5556666553 589
Q ss_pred eEEEEeccC
Q 013875 157 YFMAARPFN 165 (434)
Q Consensus 157 ~~l~a~~~~ 165 (434)
|.++...-.
T Consensus 461 Y~i~i~~ks 469 (513)
T COG1470 461 YRITITAKS 469 (513)
T ss_pred EEEEEEEee
Confidence 998876543
No 86
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=44.23 E-value=67 Score=26.17 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred EEEEEEEecCCC-CeeEEEEcCC-eeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 95 TYLLRIINAALN-DELFFAIAGH-NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 95 ~~rlR~iN~~~~-~~~~~~i~g~-~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
.|+++|+|-+.. ..+.|+++|. .+++. . ..+.+.|.+|+..++-|....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEEE
Confidence 589999999864 4777777774 23331 1 346788889988877666543
No 87
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=43.56 E-value=72 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=29.2
Q ss_pred EEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccC----CeeeeEEEeCCCCeEE
Q 013875 95 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTK----PFTTEAILIAPGQTTN 145 (434)
Q Consensus 95 ~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~----p~~~~~~~l~~geR~d 145 (434)
.|++||-|.+.. .+.|-+..+.+...||...+ -+--..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 478999998753 35555666777777765321 1112344678888654
No 88
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=42.95 E-value=43 Score=26.22 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=24.5
Q ss_pred EEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccC---C-eeeeEEEeCCCCeEEE
Q 013875 95 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTK---P-FTTEAILIAPGQTTNV 146 (434)
Q Consensus 95 ~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~---p-~~~~~~~l~~geR~dv 146 (434)
.|++||-|.+.. .+.|-...+.|...||...+ + +--..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999998876 24444555555555553210 0 1113335888885543
No 89
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=40.76 E-value=1.5e+02 Score=24.40 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=36.6
Q ss_pred CceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEe
Q 013875 84 DTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 84 ~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
.+..++|++|++++|. |......+++.. .++.. .....+.+.+|+++++-|+ + +|.|...-.
T Consensus 40 ~P~~ltV~~GdTVtw~--~~~d~~~HnV~s---------~~~~~---f~s~~~~~~~G~t~s~Tf~--~-~G~Y~Y~C~ 101 (115)
T TIGR03102 40 DPPAIRVDPGTTVVWE--WTGEGGGHNVVS---------DGDGD---LDESERVSEEGTTYEHTFE--E-PGIYLYVCV 101 (115)
T ss_pred eCCEEEECCCCEEEEE--ECCCCCCEEEEE---------CCCCC---ccccccccCCCCEEEEEec--C-CcEEEEEcc
Confidence 3567899999988865 322223333322 23221 1123345678999998884 3 498877643
No 90
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=40.63 E-value=1.3e+02 Score=30.16 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=47.6
Q ss_pred eEEEcCCCCCCCceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 73 TYIINSAPFYLDTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 73 ~~lvNG~~~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
.++|+... +.+..++|++|+ ++|.+.|.+... +.|.++ +|+.+.- + .=.|.||.+..+.+.+.
T Consensus 33 ~Vti~d~~--c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv~-e--~EnIaPG~s~~l~~~L~- 95 (375)
T PRK10378 33 KVTVNDKQ--CEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVVE-E--RENIAPGFSQKMTANLQ- 95 (375)
T ss_pred EEEEECCc--cccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--ccccccc-c--ccccCCCCceEEEEecC-
Confidence 46676654 467889999996 999999998543 234444 2332200 1 12689999888887773
Q ss_pred CCCceEEEE
Q 013875 153 KPGRYFMAA 161 (434)
Q Consensus 153 ~~g~~~l~a 161 (434)
+|+|.+.-
T Consensus 96 -pGtY~~~C 103 (375)
T PRK10378 96 -PGEYDMTC 103 (375)
T ss_pred -CceEEeec
Confidence 59998874
No 91
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=39.67 E-value=1.2e+02 Score=24.84 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=41.5
Q ss_pred eeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCC----eeeeEEEeCCCCeEEEEEEeCC--CCCceEE
Q 013875 86 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKP----FTTEAILIAPGQTTNVLVQANQ--KPGRYFM 159 (434)
Q Consensus 86 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p----~~~~~~~l~~geR~dv~v~~~~--~~g~~~l 159 (434)
+.-.+..|+.+++|+-=......-.+.+ .+.+...||..+-- .....+....++++.+.++++. .+|.|.|
T Consensus 27 ~~~~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i 103 (142)
T PF14524_consen 27 PTSSFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSI 103 (142)
T ss_dssp S-SSEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEE
T ss_pred EeeEEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEE
Confidence 3444778888888875433333333333 36667777766511 1112444444999999999887 3699999
Q ss_pred EEec
Q 013875 160 AARP 163 (434)
Q Consensus 160 ~a~~ 163 (434)
.+..
T Consensus 104 ~v~l 107 (142)
T PF14524_consen 104 SVGL 107 (142)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 92
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=38.50 E-value=1.3e+02 Score=27.96 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=53.6
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.|++.+.+. +..|.|.+-+... ..|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~-------------------------k~dai---PG~~~~~~~~~~ 187 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGV-------------------------KVDAV---PGRLNQIGFTIT 187 (228)
T ss_pred ceEEEecCCEEEEEEEeC----CccccccccccCc-------------------------ceecC---CCceEEEEEEeC
Confidence 447899999999999985 4566655554322 23333 667778888999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+..-|--.-.. +.-|-..++|.+.
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 188 RPGVFYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred CCEEEEEEChhhcCcCccCceeEEEEECH
Confidence 999999999766554 4567666666543
No 93
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=36.74 E-value=1.4e+02 Score=25.03 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=41.0
Q ss_pred CceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEec
Q 013875 84 DTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 163 (434)
Q Consensus 84 ~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~~ 163 (434)
.+..++|++|+++| ++|.+.. .+++. +.++. .|.....+.-.+++.+..-|+. +|.|.+.-.+
T Consensus 52 ~PA~v~v~pGDTVt--w~~~d~~-~Hnv~---------~~~~~--~~~g~~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P 114 (128)
T COG3794 52 EPAEVTVKPGDTVT--WVNTDSV-GHNVT---------AVGGM--DPEGSGTLKAGINESFTHTFET---PGEYTYYCTP 114 (128)
T ss_pred cCcEEEECCCCEEE--EEECCCC-CceEE---------EeCCC--CcccccccccCCCcceEEEecc---cceEEEEecc
Confidence 46789999999665 4777653 33222 22222 4555667777778988887765 4888776543
No 94
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=36.52 E-value=1.5e+02 Score=27.73 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=29.5
Q ss_pred eeEEEeCCcEEEEEEEecCCCC--eeEEEEcCCeeEEEEeCCcccC
Q 013875 86 FAMEVESGKTYLLRIINAALND--ELFFAIAGHNFTVVEVDAVYTK 129 (434)
Q Consensus 86 ~~~~v~~g~~~rlR~iN~~~~~--~~~~~i~g~~~~via~DG~~~~ 129 (434)
..+-+++| +|.||+|.-+... -..+-|++ -+.++|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~N-GeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDN-GEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCC-ceEEEEcCCceeE
Confidence 45678998 7999999876433 22344443 4789999999873
No 95
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.91 E-value=1.4e+02 Score=28.08 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=54.3
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|.|.+-... +.+|.+ ||....+.|.++
T Consensus 151 n~lvlP~~~~v~~~~tS~----DViHsf~iP~lg-------------------------vK~Dai---PG~~n~~~~~~~ 198 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA----DVLHSFAVPSLG-------------------------LKIDAV---PGRLNQTGFFIK 198 (240)
T ss_pred ceEEEecCCEEEEEEEcC----CcccceeecccC-------------------------ceeecC---CCcceeEEEEcC
Confidence 458899999999999874 566766665332 234544 556677889999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+.-.|.-.--. +.-|-..++|.+.
T Consensus 199 ~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 199 RPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 999999999866654 4567677766654
No 96
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=35.62 E-value=86 Score=28.84 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=53.0
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|+.|++.+... +..|. |+|=+.+ ..+|.+ ||-...+.|.++.|
T Consensus 132 l~iP~g~~v~~~ltS~----DViHs-------f~vP~l~------------------~k~dai---PG~~~~~~~~~~~~ 179 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSA----DTMTS-------FWIPQLG------------------GQKYAM---TGMTMNWYLQADQV 179 (217)
T ss_pred EEEECCCEEEEEEECC----chhhh-------hhchhhC------------------ceeecC---CCceEEEEEEeCCC
Confidence 7899999999999875 34554 4443332 245665 67788999999999
Q ss_pred eeeEEeecchhhH-HccceeEEEEecCC
Q 013875 392 GVWFMHCHLELHT-GWGLKTAFAVEDGP 418 (434)
Q Consensus 392 G~w~~HCHil~H~-d~GM~~~~~v~~~~ 418 (434)
|.|--.|=-.-=. +.-|-..+.|.+++
T Consensus 180 G~y~g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 180 GTYRGRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred EEEEEEehhhcCccccCCeEEEEEeCHH
Confidence 9999999533222 35677777766543
No 97
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=35.04 E-value=17 Score=29.93 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=5.6
Q ss_pred EEeccC
Q 013875 11 KWVCHR 16 (434)
Q Consensus 11 wYH~H~ 16 (434)
|||||-
T Consensus 70 ~YHSHP 75 (119)
T cd08058 70 WYHSHP 75 (119)
T ss_pred EEecCC
Confidence 999997
No 98
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=34.20 E-value=2e+02 Score=25.99 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=41.1
Q ss_pred eeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEeccC
Q 013875 86 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 165 (434)
Q Consensus 86 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~~~~ 165 (434)
..+.++.|+.+||++-+.... +.+.+.+... .+..-||..-.+-++++++ |.|..+-.-+.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~~~-G~y~~~c~e~c 177 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI--HSFWVPELGG----------------KIDAIPGQYNALWFNADEP-GVYYGYCAELC 177 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh--hcccccccCc----------------eEEecCCcEEEEEEEeCCC-EEEEEEehhhC
Confidence 468888999999987765433 2233332211 2446689999999998875 99988876443
No 99
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=31.80 E-value=2.7e+02 Score=22.32 Aligned_cols=85 Identities=13% Similarity=0.273 Sum_probs=52.2
Q ss_pred CeEEEcCCCCCCCceeEEEeC--CcEEEEEEEecCCCCeeEEEEc----C--CeeEEEEeCCcc-----cCCeeeeEEEe
Q 013875 72 PTYIINSAPFYLDTFAMEVES--GKTYLLRIINAALNDELFFAIA----G--HNFTVVEVDAVY-----TKPFTTEAILI 138 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~--g~~~rlR~iN~~~~~~~~~~i~----g--~~~~via~DG~~-----~~p~~~~~~~l 138 (434)
++.++.|.++ ...++-=+. |.++-+=-||+...+.+.|.++ | ...+++ .||.. -..+.+.+..+
T Consensus 5 eT~~L~g~pG--eyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~-~D~~~a~~~~~~~~~~~~~~v 81 (103)
T PF14509_consen 5 ETRVLDGYPG--EYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIY-TDGPDADYTNPEAYKIETRKV 81 (103)
T ss_dssp EEEEEEEETT--TEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEE-EE-TTTCTTCTT-EEEEEEEE
T ss_pred ceEEeCCcCc--eEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEE-EeCCcccccCCcceEEEEEEE
Confidence 4567788764 444454555 7888889999988888777774 3 356666 66652 24567788888
Q ss_pred CCCCeEEEEEEeCCCCCceEEEEe
Q 013875 139 APGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 139 ~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
..+....+-+... |-|.++..
T Consensus 82 ~~~~~l~i~l~~~---GG~vi~~~ 102 (103)
T PF14509_consen 82 TSGDKLTITLAPG---GGFVIRIT 102 (103)
T ss_dssp -TT-EEEEEE-TT----EEEEEEE
T ss_pred CCCCEEEEEEeCC---CcEEEEEE
Confidence 8888888777432 66766653
No 100
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=30.68 E-value=37 Score=24.11 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=29.6
Q ss_pred EEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 99 RIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 99 R~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
++-+.+......+.++++. .+.+. +.+.....+-|.+|+++-+.+++.+
T Consensus 13 ~ie~~g~~~~v~~~~~~~~-~l~a~----it~~~~~~L~L~~G~~V~~~ik~~~ 61 (64)
T PF03459_consen 13 SIENLGSEVEVTLDLGGGE-TLTAR----ITPESAEELGLKPGDEVYASIKASS 61 (64)
T ss_dssp EEEESSSEEEEEEEETTSE-EEEEE----EEHHHHHHCT-STT-EEEEEE-GGG
T ss_pred EEEECCCeEEEEEEECCCC-EEEEE----EcHHHHHHcCCCCCCEEEEEEehhh
Confidence 4555665566666666666 23333 3445567788999999999998753
No 101
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.80 E-value=2.1e+02 Score=26.50 Aligned_cols=76 Identities=11% Similarity=0.213 Sum_probs=52.6
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|. |+|-+.| +..|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHs-------f~ip~lg------------------~k~dai---PG~~~~~~~~~~ 187 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSE----DVLHS-------WAVPSLG------------------LKTDAI---PGRLNQTTLMST 187 (227)
T ss_pred ceEEecCCCEEEEEEEEC----ccccc-------ccccccc------------------cceecC---CCceEEEEEecC
Confidence 457899999999999875 34554 4443332 233443 677778889999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+..-|.-.-.. +.-|-..++|.+.
T Consensus 188 ~~G~~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 188 RPGLYYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred CcEEEEEECccccCcCcCCceEEEEEeCH
Confidence 999999999876554 3566666666543
No 102
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.47 E-value=2.5e+02 Score=26.16 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=51.2
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|.| +|-+.| +..|.+ ||....+.+.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf-------~iP~lg------------------~k~dai---PG~~~~~~~~~~ 187 (230)
T MTH00185 140 HRMVVPMESPIRVLITAE----DVLHSW-------TVPALG------------------VKMDAV---PGRLNQATFIIS 187 (230)
T ss_pred CeEEEecCCEEEEEEEcC----cccccc-------cccccC------------------ceeEec---CCceEEEEEEeC
Confidence 447899999999999875 445544 443332 123443 566778888999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEec
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVED 416 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~ 416 (434)
.||.+.--|.-.=.. +.-|-..+++.+
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 188 RPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 999999999876554 355666665554
No 103
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.07 E-value=66 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=0.0
Q ss_pred ecCCcEEEEEEEc-CCc---eeeEEee
Q 013875 376 VPTGGWTAIRFRA-DNP---GVWFMHC 398 (434)
Q Consensus 376 vp~~g~v~irf~a-dnp---G~w~~HC 398 (434)
|+||..+.|.++. .|| |.|.|+|
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v 125 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNV 125 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEE
No 104
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=27.72 E-value=78 Score=21.50 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCCcccee-EecCCcEEEEEEEcCCceeeEEeecchhhHHc
Q 013875 366 VDPIERNTA-AVPTGGWTAIRFRADNPGVWFMHCHLELHTGW 406 (434)
Q Consensus 366 ~~p~~rDTv-~vp~~g~v~irf~adnpG~w~~HCHil~H~d~ 406 (434)
..|..+-+. ..+.|+.+.+.++-.....+=+||...-|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344444433 34567888888888999999999999999753
No 105
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.26 E-value=2.5e+02 Score=22.56 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=39.5
Q ss_pred eEEEeCC--cEEEEEEEecCCCCeeEEEEcCCe--------eEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 87 AMEVESG--KTYLLRIINAALNDELFFAIAGHN--------FTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 87 ~~~v~~g--~~~rlR~iN~~~~~~~~~~i~g~~--------~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
.+.+.+| ++.+|++.|.+ .+++.+.-|=|= |.--++=|-.+.--.-+.+...|||..+|-+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4788888 47899999998 566655444332 2222333333332234677888888888766543
No 106
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.24 E-value=2.5e+02 Score=26.10 Aligned_cols=75 Identities=9% Similarity=0.220 Sum_probs=52.3
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|.|.+-.. | +..|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~iP~l-------g------------------~k~dai---PG~~~~~~~~~~ 187 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSA----DVLHSWAVPSL-------G------------------VKMDAV---PGRLNQTTFFIS 187 (229)
T ss_pred ceEEEecCeEEEEEEEEC----Ccccccccccc-------C------------------ceeecC---CCceEEEEEEcC
Confidence 457899999999999874 46676665433 1 234554 567778889999
Q ss_pred CceeeEEeecchhhHH-ccceeEEEEec
Q 013875 390 NPGVWFMHCHLELHTG-WGLKTAFAVED 416 (434)
Q Consensus 390 npG~w~~HCHil~H~d-~GM~~~~~v~~ 416 (434)
.||.+...|--.--.. .=|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 188 RTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 9999999998666543 44555555443
No 107
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=27.24 E-value=2.1e+02 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=33.1
Q ss_pred EEEEEEEecCCC-CeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCC
Q 013875 95 TYLLRIINAALN-DELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQ 152 (434)
Q Consensus 95 ~~rlR~iN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~ 152 (434)
.|++++.|-+.. ..+.++++|.+ |..++- ..+.+.+.|||+.++.|....
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEEe
Confidence 589999998754 47777777643 221110 012789999999877776544
No 108
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=26.72 E-value=2e+02 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=26.0
Q ss_pred EecCCcEEEEEEEcCCceeeEEeecchhhHHccceeEEEEecC
Q 013875 375 AVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 417 (434)
Q Consensus 375 ~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~v~~~ 417 (434)
+|.||....+.+.. -||.|-|+| ..| ..|-+.|.|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 55666555555555 599999999 446 446777888654
No 109
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.71 E-value=2.2e+02 Score=26.33 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=52.4
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|.|.+- +.| +.+|.+ ||-...+.|.++
T Consensus 140 n~l~lP~~~~v~~~~tS~----DViHsf~vP-------~l~------------------~K~Dai---PG~~n~~~~~~~ 187 (226)
T MTH00139 140 NRLVLPYKSNIRALITAA----DVLHSWTVP-------SLG------------------VKIDAV---PGRLNQVGFFIN 187 (226)
T ss_pred ceEEEecCCEEEEEEecC----ccccceecc-------ccC------------------ccccCC---CCcEEEEEEEcC
Confidence 458899999999999874 456655443 332 245665 567778889999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+.--|--+-=. +.-|-..++|.+.
T Consensus 188 ~~G~y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 188 RPGVFYGQCSEICGANHSFMPIVVEAISP 216 (226)
T ss_pred CCEEEEEEChhhcCcCcCCCeEEEEEeCH
Confidence 999999999654432 3456666665543
No 110
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=26.19 E-value=3.1e+02 Score=21.22 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=35.8
Q ss_pred EEeCCcEE--EEEEEecCCCC-eeEEEEcCC---eeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC-C-CCCceEE
Q 013875 89 EVESGKTY--LLRIINAALND-ELFFAIAGH---NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN-Q-KPGRYFM 159 (434)
Q Consensus 89 ~v~~g~~~--rlR~iN~~~~~-~~~~~i~g~---~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~-~-~~g~~~l 159 (434)
.+..|++| .+.|.|.|... .|++..... .|.+ .| ..-.|+||+..++-|++. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 46667766 58899998543 344444331 1111 22 123589999999999887 3 2465543
No 111
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=25.99 E-value=4.2e+02 Score=22.71 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=52.0
Q ss_pred CeEEEcCCCCCCCceeEEEeCC-cEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeee-------eEEEeCCCCe
Q 013875 72 PTYIINSAPFYLDTFAMEVESG-KTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTT-------EAILIAPGQT 143 (434)
Q Consensus 72 d~~lvNG~~~~~~~~~~~v~~g-~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~-------~~~~l~~geR 143 (434)
|...||.-+ .+...-..| .+|-|-+-|.+... +.++...++|+ +||+.+.|..+ +.+.|.|||-
T Consensus 51 dFaIIndPg----~i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~V 122 (154)
T COG3354 51 DFAIINDPG----QIPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQV 122 (154)
T ss_pred cEEEecCCC----CCccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCce
Confidence 456677642 222222212 47888899998653 45688889998 99988866433 5677999997
Q ss_pred E-EEEEEeCCCCCceEEEEe
Q 013875 144 T-NVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 144 ~-dv~v~~~~~~g~~~l~a~ 162 (434)
- ++.+.-.- .|...+.+.
T Consensus 123 g~ev~vn~~l-SGyhri~V~ 141 (154)
T COG3354 123 GREVTVNEAL-SGYHRIVVS 141 (154)
T ss_pred eeEEEeccCC-CcceEEEEE
Confidence 7 55444333 366656554
No 112
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.29 E-value=33 Score=32.67 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=8.3
Q ss_pred eEEeccC--CCccc
Q 013875 10 RKWVCHR--TCQMH 21 (434)
Q Consensus 10 ~wYH~H~--~~q~~ 21 (434)
-|||||- ++|..
T Consensus 135 GWyHSHPgYgCWLS 148 (347)
T KOG1554|consen 135 GWYHSHPGYGCWLS 148 (347)
T ss_pred eeeecCCCCCcccc
Confidence 4999995 55533
No 113
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=25.14 E-value=31 Score=31.05 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=5.3
Q ss_pred EEeccCC
Q 013875 11 KWVCHRT 17 (434)
Q Consensus 11 wYH~H~~ 17 (434)
|||||-.
T Consensus 84 wYHSHP~ 90 (187)
T cd08067 84 WYHSHPT 90 (187)
T ss_pred EEecCCC
Confidence 8888863
No 114
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=24.86 E-value=1.2e+02 Score=24.22 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=31.8
Q ss_pred eeEecCCcEEEEEEEcCCceeeEEeecchhhHHccc--eeEEEE
Q 013875 373 TAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGL--KTAFAV 414 (434)
Q Consensus 373 Tv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GM--~~~~~v 414 (434)
...|.+|+...+.|..+-.|.-+|.|++.| .|+ ...|.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEE
Confidence 446888999999998888899999999999 555 666655
No 115
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=24.72 E-value=2e+02 Score=21.33 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=5.0
Q ss_pred EEEeCCcEEEE
Q 013875 88 MEVESGKTYLL 98 (434)
Q Consensus 88 ~~v~~g~~~rl 98 (434)
..+++|+++.|
T Consensus 24 ~~l~~G~~~~~ 34 (77)
T PF13464_consen 24 GTLKAGETKTF 34 (77)
T ss_pred eeeCCCcEEEE
Confidence 34455544444
No 116
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=24.13 E-value=2.1e+02 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=18.1
Q ss_pred ceeEEEeCCcEEEEEEEecC
Q 013875 85 TFAMEVESGKTYLLRIINAA 104 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~ 104 (434)
+|.+++++|++..+||+..+
T Consensus 72 PPl~rl~p~~~q~lRI~~~~ 91 (226)
T PRK15295 72 PPLFRLDAGQKNSIRVIRSG 91 (226)
T ss_pred CCeEEECCCCceEEEEEECC
Confidence 67899999999999999875
No 117
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.94 E-value=2.1e+02 Score=28.09 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred eEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcCCc
Q 013875 312 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 391 (434)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp 391 (434)
+.++.|..|++.+...+ ..|.|.+= +.+ ...|.+ ||-...+.|.+|.|
T Consensus 153 L~iP~g~pV~f~lTS~D----ViHSF~IP-------~Lg------------------~K~dam---PG~~n~l~~~a~~~ 200 (315)
T PRK10525 153 IAFPANVPVYFKVTSNS----VMNSFFIP-------RLG------------------SQIYAM---AGMQTRLHLIANEP 200 (315)
T ss_pred EEEecCCEEEEEEEEch----hhhhhhhh-------hhC------------------CeeecC---CCceeEEEEEcCCC
Confidence 78999999999998753 45554443 332 124444 56778899999999
Q ss_pred eeeEEeecchhhH-HccceeEEEEe
Q 013875 392 GVWFMHCHLELHT-GWGLKTAFAVE 415 (434)
Q Consensus 392 G~w~~HCHil~H~-d~GM~~~~~v~ 415 (434)
|.|.-.|--.-=. ...|...+.+.
T Consensus 201 G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 201 GTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEEEEChhhcCccccCCeEEEEEE
Confidence 9999999654432 35677766654
No 118
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=23.82 E-value=3.1e+02 Score=20.58 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=36.4
Q ss_pred CceeEEEeCCcEEEEEEEecCCCCeeEEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEE
Q 013875 84 DTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAA 161 (434)
Q Consensus 84 ~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a 161 (434)
.++.+++++|+++.| +|... ..+++.+.+.. ++. .......+.+|+.+.+.+ ++ +|.|...=
T Consensus 9 ~P~~i~v~~GdtVt~--~N~d~-~~Hnv~~~~g~------~~~----~~~~~~~~~~g~~~~~tf--~~-~G~y~y~C 70 (83)
T TIGR02657 9 ETPELHVKVGDTVTW--INREA-MPHNVHFVAGV------LGE----AALKGPMMKKEQAYSLTF--TE-AGTYDYHC 70 (83)
T ss_pred cCCEEEECCCCEEEE--EECCC-CCccEEecCCC------Ccc----ccccccccCCCCEEEEEC--CC-CEEEEEEc
Confidence 467899999999887 57643 23444332111 111 112233468899998755 34 48887664
No 119
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=23.32 E-value=34 Score=32.13 Aligned_cols=8 Identities=13% Similarity=0.107 Sum_probs=6.5
Q ss_pred eEEeccCC
Q 013875 10 RKWVCHRT 17 (434)
Q Consensus 10 ~wYH~H~~ 17 (434)
=|||||-.
T Consensus 93 GwYHSHP~ 100 (244)
T cd08068 93 GWYHSHPH 100 (244)
T ss_pred EEEecCCC
Confidence 49999974
No 120
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=22.45 E-value=57 Score=30.75 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=30.7
Q ss_pred CcccCCCceEEeccC-CCcccCCCCCCCcceEEecCChhHHHHhhh
Q 013875 2 LKRSKSKARKWVCHR-TCQMHTQSTGSQGPSFHVLRNVRKLSKLLE 46 (434)
Q Consensus 2 ~~~~~~Gt~wYH~H~-~~q~~~~~~Gl~G~liv~~~~~~~l~~~~~ 46 (434)
+++++.|+|.-.|+- -...|. .|.|.++|++++. ...|..
T Consensus 181 ~~~~~~G~Y~g~Cae~CG~gH~---~M~~~v~vvs~~~--f~~W~~ 221 (247)
T COG1622 181 LTANKPGTYRGICAEYCGPGHS---FMRFKVIVVSQED--FDAWVA 221 (247)
T ss_pred EecCCCeEEEEEcHhhcCCCcc---cceEEEEEEcHHH--HHHHHH
Confidence 689999999999994 556677 8999999776544 445554
No 121
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.37 E-value=2.3e+02 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.6
Q ss_pred ceeEEEeCCcEEEEEEEecC
Q 013875 85 TFAMEVESGKTYLLRIINAA 104 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~ 104 (434)
+|.++++||+++.+|++-.+
T Consensus 75 PPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred CCeEEECCCCceEEEEEECC
Confidence 67899999999999999765
No 122
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.21 E-value=54 Score=23.93 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=14.3
Q ss_pred eEEEcCCCCCCCceeEEEeCCcEEEEE
Q 013875 73 TYIINSAPFYLDTFAMEVESGKTYLLR 99 (434)
Q Consensus 73 ~~lvNG~~~~~~~~~~~v~~g~~~rlR 99 (434)
.+.|||+......-...++.|++++|+
T Consensus 42 ~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 42 MYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred EEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 577888753222345678888888875
No 123
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.05 E-value=2.2e+02 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.5
Q ss_pred ceeEEEeCCcEEEEEEEecCC
Q 013875 85 TFAMEVESGKTYLLRIINAAL 105 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~ 105 (434)
+|.+++++|++..+||+..+.
T Consensus 76 PPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 76 PPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred CCeEEECCCCccEEEEEECCC
Confidence 678999999999999998763
No 124
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=22.00 E-value=2.3e+02 Score=23.91 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=42.2
Q ss_pred cEEEEEEEecCCCCee---EEEEcCCeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCC-----CCceEEE
Q 013875 94 KTYLLRIINAALNDEL---FFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQK-----PGRYFMA 160 (434)
Q Consensus 94 ~~~rlR~iN~~~~~~~---~~~i~g~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~-----~g~~~l~ 160 (434)
|++-|+|+|-.....+ +..|..-+|.--.-....+.+..++.+.|.||+.+.+----.+. .|.|-|.
T Consensus 2 qwv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~ 76 (131)
T PF06355_consen 2 QWVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLY 76 (131)
T ss_pred cEEEEEEEeCCCCccEEEEccEeccCccccCCCcCCEeCccccCceEecCCCeEEEEEecCCCCCcCceEEEEEE
Confidence 6788999886543222 33455556664444444566778899999999998776644421 2555555
No 125
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=21.89 E-value=1.7e+02 Score=27.09 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=15.3
Q ss_pred EEEEeCCcccCCeeeeEEEeCCCCeEEEE
Q 013875 119 TVVEVDAVYTKPFTTEAILIAPGQTTNVL 147 (434)
Q Consensus 119 ~via~DG~~~~p~~~~~~~l~~geR~dv~ 147 (434)
-.|..||....=..-..|.|.|||.+.+.
T Consensus 139 v~V~~DG~~~t~~aG~~l~L~PGESiTL~ 167 (225)
T PF07385_consen 139 VTVPVDGIRRTVPAGTQLRLNPGESITLP 167 (225)
T ss_dssp EEEEETTEEEEE-TT-EEEE-TT-EEEE-
T ss_pred eEEecCCcEEEecCCceEEeCCCCeEeeC
Confidence 34467776542112367899999998653
No 126
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=21.50 E-value=3.6e+02 Score=20.46 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=36.2
Q ss_pred EEEeCCcEEEEEEEecCCCCeeEEEEcC--CeeEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeCCCCCceEEEEe
Q 013875 88 MEVESGKTYLLRIINAALNDELFFAIAG--HNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 162 (434)
Q Consensus 88 ~~v~~g~~~rlR~iN~~~~~~~~~~i~g--~~~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~~~~g~~~l~a~ 162 (434)
|+++.|++..++|---.+ ..+..++.. ..+.++..+-.+-++- +. .++.+...-+.+++.++ |...|...
T Consensus 1 I~v~~g~~~~I~L~~nps-tGY~W~~~~~~~~l~l~~~~~~~~~~~--~~-~vG~~g~~~f~f~a~~~-G~~~i~~~ 72 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPS-TGYSWSLSSDSDGLQLVSEEYIPDNSP--SG-LVGAPGTRTFTFKALKP-GTTTIKFE 72 (92)
T ss_dssp -EEETTSEEEEEEEEBCC-GTBEEEECTSTTTEEEEEEEEEESSTS--ST-SSTSSEEEEEEEEESSS-EEEEEEEE
T ss_pred CeecCCCEEEEEECCCCC-CCeEEEEecCCCeEEEcCCcEEeCCCC--cC-CCCCCcEEEEEEEEecC-eeEEEEEE
Confidence 578899999998874433 333344433 4455544322222110 11 34444444477777664 76666543
No 127
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=21.29 E-value=2.3e+02 Score=26.28 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.4
Q ss_pred ceeEEEeCCcEEEEEEEecCC
Q 013875 85 TFAMEVESGKTYLLRIINAAL 105 (434)
Q Consensus 85 ~~~~~v~~g~~~rlR~iN~~~ 105 (434)
+|.++++||++..+||+..+.
T Consensus 73 PPl~rl~p~~~q~lRIi~~~~ 93 (228)
T PRK15208 73 PPLFKLDPTKNNVLRIVNITN 93 (228)
T ss_pred CCeEEECCCCccEEEEEECCC
Confidence 678999999999999998753
No 128
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=21.19 E-value=4e+02 Score=21.36 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=39.7
Q ss_pred eEEEeCC-cEEEEEEEecCCCCeeEEEEcCCe--------eEEEEeCCcccCCeeeeEEEeCCCCeEEEEEEeC
Q 013875 87 AMEVESG-KTYLLRIINAALNDELFFAIAGHN--------FTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 151 (434)
Q Consensus 87 ~~~v~~g-~~~rlR~iN~~~~~~~~~~i~g~~--------~~via~DG~~~~p~~~~~~~l~~geR~dv~v~~~ 151 (434)
.+.+.+| ++..+.+.|.+ .+++.+.-|=|= |.--++=|-.+.--.-+.+...|||..+|-+..-
T Consensus 12 ~I~ln~gr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTG-DRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred CEEeCCCCcEEEEEEEeCC-CcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 4777777 46789999998 566655444332 3223333444432234678888888888876543
No 129
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.92 E-value=3.9e+02 Score=24.74 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=51.9
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+... +..|.|.+= +.| +..|.+ ||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~tS~----DViHsf~vP-------~lg------------------~k~da~---PG~~n~~~~~~~ 187 (228)
T MTH00076 140 NRMVVPMESPIRMLITAE----DVLHSWAVP-------SLG------------------IKTDAI---PGRLNQTSFIAS 187 (228)
T ss_pred ceEEEecCCEEEEEEEec----ccccccccc-------ccC------------------ceEEcc---CCcceeEEEEeC
Confidence 458899999999999875 455555443 222 123443 566677888899
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+---|.-.-.. +..|-..+++.+.
T Consensus 188 ~~G~~~g~C~e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 188 RPGVYYGQCSEICGANHSFMPIVVEATPL 216 (228)
T ss_pred CcEEEEEEChhhcCccccCCceEEEEeCH
Confidence 999999999875544 4667666666543
No 130
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=20.75 E-value=1.1e+02 Score=27.75 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=29.3
Q ss_pred EEEeCCCCeEEEEEEeCCC-------CCceEEEEeccCCCCCCCCCcceEEEEEEc
Q 013875 135 AILIAPGQTTNVLVQANQK-------PGRYFMAARPFNDAPIPVDNKTATGILQYK 183 (434)
Q Consensus 135 ~~~l~~geR~dv~v~~~~~-------~g~~~l~a~~~~~~~~~~~~~~~~ail~y~ 183 (434)
.-.+.+||.|||.++..=+ .|.|-+.++.+...+.........++|+|.
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~ 105 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLASSSRPAMLPYR 105 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEEEEecceecccC
Confidence 4467899999999987532 377877777654332111112234566664
No 131
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.59 E-value=4e+02 Score=24.80 Aligned_cols=76 Identities=11% Similarity=0.183 Sum_probs=51.8
Q ss_pred eeeEeecCCeEEEEEEeCCCCCCCCCCccccCCceEEEEecCCcCCCCCCCCCCCCCCCCccceeEecCCcEEEEEEEcC
Q 013875 310 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 389 (434)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 389 (434)
+.+.++.|+.+++.+.+. +..|.|.+-.. | +..|.+ ||....+.|.++
T Consensus 144 n~lvlP~~~~v~~~itS~----DViHsf~vp~l-------g------------------~k~dai---PG~~~~~~~~~~ 191 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA----DVLHSFAVPSL-------S------------------VKIDAV---PGRLNQTSFFIK 191 (234)
T ss_pred eEEEEecCcEEEEEEEeC----chhcccccccc-------C------------------ceeEcc---CCceEeEEEEeC
Confidence 457899999999999885 45665555432 2 123433 566677888999
Q ss_pred CceeeEEeecchhhH-HccceeEEEEecC
Q 013875 390 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 417 (434)
Q Consensus 390 npG~w~~HCHil~H~-d~GM~~~~~v~~~ 417 (434)
.||.+---|.-.=-. +.-|-..++|.+.
T Consensus 192 ~~G~y~g~Cse~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 192 RPGVFYGQCSEICGANHSFMPIVIEGVSL 220 (234)
T ss_pred CCEEEEEEChhhcCcccccCeeEEEEECH
Confidence 999999999864433 3556666665543
No 132
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=38 Score=32.93 Aligned_cols=7 Identities=14% Similarity=0.136 Sum_probs=6.0
Q ss_pred eEEeccC
Q 013875 10 RKWVCHR 16 (434)
Q Consensus 10 ~wYH~H~ 16 (434)
-|||||-
T Consensus 119 GWYHSHP 125 (316)
T KOG1555|consen 119 GWYHSHP 125 (316)
T ss_pred eeccCCC
Confidence 4999996
Done!