Query 013877
Match_columns 434
No_of_seqs 479 out of 1982
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0059 IlvC Ketol-acid reduct 100.0 7.8E-77 1.7E-81 583.2 25.0 305 101-432 10-320 (338)
2 PRK05225 ketol-acid reductoiso 100.0 9.4E-74 2E-78 589.9 22.5 323 71-432 1-474 (487)
3 PRK13403 ketol-acid reductoiso 100.0 3.6E-71 7.7E-76 553.1 25.7 302 104-432 10-317 (335)
4 PRK05479 ketol-acid reductoiso 100.0 1.7E-65 3.6E-70 515.9 27.1 302 105-432 12-319 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 4.4E-61 9.6E-66 481.9 26.7 297 108-432 1-304 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 9.9E-42 2.2E-46 311.3 15.1 161 108-288 2-163 (165)
7 COG0345 ProC Pyrroline-5-carbo 100.0 8E-34 1.7E-38 278.7 23.4 220 111-367 1-231 (266)
8 PRK12491 pyrroline-5-carboxyla 100.0 1.6E-32 3.5E-37 270.2 22.6 220 112-367 3-234 (272)
9 PRK06928 pyrroline-5-carboxyla 100.0 1.9E-29 4.2E-34 248.3 23.5 221 111-367 1-235 (277)
10 PF01450 IlvC: Acetohydroxy ac 100.0 5E-32 1.1E-36 244.6 4.5 133 294-432 1-135 (145)
11 PTZ00431 pyrroline carboxylate 100.0 2.7E-28 5.9E-33 238.0 22.3 214 112-367 4-227 (260)
12 PRK07679 pyrroline-5-carboxyla 100.0 1.5E-26 3.2E-31 227.4 25.0 220 112-366 4-235 (279)
13 PRK07634 pyrroline-5-carboxyla 100.0 1.2E-26 2.7E-31 222.0 22.5 221 112-367 5-235 (245)
14 KOG3124 Pyrroline-5-carboxylat 99.9 4E-27 8.6E-32 227.9 16.1 225 112-372 1-238 (267)
15 PLN02688 pyrroline-5-carboxyla 99.9 5.9E-26 1.3E-30 220.3 24.3 220 112-367 1-231 (266)
16 PRK07680 late competence prote 99.9 2.6E-25 5.7E-30 217.7 23.8 218 112-366 1-231 (273)
17 PRK11880 pyrroline-5-carboxyla 99.9 3.8E-25 8.1E-30 214.8 23.2 221 111-367 2-232 (267)
18 TIGR00112 proC pyrroline-5-car 99.9 1.3E-23 2.9E-28 203.7 20.0 198 141-367 10-214 (245)
19 PRK06476 pyrroline-5-carboxyla 99.9 2.9E-23 6.4E-28 201.5 21.7 216 112-367 1-224 (258)
20 PRK06545 prephenate dehydrogen 99.8 2.4E-19 5.1E-24 182.9 20.5 277 112-416 1-281 (359)
21 COG0287 TyrA Prephenate dehydr 99.8 6.8E-17 1.5E-21 160.4 21.5 195 112-329 4-201 (279)
22 PRK07417 arogenate dehydrogena 99.7 2.4E-16 5.2E-21 155.3 17.0 187 112-320 1-187 (279)
23 PRK08655 prephenate dehydrogen 99.7 1.6E-15 3.4E-20 159.1 23.0 199 112-339 1-203 (437)
24 PRK08507 prephenate dehydrogen 99.7 1.4E-15 3E-20 149.3 20.2 195 112-336 1-204 (275)
25 PRK14806 bifunctional cyclohex 99.7 1.1E-15 2.5E-20 168.5 19.8 229 112-365 4-240 (735)
26 PRK07502 cyclohexadienyl dehyd 99.7 4E-15 8.6E-20 148.2 20.8 192 112-321 7-200 (307)
27 PLN02256 arogenate dehydrogena 99.6 8.2E-15 1.8E-19 147.1 17.4 165 112-300 37-210 (304)
28 PF02153 PDH: Prephenate dehyd 99.6 2.9E-14 6.3E-19 139.5 17.0 193 126-336 1-195 (258)
29 PRK12557 H(2)-dependent methyl 99.6 2E-13 4.4E-18 139.2 23.6 251 112-393 1-296 (342)
30 PRK08818 prephenate dehydrogen 99.6 1.7E-13 3.6E-18 141.1 20.2 153 112-300 5-161 (370)
31 PRK06130 3-hydroxybutyryl-CoA 99.6 1.8E-13 3.9E-18 136.2 19.8 215 111-359 4-242 (311)
32 COG2084 MmsB 3-hydroxyisobutyr 99.6 1.5E-14 3.2E-19 144.0 11.4 193 112-336 1-204 (286)
33 PLN02712 arogenate dehydrogena 99.6 1.3E-13 2.7E-18 151.5 19.0 194 107-330 366-564 (667)
34 TIGR01724 hmd_rel H2-forming N 99.6 8.8E-13 1.9E-17 132.8 23.2 225 112-363 1-261 (341)
35 PRK11199 tyrA bifunctional cho 99.5 5.2E-13 1.1E-17 137.5 20.2 179 110-336 97-279 (374)
36 PRK05808 3-hydroxybutyryl-CoA 99.5 5.9E-13 1.3E-17 131.0 14.6 153 111-287 3-177 (282)
37 PF03807 F420_oxidored: NADP o 99.5 2.7E-13 5.9E-18 112.0 8.6 90 113-213 1-96 (96)
38 PRK07531 bifunctional 3-hydrox 99.5 3.5E-12 7.5E-17 135.7 19.3 192 111-339 4-218 (495)
39 PF03446 NAD_binding_2: NAD bi 99.4 5.4E-13 1.2E-17 121.6 10.4 149 111-286 1-155 (163)
40 PLN02712 arogenate dehydrogena 99.4 2.8E-12 6E-17 141.0 17.6 165 112-300 53-226 (667)
41 TIGR01915 npdG NADPH-dependent 99.4 6.9E-12 1.5E-16 119.5 16.4 156 112-287 1-183 (219)
42 PLN02545 3-hydroxybutyryl-CoA 99.4 5.8E-12 1.3E-16 124.8 15.7 153 111-287 4-178 (295)
43 PRK00094 gpsA NAD(P)H-dependen 99.4 8.1E-12 1.8E-16 124.0 16.7 153 111-286 1-172 (325)
44 PRK05225 ketol-acid reductoiso 99.4 1.1E-12 2.4E-17 137.2 9.4 87 318-409 233-323 (487)
45 PRK12490 6-phosphogluconate de 99.4 3E-11 6.6E-16 120.4 19.2 198 112-339 1-210 (299)
46 PRK15059 tartronate semialdehy 99.4 2.7E-11 5.9E-16 120.7 17.4 194 112-336 1-202 (292)
47 TIGR00872 gnd_rel 6-phosphoglu 99.3 6.5E-11 1.4E-15 118.0 19.1 147 112-286 1-153 (298)
48 PRK15461 NADH-dependent gamma- 99.3 2.9E-11 6.2E-16 120.5 16.4 199 111-339 1-207 (296)
49 PRK08293 3-hydroxybutyryl-CoA 99.3 2E-10 4.2E-15 113.7 19.5 216 111-362 3-247 (287)
50 TIGR01505 tartro_sem_red 2-hyd 99.3 1.1E-10 2.3E-15 115.5 17.5 192 113-338 1-204 (291)
51 PRK06035 3-hydroxyacyl-CoA deh 99.3 8.7E-11 1.9E-15 116.3 16.2 152 111-287 3-180 (291)
52 PRK09260 3-hydroxybutyryl-CoA 99.3 2.7E-10 5.9E-15 112.7 19.6 153 111-287 1-176 (288)
53 PLN02350 phosphogluconate dehy 99.3 1.1E-10 2.3E-15 124.5 17.8 153 111-287 6-168 (493)
54 PRK14618 NAD(P)H-dependent gly 99.3 3.5E-11 7.6E-16 120.9 13.0 150 112-287 5-172 (328)
55 PRK09599 6-phosphogluconate de 99.3 4.4E-11 9.5E-16 119.2 13.4 196 112-337 1-209 (301)
56 TIGR01692 HIBADH 3-hydroxyisob 99.3 1.9E-10 4.1E-15 113.9 16.8 193 116-336 1-199 (288)
57 PRK12439 NAD(P)H-dependent gly 99.3 6.4E-10 1.4E-14 113.1 20.9 229 111-375 7-268 (341)
58 PF10727 Rossmann-like: Rossma 99.3 1.4E-11 3E-16 109.5 7.6 114 112-237 11-127 (127)
59 PRK06129 3-hydroxyacyl-CoA deh 99.2 6.3E-10 1.4E-14 111.3 19.5 194 111-338 2-219 (308)
60 PRK11559 garR tartronate semia 99.2 2.9E-10 6.4E-15 112.3 16.5 196 111-336 2-205 (296)
61 TIGR00873 gnd 6-phosphoglucona 99.2 3.1E-10 6.8E-15 120.3 17.0 147 113-287 1-159 (467)
62 PTZ00142 6-phosphogluconate de 99.2 5E-10 1.1E-14 118.8 18.5 151 111-287 1-162 (470)
63 PRK07530 3-hydroxybutyryl-CoA 99.2 4.2E-10 9.2E-15 111.4 16.2 152 111-287 4-178 (292)
64 COG2085 Predicted dinucleotide 99.2 6.4E-10 1.4E-14 106.3 14.4 155 111-287 1-174 (211)
65 PRK07066 3-hydroxybutyryl-CoA 99.1 2.5E-09 5.4E-14 108.5 18.4 153 111-287 7-178 (321)
66 PRK08268 3-hydroxy-acyl-CoA de 99.1 2.2E-09 4.8E-14 114.9 18.8 210 110-360 6-246 (507)
67 PLN02858 fructose-bisphosphate 99.1 3.6E-10 7.9E-15 132.8 12.5 193 112-338 5-212 (1378)
68 PTZ00345 glycerol-3-phosphate 99.1 1.1E-08 2.5E-13 105.4 21.3 261 112-400 12-315 (365)
69 TIGR03026 NDP-sugDHase nucleot 99.1 3.5E-09 7.6E-14 110.0 17.3 200 112-336 1-241 (411)
70 PLN02858 fructose-bisphosphate 99.1 4.8E-09 1E-13 123.5 18.7 201 111-338 324-532 (1378)
71 PRK14619 NAD(P)H-dependent gly 99.0 2.2E-08 4.7E-13 100.3 20.1 79 112-214 5-85 (308)
72 KOG0409 Predicted dehydrogenas 99.0 3E-10 6.4E-15 113.4 6.4 149 112-287 36-192 (327)
73 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 1.3E-08 2.9E-13 108.9 18.6 152 111-287 5-179 (503)
74 PRK13243 glyoxylate reductase; 99.0 1.5E-09 3.2E-14 110.4 9.9 105 93-211 125-239 (333)
75 PRK07819 3-hydroxybutyryl-CoA 99.0 2E-08 4.4E-13 100.0 17.6 215 111-363 5-249 (286)
76 PF02826 2-Hacid_dh_C: D-isome 99.0 9.6E-10 2.1E-14 101.9 7.6 107 94-213 18-129 (178)
77 PRK14620 NAD(P)H-dependent gly 99.0 4.4E-08 9.5E-13 98.4 20.0 97 112-215 1-110 (326)
78 PRK11064 wecC UDP-N-acetyl-D-m 99.0 2.6E-08 5.7E-13 104.1 18.9 201 111-336 3-245 (415)
79 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 1.8E-09 4E-14 98.1 8.9 95 113-214 1-106 (157)
80 PRK06522 2-dehydropantoate 2-r 99.0 2.7E-08 5.9E-13 97.8 17.6 96 112-215 1-104 (304)
81 PRK07574 formate dehydrogenase 98.9 3.6E-09 7.9E-14 109.8 10.7 159 93-275 172-343 (385)
82 PLN03139 formate dehydrogenase 98.9 4.5E-09 9.7E-14 109.1 10.8 108 93-212 179-291 (386)
83 COG0240 GpsA Glycerol-3-phosph 98.9 8.7E-08 1.9E-12 97.3 19.2 201 111-344 1-222 (329)
84 TIGR03376 glycerol3P_DH glycer 98.9 8.4E-08 1.8E-12 98.2 18.6 233 113-376 1-279 (342)
85 COG0111 SerA Phosphoglycerate 98.9 4.4E-09 9.5E-14 106.9 8.6 150 94-268 125-284 (324)
86 PRK12480 D-lactate dehydrogena 98.9 1.1E-08 2.4E-13 104.1 11.2 94 105-214 141-237 (330)
87 PRK06436 glycerate dehydrogena 98.9 5.9E-09 1.3E-13 105.0 9.1 101 93-211 106-208 (303)
88 KOG2380 Prephenate dehydrogena 98.9 2.6E-08 5.6E-13 101.0 13.5 165 112-300 53-226 (480)
89 PRK08605 D-lactate dehydrogena 98.9 8.4E-09 1.8E-13 104.8 9.8 94 106-214 142-239 (332)
90 COG1052 LdhA Lactate dehydroge 98.9 8.4E-09 1.8E-13 104.8 9.4 135 90-239 121-269 (324)
91 PF02737 3HCDH_N: 3-hydroxyacy 98.8 7.4E-08 1.6E-12 89.9 14.6 150 113-287 1-173 (180)
92 PRK15469 ghrA bifunctional gly 98.8 1E-08 2.2E-13 103.6 9.4 104 94-212 121-226 (312)
93 PRK15409 bifunctional glyoxyla 98.8 1.2E-08 2.6E-13 103.6 9.7 157 92-274 123-294 (323)
94 TIGR01327 PGDH D-3-phosphoglyc 98.8 9.7E-09 2.1E-13 110.4 9.6 106 93-211 120-228 (525)
95 PRK08410 2-hydroxyacid dehydro 98.8 2.3E-08 4.9E-13 100.9 11.4 158 93-277 121-295 (311)
96 PRK13581 D-3-phosphoglycerate 98.8 1.3E-08 2.9E-13 109.4 9.7 105 93-211 122-229 (526)
97 PRK12921 2-dehydropantoate 2-r 98.8 2.2E-07 4.8E-12 91.7 17.4 96 112-215 1-106 (305)
98 PRK08229 2-dehydropantoate 2-r 98.8 7.9E-08 1.7E-12 96.7 14.3 97 111-215 2-111 (341)
99 COG4007 Predicted dehydrogenas 98.8 2.7E-07 5.9E-12 90.7 16.9 225 111-363 1-262 (340)
100 PLN02928 oxidoreductase family 98.8 1.8E-08 3.8E-13 103.2 9.0 163 93-275 143-321 (347)
101 PF14748 P5CR_dimer: Pyrroline 98.7 3.8E-08 8.3E-13 84.8 8.1 68 299-367 2-75 (107)
102 KOG0069 Glyoxylate/hydroxypyru 98.7 4.4E-08 9.5E-13 99.8 9.9 136 86-237 136-284 (336)
103 PRK06444 prephenate dehydrogen 98.7 3.3E-07 7.1E-12 87.2 13.8 126 112-300 1-127 (197)
104 PRK06932 glycerate dehydrogena 98.7 1.7E-07 3.7E-12 94.7 12.2 159 94-278 124-299 (314)
105 TIGR02437 FadB fatty oxidation 98.7 7E-07 1.5E-11 99.5 18.0 214 109-359 311-550 (714)
106 TIGR02441 fa_ox_alpha_mit fatt 98.7 5.9E-07 1.3E-11 100.4 17.4 212 109-358 333-570 (737)
107 PRK06487 glycerate dehydrogena 98.7 6.6E-08 1.4E-12 97.8 8.7 155 93-276 124-295 (317)
108 PRK11730 fadB multifunctional 98.7 1.9E-06 4.2E-11 96.0 21.0 214 109-359 311-550 (715)
109 PRK15182 Vi polysaccharide bio 98.7 8.3E-07 1.8E-11 93.3 17.2 201 112-336 7-241 (425)
110 PRK11790 D-3-phosphoglycerate 98.6 7.2E-08 1.6E-12 100.8 8.7 103 93-211 133-238 (409)
111 PRK11154 fadJ multifunctional 98.6 1.3E-06 2.8E-11 97.2 18.4 212 110-360 308-547 (708)
112 TIGR02440 FadJ fatty oxidation 98.6 1.4E-06 3.1E-11 96.8 18.5 211 110-360 303-542 (699)
113 cd01065 NAD_bind_Shikimate_DH 98.6 4.5E-08 9.7E-13 87.1 4.8 99 108-213 17-117 (155)
114 TIGR02853 spore_dpaA dipicolin 98.6 3.5E-07 7.6E-12 91.4 11.2 94 106-212 147-240 (287)
115 COG1250 FadB 3-hydroxyacyl-CoA 98.6 2.8E-06 6.1E-11 85.9 17.6 152 111-287 3-177 (307)
116 PRK09287 6-phosphogluconate de 98.6 2.1E-06 4.6E-11 91.2 17.1 139 122-287 1-150 (459)
117 KOG0068 D-3-phosphoglycerate d 98.5 7.1E-07 1.5E-11 90.7 12.3 157 91-271 126-292 (406)
118 PRK06249 2-dehydropantoate 2-r 98.5 6.1E-06 1.3E-10 82.8 18.4 153 112-287 6-180 (313)
119 PRK11861 bifunctional prephena 98.5 9.5E-07 2.1E-11 97.7 13.6 136 182-325 1-137 (673)
120 PRK15438 erythronate-4-phospha 98.5 2.9E-07 6.2E-12 95.5 8.0 90 106-212 112-207 (378)
121 PRK00257 erythronate-4-phospha 98.5 3.2E-07 6.9E-12 95.3 7.6 89 106-211 112-206 (381)
122 PLN02306 hydroxypyruvate reduc 98.5 7E-07 1.5E-11 92.9 10.0 100 106-211 161-271 (386)
123 PRK15057 UDP-glucose 6-dehydro 98.5 3.6E-06 7.9E-11 87.6 15.1 93 112-215 1-120 (388)
124 TIGR01723 hmd_TIGR 5,10-methen 98.4 1.1E-05 2.4E-10 80.4 17.2 174 159-363 124-308 (340)
125 PF00670 AdoHcyase_NAD: S-aden 98.4 6.7E-07 1.5E-11 82.7 8.0 95 106-215 19-113 (162)
126 COG1023 Gnd Predicted 6-phosph 98.4 3.6E-06 7.7E-11 82.4 13.1 256 112-406 1-288 (300)
127 PRK00961 H(2)-dependent methyl 98.4 1.7E-05 3.8E-10 78.8 17.2 174 159-363 126-310 (342)
128 PTZ00075 Adenosylhomocysteinas 98.3 2.3E-06 5E-11 91.0 10.7 128 91-243 242-371 (476)
129 PF03721 UDPG_MGDP_dh_N: UDP-g 98.3 1.6E-06 3.5E-11 81.4 8.0 95 112-214 1-122 (185)
130 PRK13304 L-aspartate dehydroge 98.3 2.6E-06 5.7E-11 84.0 9.8 92 111-213 1-94 (265)
131 PLN02353 probable UDP-glucose 98.3 2.6E-05 5.7E-10 83.2 16.1 205 111-336 1-249 (473)
132 PRK13302 putative L-aspartate 98.2 5.6E-06 1.2E-10 82.1 10.1 92 112-213 7-100 (271)
133 TIGR00936 ahcY adenosylhomocys 98.2 7.2E-06 1.6E-10 85.9 11.0 93 107-215 192-285 (406)
134 PRK08306 dipicolinate synthase 98.2 8E-06 1.7E-10 82.0 10.4 94 106-212 148-241 (296)
135 PRK14194 bifunctional 5,10-met 98.2 5.2E-06 1.1E-10 83.8 8.7 74 106-211 155-230 (301)
136 PRK05476 S-adenosyl-L-homocyst 98.2 1.1E-05 2.5E-10 84.9 10.7 93 107-215 209-302 (425)
137 PLN02494 adenosylhomocysteinas 98.1 1.5E-05 3.2E-10 84.9 10.3 93 107-214 251-343 (477)
138 PF01408 GFO_IDH_MocA: Oxidore 98.1 2.8E-05 6.1E-10 66.2 9.7 80 113-200 2-84 (120)
139 PF02558 ApbA: Ketopantoate re 98.1 1.5E-05 3.2E-10 70.9 8.2 95 114-216 1-106 (151)
140 cd00401 AdoHcyase S-adenosyl-L 98.1 2.6E-05 5.6E-10 82.0 11.0 91 107-213 199-290 (413)
141 cd05213 NAD_bind_Glutamyl_tRNA 98.0 1.7E-05 3.6E-10 80.0 9.1 95 108-211 176-272 (311)
142 COG1893 ApbA Ketopantoate redu 98.0 0.00018 3.9E-09 72.8 16.3 96 112-215 1-105 (307)
143 PRK08269 3-hydroxybutyryl-CoA 98.0 0.0006 1.3E-08 69.1 19.2 206 122-361 1-243 (314)
144 COG0362 Gnd 6-phosphogluconate 98.0 2.3E-05 5.1E-10 81.3 8.6 186 112-335 4-216 (473)
145 smart00859 Semialdhyde_dh Semi 98.0 3.1E-05 6.7E-10 67.0 7.9 97 113-214 1-101 (122)
146 COG4074 Mth H2-forming N5,N10- 98.0 0.00048 1E-08 67.1 16.7 175 159-363 124-308 (343)
147 PRK06141 ornithine cyclodeamin 97.9 2.2E-05 4.8E-10 79.3 7.2 86 112-209 126-216 (314)
148 PRK14188 bifunctional 5,10-met 97.9 4.2E-05 9.1E-10 77.2 8.5 74 107-211 155-229 (296)
149 PRK05708 2-dehydropantoate 2-r 97.8 7.3E-05 1.6E-09 75.1 9.3 98 112-216 3-109 (305)
150 PRK00048 dihydrodipicolinate r 97.8 9.1E-05 2E-09 72.8 9.7 160 111-285 1-170 (257)
151 TIGR02371 ala_DH_arch alanine 97.8 4.9E-05 1.1E-09 77.3 7.6 94 111-214 128-224 (325)
152 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 6.6E-05 1.4E-09 71.3 7.3 71 105-187 23-94 (200)
153 PF01488 Shikimate_DH: Shikima 97.8 6.2E-05 1.3E-09 66.9 6.6 79 106-191 8-88 (135)
154 PRK00045 hemA glutamyl-tRNA re 97.7 5.9E-05 1.3E-09 79.2 6.7 75 107-190 179-254 (423)
155 COG0677 WecC UDP-N-acetyl-D-ma 97.7 0.00053 1.1E-08 71.5 13.3 151 112-286 10-200 (436)
156 KOG2711 Glycerol-3-phosphate d 97.7 0.0028 6.1E-08 65.0 18.0 105 112-216 22-144 (372)
157 COG5495 Uncharacterized conser 97.7 0.00049 1.1E-08 67.3 11.9 213 112-356 11-229 (289)
158 PRK14179 bifunctional 5,10-met 97.7 0.00014 2.9E-09 73.1 8.1 74 107-211 155-229 (284)
159 PRK13303 L-aspartate dehydroge 97.7 0.00028 6.1E-09 69.7 10.2 91 111-213 1-94 (265)
160 PF01113 DapB_N: Dihydrodipico 97.6 0.00016 3.4E-09 63.5 7.3 93 112-216 1-103 (124)
161 KOG2304 3-hydroxyacyl-CoA dehy 97.6 0.00044 9.5E-09 67.6 10.0 153 111-287 11-191 (298)
162 PRK07340 ornithine cyclodeamin 97.6 0.00019 4.2E-09 72.3 7.6 90 112-214 126-219 (304)
163 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00015 3.2E-09 76.2 6.6 76 107-191 177-253 (417)
164 TIGR00036 dapB dihydrodipicoli 97.5 0.00063 1.4E-08 67.3 10.7 119 111-243 1-131 (266)
165 PRK06223 malate dehydrogenase; 97.5 0.00093 2E-08 66.8 10.8 69 111-186 2-78 (307)
166 COG2423 Predicted ornithine cy 97.5 0.00039 8.5E-09 71.2 8.2 95 110-214 129-227 (330)
167 PLN00203 glutamyl-tRNA reducta 97.4 0.00024 5.1E-09 76.9 7.0 85 108-199 264-353 (519)
168 TIGR00518 alaDH alanine dehydr 97.4 0.00064 1.4E-08 70.4 9.5 98 108-212 165-267 (370)
169 PRK08618 ornithine cyclodeamin 97.4 0.00038 8.3E-09 70.6 7.7 91 112-214 128-223 (325)
170 PRK06407 ornithine cyclodeamin 97.4 0.00031 6.8E-09 70.8 7.0 93 111-214 117-214 (301)
171 PRK07589 ornithine cyclodeamin 97.4 0.00034 7.4E-09 72.1 7.1 96 110-214 128-227 (346)
172 TIGR01921 DAP-DH diaminopimela 97.4 0.00046 1E-08 70.5 7.6 85 112-209 4-88 (324)
173 COG1712 Predicted dinucleotide 97.4 0.0011 2.5E-08 64.6 9.6 92 112-214 1-94 (255)
174 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.00043 9.3E-09 64.6 6.6 96 107-211 25-128 (194)
175 PF01118 Semialdhyde_dh: Semia 97.3 0.0006 1.3E-08 59.3 6.8 92 113-214 1-99 (121)
176 PRK13940 glutamyl-tRNA reducta 97.3 0.00039 8.4E-09 73.2 6.3 75 106-189 177-253 (414)
177 PRK04207 glyceraldehyde-3-phos 97.3 0.0011 2.5E-08 67.9 9.5 96 111-214 1-111 (341)
178 PRK06046 alanine dehydrogenase 97.3 0.00061 1.3E-08 69.3 7.3 91 112-214 130-225 (326)
179 TIGR01763 MalateDH_bact malate 97.3 0.0015 3.3E-08 65.9 10.1 69 112-187 2-78 (305)
180 COG0673 MviM Predicted dehydro 97.3 0.00093 2E-08 66.6 8.3 86 112-209 4-95 (342)
181 PRK12549 shikimate 5-dehydroge 97.3 0.00058 1.2E-08 68.3 6.7 77 107-190 124-204 (284)
182 COG0373 HemA Glutamyl-tRNA red 97.2 0.00064 1.4E-08 71.5 6.6 72 107-187 175-247 (414)
183 PRK06823 ornithine cyclodeamin 97.2 0.00083 1.8E-08 68.3 7.2 94 110-214 127-224 (315)
184 TIGR03215 ac_ald_DH_ac acetald 97.2 0.0031 6.7E-08 63.5 10.9 90 112-212 2-95 (285)
185 TIGR00507 aroE shikimate 5-deh 97.2 0.00053 1.1E-08 67.6 5.3 93 108-211 115-213 (270)
186 PRK08300 acetaldehyde dehydrog 97.1 0.0029 6.2E-08 64.2 10.2 91 112-213 5-102 (302)
187 TIGR02992 ectoine_eutC ectoine 97.1 0.0011 2.3E-08 67.5 7.1 89 112-211 130-223 (326)
188 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0014 3E-08 61.0 7.1 75 106-211 40-115 (168)
189 KOG2653 6-phosphogluconate deh 97.1 0.00071 1.5E-08 69.7 5.4 193 112-335 7-220 (487)
190 COG0499 SAM1 S-adenosylhomocys 97.1 0.0012 2.6E-08 68.1 7.1 94 107-215 206-299 (420)
191 cd05311 NAD_bind_2_malic_enz N 97.0 0.003 6.4E-08 61.2 9.0 91 107-210 22-126 (226)
192 cd05291 HicDH_like L-2-hydroxy 97.0 0.0031 6.7E-08 63.4 9.4 69 112-188 1-78 (306)
193 PF02629 CoA_binding: CoA bind 97.0 0.0014 3.1E-08 54.9 5.7 90 112-213 4-96 (96)
194 PF02423 OCD_Mu_crystall: Orni 97.0 0.0012 2.5E-08 67.0 6.1 95 111-214 128-226 (313)
195 COG1748 LYS9 Saccharopine dehy 97.0 0.0023 4.9E-08 67.0 8.0 79 111-196 1-86 (389)
196 PF13380 CoA_binding_2: CoA bi 97.0 0.0035 7.7E-08 54.6 8.1 86 112-214 1-90 (116)
197 PRK13301 putative L-aspartate 97.0 0.0047 1E-07 61.6 9.9 92 112-214 3-96 (267)
198 PRK00436 argC N-acetyl-gamma-g 97.0 0.0037 8E-08 64.1 9.5 95 111-213 2-100 (343)
199 PRK08291 ectoine utilization p 96.9 0.0018 4E-08 65.8 7.0 88 112-210 133-225 (330)
200 PF02254 TrkA_N: TrkA-N domain 96.9 0.0097 2.1E-07 50.4 10.2 93 114-213 1-98 (116)
201 PRK06199 ornithine cyclodeamin 96.9 0.0024 5.2E-08 66.6 7.6 91 109-209 153-256 (379)
202 PRK09310 aroDE bifunctional 3- 96.9 0.0021 4.6E-08 68.8 7.4 74 107-190 329-402 (477)
203 PTZ00117 malate dehydrogenase; 96.9 0.0047 1E-07 62.7 9.5 71 108-186 3-81 (319)
204 COG0569 TrkA K+ transport syst 96.9 0.0054 1.2E-07 59.3 9.3 83 112-200 1-88 (225)
205 PRK00258 aroE shikimate 5-dehy 96.9 0.0022 4.9E-08 63.6 6.8 77 107-191 120-198 (278)
206 PRK14175 bifunctional 5,10-met 96.9 0.0028 6.1E-08 63.8 7.5 76 106-212 154-230 (286)
207 COG1004 Ugd Predicted UDP-gluc 96.9 0.0049 1.1E-07 64.5 9.2 90 112-209 1-117 (414)
208 PRK14189 bifunctional 5,10-met 96.8 0.0026 5.6E-08 64.0 6.9 74 107-211 155-229 (285)
209 TIGR00745 apbA_panE 2-dehydrop 96.8 0.026 5.7E-07 55.1 13.8 86 121-215 1-97 (293)
210 PF00056 Ldh_1_N: lactate/mala 96.8 0.0054 1.2E-07 55.1 8.1 70 112-187 1-78 (141)
211 PRK11579 putative oxidoreducta 96.8 0.0073 1.6E-07 61.4 10.0 76 112-198 5-84 (346)
212 PRK09496 trkA potassium transp 96.8 0.0065 1.4E-07 63.3 9.8 79 112-197 1-84 (453)
213 PTZ00082 L-lactate dehydrogena 96.8 0.0068 1.5E-07 61.8 9.6 68 109-186 5-82 (321)
214 cd05191 NAD_bind_amino_acid_DH 96.8 0.0057 1.2E-07 50.1 7.4 66 106-211 19-85 (86)
215 cd05292 LDH_2 A subgroup of L- 96.8 0.0062 1.4E-07 61.5 9.1 70 112-188 1-77 (308)
216 PRK06718 precorrin-2 dehydroge 96.7 0.008 1.7E-07 57.3 8.6 84 107-199 7-91 (202)
217 TIGR01809 Shik-DH-AROM shikima 96.7 0.0038 8.1E-08 62.3 6.5 77 107-190 122-202 (282)
218 TIGR02717 AcCoA-syn-alpha acet 96.6 0.0068 1.5E-07 64.3 8.5 87 112-215 8-100 (447)
219 KOG2305 3-hydroxyacyl-CoA dehy 96.6 0.068 1.5E-06 52.7 14.3 206 112-343 4-239 (313)
220 PRK10206 putative oxidoreducta 96.6 0.0087 1.9E-07 61.2 8.7 80 112-198 2-84 (344)
221 cd01339 LDH-like_MDH L-lactate 96.5 0.0099 2.2E-07 59.5 8.8 66 114-186 1-74 (300)
222 PRK14192 bifunctional 5,10-met 96.5 0.0064 1.4E-07 61.1 7.3 75 106-211 155-230 (283)
223 COG2344 AT-rich DNA-binding pr 96.5 0.011 2.4E-07 56.4 8.3 105 112-236 85-194 (211)
224 COG0686 Ald Alanine dehydrogen 96.5 0.0068 1.5E-07 61.8 7.2 95 112-212 169-268 (371)
225 TIGR01850 argC N-acetyl-gamma- 96.5 0.012 2.7E-07 60.4 9.3 94 112-213 1-100 (346)
226 PRK04148 hypothetical protein; 96.4 0.031 6.8E-07 50.4 10.2 92 109-209 16-108 (134)
227 COG0169 AroE Shikimate 5-dehyd 96.4 0.0069 1.5E-07 60.9 6.6 97 106-211 122-225 (283)
228 PF13460 NAD_binding_10: NADH( 96.3 0.029 6.2E-07 50.7 9.8 66 114-188 1-70 (183)
229 PLN02819 lysine-ketoglutarate 96.3 0.008 1.7E-07 69.9 7.4 84 111-197 569-667 (1042)
230 PRK00066 ldh L-lactate dehydro 96.2 0.026 5.7E-07 57.3 9.8 70 112-187 7-82 (315)
231 KOG1370 S-adenosylhomocysteine 96.2 0.02 4.4E-07 58.3 8.8 137 60-215 168-304 (434)
232 TIGR00561 pntA NAD(P) transhyd 96.2 0.018 3.9E-07 62.3 8.9 94 112-212 165-284 (511)
233 PRK10792 bifunctional 5,10-met 96.2 0.017 3.7E-07 58.2 8.1 76 106-212 155-231 (285)
234 PRK05678 succinyl-CoA syntheta 96.2 0.025 5.4E-07 57.2 9.3 92 112-217 9-103 (291)
235 PTZ00187 succinyl-CoA syntheta 96.2 0.026 5.7E-07 57.7 9.5 119 112-244 30-153 (317)
236 PRK14982 acyl-ACP reductase; P 96.2 0.01 2.2E-07 61.2 6.5 93 106-211 151-245 (340)
237 cd05297 GH4_alpha_glucosidase_ 96.2 0.0083 1.8E-07 63.3 6.0 81 112-195 1-91 (423)
238 PRK05472 redox-sensing transcr 96.2 0.0069 1.5E-07 57.8 4.9 81 112-199 85-167 (213)
239 cd05212 NAD_bind_m-THF_DH_Cycl 96.1 0.021 4.6E-07 51.7 7.4 75 106-211 24-99 (140)
240 PRK06719 precorrin-2 dehydroge 96.1 0.018 4E-07 52.8 7.1 87 101-200 5-92 (157)
241 PRK03659 glutathione-regulated 96.0 0.032 6.8E-07 61.5 9.7 75 112-193 401-479 (601)
242 TIGR01019 sucCoAalpha succinyl 96.0 0.028 6.2E-07 56.6 8.5 91 112-216 7-100 (286)
243 PF05368 NmrA: NmrA-like famil 96.0 0.044 9.6E-07 51.8 9.4 68 114-187 1-73 (233)
244 cd00650 LDH_MDH_like NAD-depen 96.0 0.036 7.7E-07 54.4 9.0 65 114-186 1-78 (263)
245 PF13241 NAD_binding_7: Putati 95.9 0.021 4.4E-07 48.5 6.3 76 107-197 4-79 (103)
246 PRK10669 putative cation:proto 95.9 0.036 7.8E-07 60.2 9.6 74 112-192 418-495 (558)
247 PRK09496 trkA potassium transp 95.9 0.062 1.3E-06 56.1 10.8 93 112-211 232-330 (453)
248 cd01079 NAD_bind_m-THF_DH NAD 95.8 0.024 5.3E-07 54.3 6.7 92 106-212 58-156 (197)
249 TIGR02356 adenyl_thiF thiazole 95.8 0.04 8.7E-07 52.3 8.3 87 106-199 17-132 (202)
250 PRK09424 pntA NAD(P) transhydr 95.8 0.031 6.7E-07 60.6 8.4 96 108-211 163-284 (509)
251 TIGR01546 GAPDH-II_archae glyc 95.7 0.039 8.4E-07 56.8 8.3 76 114-194 1-91 (333)
252 TIGR02354 thiF_fam2 thiamine b 95.7 0.072 1.6E-06 50.7 9.6 102 105-214 16-146 (200)
253 PF03435 Saccharop_dh: Sacchar 95.7 0.031 6.7E-07 57.5 7.6 78 114-197 1-86 (386)
254 PF02882 THF_DHG_CYH_C: Tetrah 95.6 0.054 1.2E-06 50.2 8.1 75 106-211 32-107 (160)
255 PRK14191 bifunctional 5,10-met 95.5 0.033 7.2E-07 56.2 7.0 75 106-211 153-228 (285)
256 cd05211 NAD_bind_Glu_Leu_Phe_V 95.5 0.039 8.5E-07 53.3 7.1 79 106-191 19-110 (217)
257 PRK03562 glutathione-regulated 95.5 0.066 1.4E-06 59.3 9.6 75 112-193 401-479 (621)
258 PRK00683 murD UDP-N-acetylmura 95.4 0.043 9.3E-07 57.4 7.7 67 112-189 4-70 (418)
259 cd05293 LDH_1 A subgroup of L- 95.4 0.045 9.8E-07 55.6 7.6 68 112-186 4-79 (312)
260 PRK14178 bifunctional 5,10-met 95.4 0.05 1.1E-06 54.8 7.5 76 106-212 148-224 (279)
261 PRK12548 shikimate 5-dehydroge 95.4 0.042 9.1E-07 55.0 7.0 78 107-191 123-212 (289)
262 TIGR01470 cysG_Nterm siroheme 95.3 0.12 2.5E-06 49.5 9.6 82 107-197 6-89 (205)
263 PRK05442 malate dehydrogenase; 95.2 0.16 3.4E-06 52.1 10.8 72 110-187 3-89 (326)
264 PRK00676 hemA glutamyl-tRNA re 95.2 0.068 1.5E-06 55.2 7.9 64 106-186 170-234 (338)
265 TIGR01761 thiaz-red thiazoliny 95.1 0.09 1.9E-06 54.3 8.8 86 112-209 4-94 (343)
266 PRK14176 bifunctional 5,10-met 95.1 0.086 1.9E-06 53.3 8.4 75 106-211 160-235 (287)
267 PRK12475 thiamine/molybdopteri 95.1 0.13 2.8E-06 52.9 9.8 89 105-200 19-138 (338)
268 PLN02602 lactate dehydrogenase 95.1 0.16 3.4E-06 52.7 10.4 67 112-186 38-113 (350)
269 PTZ00325 malate dehydrogenase; 95.0 0.036 7.8E-07 56.7 5.6 75 105-188 3-86 (321)
270 PRK00421 murC UDP-N-acetylmura 95.0 0.064 1.4E-06 56.7 7.6 70 106-185 3-73 (461)
271 PF01262 AlaDh_PNT_C: Alanine 95.0 0.028 6.2E-07 51.6 4.3 100 105-212 15-139 (168)
272 PRK12749 quinate/shikimate deh 95.0 0.067 1.5E-06 53.8 7.3 78 107-191 121-209 (288)
273 cd05294 LDH-like_MDH_nadp A la 95.0 0.11 2.4E-06 52.5 8.8 68 112-187 1-81 (309)
274 cd00300 LDH_like L-lactate deh 94.9 0.1 2.2E-06 52.6 8.2 68 114-187 1-75 (300)
275 cd01338 MDH_choloroplast_like 94.9 0.084 1.8E-06 53.9 7.7 70 112-187 3-87 (322)
276 PRK14183 bifunctional 5,10-met 94.9 0.084 1.8E-06 53.2 7.5 74 107-211 154-228 (281)
277 PRK06270 homoserine dehydrogen 94.6 0.1 2.2E-06 53.6 7.6 99 112-210 3-123 (341)
278 PRK14173 bifunctional 5,10-met 94.6 0.11 2.3E-06 52.6 7.5 74 107-211 152-226 (287)
279 PRK14186 bifunctional 5,10-met 94.6 0.11 2.3E-06 52.8 7.5 74 107-211 155-229 (297)
280 TIGR01759 MalateDH-SF1 malate 94.6 0.25 5.3E-06 50.6 10.2 70 112-187 4-88 (323)
281 cd01076 NAD_bind_1_Glu_DH NAD( 94.6 0.07 1.5E-06 51.9 6.0 32 106-144 27-58 (227)
282 PRK01710 murD UDP-N-acetylmura 94.5 0.082 1.8E-06 56.0 6.7 72 105-185 9-84 (458)
283 PLN00112 malate dehydrogenase 94.5 0.37 8.1E-06 51.5 11.5 75 112-187 101-185 (444)
284 PF03720 UDPG_MGDP_dh_C: UDP-g 94.4 0.15 3.2E-06 43.5 7.0 83 121-214 17-103 (106)
285 PRK14172 bifunctional 5,10-met 94.4 0.13 2.7E-06 51.9 7.4 74 107-211 155-229 (278)
286 PRK14170 bifunctional 5,10-met 94.4 0.13 2.8E-06 52.0 7.5 74 107-211 154-228 (284)
287 PLN02516 methylenetetrahydrofo 94.4 0.12 2.6E-06 52.5 7.3 74 107-211 164-238 (299)
288 PRK14177 bifunctional 5,10-met 94.3 0.14 3E-06 51.8 7.6 74 107-211 156-230 (284)
289 PRK14169 bifunctional 5,10-met 94.3 0.13 2.9E-06 51.8 7.5 74 107-211 153-227 (282)
290 PF00185 OTCace: Aspartate/orn 94.3 0.42 9.1E-06 43.8 10.2 69 109-188 1-83 (158)
291 COG0190 FolD 5,10-methylene-te 94.3 0.13 2.8E-06 51.9 7.3 75 106-211 152-227 (283)
292 cd05290 LDH_3 A subgroup of L- 94.3 0.1 2.2E-06 53.0 6.7 68 113-187 1-77 (307)
293 COG1064 AdhP Zn-dependent alco 94.3 0.26 5.7E-06 50.9 9.6 90 109-210 166-257 (339)
294 PRK00141 murD UDP-N-acetylmura 94.3 0.1 2.2E-06 55.6 6.9 71 106-185 11-81 (473)
295 PRK14027 quinate/shikimate deh 94.3 0.095 2.1E-06 52.6 6.3 77 107-190 124-206 (283)
296 PF00899 ThiF: ThiF family; I 94.2 0.13 2.8E-06 45.3 6.3 30 112-147 3-33 (135)
297 PRK14106 murD UDP-N-acetylmura 94.2 0.14 3.1E-06 53.6 7.7 71 108-187 3-77 (450)
298 cd01336 MDH_cytoplasmic_cytoso 94.1 0.17 3.7E-06 51.7 7.9 75 112-186 3-86 (325)
299 COG1063 Tdh Threonine dehydrog 94.1 0.25 5.3E-06 50.7 9.0 91 112-211 170-268 (350)
300 PRK14190 bifunctional 5,10-met 94.1 0.16 3.5E-06 51.2 7.5 74 107-211 155-229 (284)
301 PF10728 DUF2520: Domain of un 94.1 0.38 8.1E-06 43.2 9.1 95 263-367 4-99 (132)
302 KOG2741 Dimeric dihydrodiol de 94.0 0.31 6.7E-06 50.4 9.3 85 112-200 7-94 (351)
303 cd00757 ThiF_MoeB_HesA_family 93.9 0.16 3.5E-06 48.9 7.0 27 106-133 17-43 (228)
304 PRK14180 bifunctional 5,10-met 93.9 0.18 3.9E-06 50.9 7.4 75 106-211 154-229 (282)
305 PRK14171 bifunctional 5,10-met 93.9 0.23 4.9E-06 50.3 8.1 74 107-211 156-230 (288)
306 PRK01438 murD UDP-N-acetylmura 93.9 0.15 3.2E-06 54.1 7.2 70 107-186 13-86 (480)
307 cd08230 glucose_DH Glucose deh 93.9 0.52 1.1E-05 47.6 10.8 93 109-211 172-268 (355)
308 PRK14166 bifunctional 5,10-met 93.8 0.19 4E-06 50.8 7.4 74 107-211 154-228 (282)
309 PRK08374 homoserine dehydrogen 93.7 2.1 4.5E-05 44.0 15.0 95 112-209 3-119 (336)
310 TIGR01851 argC_other N-acetyl- 93.7 1.7 3.7E-05 44.6 14.1 157 112-321 2-159 (310)
311 cd01485 E1-1_like Ubiquitin ac 93.7 0.32 7E-06 46.1 8.4 36 105-147 14-50 (198)
312 cd01492 Aos1_SUMO Ubiquitin ac 93.7 0.31 6.7E-06 46.2 8.3 36 105-147 16-52 (197)
313 PRK01390 murD UDP-N-acetylmura 93.7 0.18 3.9E-06 53.3 7.3 66 107-184 6-71 (460)
314 PRK15076 alpha-galactosidase; 93.6 0.095 2.1E-06 55.7 5.2 76 111-189 1-86 (431)
315 TIGR01772 MDH_euk_gproteo mala 93.6 0.33 7.1E-06 49.5 8.9 68 113-188 1-77 (312)
316 COG0289 DapB Dihydrodipicolina 93.6 0.32 7E-06 48.6 8.5 161 111-285 2-179 (266)
317 PRK07688 thiamine/molybdopteri 93.6 0.37 7.9E-06 49.7 9.3 88 105-199 19-137 (339)
318 cd00704 MDH Malate dehydrogena 93.6 0.2 4.3E-06 51.3 7.3 64 113-186 2-84 (323)
319 PRK14187 bifunctional 5,10-met 93.6 0.21 4.5E-06 50.7 7.3 74 107-211 157-231 (294)
320 TIGR01758 MDH_euk_cyt malate d 93.6 0.18 4E-06 51.5 7.1 69 113-187 1-84 (324)
321 PRK14174 bifunctional 5,10-met 93.6 0.21 4.5E-06 50.8 7.2 78 107-211 156-234 (295)
322 PRK14182 bifunctional 5,10-met 93.6 0.24 5.2E-06 50.0 7.6 74 107-211 154-228 (282)
323 PRK14193 bifunctional 5,10-met 93.5 0.23 4.9E-06 50.2 7.4 74 107-211 155-231 (284)
324 PRK05562 precorrin-2 dehydroge 93.5 0.6 1.3E-05 45.6 10.1 98 92-199 8-106 (223)
325 COG1648 CysG Siroheme synthase 93.5 0.46 1E-05 45.9 9.2 82 106-196 8-91 (210)
326 PLN02897 tetrahydrofolate dehy 93.5 0.21 4.6E-06 51.7 7.2 74 107-211 211-285 (345)
327 PLN02520 bifunctional 3-dehydr 93.5 0.17 3.7E-06 55.1 6.9 75 108-191 377-452 (529)
328 PLN02616 tetrahydrofolate dehy 93.4 0.21 4.4E-06 52.1 7.1 74 107-211 228-302 (364)
329 PRK06349 homoserine dehydrogen 93.4 0.15 3.3E-06 53.9 6.2 91 112-210 4-102 (426)
330 COG0039 Mdh Malate/lactate deh 93.3 0.57 1.2E-05 48.0 9.9 71 112-186 1-77 (313)
331 PLN00125 Succinyl-CoA ligase [ 93.2 0.45 9.7E-06 48.5 9.0 118 112-243 13-133 (300)
332 PRK05086 malate dehydrogenase; 93.2 0.48 1E-05 48.1 9.3 72 112-188 1-79 (312)
333 PRK03369 murD UDP-N-acetylmura 93.1 0.26 5.5E-06 52.9 7.5 71 106-186 8-78 (488)
334 PRK02318 mannitol-1-phosphate 93.1 0.17 3.7E-06 52.5 6.0 84 112-202 1-104 (381)
335 cd01487 E1_ThiF_like E1_ThiF_l 93.1 0.62 1.3E-05 43.3 9.1 30 113-148 1-31 (174)
336 PF03447 NAD_binding_3: Homose 93.1 0.48 1E-05 40.5 7.8 82 118-209 1-87 (117)
337 cd01483 E1_enzyme_family Super 93.1 0.63 1.4E-05 41.2 8.8 29 113-147 1-30 (143)
338 TIGR03366 HpnZ_proposed putati 93.0 0.68 1.5E-05 45.2 9.8 91 109-211 120-217 (280)
339 PRK08644 thiamine biosynthesis 93.0 0.43 9.4E-06 45.8 8.2 36 105-147 23-59 (212)
340 PF03059 NAS: Nicotianamine sy 92.9 0.47 1E-05 47.8 8.6 96 112-215 122-235 (276)
341 PLN02353 probable UDP-glucose 92.9 0.6 1.3E-05 50.3 9.9 100 107-214 321-449 (473)
342 PLN02968 Probable N-acetyl-gam 92.9 0.3 6.6E-06 51.1 7.4 93 112-214 39-136 (381)
343 PRK12550 shikimate 5-dehydroge 92.8 0.28 6E-06 49.1 6.8 68 112-191 123-191 (272)
344 PRK14185 bifunctional 5,10-met 92.8 0.33 7.1E-06 49.3 7.3 74 107-211 154-232 (293)
345 PRK08762 molybdopterin biosynt 92.8 0.63 1.4E-05 48.3 9.6 88 105-199 130-246 (376)
346 TIGR00670 asp_carb_tr aspartat 92.8 0.4 8.7E-06 48.7 8.0 70 107-185 147-223 (301)
347 PRK14184 bifunctional 5,10-met 92.8 0.23 5.1E-06 50.2 6.2 74 107-211 154-232 (286)
348 PRK05690 molybdopterin biosynt 92.8 0.47 1E-05 46.5 8.2 28 105-133 27-54 (245)
349 PRK08306 dipicolinate synthase 92.8 0.41 8.9E-06 48.2 8.0 84 112-209 3-98 (296)
350 TIGR01202 bchC 2-desacetyl-2-h 92.7 0.59 1.3E-05 46.5 9.0 87 109-211 144-230 (308)
351 PRK02472 murD UDP-N-acetylmura 92.7 0.33 7.1E-06 50.8 7.4 70 108-186 3-76 (447)
352 PLN00106 malate dehydrogenase 92.6 0.25 5.4E-06 50.6 6.3 70 112-187 19-95 (323)
353 PRK08328 hypothetical protein; 92.6 0.66 1.4E-05 45.0 9.0 28 105-133 22-49 (231)
354 PRK11863 N-acetyl-gamma-glutam 92.6 0.64 1.4E-05 47.6 9.2 154 112-319 3-158 (313)
355 PRK05671 aspartate-semialdehyd 92.6 0.36 7.8E-06 49.7 7.4 87 112-214 5-99 (336)
356 TIGR01745 asd_gamma aspartate- 92.6 0.97 2.1E-05 47.3 10.6 170 112-325 1-179 (366)
357 PRK02006 murD UDP-N-acetylmura 92.6 0.32 6.9E-06 52.1 7.3 71 108-188 5-81 (498)
358 TIGR01318 gltD_gamma_fam gluta 92.5 0.56 1.2E-05 50.0 9.0 73 109-188 140-236 (467)
359 PLN03075 nicotianamine synthas 92.5 1.2 2.5E-05 45.4 10.8 100 109-214 123-237 (296)
360 PRK05597 molybdopterin biosynt 92.5 0.81 1.8E-05 47.3 9.9 88 105-199 23-139 (355)
361 COG0771 MurD UDP-N-acetylmuram 92.4 0.31 6.8E-06 52.1 6.9 70 107-185 4-76 (448)
362 PRK12809 putative oxidoreducta 92.4 0.56 1.2E-05 52.0 9.1 74 108-188 308-405 (639)
363 PRK12771 putative glutamate sy 92.4 0.39 8.5E-06 52.3 7.7 76 107-189 134-233 (564)
364 PRK09880 L-idonate 5-dehydroge 92.3 0.94 2E-05 45.5 10.0 92 109-211 169-265 (343)
365 cd01337 MDH_glyoxysomal_mitoch 92.3 0.31 6.8E-06 49.7 6.5 70 112-187 1-77 (310)
366 TIGR01757 Malate-DH_plant mala 92.3 0.64 1.4E-05 48.9 8.9 22 112-133 45-67 (387)
367 PLN02383 aspartate semialdehyd 92.1 0.44 9.5E-06 49.2 7.4 88 112-214 8-102 (344)
368 TIGR00978 asd_EA aspartate-sem 92.1 0.48 1E-05 48.6 7.6 94 112-214 1-106 (341)
369 PF04016 DUF364: Domain of unk 92.0 0.12 2.5E-06 47.1 2.8 86 106-209 7-92 (147)
370 KOG0022 Alcohol dehydrogenase, 91.9 0.29 6.3E-06 50.4 5.6 50 108-164 191-240 (375)
371 COG0078 ArgF Ornithine carbamo 91.9 0.55 1.2E-05 47.9 7.5 70 108-188 151-231 (310)
372 PRK14874 aspartate-semialdehyd 91.8 0.53 1.2E-05 48.1 7.5 87 112-213 2-95 (334)
373 TIGR02822 adh_fam_2 zinc-bindi 91.8 1 2.3E-05 45.2 9.5 88 109-211 165-253 (329)
374 PRK06598 aspartate-semialdehyd 91.6 2.3 5E-05 44.6 12.1 170 111-325 1-180 (369)
375 PRK10537 voltage-gated potassi 91.4 1 2.2E-05 47.5 9.2 91 112-211 241-336 (393)
376 PRK04284 ornithine carbamoyltr 91.3 0.59 1.3E-05 48.2 7.3 70 107-185 152-231 (332)
377 CHL00194 ycf39 Ycf39; Provisio 91.3 0.71 1.5E-05 46.0 7.8 69 112-187 1-73 (317)
378 TIGR02355 moeB molybdopterin s 91.3 0.71 1.5E-05 45.2 7.5 88 105-199 19-135 (240)
379 COG2227 UbiG 2-polyprenyl-3-me 91.3 1.4 3.1E-05 43.6 9.6 91 108-211 58-160 (243)
380 COG2910 Putative NADH-flavin r 91.3 0.73 1.6E-05 44.2 7.3 95 112-215 1-107 (211)
381 PRK14181 bifunctional 5,10-met 91.2 0.69 1.5E-05 46.9 7.4 78 107-211 150-228 (287)
382 PRK14804 ornithine carbamoyltr 91.1 0.83 1.8E-05 46.6 8.0 69 107-186 150-226 (311)
383 TIGR01771 L-LDH-NAD L-lactate 91.1 0.84 1.8E-05 46.1 8.0 66 116-187 1-73 (299)
384 PRK05600 thiamine biosynthesis 91.0 0.62 1.3E-05 48.6 7.2 88 105-199 36-152 (370)
385 PLN02586 probable cinnamyl alc 91.0 1.5 3.2E-05 44.8 9.8 91 109-209 183-275 (360)
386 PF10100 DUF2338: Uncharacteri 90.9 1.7 3.6E-05 46.1 10.1 172 111-298 1-207 (429)
387 PRK12562 ornithine carbamoyltr 90.8 0.81 1.8E-05 47.2 7.7 71 107-186 153-233 (334)
388 TIGR03026 NDP-sugDHase nucleot 90.8 1.2 2.7E-05 46.5 9.2 88 107-210 310-408 (411)
389 PRK08664 aspartate-semialdehyd 90.7 0.84 1.8E-05 46.9 7.8 92 112-213 4-108 (349)
390 COG0002 ArgC Acetylglutamate s 90.6 1.6 3.5E-05 45.3 9.6 95 111-213 2-102 (349)
391 PRK08040 putative semialdehyde 90.5 0.47 1E-05 49.0 5.6 88 112-214 5-99 (336)
392 PRK00779 ornithine carbamoyltr 90.4 1.6 3.4E-05 44.4 9.3 70 107-185 149-224 (304)
393 PRK12769 putative oxidoreducta 90.4 0.91 2E-05 50.4 8.3 72 109-187 326-421 (654)
394 PLN00141 Tic62-NAD(P)-related 90.4 0.74 1.6E-05 44.2 6.6 76 106-188 13-95 (251)
395 PRK04690 murD UDP-N-acetylmura 90.2 0.77 1.7E-05 49.0 7.2 68 108-185 6-76 (468)
396 PRK14168 bifunctional 5,10-met 90.2 0.87 1.9E-05 46.4 7.2 79 106-211 157-236 (297)
397 PRK00517 prmA ribosomal protei 90.0 1.4 3E-05 43.0 8.3 90 109-211 119-212 (250)
398 PRK14573 bifunctional D-alanyl 90.0 0.77 1.7E-05 52.3 7.3 65 112-185 5-70 (809)
399 PRK01713 ornithine carbamoyltr 89.9 0.89 1.9E-05 46.8 7.2 70 107-185 153-232 (334)
400 TIGR01532 E4PD_g-proteo D-eryt 89.8 1 2.3E-05 46.2 7.5 94 113-211 1-119 (325)
401 PRK06019 phosphoribosylaminoim 89.7 0.59 1.3E-05 48.2 5.7 65 111-184 2-69 (372)
402 COG0026 PurK Phosphoribosylami 89.7 0.5 1.1E-05 49.4 5.1 67 111-184 1-68 (375)
403 PRK04308 murD UDP-N-acetylmura 89.6 1.1 2.3E-05 47.2 7.6 69 108-185 3-74 (445)
404 TIGR01087 murD UDP-N-acetylmur 89.6 0.74 1.6E-05 48.1 6.4 64 113-185 1-69 (433)
405 KOG1495 Lactate dehydrogenase 89.6 2.8 6.1E-05 42.5 10.0 128 106-241 16-167 (332)
406 PRK06392 homoserine dehydrogen 89.6 0.82 1.8E-05 47.0 6.5 22 112-133 1-22 (326)
407 cd08237 ribitol-5-phosphate_DH 89.5 2.2 4.7E-05 43.1 9.5 88 109-210 163-254 (341)
408 COG0136 Asd Aspartate-semialde 89.4 4.4 9.6E-05 42.0 11.6 92 112-214 2-99 (334)
409 PRK02102 ornithine carbamoyltr 89.4 1.1 2.3E-05 46.3 7.3 71 107-186 152-232 (331)
410 PRK08223 hypothetical protein; 89.4 1.9 4.1E-05 43.7 8.9 28 105-133 22-49 (287)
411 PRK07878 molybdopterin biosynt 89.2 1.5 3.2E-05 46.0 8.2 28 105-133 37-64 (392)
412 PRK03515 ornithine carbamoyltr 89.1 1.4 3E-05 45.6 7.7 70 107-185 153-232 (336)
413 PLN02342 ornithine carbamoyltr 89.0 1.3 2.8E-05 46.0 7.6 69 107-186 191-267 (348)
414 TIGR03649 ergot_EASG ergot alk 89.0 1.5 3.3E-05 42.6 7.7 66 113-188 1-77 (285)
415 PRK06728 aspartate-semialdehyd 88.8 1.1 2.3E-05 46.7 6.7 89 112-214 6-101 (347)
416 PRK12409 D-amino acid dehydrog 88.6 0.59 1.3E-05 48.1 4.8 34 111-150 1-34 (410)
417 cd01486 Apg7 Apg7 is an E1-lik 88.5 1.2 2.6E-05 45.5 6.8 21 113-133 1-21 (307)
418 COG4569 MhpF Acetaldehyde dehy 88.4 1 2.2E-05 43.9 5.8 78 112-198 5-91 (310)
419 TIGR03693 ocin_ThiF_like putat 88.3 2.1 4.5E-05 47.6 8.9 78 109-193 128-219 (637)
420 cd01491 Ube1_repeat1 Ubiquitin 88.3 1.9 4.1E-05 43.6 8.0 35 106-147 15-50 (286)
421 PRK07806 short chain dehydroge 88.2 4.3 9.3E-05 38.2 10.0 36 108-150 4-40 (248)
422 PRK00856 pyrB aspartate carbam 88.2 2.1 4.5E-05 43.7 8.3 65 107-185 153-220 (305)
423 PRK01581 speE spermidine synth 88.1 3.1 6.6E-05 43.8 9.6 95 110-213 150-269 (374)
424 TIGR01296 asd_B aspartate-semi 88.1 0.95 2.1E-05 46.6 5.9 87 113-214 1-94 (339)
425 TIGR01082 murC UDP-N-acetylmur 88.1 1.2 2.6E-05 47.0 6.8 64 113-185 1-65 (448)
426 PRK03803 murD UDP-N-acetylmura 88.1 1.3 2.8E-05 46.6 7.0 66 112-185 7-75 (448)
427 TIGR02469 CbiT precorrin-6Y C5 88.1 5.6 0.00012 33.0 9.7 94 109-210 19-120 (124)
428 PRK02255 putrescine carbamoylt 88.0 3.3 7.1E-05 42.8 9.7 70 107-185 151-229 (338)
429 TIGR02819 fdhA_non_GSH formald 88.0 3.9 8.4E-05 42.5 10.4 95 109-210 185-297 (393)
430 PRK07200 aspartate/ornithine c 87.9 1.8 3.9E-05 45.8 7.8 71 107-186 184-270 (395)
431 PRK12814 putative NADPH-depend 87.8 2.2 4.7E-05 47.6 8.9 74 108-188 191-288 (652)
432 cd05188 MDR Medium chain reduc 87.8 6 0.00013 37.0 10.7 93 108-211 133-231 (271)
433 PLN02178 cinnamyl-alcohol dehy 87.8 3.7 8E-05 42.3 10.0 89 109-209 178-270 (375)
434 PRK07411 hypothetical protein; 87.7 3.4 7.5E-05 43.3 9.8 88 105-199 33-149 (390)
435 TIGR01317 GOGAT_sm_gam glutama 87.6 2.2 4.9E-05 45.7 8.6 74 107-187 140-237 (485)
436 PRK08192 aspartate carbamoyltr 87.6 1.9 4.1E-05 44.6 7.7 71 107-185 156-233 (338)
437 PRK14167 bifunctional 5,10-met 87.6 1.7 3.6E-05 44.3 7.2 78 107-211 154-232 (297)
438 TIGR03570 NeuD_NnaD sugar O-ac 87.6 2 4.4E-05 39.1 7.1 77 113-200 1-81 (201)
439 COG1004 Ugd Predicted UDP-gluc 87.5 1.6 3.5E-05 46.1 7.1 73 108-194 308-392 (414)
440 PRK12810 gltD glutamate syntha 87.5 1.9 4.1E-05 45.9 7.8 36 107-149 140-175 (471)
441 PRK13984 putative oxidoreducta 87.4 2 4.3E-05 47.1 8.1 72 109-187 282-377 (604)
442 PLN02477 glutamate dehydrogena 87.3 1.1 2.5E-05 47.4 6.0 32 106-144 202-233 (410)
443 PRK03806 murD UDP-N-acetylmura 87.2 1.8 3.8E-05 45.4 7.3 68 108-185 4-72 (438)
444 PLN02527 aspartate carbamoyltr 87.1 2 4.2E-05 43.8 7.4 71 107-185 148-225 (306)
445 PRK06463 fabG 3-ketoacyl-(acyl 87.1 5.2 0.00011 38.0 10.0 35 108-149 5-40 (255)
446 COG1062 AdhC Zn-dependent alco 86.9 4.5 9.7E-05 42.2 9.8 69 112-190 187-266 (366)
447 PRK10637 cysG siroheme synthas 86.9 3.3 7.1E-05 44.3 9.3 80 106-194 8-88 (457)
448 PRK11891 aspartate carbamoyltr 86.9 2 4.4E-05 45.9 7.6 72 107-186 238-316 (429)
449 KOG3007 Mu-crystallin [Amino a 86.7 1.2 2.5E-05 45.1 5.3 98 112-217 139-242 (333)
450 PRK06057 short chain dehydroge 86.6 5.6 0.00012 37.8 9.9 36 107-149 4-40 (255)
451 PRK12828 short chain dehydroge 86.6 6.5 0.00014 36.3 10.1 37 108-151 5-42 (239)
452 PRK05786 fabG 3-ketoacyl-(acyl 86.5 7 0.00015 36.4 10.3 37 108-151 3-40 (238)
453 TIGR03201 dearomat_had 6-hydro 86.4 3.7 8.1E-05 41.3 9.0 46 109-162 166-211 (349)
454 PLN02514 cinnamyl-alcohol dehy 86.4 5.1 0.00011 40.7 10.0 92 109-210 180-273 (357)
455 PLN02662 cinnamyl-alcohol dehy 86.3 2.6 5.5E-05 41.5 7.6 72 109-187 3-85 (322)
456 PRK09242 tropinone reductase; 86.3 2.9 6.2E-05 39.8 7.7 36 108-150 7-43 (257)
457 TIGR03451 mycoS_dep_FDH mycoth 86.2 6.2 0.00013 39.9 10.5 92 109-211 176-275 (358)
458 PRK06182 short chain dehydroge 86.2 5 0.00011 38.6 9.4 71 109-187 2-83 (273)
459 cd08239 THR_DH_like L-threonin 86.0 5.6 0.00012 39.5 9.9 90 109-209 163-259 (339)
460 PRK14031 glutamate dehydrogena 86.0 1.8 3.8E-05 46.5 6.6 36 106-148 224-259 (444)
461 TIGR03316 ygeW probable carbam 86.0 2.6 5.6E-05 44.0 7.7 71 107-186 167-253 (357)
462 PRK07231 fabG 3-ketoacyl-(acyl 85.9 3.1 6.6E-05 39.0 7.6 36 108-150 3-39 (251)
463 cd08255 2-desacetyl-2-hydroxye 85.8 5.9 0.00013 37.9 9.7 90 108-210 96-188 (277)
464 PRK07825 short chain dehydroge 85.8 4.2 9.1E-05 39.1 8.6 36 108-150 3-39 (273)
465 PRK07831 short chain dehydroge 85.7 4.2 9.2E-05 38.8 8.6 39 104-149 11-51 (262)
466 PLN03209 translocon at the inn 85.7 1.6 3.4E-05 48.3 6.2 40 106-152 76-116 (576)
467 PLN02214 cinnamoyl-CoA reducta 85.7 3.2 6.9E-05 42.0 8.1 76 106-188 6-91 (342)
468 TIGR00658 orni_carb_tr ornithi 85.6 2.4 5.3E-05 43.0 7.2 70 107-185 145-223 (304)
469 cd08281 liver_ADH_like1 Zinc-d 85.5 6.1 0.00013 40.2 10.1 90 109-209 191-287 (371)
470 PRK05717 oxidoreductase; Valid 85.3 4.6 0.0001 38.4 8.6 36 107-149 7-43 (255)
471 PRK09414 glutamate dehydrogena 85.3 2.3 5.1E-05 45.6 7.1 36 106-148 228-263 (445)
472 PRK10309 galactitol-1-phosphat 85.3 4.8 0.0001 40.3 9.1 91 109-209 160-257 (347)
473 PLN02661 Putative thiazole syn 85.2 1.4 3E-05 46.0 5.2 59 84-149 65-125 (357)
474 PRK07060 short chain dehydroge 85.2 3.5 7.6E-05 38.6 7.6 36 108-150 7-43 (245)
475 PRK02705 murD UDP-N-acetylmura 85.2 2.1 4.6E-05 45.0 6.8 67 113-185 2-75 (459)
476 PF12847 Methyltransf_18: Meth 85.0 2.7 5.8E-05 34.7 6.0 95 109-211 1-110 (112)
477 COG0334 GdhA Glutamate dehydro 85.0 2.2 4.9E-05 45.2 6.7 38 107-151 204-241 (411)
478 PRK08265 short chain dehydroge 84.9 5 0.00011 38.5 8.7 36 108-150 4-40 (261)
479 PF01494 FAD_binding_3: FAD bi 84.9 1.4 3E-05 43.1 4.9 32 113-150 3-34 (356)
480 cd08298 CAD2 Cinnamyl alcohol 84.6 5.2 0.00011 39.4 8.8 87 109-210 167-254 (329)
481 PLN02740 Alcohol dehydrogenase 84.5 5.9 0.00013 40.6 9.5 73 109-189 198-279 (381)
482 PRK09186 flagellin modificatio 84.5 4.3 9.3E-05 38.3 7.9 35 108-149 2-37 (256)
483 PRK06079 enoyl-(acyl carrier p 84.4 4.7 0.0001 38.6 8.3 35 108-149 5-42 (252)
484 PF02056 Glyco_hydro_4: Family 84.3 5.7 0.00012 37.7 8.5 79 113-193 1-88 (183)
485 TIGR00406 prmA ribosomal prote 84.1 4.3 9.3E-05 40.5 8.1 95 108-211 158-258 (288)
486 cd05313 NAD_bind_2_Glu_DH NAD( 83.9 1.6 3.5E-05 43.5 4.8 32 106-144 34-65 (254)
487 PRK05867 short chain dehydroge 83.9 3.6 7.9E-05 39.1 7.2 35 108-149 7-42 (253)
488 PRK07523 gluconate 5-dehydroge 83.8 4.2 9.1E-05 38.6 7.5 36 107-149 7-43 (255)
489 PRK13255 thiopurine S-methyltr 83.6 5 0.00011 38.7 8.0 96 109-214 37-158 (218)
490 PRK12779 putative bifunctional 83.6 2.9 6.3E-05 48.9 7.4 73 109-188 305-402 (944)
491 PRK08324 short chain dehydroge 83.5 3.6 7.8E-05 46.0 8.0 40 106-152 418-458 (681)
492 PF00070 Pyr_redox: Pyridine n 83.5 2.5 5.5E-05 33.6 5.0 32 113-150 1-32 (80)
493 PRK15182 Vi polysaccharide bio 83.5 6.8 0.00015 41.6 9.7 94 107-214 311-415 (425)
494 cd05283 CAD1 Cinnamyl alcohol 83.5 5.9 0.00013 39.5 8.8 90 109-209 169-260 (337)
495 PRK06197 short chain dehydroge 83.3 13 0.00029 36.6 11.1 46 97-150 4-50 (306)
496 PRK04523 N-acetylornithine car 83.2 4.3 9.3E-05 41.9 7.8 70 108-186 166-252 (335)
497 TIGR03855 NAD_NadX aspartate d 82.9 3.8 8.2E-05 40.1 6.9 62 145-213 7-70 (229)
498 cd08285 NADP_ADH NADP(H)-depen 82.9 6.7 0.00014 39.3 8.9 91 109-209 166-263 (351)
499 PLN02896 cinnamyl-alcohol dehy 82.8 13 0.00029 37.4 11.1 72 109-187 9-88 (353)
500 TIGR03840 TMPT_Se_Te thiopurin 82.8 7.1 0.00015 37.5 8.7 91 109-209 34-149 (213)
No 1
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.8e-77 Score=583.16 Aligned_cols=305 Identities=32% Similarity=0.514 Sum_probs=283.0
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCC
Q 013877 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|+++||. +.+++|++++||
T Consensus 10 da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~AD 76 (338)
T COG0059 10 DADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRAD 76 (338)
T ss_pred cCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCC
Confidence 3444 58999 9999999999999999999999 999999999999999999999999 589999999999
Q ss_pred EEEEeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 181 LVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 181 iViLavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
+|++++||..|.+||+ +|.|+|++|++|.|+|||++++. ++.||+|++|+||+||+||+.||++|++| +|+
T Consensus 77 vim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~Gv 148 (338)
T COG0059 77 VVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGV 148 (338)
T ss_pred EEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCc
Confidence 9999999999999999 79999999999999999999875 57999999999999999999999999997 899
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~ 337 (434)
|++|+||||+||+++++|++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++|++||+||++
T Consensus 149 P~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE 228 (338)
T COG0059 149 PALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFE 228 (338)
T ss_pred eeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc-cc--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCC
Q 013877 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-SY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 414 (434)
Q Consensus 338 ~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~-~~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~ 414 (434)
|+|+++ +|++||+|+||..|+++|| +|++||.|... ++ .-+++.|+++|++||||+|+++|+++++..+.+ |
T Consensus 229 ~lhE~k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~--l 303 (338)
T COG0059 229 CLHELK-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPK--L 303 (338)
T ss_pred HHHHHH-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHH--H
Confidence 999998 9999999999999999999 67789998443 22 236889999999999999999999999886333 4
Q ss_pred CCCcccccccccccccCC
Q 013877 415 PAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 415 ~~~~~~~~~~~~~w~~~~ 432 (434)
.+ .....++++||+++.
T Consensus 304 ~~-~r~~~~~~~iEkvg~ 320 (338)
T COG0059 304 EA-LREETAEHEIEKVGK 320 (338)
T ss_pred HH-HHHHhhcChHHHHHH
Confidence 43 567788999999863
No 2
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=9.4e-74 Score=589.89 Aligned_cols=323 Identities=28% Similarity=0.435 Sum_probs=298.8
Q ss_pred ccccccchhhhhhhh-----cccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 013877 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv 145 (434)
.|||||++|++|+++ |++++| |++.+..|+| |+|+|||||+||+++|+||+++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 777777 9888999999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 013877 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (434)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~ 220 (434)
++|++ ++++++|.++||. +.+++|++++||+|++++||..+..++++|+|+||+|++|.++|||++++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6789999999997 568999999999999999999988999999999999999999999999765
Q ss_pred cccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 013877 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (434)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~--qdvsg~a~e~a~~la~aiG~~~--~iettf~~ 296 (434)
++.||+|+|||||+||+||+.||++|++| +|+|++|||| ||++|+++++|++|+.++|++| +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 57999999999999999999999999997 8999999999 8999999999999999999997 89999999
Q ss_pred hcccccccchhhhhchH-----------------------------------------H---------------------
Q 013877 297 EYRSDIFGERGILLGAV-----------------------------------------H--------------------- 314 (434)
Q Consensus 297 E~~~Dlfge~tvL~G~~-----------------------------------------~--------------------- 314 (434)
|+++||||||++|||++ .
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~ 291 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQL 291 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHH
Confidence 99999999999999999 3
Q ss_pred ----------------------------------------------------------------------HHHHHH----
Q 013877 315 ----------------------------------------------------------------------GIVESL---- 320 (434)
Q Consensus 315 ----------------------------------------------------------------------aliea~---- 320 (434)
++++++
T Consensus 292 k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r~~~~~~~~E~~~~~~~~~~~~~~~erG~Lm~a~~~~g~e~~ 371 (487)
T PRK05225 292 KEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWREETGKTAFENAPQYEGKISEQEYFDKGVLMVAMVKAGVELA 371 (487)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHHHHhhcCchhhcccccccchhHHHHhhhhHHHHHHHhhhHHH
Confidence 566666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh-hhccchhHHHHHHHHHHhccCChhHH
Q 013877 321 FRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA-YSASYYPCMEILYECYEDVAAGSEIR 399 (434)
Q Consensus 321 ~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~-~~~~~~p~~~~m~e~~~~v~~G~f~r 399 (434)
||++|++||+||.||++++|+++ ||++||+|+|+.+|+++|| +|||||+| +..+.. ..|+++|++||+|+|+|
T Consensus 372 FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~g~~vi---~~mk~~l~~Iq~G~fak 445 (487)
T PRK05225 372 FETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFSHAAV---PLLKDFMATLQPGDLGK 445 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCcccChHHH---HHHHHHHHHcCCCHHHh
Confidence 99999999999999999999997 9999999999999999999 78899998 443434 59999999999999999
Q ss_pred HHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 400 SVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+| .+|+.. ++.|.+ ...++++.+||+||.
T Consensus 446 ~~-~e~~~g--~~~l~~-~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 446 GL-PSNAVD--NAQLRD-VNEAIRNHPIEQVGK 474 (487)
T ss_pred hH-HhccCC--cHHHHH-HHHHHhcCcHHHHHH
Confidence 99 887776 445665 789999999999974
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=3.6e-71 Score=553.10 Aligned_cols=302 Identities=29% Similarity=0.484 Sum_probs=277.9
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+.|+| ++|||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3578999 9999999999999999999999 9999998876 6678888888987 458999999999999
Q ss_pred EeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 013877 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (434)
Q Consensus 184 Lavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~al 262 (434)
+++|+..+.+++. +++++|++|++|+++|||+++|. .+.||+|+|||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988889986 69999999999999999999875 57999999999999999999999999997 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013877 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (434)
Q Consensus 263 iav~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e 340 (434)
|||+||+||++.++|++|+.+||++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhcc-c--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCC
Q 013877 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS-Y--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (434)
Q Consensus 341 ~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~-~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~ 417 (434)
+++ ||++||+|+|+.+|+++|| +|+|||+|.+.. . ..+|+.|+++|++||+|+|||+|+.+|+. .+..|.+
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~--g~~~~~~- 302 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQA--GRPTYNA- 302 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhC--CCHHHHH-
Confidence 997 9999999999999999999 788899986553 2 34899999999999999999999999874 4445554
Q ss_pred cccccccccccccCC
Q 013877 418 PMGKIDQTRIPINTS 432 (434)
Q Consensus 418 ~~~~~~~~~~w~~~~ 432 (434)
.+.++++..||+||.
T Consensus 303 ~~~~~~~h~ie~vg~ 317 (335)
T PRK13403 303 MKKAEQNHQLEKVGE 317 (335)
T ss_pred HHHHHhcCcHHHHHH
Confidence 678889999999873
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.7e-65 Score=515.95 Aligned_cols=302 Identities=30% Similarity=0.506 Sum_probs=279.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
...++| ++|+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467889 9999999999999999999999 9999989888788889999999873 589999999999999
Q ss_pred eecchHHHHHH-HHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 185 avpd~a~~~vl-~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
++||..+.+++ ++|.++|++|++|+++|||++++.+ +.||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998875 4889999999999999999999999997 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
++++|+|+++++++++|+.++|+++ +++|||++|+++||||||++|||++.++++++|+++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc-cc--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCc
Q 013877 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-SY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (434)
Q Consensus 342 l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~-~~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~ 418 (434)
++ ||++||+|+|+.+|+++|| +|+|||+|... .. ..+|+.|+++|++||+|+|+|+|+++|+. .+..|.+ .
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~--~~~~~~~-~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKA--GRPTFKA-L 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CcHHHHH-H
Confidence 97 8999999999999999999 78889998554 22 34899999999999999999999999874 4445665 7
Q ss_pred ccccccccccccCC
Q 013877 419 MGKIDQTRIPINTS 432 (434)
Q Consensus 419 ~~~~~~~~~w~~~~ 432 (434)
..++++.+||+||.
T Consensus 306 ~~~~~~~~~e~~g~ 319 (330)
T PRK05479 306 RREEAEHPIEKVGA 319 (330)
T ss_pred HHHHhcCcHHHHHH
Confidence 88899999999873
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=4.4e-61 Score=481.86 Aligned_cols=297 Identities=31% Similarity=0.475 Sum_probs=264.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+| |||+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+. +.++.|++++||+|++++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 998888888766777888888986 3568899999999999999
Q ss_pred chHHH-HHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+.+. .+.++|.+.++++.+|+++|||++++++. .||++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999998865 788899999999999999999999997 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~G 344 (434)
+|+++++++++++|+.++|.+| +++|+|++|+++|+|+++|+|||++|+++.+++|++|++||+||+||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999996 89999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcHHHHHHhcCCcchhhhhhhhhcc-c-hhHHHHHHHHHHhccCChhHHHHHHhcCc--cchhcCCCCCccc
Q 013877 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS-Y-YPCMEILYECYEDVAAGSEIRSVVLAGRR--FYEKEGLPAFPMG 420 (434)
Q Consensus 345 li~~li~e~G~~~m~~~vssp~~~eyg~~~~~~-~-~p~~~~m~e~~~~v~~G~f~r~~~~~~~~--~~~~~~~~~~~~~ 420 (434)
+++|++++|+..|+|+|| +|+|||+|.... + .-+|+.|+++|++||+|+|+|+|+.+++. +.+++ -..
T Consensus 221 -~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~~~~~-----~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKPAFNT-----ARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcHHHHH-----HHH
Confidence 999999999999999999 577899983332 2 23677999999999999999999987643 33332 244
Q ss_pred ccccccccccCC
Q 013877 421 KIDQTRIPINTS 432 (434)
Q Consensus 421 ~~~~~~~w~~~~ 432 (434)
++++.++|++|.
T Consensus 293 ~~~~~~~e~vg~ 304 (314)
T TIGR00465 293 YESEHEIEKVGK 304 (314)
T ss_pred HHhCCcHHHHHH
Confidence 578999999873
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=9.9e-42 Score=311.29 Aligned_cols=161 Identities=44% Similarity=0.715 Sum_probs=138.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|++ |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999998 5799999999999999999
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||+++||+|++||+||+.+|++|++| +|+|++++|+
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 79999999999999999999764 57999999999999999999999999997 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc
Q 013877 267 QDVDGRATNVALGWSVALGSPF 288 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~ 288 (434)
||.||++++++++|+++||++|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999863
No 7
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-34 Score=278.66 Aligned_cols=220 Identities=19% Similarity=0.270 Sum_probs=196.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++||+|||+|+||.+++.+|.++ | .+|++.+|..++..+.+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
+|+...+++.++.+ ..+++ +|++++|+.+..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999998 66676 467999999998877 667 899999999999998 589999 667
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..++++++.+.+.+|+..+|.. .+..+++|+..|+++|++|+ ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999976 44456689999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
+.| .++|+.++|. ..|+|+||||.-
T Consensus 205 ~~G-aakll~e~~~~p~~Lr~~VtSPGG 231 (266)
T COG0345 205 VAG-AAKLLLESGEHPAELRDQVTSPGG 231 (266)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCcCCCc
Confidence 999 9999999999 899999999963
No 8
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.6e-32 Score=270.20 Aligned_cols=220 Identities=18% Similarity=0.270 Sum_probs=188.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHH-HcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++++|.++ |+ +|++.+|+. ...+.+. +.|+.. +.+..|++++||+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~-~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNV-SNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCH-HHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 566665543 3344444 477653 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |.|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 56999999998876 5555668999999999988 589999 557
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
++.++.+..+.+..||..+|.. .+..++.|+..++++||+|+ +++++.+++++.|+++++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999965 22234478888999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
+.| .++|+.++|. ..++|+|+||.-
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCch
Confidence 999 8999999988 899999999964
No 9
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.97 E-value=1.9e-29 Score=248.29 Aligned_cols=221 Identities=14% Similarity=0.192 Sum_probs=183.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHH-HHHcC-ccccCCCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|++|+|||+|+||.+++++|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999988 7 5677666654332222 22232 221 3577888999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
|+||+...++++++.+++++++ +|++++|+.+..+++ .+|. ..|+|+|||+|..+ |.|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 567999999988876 4443 58999999999988 589998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~-Gl~~e~A~~~~ 338 (434)
+.+.+++.+.++.+..++..+|... +..+++|+..|+++||+|+ +++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5688899999999999999999752 2223477888999999999 789999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 339 VECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 339 ~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.|++.| .++|+.++|. ..++|+|++|.-
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~spgG 235 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATKGG 235 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCCCh
Confidence 999999 8999999886 999999999963
No 10
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=99.97 E-value=5e-32 Score=244.65 Aligned_cols=133 Identities=26% Similarity=0.411 Sum_probs=118.6
Q ss_pred hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh
Q 013877 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (434)
Q Consensus 294 f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~ 373 (434)
|++|+++||||||++|||+++++++++||++|++||+||.||++++|++. +|+++|+++|+.+|+++|| +|++||++
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 67999999999999999999999999999999999999999999999965 9999999999999999999 78889998
Q ss_pred -hhccc-hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 374 -YSASY-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 374 -~~~~~-~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+..++ .+++++|+++|++|++|+|+|+|+.+++..+.+ |.+ ++++|+++.||+||.
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~--l~~-~~~~~~~~~~e~VG~ 135 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPR--LNA-MREKIRNHPIEKVGE 135 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHH--HHH-HHHHHSTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHH--HHH-HHHhhcCCcchhHHH
Confidence 44333 468899999999999999999999998887766 664 899999999999973
No 11
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.96 E-value=2.7e-28 Score=237.99 Aligned_cols=214 Identities=18% Similarity=0.250 Sum_probs=178.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.+++++|.++ +. ++++.+++..+ .+... ..++.++++++|+||+|+|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 6899999999999999999987 52 35544443211 23332 4577788899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
|+...++++++.++++++.+|++++|+++..++. .++.+..++++|||+|... |.|+.. ++..+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999888777889999999877765 4455557999999999666 367777 56777
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+++.+..+.+..++..+|.. .+..++.|+..++++||+|+ +++++.+++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88889999999999999965 22234467888999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
| .++|+.++|. ..|+|+|++|.-
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCCh
Confidence 9 8999999986 899999999964
No 12
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=227.39 Aligned_cols=220 Identities=14% Similarity=0.180 Sum_probs=181.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++++|.++ | .+|++.+|..++. ...+...|+.. ..++.++++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 7 5777777654333 33344557654 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||+.+.++++++.+.++++++|+ +++|+++..+.+ ..+.+.+|++.|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999898888766 469999877765 4456678999999998877 367886 556
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..+++.+.++.+..++..+|....+ .| ++|+..+.++|++|+ +++++.+.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v-----~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVV-----EE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEe-----CH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7778899999999999999964111 22 257777889999997 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
+.| .++++.+++. ..+++.+++|.
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCCc
Confidence 998 7899987665 88999999886
No 13
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.2e-26 Score=221.96 Aligned_cols=221 Identities=15% Similarity=0.175 Sum_probs=178.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---E-EEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~-Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++.+|.++ |. + +++..|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 52 3 545555433 3334444456653 467888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
||+.+.++++++.+++++..+|++++|+.+..+++ .++.+..++++|||.+... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998886443567889999888766 5566678999999999866 4789985 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
.+.+.++.+.+..++..+|.... ..| +.+...+.++|+.|+ +++++.+.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999997621 123 245667889999998 889999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCCcch
Q 013877 343 TGIISKIISTQG-MLAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G-~~~m~~~vssp~~ 367 (434)
.| .++++.+++ ...++|+|++|.-
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCCh
Confidence 99 899998743 3899999999963
No 14
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.95 E-value=4e-27 Score=227.94 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=195.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHH-HHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|||||.|+|..++++++..+ |+ +++.+.. ..++... .+..|... +.+..+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 86 4444433 4455555 78888875 566789999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
+|..+.+++.++.+.+..+++| +.++|..+..+++ .++...+|||+|||+|..+ |+|..+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999998877778765 6999999987766 5566779999999999988 588886 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..+++.++.+++..++..+|.. +|..+++++..|.|+|++|+ ++|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 67888899999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch-hhhhh
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK-KEFEK 372 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~-~eyg~ 372 (434)
+.| .++|+.++|. ..|+|.||||.- ..||-
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPgG~TI~gl 238 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPGGTTIYGL 238 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCCcchHHHH
Confidence 999 9999999998 999999999964 23443
No 15
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.95 E-value=5.9e-26 Score=220.32 Aligned_cols=220 Identities=16% Similarity=0.213 Sum_probs=180.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.+++++|.++ |+ +|+++++++....+.+.+.|+.. ..+..|+++++|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5799999999999999999998 87 77777233344456666778764 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+...+++.++.+.++++++ |++++|+.+..+.. ..+.. +++++|||.|... |.+++. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999998988886 45779998766654 23333 7999999999877 356766 5557
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
...+.+..+.+..++..+|.. +.. .| +.|+..+.++|++|+ +++++.+.+++.|+++++|++...+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~~--~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGKI--WVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777889999999999999962 222 23 366777889999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.| +++|+.++|. ..|+++|++|.-
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCCch
Confidence 98 8999988887 899999999953
No 16
>PRK07680 late competence protein ComER; Validated
Probab=99.94 E-value=2.6e-25 Score=217.71 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|+||.+++.+|.++ |+ +|.+.+|+..+....+.+. |+.. ..+..++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5776666543333333333 5543 457888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||....++++++.++++++++| .+++|+.+..++. .++ ..++++|||+|... +.|++. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888765 5777888777755 333 36999999988654 257776 444
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~-~Gl~~e~A~~~~~e 340 (434)
....+.+..+.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+..+.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667778889999999999964 22334467777899999998 77999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 341 ~l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
++.| .++|+.+++. ..|+|+|++|.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7899998876 99999999996
No 17
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=3.8e-25 Score=214.81 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=179.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCchhHHHHHH-cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
|+||+|||+|+||.+++..|.++ | .+|.+.+|+.++ .+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~-~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEK-RAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHH-HHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 47899999999999999999988 7 567767665433 444443 47653 457788889999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
||..+.++++++.+++ +..+|+++.|+....++. .++.+.+++++|||.|... |.|++. +.+.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999887 444667999998776654 4455678999999998655 356776 5567
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
.+.+.++.+.+..|+..+|....+.+ | +.|+..++++|++|+ +++++.+.+++.|+++++|.+.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~~----e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVDD----E---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEECC----h---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999996422221 2 267788999999886 788999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.| .++++.+.|. ..++++|++|..
T Consensus 207 ~g-~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 207 LG-AAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCCcH
Confidence 99 8999998877 899999999853
No 18
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.92 E-value=1.3e-23 Score=203.66 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=167.2
Q ss_pred cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchhhhh
Q 013877 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (434)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~ 219 (434)
.+|+++.|+.++..+.+.+.|... ..++.++++++|+||||+||+.+.++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 368888876555455556668654 567888999999999999999999999999988776664 579999999888
Q ss_pred hcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcc
Q 013877 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (434)
Q Consensus 220 ~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~ 299 (434)
+. .++.+..++|+|||+|... |.|++. ++...+++.+..+.+..||..+|.. .+..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--------VELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--------EEEC
Confidence 66 5566678999999999888 478998 5668889999999999999999965 1222
Q ss_pred cccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 300 ~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
++.|+..++++|++|+ +++++.+++++.|+++++|.+++.|++.| .++|+.++|. ..++++|++|..
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCCcH
Confidence 4467788999999998 88999999999999999999999999999 8999998876 999999999964
No 19
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.91 E-value=2.9e-23 Score=201.49 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=163.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||||||+|+||.+++++|++. |+ .+.+.+|+.++..+.+... |... +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 75 3455555544433344434 3443 4678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||.|... +.|++.++ ..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~~-~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAIY-PP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEec-CC
Confidence 999999998763 567775 56889999887765 4455668999999998875 36787742 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli 346 (434)
.+.+..++..+|....+ .+|...|+|+..+...+..-.+++++.+.+++.|+|+++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~~----~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVEC----DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEE----CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 25789999999976322 24566667765543333333489999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCCcch
Q 013877 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 347 ~~l-i~e~G~--~~m~~~vssp~~ 367 (434)
++| +.+++. ..|+|+|+||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 899 577766 899999999964
No 20
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.83 E-value=2.4e-19 Score=182.91 Aligned_cols=277 Identities=15% Similarity=0.110 Sum_probs=185.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|++|++. |+++.++.+...+ ....+...|+. +....+.++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 9877666554332 22233334443 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~-~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
..++++++.+ .++++.+|+++++++....+......+....+|..|| ++|... ..+..+....+.|.++++++....
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999875322211113455678999999 656531 233333333446788889988888
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~l 349 (434)
+.++++.++.++..+|+. ++..+.. ..+..+.+.+.+|.++-..+ +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~------~HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAE------EHDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHH------HHhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 2222212 23466888899998665544 566688889999999998886 6666
Q ss_pred HHHhcHHHHHHhcCCcchhhhhhhhhccchhHHHHHHHHHHhccCCh--hHHHHHHhcCccchhcCCCC
Q 013877 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLAGRRFYEKEGLPA 416 (434)
Q Consensus 350 i~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~~m~e~~~~v~~G~--f~r~~~~~~~~~~~~~~~~~ 416 (434)
.. +.-....|.++++...-.. ...-..+.|.++.+.|++++ ..++++.+.+ .+|+.++.
T Consensus 221 a~-~~p~~w~di~~~N~~~~~~-----~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~--~~r~~~~~ 281 (359)
T PRK06545 221 AS-SDPGMWRDILESNAEALLD-----ALDEWIEDLDRARDALESGDAEAIAELFDAGK--AGRDRLPG 281 (359)
T ss_pred cC-CCHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCcc
Confidence 52 3334444444433221110 11223456667777777666 4556666554 34444554
No 21
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.76 E-value=6.8e-17 Score=160.41 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=151.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLavpd~ 189 (434)
++|+|||+|.||+++|+.|+.. |+.+ +++.+......+.+.+.|+.. ....+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9977 445555556677787788873 222333 67888999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh-HHHHHhhcccccCCCceEEEeecCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~-vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
+..++++++.|++++|++|++..++....++...-..|++++||..||. .|+. ...+ ..+-.+++++.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM-~G~~~~~~l--------f~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPM-FGPEADAGL--------FENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCC-CCCcccccc--------cCCCEEEEcCCCC
Confidence 9999999999999999999999988643332222255666699999994 4552 2223 4567888999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCC
Q 013877 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (434)
Q Consensus 269 vsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl 329 (434)
.+.+.++.+.+++.++|. +++.++.++|++.- +.+++..+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 888999999999999995 68888888887442 45677777788888877777666
No 22
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.71 E-value=2.4e-16 Score=155.28 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=133.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||+++|+.|++. |++|+++++. ....+.+.+.|.... ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 4799999999999999999999 9988766554 555677777776421 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 013877 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg 271 (434)
.++++++.++++++.+|++++++....++...-. ...+|..||.. |+. ...++.|......|.++++++..+.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999998875444321011 12589999943 221 112333333344578888988888889
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHH
Q 013877 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (434)
Q Consensus 272 ~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~ 320 (434)
++.+.+..++..+|.. ++..+..++ +....+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~~h------D~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPEEH------DRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHHHH------HHHHHHHcchHHHHHHH
Confidence 9999999999999964 433433333 34466677777755533
No 23
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.70 E-value=1.6e-15 Score=159.06 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=147.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+||| +|+||.++|+.|++. |++|++..+..+...+.+.+.|+.. ..+..++++++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9988877776544446677777753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..++++++.++++++++|+++.++. ...+.+ .+|.++.+|..||.. |+.. .. ..|-.+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~--------~~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PS--------LKGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-cc--------cCCCEEEEecCC
Confidence 9999999999999999998887643 334433 456678999999842 3221 11 234566677777
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
+.+.++.+.+.+++..+|.. ++.++..++++. + +..++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~~-v~~~~~e~HD~~--~---a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGAR-VIVTSPEEHDRI--M---SVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCCE-EEECCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 77888999999999999964 444544444322 1 233455555666777778888999988876554
No 24
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.70 E-value=1.4e-15 Score=149.27 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=131.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+||+|||+|+||.++|++|++. |+ +|++.++ +....+.+.+.|+... ..+..++. ++|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~-~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDH-NELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcC-CHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 5554444 4555667777887521 34666765 499999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCC------ChhhHHHHHhhcccccCCCceEEE
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
.+.+++.++.+ ++++++|+++........+. +.-.....+|..||+. |......+| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~--~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES--VPKHIRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH--HHHhcCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 99999888865544222211 0000125799999974 333322333 3567767
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+...+.+.++.+.+..++..+|. +++.++..+++ +.. ..++..+.+.-++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD------~~~a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHD------LHAAYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHH------HHHHHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 77777788899999999999996 45555444443 223 345555555555666654 4665555433
No 25
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.68 E-value=1.1e-15 Score=168.46 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=159.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+||+|||+|+||.++++.|++. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 84 66665554 44466677778751 12456788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChh--hHHHHHhhcccccCCCceEEEe
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP--SVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~--~vr~ly~~G~~~~G~Gv~alia 264 (434)
...++++++.++++++.+|+++++.+ +..+++ .++. .+++++|++|.. .. ..+.........|-++.++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~-~g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEK-SGVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCc-chhhhhhhHHhCCCeEEEE
Confidence 98999999999999999999999876 444433 2322 134555666632 21 0111000111234566678
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+....+.++.+.+..++..+|.. ++.. .+. .++..++++|++|+ +.-++.+.+.+.|.. ..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~~---~~~---~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLHM---DVA---HHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEEc---CHH---HHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888889999999999999964 2222 122 45577889999998 677777888777764 468888888888
Q ss_pred HHHHHHHHHhcHHHHHHhcCCc
Q 013877 344 GIISKIISTQGMLAVYNSFSGE 365 (434)
Q Consensus 344 Gli~~li~e~G~~~m~~~vssp 365 (434)
+ ++++. .+.-...+|.+++|
T Consensus 221 ~-~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 221 D-FTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred c-ccccc-cCCHHHHHHHHHHh
Confidence 6 66666 33445555665544
No 26
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.68 E-value=4e-15 Score=148.23 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=135.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++|+|||+|+||.++|+.|++. |+ +|+++++. ....+.+.+.|+.. ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 75 66655554 44567777777641 12356778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
...++++++.++++++.+|+++.+.+...++...-..+.++.++..||...... ..+..|...+..|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~--~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEH--SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcc--cchhhcCHHHHCCCeEEEeCCCCC
Confidence 999999999999999999988887764332221113456778999999542111 011112112224567778877777
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~ 321 (434)
+.++.+.+..++..+|.. ++..+.+ ..+..+.+++.+|.++-.++
T Consensus 156 ~~~~~~~~~~l~~~lG~~-~~~~~~~------~hD~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-VEEMDPE------HHDLVLAITSHLPHLIAYTI 200 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEcCHH------HHhHHHHHHhhHHHHHHHHH
Confidence 888999999999999974 3333222 23466888899998765554
No 27
>PLN02256 arogenate dehydrogenase
Probab=99.63 E-value=8.2e-15 Score=147.06 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|+.|++. |++|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999988 88887666553 245666778763 45777776 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~eI-~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..++++++ .++++++++|+++..++ +..+.. .++.+.++|++||+.+...-.. ...+.+.+++..
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~--------~~~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKG--------GWAGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcc--------ccCCCeEEEecc
Confidence 99999998 68899999988776643 444443 4566789999999875543111 123455544432
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 267 ----qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.+.+.++.+..+.++..+|+ +++..+.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 34567889999999999995 6788888888744
No 28
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.60 E-value=2.9e-14 Score=139.46 Aligned_cols=193 Identities=20% Similarity=0.202 Sum_probs=132.2
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCC
Q 013877 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (434)
Q Consensus 126 ~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk 203 (434)
+|+.|+++ | ++| ++.+.+....+.|++.|+... ..+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~v-~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEV-YGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEE-EEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEE-EEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57889988 7 454 577777778899989999742 22336789999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 013877 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (434)
Q Consensus 204 ~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~a 283 (434)
+|++|+++.++.....+...-.+|.+++||.+|| +.|+. +..|.........|.++++++..+.+.++++.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999864322211124567899999999 44553 234444445566789999999988888999999999999
Q ss_pred hCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 284 iG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+|+ +++..+.++|++.- +.+++..+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 997 67778888887542 334555555666666656544444443333
No 29
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.60 E-value=2e-13 Score=139.20 Aligned_cols=251 Identities=13% Similarity=0.126 Sum_probs=156.2
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCch----hHHHHHHcCccccCC
Q 013877 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (434)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~ 167 (434)
+||.|-|.||| |.++|.+|.+. |++|++++++..+ ..+.+.+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777777776 88999999999 9999888775431 344566678764
Q ss_pred CcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccchhh----hhhcccccCCCCccEEEeccCCChh
Q 013877 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG----HLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~i~----~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
..+..++++++|+||+++|+.. ..+++.++.+++++|++|++++..... .+.+ .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5678899999999999999988 578999999999999988877665432 1222 222222334454544444
Q ss_pred hHHHHHhhcccccCCCceEEE----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH---
Q 013877 243 SVRRLYVQGKEINGAGINSSF----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--- 315 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~ali----av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--- 315 (434)
.. |.+ +.|...+. +.....+.++.+.+..++.++|.. ++... + +.......+...+.+
T Consensus 148 v~------Gae--~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~~ 212 (342)
T PRK12557 148 VP------GTP--QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVAL 212 (342)
T ss_pred cc------ccc--cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHHH
Confidence 31 100 01222211 123344778999999999999963 22221 1 122221122222222
Q ss_pred -HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCc------chhhhhhhhhccchh-HHHHHH
Q 013877 316 -IVESLFRRFTENGMNEDL-AYKNTVECITGIISKIISTQGMLAVYNSFSGE------DKKEFEKAYSASYYP-CMEILY 386 (434)
Q Consensus 316 -liea~~~~~v~~Gl~~e~-A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp------~~~eyg~~~~~~~~p-~~~~m~ 386 (434)
.+--.+..+.+.|..|.. +.+.+.|++.| +++|+.++|++.|.+.+... +...|+..- ..-| ..++++
T Consensus 213 a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 289 (342)
T PRK12557 213 SGVLDYYSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNPELLLRSASSMHLLEKQ--KDLDAALEILE 289 (342)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhh--hhHHHHHHHHH
Confidence 222244555666666554 55589999998 99999999999998877521 111233310 1122 457888
Q ss_pred HHHHhcc
Q 013877 387 ECYEDVA 393 (434)
Q Consensus 387 e~~~~v~ 393 (434)
++++++.
T Consensus 290 ~~~~~~~ 296 (342)
T PRK12557 290 NLDEDLL 296 (342)
T ss_pred HHHHHHh
Confidence 8888863
No 30
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.57 E-value=1.7e-13 Score=141.11 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=114.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+ |+||+++|+.|++. .+++|+ +.+.. +.+ ..+.++++++||+||+|+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~--------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA--------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC--------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 167765 55431 111 3467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~eI~~~---Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..++++++.++ +++|++|+++.+++-.-++. ..+.+.+||..|| +.|+....+ .+|.++++++..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999999875 89999999999987433322 1233567999999 444432112 357888887653
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
..+..+.++.|+..+|+ +++.++.++|++.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 33557889999999996 6778888888744
No 31
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=1.8e-13 Score=136.23 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=140.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----cCccccC----------CCcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~Ea 175 (434)
+++|+|||+|+||.++|..|..+ |++|++.++.. +..+.+.+ .|..... ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999998 99887766543 33333332 1211000 013467788
Q ss_pred hccCCEEEEeecchH--HHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcc
Q 013877 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 176 ~~~ADiViLavpd~a--~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
+++||+||+++|+.. ..+++.++.+.++++++| +.++|..+..+.+ .++...+|+++||+.|....
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~~-------- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADVI-------- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCccC--------
Confidence 999999999999876 457888898888888776 5778888766655 34445579999999998651
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHH
Q 013877 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (434)
Q Consensus 253 ~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e 332 (434)
. ... +......+.+..+.+..++..+|...++ .+.+..-| ++...+.+++.-++..+.+.|++++
T Consensus 146 ----~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~-----~~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 146 ----P-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVL-----VKKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ----c-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEE-----EcCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 2 223 4456677889999999999999974211 11111111 1222233444445555667778998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHH
Q 013877 333 LAYKNTVECI------TGIISKIISTQGMLAVY 359 (434)
Q Consensus 333 ~A~~~~~e~l------~Gli~~li~e~G~~~m~ 359 (434)
+.....-+.. .| .-+++-..|+..++
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~ 242 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHL 242 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHH
Confidence 8877543321 24 34555566664433
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.56 E-value=1.5e-14 Score=144.02 Aligned_cols=193 Identities=21% Similarity=0.208 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.+||+||.+. |+.|.+++|..++..+.+++.|... ..++.|+++++|+||+++||..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 192 ~-~vl~---eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
. +|+. .+.+.+++|+++++++-+....-.+. ...-..+..++ =+|-.-+.. ..+ .|.-. |-+.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLt-imvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLT-IMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceE-EEeC
Confidence 6 6774 59999999999999876643211000 00001233443 234221111 112 23444 3334
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-----hhhch-HHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-----ILLGA-VHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-----vL~G~-~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
. +.++.+.++-++..+|.. ++.. =+. =.|..+ +++++ ..++.| .+..+.++|++++..+.
T Consensus 139 G--~~~~f~r~~pvl~~~g~~-i~~~---G~~---G~G~~~Kl~nn~l~~~~~~a~aE-Al~la~k~Gld~~~~~~ 204 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN-IVHV---GPV---GAGQAAKLANNILLAGNIAALAE-ALALAEKAGLDPDVVLE 204 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc-eEEE---CCC---CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH
Confidence 4 578999999999999963 1100 000 011111 12222 222333 33456799999997776
No 33
>PLN02712 arogenate dehydrogenase
Probab=99.56 E-value=1.3e-13 Score=151.50 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=130.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLa 185 (434)
.+++ +||||||+|+||.++|++|++. |++|+++++.. . .+.+.+.|+.. ..+.+++++ .+|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 3466 8999999999999999999998 88887766653 2 25566778753 467788775 58999999
Q ss_pred ecchHHHHHHHHHHh-cCCCCcEEEEeccc---hhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGF---LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 186 vpd~a~~~vl~eI~~-~Lk~g~iL~~s~G~---~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+|+....++++++.+ .+++|++|+++... .+..+.. .+|.++++|+.||+.....-+..|.. ......|+.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~- 507 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR- 507 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE-
Confidence 999999999998876 68999999988655 3444443 55678899999997765431111111 111111211
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCC
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~ 330 (434)
+ .......+..+..+.++..+|+ ++++++.+++++. .+.+-.+|. .+...+++.|++
T Consensus 508 -v-~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 -I-GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred -e-CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHH---HHHHHHHHCCCc
Confidence 1 1112223556666799999995 6788888888732 222223333 334677777875
No 34
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.55 E-value=8.8e-13 Score=132.79 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=160.6
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHHHHHcCccccCC
Q 013877 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (434)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~ 167 (434)
+||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 46777777776 88999999999 999998887533 2345677788875
Q ss_pred CcCCHHhhhccCCEEEEeecchHHH-HHHHHHHhcCCCCcEEEEeccchh---hh-hhccccc-CCCCccEEEeccC-CC
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GH-LQSMGLD-FPKNIGVIAVCPK-GM 240 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i---~~-~~~~~i~-~~~di~VI~v~Pn-~p 240 (434)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-... .+ ++. .+. -++|+.|...||- -|
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP 149 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVP 149 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCC
Confidence 668999999999999999998875 788889999999999998876542 22 222 122 2589999999993 34
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----H
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----l 316 (434)
++.-.+.|.-+ |... + -..-++.++.+...+|++.+|.. ++. ...|+.+..+-.|-.+.+ -
T Consensus 150 ~~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~-~~~------~pa~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 150 GTPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKK-AYV------VPADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCC-eee------cchhhcchhhhHHHHHHHHHHHH
Confidence 44433334433 2221 1 24457889999999999999975 111 122355555444444444 2
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 317 VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 317 iea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+-.-++.++ -.|-|.+++-+.+.+++.. ++.++.++|+..|.+.+.
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcC
Confidence 333455554 4599999999999999985 999999999999988775
No 35
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.53 E-value=5.2e-13 Score=137.46 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=125.4
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 110 g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
.+++|+||| +|.||+++|+.|++. |++|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 348999999 999999999999999 99987776531 12456788899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
....++++++.+ +++|++|+++..++. ..+.. ..+. .||..||...... .+ ..|-..++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEEE--
Confidence 999999999999 999999999987642 23322 2222 6999999544322 11 12333323
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
....+.++.+.+..++..+|+ +++..+..+|+..- +.+++..+.+.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vshLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334455788999999999996 57777777776432 234444333445555666667888776544
No 36
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.48 E-value=5.9e-13 Score=131.04 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=115.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----------HHHHHcCcccc--------C-CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----------~~A~~~G~~~~--------~-~~~~~ 171 (434)
|+||+|||+|.||.++|..|..+ |++|++.+++.++.. +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 47899999999999999999999 998877665433221 13333442100 0 00234
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
.+ .+++||+||+++|++.. .++++++.++++++++| +.++|+.+..+.+ .++..-+++++||+.|.+..
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 44 57999999999998766 58999999999999988 6888988876655 33334579999999998883
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++. ++.+...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 5668888999999999999999975
No 37
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.45 E-value=2.7e-13 Score=112.04 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCCchhHHHHHHcCccccCCCcC-CHHhhhccCCEEEEeec
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~-~~~Ea~~~ADiViLavp 187 (434)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+||+++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666666667777877653 34 79999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-Eecc
Q 013877 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~-~s~G 213 (434)
|+...++++++ +.+.++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777788664 5554
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.45 E-value=3.5e-12 Score=135.73 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=131.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH------------------HcC-ccccCCCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~~~~~~~ 171 (434)
++||+|||+|+||.++|.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999888876443221110 012 222 457
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+++++++||+|+.++|+... ..++.++.+.++++.+| +-++|+.+..+.+ .+...-.++..||+.|.+..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~---- 146 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL---- 146 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC----
Confidence 88999999999999998874 35778888888888765 4567877766654 33334478999999987651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHc
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTEN 327 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~ 327 (434)
. .. .++.....+.+..+.+..++..+|...+. .+...+ ..+++.+.. ++.-++..+.+.
T Consensus 147 --------~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~-----gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 147 --------P-LV-ELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEID-----AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred --------c-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCc-----chhHHHHHHHHHHHHHHHHHcC
Confidence 1 22 35556667889999999999999975211 111111 223333333 334455556678
Q ss_pred CCCHHHHHHHHH
Q 013877 328 GMNEDLAYKNTV 339 (434)
Q Consensus 328 Gl~~e~A~~~~~ 339 (434)
|+++++.....-
T Consensus 207 ~~s~~~id~~~~ 218 (495)
T PRK07531 207 IATTEEIDDVIR 218 (495)
T ss_pred CCCHHHHHHHHh
Confidence 899998877443
No 39
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.44 E-value=5.4e-13 Score=121.62 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=100.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||||||+|+||.+||+||.++ |++|.+++|..+ ..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999988877644 456666678876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 191 ~-~~vl~e--I~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
+ .+++.+ +.+.+++|+++++.+-.... .+.+ ..-+.++.+|- +|-.-++. .-+.| -.+.++
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~~g------~l~~~~- 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAEEG------TLTIMV- 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHHHT------TEEEEE-
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccccc------ceEEEc-
Confidence 5 589988 99999999999988766532 2222 11134666663 33221221 12222 124433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 013877 265 VHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~ 286 (434)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 32 45788999999999985
No 40
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=2.8e-12 Score=141.02 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=118.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|++|++. |++|+++.+.. ..+.+.+.|+.. ..+.++++ +++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 98887666652 235677788764 55777755 56999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee-
Q 013877 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (434)
Q Consensus 191 ~~~vl~eI~-~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav- 265 (434)
..++++++. +++++|++|+++..+... .+.. .+|.+.+||..||.. |+.. ...| -.|.+.++..
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999998876532 2222 456788999999955 4431 1112 1334444431
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 266 ---~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
......+..+..+.++..+|+ ++++++.+++++.
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~ 226 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKY 226 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH
Confidence 112222456677899999996 6777877777643
No 41
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.41 E-value=6.9e-12 Score=119.54 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=109.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 999999999999999 99998887765443333321 13210 001246678899999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-----------------hhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-----------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
+++|++.+.++++++.+.++. ++| ..+.|+.. ..+++ .+|.+.+||+++||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999988887764 655 46677764 22333 455546899999999988754
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~ai-G~~ 287 (434)
. . ..+.+...+++ .. +.++++.+.+|...+ |..
T Consensus 150 ~-~-----~~~~~~~~~v~-Gd--d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 D-V-----DDEVDCDVLVC-GD--DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred C-C-----CCCCCCCEEEE-CC--CHHHHHHHHHHHHhcCCCC
Confidence 3 1 11234555444 22 356999999999999 864
No 42
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.40 E-value=5.8e-12 Score=124.79 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=111.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCcccc-------C-CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------~-~~~~~ 171 (434)
++||+|||+|.||.++|++|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9998877665332 221 222231100 0 01233
Q ss_pred HHhhhccCCEEEEeec--chHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavp--d~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
..+++++||+||.|+| ++....++.++.+.++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 444457888999999999887 4889998876655 33334689999998887651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
. .. .++.+...+.+..+.+..++..+|..
T Consensus 150 --------~-lv-eiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-LV-EIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-eE-EEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 22 35567778889999999999999975
No 43
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.40 E-value=8.1e-12 Score=123.99 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc----------CCCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~Ea~~~AD 180 (434)
|+||+|||+|+||.++|.+|.++ |++|.+++|... ..+...+.|.... .....+.+++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 57999999999999999999999 999887777533 3343444321100 001356778889999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE-eccchhh-------hhhcccccCCC-CccEEEeccCCChhhHHHHHhhc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~-s~G~~i~-------~~~~~~i~~~~-di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
+||+++|+....++++++.+.++++++|+. +.|+... .+.+ ..+. ....++..|+.+....
T Consensus 74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~~------- 143 (325)
T PRK00094 74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEVA------- 143 (325)
T ss_pred EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHHH-------
Confidence 999999998888999999999999987664 4487542 2222 2222 1245666786654431
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.|.+.++.... .+.+..+.+..++...|.
T Consensus 144 -----~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 144 -----RGLPTAVVIAS-TDEELAERVQELFHSPYF 172 (325)
T ss_pred -----cCCCcEEEEEe-CCHHHHHHHHHHhCCCCE
Confidence 23333222222 246778888888888775
No 44
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.38 E-value=1.1e-12 Score=137.19 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhccchhHHH----HHHHHHHhcc
Q 013877 318 ESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME----ILYECYEDVA 393 (434)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~----~m~e~~~~v~ 393 (434)
+++||.+|++|++|++||+++++++. +|+++|+++||.+|||++|+|+ +||.|.. ...+|+ +++++|++|+
T Consensus 233 ~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~ta--k~ga~~~--~~~~k~~m~p~f~~~~~~I~ 307 (487)
T PRK05225 233 LLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSNPA--KIRAFEL--SEQLKEIMAPLFQKHMDDII 307 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccchh--hcccccc--cHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999998 6999999999999999999655 5998632 233444 4499999999
Q ss_pred CChhHHHHHHhcCccc
Q 013877 394 AGSEIRSVVLAGRRFY 409 (434)
Q Consensus 394 ~G~f~r~~~~~~~~~~ 409 (434)
||+|+|+|+.++...+
T Consensus 308 sG~fak~~m~d~~~~~ 323 (487)
T PRK05225 308 SGEFSSTMMADWANDD 323 (487)
T ss_pred ccHHHHHHHHHHhcCC
Confidence 9999999999887743
No 45
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=3e-11 Score=120.35 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc---CCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~---ADiViLavpd 188 (434)
++|||||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999999 999888777644 345556677664 5688888876 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. ...++++++.+.+++|++|++.+.... ..+.+ . .-..++.++ =+|-.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667889899999999999998866532 12211 1 112456654 345332221 111 355 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~--~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~G--l~~e~A~~~~~ 339 (434)
+.. +.++.+.+..++..+|.. .++..- .-.-....+. -+.++.+...++.| ++..+.+.| ++++..+..--
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aE-a~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAE-GLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcccCCCHHHHHHHHc
Confidence 444 467889999999999962 111110 0000000000 01112222223333 345667888 99998877433
No 46
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.36 E-value=2.7e-11 Score=120.75 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=124.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.+||++|.++ |++|.++++.. + .+...+.|... +.+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99988877653 2 34455667764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 192 -~~vl~---eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.++- +|-.-+.. ..+.| -..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GAREG-------TLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEEE
Confidence 46763 367778999999998877543 1211 11234677776 68444333 23333 333232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.. +.+..+.+..++..+|... +..- .-.-....+. -+.++.....++.|+ +..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~-~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea-~~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNI-TLVGGNGDGQTCKVA-NQIIVALNIEAVSEA-LLFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCc-EEeCCccHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 33 4678999999999999641 1110 0000011111 111122223335554 3456889999998885
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.34 E-value=6.5e-11 Score=118.04 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=103.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh---hccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea---~~~ADiViLavpd 188 (434)
+||||||+|+||.++|++|.++ |++|.+++|+.+ ..+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 4899999999999999999999 999988776644 455556667653 3455554 4568999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
....++++++.+.+++|++|++.+... .....+ ..-..+++++-....+..... + .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a----~-------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR----E-------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-e-eee
Confidence 977899999999999999988775542 111111 122356777765443322221 1 354 3 334
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 013877 266 HQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~ 286 (434)
.. +.++.+.+..++..+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 57889999999999986
No 48
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.34 E-value=2.9e-11 Score=120.46 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=124.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||+|||+|+||.++|.+|.+. |++|.+++++.++ .+...+.|... +.+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999999 9998887776443 55555667653 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~-~~vl~---eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ .+++. .+.+.+++|+++++.+-+... .+.+ .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56664 477889999998877655432 2211 0112456665 355433322 112 2344433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
+.. +.+..+.+..++..+|.. ++... .-.-....+. .-.+++....++--.+..+.+.|++++..+...-
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 233 567899999999999964 21110 0000001110 0112233333333345667899999998776433
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=2e-10 Score=113.72 Aligned_cols=216 Identities=17% Similarity=0.194 Sum_probs=134.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc------------CccccC---------CCc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~ 169 (434)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .....+ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999998 999887776533 23333211 111000 014
Q ss_pred CCHHhhhccCCEEEEeecch--HHHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 170 GDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~--a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
.+.++++++||+||.|+|.. ...++++++.+.++++++|+ .++++.+..+.+ ..+..-+++..||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 57888999999999999966 34578999999999998874 555665544443 2223347999999777543
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFT 325 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v 325 (434)
.-..-+.++...+.+.++.+.+++..+|...++-. .+ ..+-+.+-+.. ++..++ .++
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea~-~l~ 207 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAAL-ALW 207 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHHH-HHH
Confidence 12233556777888999999999999996421110 01 11222232332 332222 357
Q ss_pred HcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhc
Q 013877 326 ENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSF 362 (434)
Q Consensus 326 ~~Gl-~~e~A~~~---~~e~l~Gli~~li~e~G~~~m~~~v 362 (434)
+.|+ ++++--.. ....-.| .-+++-..|++.+++..
T Consensus 208 ~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 208 AKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNIT 247 (287)
T ss_pred HcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHH
Confidence 7785 56554332 2221235 34567777776555444
No 50
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.30 E-value=1.1e-10 Score=115.47 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=121.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHH
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~ 192 (434)
||||||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99998777654 4456666677654 567889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 193 -~vl---~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
.++ +.+.+.+++|++|++.+..... .+.+ .....++.++- +|-. +... ... .|...++ +
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~-~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIM-V 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEE-e
Confidence 455 3477888999999887665432 2221 01124667775 5732 2211 111 2343423 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHH-H---HHHHHHHHHHcCCCHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-I---VESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~a-l---iea~~~~~v~~Gl~~e~A~~~~ 338 (434)
.. +.+..+.+..++..+|.. ++.. -.... ++..-+ .+.+.+ . +--++..+.+.|+++++.+...
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~---g~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l 204 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLV---GGNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQAL 204 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEe---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 468889999999999964 2111 00000 111112 222222 2 2234556679999999888633
No 51
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.28 E-value=8.7e-11 Score=116.31 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=111.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--------------cCccccC---------C
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~~---------~ 167 (434)
++||+|||+|.||.++|..|.++ |++|++.+++.+ ..+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEE-ILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 999887766533 3332211 1211000 0
Q ss_pred CcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhH
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
...+. +++++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 678999999999998874 578889999999998764 667887766654 33344579999999998873
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 245 r~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++.. + .+...+.+..+.+..++..+|..
T Consensus 152 ------------~~vEv-~-~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIEV-V-RAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEEE-e-CCCCCCHHHHHHHHHHHHHcCCe
Confidence 24442 3 67788899999999999999964
No 52
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.28 E-value=2.7e-10 Score=112.67 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=108.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (434)
++||+|||+|.||.++|.+|.++ |++|+++++..+ ..+.+.+ .|..... ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47999999999999999999999 999987776533 3333221 1110000 0135
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+.++++++||+||.|+|+.... .++.++.+.++++++| +.++.+.+..+.+ .......++.+|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 6778999999999999988754 6778898999999877 5677777665544 2222345788888755433
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 123335556677889999999999999964
No 53
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.28 E-value=1.1e-10 Score=124.47 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=105.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhcc---CCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~---ADiViL 184 (434)
+.+|||||+|+||.+||+||.++ |++|.|++|..++..+.... .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999876654443321 14320 0014678888876 999999
Q ss_pred eecchHHH-HHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
++|+.... +|++.+.+.|++|++|++..-.... ...+ ..-.+++.++ -+|-.-+..- =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYL-GMGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-eCCCcCCHHH---hc-------CCC-
Confidence 99988775 6888899999999999988654321 1111 1123567766 5663323221 11 454
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +-+.. +.++.+.++-++..+|..
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 567999999999999963
No 54
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.27 E-value=3.5e-11 Score=120.92 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=94.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--------CccccC--CCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~~~~~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|.+|.++ |++|.++.|...+ .+...+. |..... ....+.+|+++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999888875333 2333332 311000 014578888999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEE-EEeccch-----hhhhhcccc--cCCCCccEEEeccCCChhhHHHHHhhccc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~-----i~~~~~~~i--~~~~di~VI~v~Pn~pg~~vr~ly~~G~~ 253 (434)
||+++|+....+++ +.++++.+| ..+.|+. ...+.+ .+ ....++ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 99999999776666 445677655 4667764 222221 00 011222 456788776554
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 254 ~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.|.+.+.... ..+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~~-~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVVA-SPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEEE-eCCHHHHHHHHHHhCCCcEE
Confidence 23444322222 23567788888888888753
No 55
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.27 E-value=4.4e-11 Score=119.19 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=123.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc---CCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~---ADiViLavpd 188 (434)
+||||||+|+||.++|++|.+. |++|.++++..+ ..+.+.+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 999988777644 345556678764 5678888875 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. ...++++.+.+.+++|+++++.+.... ..+.+ ..-..++.++- +|..-+..- =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 556888889999999998887654332 11211 11235677775 775444321 11 354 323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC---cccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHH--cCCCHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSP---FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYKN 337 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~---~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~--~Gl~~e~A~~~ 337 (434)
+.. +.+..+.+..++..+|.. .++..- .-.-....+. .+.++.+.+.++.| ++..+.+ .|++++..+..
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aE-a~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAE-GFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHH
Confidence 343 567889999999999962 111110 0000000011 12222333333333 4455666 89999987763
No 56
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.26 E-value=1.9e-10 Score=113.91 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=121.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH-HHH
Q 013877 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (434)
Q Consensus 116 IIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~-~~v 194 (434)
|||+|+||.++|++|.++ |++|++++|+.+ ..+...+.|... ..+..++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999988877644 455666677754 56888999999999999998554 678
Q ss_pred H---HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 195 l---~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
+ +++.+.+++|++|++.+++.....+.. ......+++++- +|-.-+.. ..+.| -..+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~~---~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGVG---GARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCHH---HHhhC-------cEEEEE-CC--C
Confidence 7 578889999999998888764322110 011124677765 36333222 33443 333232 33 3
Q ss_pred HHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 271 GRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.+..+.+..++..+|... +..- ...-....+. .+..+.+...++.| ++..+.+.|++++..+.
T Consensus 136 ~~~~~~~~~~l~~~g~~~-~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNI-VHCGDHGAGQAAKIC-NNMLLGISMIGTAE-AMALGEKLGLDPKVLFE 199 (288)
T ss_pred HHHHHHHHHHHHHhcCCe-EeeCCCCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH
Confidence 477888999999999641 1110 0000001011 11111111222333 34567899999998775
No 57
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.25 E-value=6.4e-10 Score=113.07 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=136.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC---------ccccC--CCcCCHHhhhccC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~Ea~~~A 179 (434)
++||+|||.|+||.++|..|.++ | +++++.+. +...+...+.+ +.... ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 8 45555554 33333333332 11000 0134677889999
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCc-EEEEeccchh-------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
|+||+++|.....+++++|.+++++++ +|++..|+.. +.+.+ .+|....++...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998886 5578889864 24433 3343334567888776655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH---HHHHHHHHHHHcC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a---liea~~~~~v~~G 328 (434)
+.|.++.+.+..+ +.+ .+..+...+... .|.-....|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~---~~~~v~~lf~~~-----~~~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQH---LATRLSPLFRTR-----RFRVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHH---HHHHHHHHhCCC-----CEEEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 2466653433332 333 344445555443 23345556676655 6666653 2222333 44555
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHH--------HHhcHHHHHHhcCCcc--hhhhhhhhh
Q 013877 329 MNEDLA-YKNTVECITGIISKII--------STQGMLAVYNSFSGED--KKEFEKAYS 375 (434)
Q Consensus 329 l~~e~A-~~~~~e~l~Gli~~li--------~e~G~~~m~~~vssp~--~~eyg~~~~ 375 (434)
-...-| ...+++|+.. +++.+ .-.|++.|.--|+++. ...||..+.
T Consensus 212 ~n~~aali~~~~~E~~~-~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~ 268 (341)
T PRK12439 212 ENTRAMVIARALREMTK-LGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLG 268 (341)
T ss_pred chHHHHHHHHHHHHHHH-HHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHH
Confidence 444322 3345566553 34333 1234567777777652 234666544
No 58
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.25 E-value=1.4e-11 Score=109.46 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=72.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||+|||.|+.|.++++.|.+. |++|.-.+.++..+.+++.. +.. +....+..|+++++|+|||+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~--~~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAA--FIG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCccccccccc--ccc-cccccccccccccCCEEEEEechHHH
Confidence 6999999999999999999999 99864433333334444433 221 22256778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-hhhhhcccccCCCCccEEEecc
Q 013877 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 192 ~~vl~eI~~~--Lk~g~iL~~s~G~~-i~~~~~~~i~~~~di~VI~v~P 237 (434)
.++.++|... .++|++|++++|-. ...++- .-..+.-+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999854 222211 0023556666776
No 59
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.23 E-value=6.3e-10 Score=111.26 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=124.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999988777533 2232 2234532100 1245
Q ss_pred CHHhhhccCCEEEEeecchH--HHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a--~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+..++++++|+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777877766665543 334444444544 33444579999997765441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-HHHHHHHHHHHH
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTE 326 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-aliea~~~~~v~ 326 (434)
... .++.+...+.+.++.+..++..+|... +.. ..... +.+++-+. +++.-++..+.+
T Consensus 149 ----------~lv-eiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v---~~~~~------G~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PVV-EVVPAPWTAPATLARAEALYRAAGQSP-VRL---RREID------GFVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEE-EEe---cCCCc------cHHHHHHHHHHHHHHHHHHHc
Confidence 122 245566677899999999999999642 111 01111 11223222 344445556667
Q ss_pred cCCCHHHHHHHH
Q 013877 327 NGMNEDLAYKNT 338 (434)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (434)
.|+++++.....
T Consensus 208 g~~~~~~id~~~ 219 (308)
T PRK06129 208 GVASVDDIDAVI 219 (308)
T ss_pred CCCCHHHHHHHH
Confidence 789999877643
No 60
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.23 E-value=2.9e-10 Score=112.31 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=119.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++|+|||+|.||.++|++|.+. |++|++++++. ...+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNP-EAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 99987766653 3455556667653 4678899999999999999777
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~-~vl---~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+. .++ +++.+.+++|++|++++.+... .+.+ . ....++.++ -+|-.-+... -. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~-d~pv~g~~~~---a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEML-DAPVSGGEPK---AI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEE-EcCCCCCHHH---Hh-------hCcEEEE
Confidence 64 455 3578889999999887766542 2222 0 112345554 2352221110 01 2333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
. .. +.+..+.+..++..+|.. ++... ...-... .+-....+.+. .+++--++..+.+.|+++++.+.
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~-Kl~~n~~~~~~-~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVT-KLANQVIVALN-IAAMSEALVLATKAGVNPDLVYQ 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 33 467889999999999964 11110 0000000 00011111111 12333356677889999997775
No 61
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.22 E-value=3.1e-10 Score=120.30 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=101.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--C--ccccCCCcCCHHhhh---ccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G--~~~~~~~~~~~~Ea~---~~ADiViLa 185 (434)
+|||||+|+||.+||+||.++ |++|++++|+.++..+...+. | +.. ..++++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999998888755543333321 2 332 45677766 468999999
Q ss_pred ecch-HHHHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 186 vpd~-a~~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
+|+. +..++++++.++|++|++|++..-.. ...... .-.+++.++-+...+-.... + .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA----~-------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGA----R-------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHH----h-------cCC-
Confidence 9994 55689999999999999999886432 111111 22457777755444422221 1 343
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +.+.. +.++.+.++-++..++..
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 33454 568999999999999864
No 62
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.21 E-value=5e-10 Score=118.81 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=102.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhc---cCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~---~ADiViL 184 (434)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999888875543333221 24321 11568888886 4899999
Q ss_pred eecchHH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 185 avpd~a~-~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
++||... .++++++.|+|++|++|++..... .....+ ...+++.++ -+|-.-|.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHH---HHh-------cCC
Confidence 9877655 579999999999999998775432 111111 224567766 455222222 111 244
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +.+.. +.++.+.++-++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 568999999999999863
No 63
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.20 E-value=4.2e-10 Score=111.38 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=108.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCcccc--------C-CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------~-~~~~ 170 (434)
++||+|||.|.||.++|.+|..+ |++|+++++..+ ..+.+.+ .|.... . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 38999999999999999999999 999988776533 2333221 232100 0 0123
Q ss_pred CHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+. +.+++||+||.++|...+ ..++++|.+.++++++|+ .++++.+..+.+ .....-.++.+|+--|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997644 468888999999999875 778887766654 22223468888887666652
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++ - +.++...+.+..+.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233 3 4456677889999999999999964
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.16 E-value=6.4e-10 Score=106.32 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=104.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|++|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+. +.+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 9999999887665554443 334332 1468999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecc-----chh-------------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G-----~~i-------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
.+.++++++...+. |++|+++.- +.. ..+++ .+|.. +||..-=+.+...+...=..
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~l~~~~~~- 145 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAVLADLAKP- 145 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHHhccCCCc-
Confidence 99999999998886 888876521 110 01111 22221 44433333444333222111
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.....++| . .+.++++.+.+|...+|..
T Consensus 146 ----~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 146 ----GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred ----CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 112334444 2 2578999999999999875
No 65
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.14 E-value=2.5e-09 Score=108.55 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=110.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC-----CCcCCHHh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~E 174 (434)
++||+|||.|.||.++|..+..+ |++|+++++.... .+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999887765332 2221 122321100 12457889
Q ss_pred hhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++.+||=-|.+.++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977764 68889999999998774 446776655544 222334799999988877631
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.-- +.++...+.+.++.+.+++..+|..
T Consensus 151 -------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 222 3456778889999999999999964
No 66
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.13 E-value=2.2e-09 Score=114.90 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcC-------------cccc
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (434)
.+++|||||+|.||..||.++..+ |++|++.++..+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 9999888776443 333 23445 232
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
..+.++ +.+||+||-++|+.... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.=-|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 346655 56999999999987775 4777888888899988 4778887765544 222223688888877777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLF 321 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~ 321 (434)
.+ ...- +..+...+.+.++.+..++..+|..-+. . .+. .+.+.+-+.. ++..++
T Consensus 151 v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~pv~-v---~d~-------pGfi~Nrll~~~~~Ea~ 205 (507)
T PRK08268 151 LM-------------KLVE-VVSGLATDPAVADALYALARAWGKTPVR-A---KDT-------PGFIVNRAARPYYTEAL 205 (507)
T ss_pred cC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCceEE-e---cCC-------CChHHHHHHHHHHHHHH
Confidence 73 1333 4446677889999999999999975211 1 110 1122232222 333344
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHhcHHHHHH
Q 013877 322 RRFTENGMNEDLAYKNTVECIT---GIISKIISTQGMLAVYN 360 (434)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~e~l~---Gli~~li~e~G~~~m~~ 360 (434)
..+.+.|.++++.....-...- | .-.++-..|++..++
T Consensus 206 ~l~~~g~~~~~~iD~al~~~~G~~mG-Pf~l~D~~Gldv~~~ 246 (507)
T PRK08268 206 RVLEEGVADPATIDAILREAAGFRMG-PFELMDLIGLDVNHA 246 (507)
T ss_pred HHHHcCCCCHHHHHHHHHhcCCCCcC-HHHHHHHhchHHHHH
Confidence 4445556788766553222111 3 345556666654444
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=99.11 E-value=3.6e-10 Score=132.77 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=121.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888876444 45555677765 67899999999999999998777
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhhhhhcccccC-CCC--ccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 192 ~-~vl---~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~-~~d--i~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. +|+ +.+.+.+++|+++++.+-.......+..-.+ ..+ +.++ =+|-.-+.. .-++ |--.++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l-DaPVsGg~~---~A~~-------G~L~im- 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV-DAYVSKGMS---DLLN-------GKLMII- 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE-EccCcCCHH---HHhc-------CCeEEE-
Confidence 5 676 3588889999999988765432211100011 234 5555 345222222 1123 333322
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh---hhhchHH-----HHHHHHHHHHHHcCCCHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG---ILLGAVH-----GIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t---vL~G~~~-----aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.. +.+..+.+..++..+|.....-. -+ .|... .+.+.+. ++.|+ +..+.+.|++++..+.
T Consensus 142 vGG--~~~~~~~~~p~l~~~g~~i~~~~---G~-----~G~g~~~KL~nN~l~~~~~~a~aEA-l~la~~~Gld~~~l~~ 210 (1378)
T PLN02858 142 ASG--RSDAITRAQPFLSAMCQKLYTFE---GE-----IGAGSKVKMVNELLEGIHLVASAEA-MALGVRAGIHPWIIYD 210 (1378)
T ss_pred EcC--CHHHHHHHHHHHHHhcCceEEec---CC-----CCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 233 45678999999999996411000 00 11111 1112222 23333 3457899999998887
Q ss_pred HH
Q 013877 337 NT 338 (434)
Q Consensus 337 ~~ 338 (434)
..
T Consensus 211 vl 212 (1378)
T PLN02858 211 II 212 (1378)
T ss_pred HH
Confidence 43
No 68
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.09 E-value=1.1e-08 Score=105.40 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=152.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhh-hhhcCCcEEEEEecCCch----hHHHHHHc--------CccccCC--CcCCHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR----SFAEARAA--------GFTEENG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~-~~~~~G~~Vivg~r~~~~----s~~~A~~~--------G~~~~~~--~~~~~~Ea~ 176 (434)
+||+|||.|++|.|+|..|.++- +-..+|++|.++.|+..- ..+.-.+. |+...+. ...|..+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 68999999999999999999880 000012688887766421 11111111 1111000 145778999
Q ss_pred ccCCEEEEeecchHHHHHHHHHHh--cCCCCc-EEEEeccchhh---------hhhcccccCCCCccEEEeccCCChhhH
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~--~Lk~g~-iL~~s~G~~i~---------~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
++||+|++++|++...++++++.+ ++++++ +|+.+.|+... .+.+ .++..+ .+..-|+.+..+.
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~-~~LsGPs~A~Eva 167 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPC-CALSGANVANDVA 167 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCe-EEEECCCHHHHHH
Confidence 999999999999999999999998 888776 45688888532 1111 122222 2355666655553
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHH--HHHHH
Q 013877 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV--ESLFR 322 (434)
Q Consensus 245 r~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~ali--ea~~~ 322 (434)
.|.++.+.+... ..+.+..+...+... .|.-.+-.|+.|.+ +||.+--++ -+++-
T Consensus 168 ------------~~~pt~~vias~----~~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviAIa~Gi~ 224 (365)
T PTZ00345 168 ------------REEFSEATIGCE----DKDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIALAAGFC 224 (365)
T ss_pred ------------cCCCcEEEEEeC----CHHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHHHHHHHH
Confidence 356664544432 344555566666665 44455667888887 788877532 22333
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhhhhhhccc--hhHHHHHHHHH
Q 013877 323 RFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCMEILYECY 389 (434)
Q Consensus 323 ~~v~~Gl~~e~A~~-~~~e~l~Gli~~li~----------e~G~~~m~~~vssp~~~eyg~~~~~~~--~p~~~~m~e~~ 389 (434)
-+...|..-.-|+. .++.|+.- +++.+. -.|++.|.--|++-....||..+.... .+..+++++++
T Consensus 225 dGl~~G~N~kaalitrgl~Em~~-l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~ 303 (365)
T PTZ00345 225 DGLGLGTNTKSAIIRIGLEEMKL-FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELL 303 (365)
T ss_pred HhcCCChhHHHHHHHHHHHHHHH-HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhh
Confidence 33345654444444 56666663 444442 245677777777633345777655332 35445554432
Q ss_pred H-hccCChhHHH
Q 013877 390 E-DVAAGSEIRS 400 (434)
Q Consensus 390 ~-~v~~G~f~r~ 400 (434)
. .+--|-.+-.
T Consensus 304 ~~~~vEG~~t~~ 315 (365)
T PTZ00345 304 NGQKLQGTVTLK 315 (365)
T ss_pred CCcEechHHHHH
Confidence 2 4445555443
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.08 E-value=3.5e-09 Score=110.01 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=117.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ccccCCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (434)
+||+|||+|.||.++|.+|.+. |++|+++++...+ .+...+ .| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 4799999999999999999999 9998776654333 222211 23 222 356
Q ss_pred HHhhhccCCEEEEeecchH----------HHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccc-c---CCCCcc-EE
Q 013877 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGL-D---FPKNIG-VI 233 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a----------~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i-~---~~~di~-VI 233 (434)
..++++++|+||+|+|+.. ...+++.|.+++++|++|++.+++... .+....+ . .....+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 456777899999999998877754321 1110000 0 111223 25
Q ss_pred EeccCCC--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhcccccccchhhhh
Q 013877 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (434)
Q Consensus 234 ~v~Pn~p--g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG-~~~~iettf~~E~~~Dlfge~tvL~ 310 (434)
..+|... |..+.+.+ -.+.++ +. .+.+..+.+..++..++ ......++. ...+.-.+-+.+. .
T Consensus 150 ~~~Pe~~~~G~~~~~~~---------~~~~iv-~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~~-~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLL---------NPDRIV-GG--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENTF-R 215 (411)
T ss_pred EECCCcCCCCChhhhhc---------CCCEEE-Ee--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHHH-H
Confidence 6777432 22211111 122323 23 36789999999999997 332221211 1111111112111 1
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 311 GAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 311 G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.--+++.-+...+.+.|+++++.+.
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22233566667778888998887765
No 70
>PLN02858 fructose-bisphosphate aldolase
Probab=99.05 E-value=4.8e-09 Score=123.48 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=122.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++|||||+|+||.+||++|.+. |++|.++++...+ .+...+.|... ..++.++++++|+||+|+|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9999888776443 44455567653 5688899999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhhh---hhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~-~~vl~---eI~~~Lk~g~iL~~s~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ .+++. .+.+.+++|+++++.+-..... +.+....-..++.++ =+|-..++.. -+ .|--.++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A~-------~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---AA-------MGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---hh-------cCCceEE
Confidence 5 57762 4788899999998877654322 211000001466655 4554433331 11 3433323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCccc-ccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~i-ettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
+ .. +.+..+.+..++..+|....+ --..-.-....+. .+ .++++..+.+--++..+.++|++++..+...
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 457899999999999964111 0000000000010 00 1222222222224456689999999887743
No 71
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.04 E-value=2.2e-08 Score=100.27 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.++|++|.++ |++|.+++|... .++.++++++|+||+++|+..+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECChHHH
Confidence 7899999999999999999999 999988877531 2567888999999999999988
Q ss_pred HHHHHHHHhc-CCCCcEEEEec-cc
Q 013877 192 ADNYEKIFSC-MKPNSILGLSH-GF 214 (434)
Q Consensus 192 ~~vl~eI~~~-Lk~g~iL~~s~-G~ 214 (434)
.++++++.++ ++++++|+++. |+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 8999888774 78888776543 44
No 72
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.03 E-value=3e-10 Score=113.36 Aligned_cols=149 Identities=20% Similarity=0.186 Sum_probs=101.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|||||+|+||.+|+.||.++ |+.|+|++|.-++ .+..++.|..+ ..++.|+++++|+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999987544 56666778876 67899999999999999998888
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 192 ~-~vl~---eI~~~Lk~g~iL-~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ ++|. .+...+++|... ++++-+... .+.+ .+. ..+..+| =+| -+|-. ..-+ .|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP-VSGg~--~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP-VSGGV--KGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc-ccCCc--hhhh-------cCeEEEE
Confidence 6 6775 366777788866 577654321 2211 111 2343444 234 11111 1111 3444434
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 013877 264 AVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ . -+....+.+..++..+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 3 3 2456777888888888853
No 73
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.01 E-value=1.3e-08 Score=108.89 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
++||+|||.|.||..||.++.++ |++|++++++.++ .+. ..+.|..... ..+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999888776443 222 2333421000 0134
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
++++ +.+||+||.++|+.... .++.++.+.++++++|. .++.+.+..+.. ......+++.+|.=-|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6654 56999999999976664 57888888888888774 566776654433 22333478888988877773
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
...- +..+...+.+..+.+..++..+|..
T Consensus 151 ----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 3446677889999999999999975
No 74
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.99 E-value=1.5e-09 Score=110.41 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=79.0
Q ss_pred hhccCCcccc-----c---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 93 IVRGGRDLFN-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 93 ~~~~~~~~f~-----~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
.+|+|+|... . ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+.
T Consensus 125 ~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~- 194 (333)
T PRK13243 125 FVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE- 194 (333)
T ss_pred HHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-
Confidence 3567777531 0 1257899 9999999999999999999987 9998766654322 233344554
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s 211 (434)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.+
T Consensus 195 ----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 195 ----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred ----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 357899999999999999976654 5664 688999999998855
No 75
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.99 E-value=2e-08 Score=99.96 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=134.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
+++|||||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999999 9999888776443 222 3333432100 0134
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcC-CCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~L-k~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
+. +.+++||+||-++|+.... +++.++.... +++++|. -++++.+..+.. .....-+++.+|+=.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988775 5778888877 8899875 556666655544 22222368999998887773
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCCcccccchhhhcccccccchhhhhc-hHHHHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRF 324 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~-aiG~~~~iettf~~E~~~Dlfge~tvL~G-~~~aliea~~~~~ 324 (434)
+..- +.++...+.+..+.+..++. .+|...+. . .+. .+.+.. .+..++..++ .+
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v--~d~--------pGfi~nRi~~~~~~Ea~-~l 207 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A--QDR--------SGFVVNALLVPYLLSAI-RM 207 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e--cCC--------CChHHHHHHHHHHHHHH-HH
Confidence 2334 45677888999999999988 59964111 1 111 122222 2222333333 35
Q ss_pred HHcCC-CHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcC
Q 013877 325 TENGM-NEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 325 v~~Gl-~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~~~vs 363 (434)
++.|+ ++++.=...... =.| .-.++...|++.+++...
T Consensus 208 l~eGv~~~~dID~~~~~g~G~p~G-pf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 208 VESGFATAEDIDKAMVLGCAHPMG-PLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HHhCCCCHHHHHHHHHhCCCCCCC-HHHHHHHhccHHHHHHHH
Confidence 56775 465533221111 115 455677777766665544
No 76
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.99 E-value=9.6e-10 Score=101.88 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=78.0
Q ss_pred hccCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 94 VRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 94 ~~~~~~--~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
++.|+| ........+.| ++|||||+|.+|..+|+.|+.- |.+|+++++... ........++. ..+
T Consensus 18 ~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~-----~~~ 84 (178)
T PF02826_consen 18 QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE-----YVS 84 (178)
T ss_dssp HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE-----ESS
T ss_pred HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce-----eee
Confidence 467788 22233478999 9999999999999999999977 999887776533 23335566775 568
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEE-ecc
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGL-SHG 213 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~-s~G 213 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++++- +-|
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 99999999999999996554 35664 57889999998874 445
No 77
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.98 E-value=4.4e-08 Score=98.40 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--Ccc------ccCC--CcCCHHhhh-ccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~~--~~~~~~Ea~-~~AD 180 (434)
+||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. .... ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999887777532 22222221 111 0000 124556666 5899
Q ss_pred EEEEeecchHHHHHHHHHHh-cCCCCc-EEEEeccch
Q 013877 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~-~Lk~g~-iL~~s~G~~ 215 (434)
+||++||+....++++++.+ ++++++ +|++..|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 566888884
No 78
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.98 E-value=2.6e-08 Score=104.07 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=118.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh---------------
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea--------------- 175 (434)
++||+|||+|.||.++|.+|.+. |++|+++++. +...+. ...|..+. .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766654 333333 33343220 01122222
Q ss_pred hccCCEEEEeecc----------hHHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhccccc--CC------CCc
Q 013877 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLD--FP------KNI 230 (434)
Q Consensus 176 ~~~ADiViLavpd----------~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~--~~------~di 230 (434)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+..+ .+.+.... .| .++
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999997 46667888899999999998876554321 11111111 11 122
Q ss_pred cEEEecc--CCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhh
Q 013877 231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308 (434)
Q Consensus 231 ~VI~v~P--n~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tv 308 (434)
.+..+| -.+|..+.+... .+-++. . .+.+..+.+..+...++....+.++. .+-+.-.+-+.+.
T Consensus 153 -~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~~ 218 (415)
T PRK11064 153 -NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENSF 218 (415)
T ss_pred -EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHHH
Confidence 245677 456655432221 333332 2 36788999999999998542222221 1111112222221
Q ss_pred hhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 309 L~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
...--+++.-+...+.+.|+++++.++
T Consensus 219 -~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 219 -RDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 122223666677778888999887755
No 79
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.98 E-value=1.8e-09 Score=98.07 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc----------CCCcCCHHhhhccCCEE
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~Ea~~~ADiV 182 (434)
||+|||.|++|.++|.-|.++ |++|.++.|+. +..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998887764 33333333222100 00146789999999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEE-Eeccc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~ 214 (434)
++++|...+.+++++|.++++++++|+ .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998765 55677
No 80
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.97 E-value=2.7e-08 Score=97.75 Aligned_cols=96 Identities=22% Similarity=0.304 Sum_probs=73.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC-------CcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-------TLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~-------~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+...++ .+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 4799999999999999999998 999887777533 344455556632000 12345554 89999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcE-EEEeccch
Q 013877 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~ 215 (434)
++|.....++++.+.+++.++++ |+...|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988764 45778876
No 81
>PRK07574 formate dehydrogenase; Provisional
Probab=98.95 E-value=3.6e-09 Score=109.76 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=103.8
Q ss_pred hhccCCccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~f~~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.++.|+|.... ....+.| ++|||||+|+||..+|+.|+.. |++|+++++... ..+.....|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 35678886432 2357999 9999999999999999999987 999877766532 223334456542 4
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEeccCCC
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
.+.+|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-. +..+++ +..-....||..--|.-+
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp~ 318 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAPA 318 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCCC
Confidence 58999999999999999977664 6775 588999999988744 3432 122322 111123456766666433
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e 275 (434)
.+.. +.. -|.++++|- ..|.++.+
T Consensus 319 d~pL---~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 319 DHPW---RTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred CChH---HhC--------CCeEECCccccCcHHHHH
Confidence 3332 221 256677775 33444444
No 82
>PLN03139 formate dehydrogenase; Provisional
Probab=98.93 E-value=4.5e-09 Score=109.13 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=81.8
Q ss_pred hhccCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~f~---~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.+++|+|... .....+.| ++|||||+|+||..+|+.|+.. |.+|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 3567888632 12257999 9999999999999999999987 99987665542 2233344456543 4
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEec
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.+.+|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999976664 6775 5889999999888553
No 83
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.92 E-value=8.7e-08 Score=97.30 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=130.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--------CccccC--CCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~~~~~~~Ea~~~AD 180 (434)
++||+|||.|+-|.|+|+-|.++ |++|.++.|... ..+.-... |+...+ ..+.|+.+++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 37999999999999999999999 999988877532 12111111 211100 12568999999999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
+|++++|-+.+.++++++.+++++++++ +.+.|+.. +.+++ .+|.+.-++..-|+....+
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV--------- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV--------- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH---------
Confidence 9999999999999999999999888865 46778742 23333 4454444556667665444
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH--HHHHHHHHHHHcCCC
Q 013877 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTENGMN 330 (434)
Q Consensus 253 ~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--liea~~~~~v~~Gl~ 330 (434)
.+|.|+-+++.... .+.+..+...+-.. +|.--+..|..|.+ ++|.+-- -|-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~d----~~~a~~v~~~f~~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASND----QEAAEKVQALFSSP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecCC----HHHHHHHHHHhCCC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 25688867666532 23333444444444 44445566777776 6777765 334455555566666
Q ss_pred HHHHHH-HHHHHHHH
Q 013877 331 EDLAYK-NTVECITG 344 (434)
Q Consensus 331 ~e~A~~-~~~e~l~G 344 (434)
-.-|+. -++.||.-
T Consensus 208 akaalitrGL~Em~r 222 (329)
T COG0240 208 AKAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHHhHHHHHHH
Confidence 665554 45566653
No 84
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.90 E-value=8.4e-08 Score=98.24 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=136.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC----chhHHHHHH--------cCccccCC--CcC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G--------~~Vivg~r~~----~~s~~~A~~--------~G~~~~~~--~~~ 170 (434)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. +...+.-.+ .|+...+. ...
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8888887632 221111111 12211010 135
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchhh---------hhhcccccCCCCccEEEeccCCC
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~---------~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++.++ .+..-|+.+
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~-~~lsGP~~A 150 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPC-GVLSGANLA 150 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCe-EEeeCcchH
Confidence 7889999999999999999999999999999998874 5688887543 1111 122222 234556554
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHH-
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE- 318 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~alie- 318 (434)
..+ . +|.++-+.+... .+ ...+.++.+...+-.. .|+-..-.|+.|.+ +||.+--++-
T Consensus 151 ~Ev-----a-------~~~pt~~~ia~~~~~-~~~~~a~~~~~lf~~~-----~frv~~s~Dv~GvE--l~galKNv~AI 210 (342)
T TIGR03376 151 NEV-----A-------KEKFSETTVGYRDPA-DFDVDARVLKALFHRP-----YFRVNVVDDVAGVE--IAGALKNVVAI 210 (342)
T ss_pred HHH-----H-------cCCCceEEEEeCCCc-chHHHHHHHHHHhCCC-----CEEEEEcCCcccch--hhHHHHHHHHH
Confidence 444 2 345554444332 11 1134455555555554 44445567788877 7888775332
Q ss_pred -HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhhhhhhc
Q 013877 319 -SLFRRFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSA 376 (434)
Q Consensus 319 -a~~~~~v~~Gl~~e~A~~-~~~e~l~Gli~~li~----------e~G~~~m~~~vssp~~~eyg~~~~~ 376 (434)
+++--+...|..-.-|+. .++.|+.- +++.+. -.|++.|.--|++-....||..+..
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~~-l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~ 279 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMIK-FARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAK 279 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHh
Confidence 222223344544444433 45566653 444442 2345666666666233457766543
No 85
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.88 E-value=4.4e-09 Score=106.86 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=103.2
Q ss_pred hccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 94 ~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
+|+|.|..... ...+.| ||+||||+|.+|..+|+.++.- |++|+.+++..++ +.+...+... ..+.
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 38889976222 257889 9999999999999999999987 9998766653333 2344455553 5689
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec-cc------hhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~-G~------~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
++++++||+|.+++|-..- ..++. +.+..||+|++++-++ |- .+..+++ +-.-...+||.---|..+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCCh
Confidence 9999999999999995555 46775 5788899999887553 32 1333333 222234667777777666544
Q ss_pred HHHHHhhcccccCCCceEEEeecCC
Q 013877 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 244 vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
+|.. -+.++++|--
T Consensus 271 ---L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 ---LWDL--------PNVILTPHIG 284 (324)
T ss_pred ---hhcC--------CCeEECCccc
Confidence 3332 3455677763
No 86
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.88 E-value=1.1e-08 Score=104.07 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
...+.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 367899 9999999999999999999988 9998776654322111 1111 3478999999999999
Q ss_pred eecchHH-HHHH-HHHHhcCCCCcEEE-Eeccc
Q 013877 185 LISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGF 214 (434)
Q Consensus 185 avpd~a~-~~vl-~eI~~~Lk~g~iL~-~s~G~ 214 (434)
++|.... ..++ +++++.|++|++|+ .+-|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 9997765 3444 46889999999887 44564
No 87
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.88 E-value=5.9e-09 Score=104.97 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=77.4
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+++|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .|+.. ...++
T Consensus 106 ~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 456788875544 68999 9999999999999999988876 9998776654211 23321 03578
Q ss_pred HhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe
Q 013877 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s 211 (434)
+|++++||+|++++|..... .++. +.+..||+|++++.+
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~ 208 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINV 208 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEEC
Confidence 99999999999999977764 5665 578889999988744
No 88
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.88 E-value=2.6e-08 Score=101.04 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=119.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ -...++.+|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 6899999999999999999999 99988887765 334555566542 34555555 57899999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecc---chhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNYEKIFSC-MKPNSILGLSHG---FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~eI~~~-Lk~g~iL~~s~G---~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
+..++...-+. +|.|+++++.-. |...-+++ .+|+|+|++.+||..--..+ . ..++|.|.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv----n----h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV----N----HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC----C----CccccCceEEEEe
Confidence 88888876555 899998875544 33333444 78999999999995322111 0 1257888866544
Q ss_pred CCC----CHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 267 QDV----DGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 267 qdv----sg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.-- ..+.-|...+++.-.|+. .++.+.+++++.
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDki 226 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDKI 226 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeeccccc
Confidence 321 257889999999999984 666666677644
No 89
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.87 E-value=8.4e-09 Score=104.84 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=69.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nL-rds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+.| ++|||||+|+||.++|+.| +.. |.+|++.++...+. ...++.. ..+.++++++||+|++
T Consensus 142 ~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIvl 206 (332)
T PRK08605 142 RSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVTL 206 (332)
T ss_pred ceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEEE
Confidence 57899 9999999999999999999 434 88876555432221 1122321 3578999999999999
Q ss_pred eecchHHHHHH--HHHHhcCCCCcEEEEe-ccc
Q 013877 185 LISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (434)
Q Consensus 185 avpd~a~~~vl--~eI~~~Lk~g~iL~~s-~G~ 214 (434)
++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 207 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred eCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99988776544 3578899999988744 453
No 90
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.85 E-value=8.4e-09 Score=104.83 Aligned_cols=135 Identities=25% Similarity=0.280 Sum_probs=95.2
Q ss_pred cchhhccCCcccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 90 DEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 90 ~e~~~~~~~~~f~-----~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
.+.-+|.|+|... .....+.| ||+||||+|.||.++|+.++.- |.+|+++.+... .+...+.++.
T Consensus 121 ~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~- 190 (324)
T COG1052 121 GDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR- 190 (324)
T ss_pred HHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce-
Confidence 3456788888664 33468999 9999999999999999999855 889877766532 2333334454
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEe
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAV 235 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v 235 (434)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+-+ =|-. +.-+++ +..-....||.--
T Consensus 191 ----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e~ 265 (324)
T COG1052 191 ----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFEN 265 (324)
T ss_pred ----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecCC
Confidence 456999999999999999987775 5665 588899999988844 3421 223333 2222346677777
Q ss_pred ccCC
Q 013877 236 CPKG 239 (434)
Q Consensus 236 ~Pn~ 239 (434)
-|.-
T Consensus 266 Ep~~ 269 (324)
T COG1052 266 EPAL 269 (324)
T ss_pred CCCC
Confidence 7754
No 91
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.84 E-value=7.4e-08 Score=89.86 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCcccc--------C-CCcCCH
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE--------N-GTLGDI 172 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~--------~-~~~~~~ 172 (434)
||+|||.|.||.++|..+..+ |++|++.+...+ ..+.+. +.|-... . ....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 222211 1121100 0 014577
Q ss_pred HhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHh
Q 013877 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (434)
++++ +||+||=++|..... +++.++.+.+.++++| +-++++.+..+.. ..+..-+++.+|+=.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7877 999999999976664 6999999999999987 4778888887765 333344799999988876521
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 250 ~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.-- +..+...+.+.++.+.+++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4457778889999999999999853
No 92
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.84 E-value=1e-08 Score=103.61 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=76.8
Q ss_pred hccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH
Q 013877 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (434)
Q Consensus 94 ~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~ 173 (434)
.+.|+|..... ..++| ++|||||+|+||..+|+.|+.. |++|+++.+...+ . .++.. ..+..+.+
T Consensus 121 ~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~ 185 (312)
T PRK15469 121 QNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELS 185 (312)
T ss_pred HHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHH
Confidence 46678854333 56889 9999999999999999999987 9998776654221 1 12211 01135789
Q ss_pred hhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEec
Q 013877 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 9999999999999976664 6665 5888999999887553
No 93
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.84 E-value=1.2e-08 Score=103.59 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred hhhccCCccccc----cccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC
Q 013877 92 YIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (434)
Q Consensus 92 ~~~~~~~~~f~~----~~~~~~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~ 166 (434)
..+|+|+|.... ....+.| ++|||||+|+||..+|+.++ .- |.+|++.++... .+.....|..
T Consensus 123 ~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~--- 190 (323)
T PRK15409 123 ERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR--- 190 (323)
T ss_pred HHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE---
Confidence 446778885321 1257999 99999999999999999987 44 888876554422 2222344554
Q ss_pred CCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+-+ -|-. +.-+++ +.......||..--|
T Consensus 191 --~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~EP 267 (323)
T PRK15409 191 --YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDVFEQEP 267 (323)
T ss_pred --ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCCC
Confidence 458999999999999999966654 5665 588899999988744 3422 223332 111123456666666
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~ 274 (434)
-.+.+. ++. =-+.++++|-. .|.++.
T Consensus 268 ~~~~~p---L~~--------~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 268 LSVDSP---LLS--------LPNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCCch---hhc--------CCCEEEcCcCCCCcHHHH
Confidence 432222 222 14667788863 333443
No 94
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.84 E-value=9.7e-09 Score=110.37 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=80.7
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 45677885432 1257899 9999999999999999999987 99987665532 234455567653 347
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.+
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 228 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNC 228 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEc
Confidence 99999999999999997755 45664 577899999988755
No 95
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.83 E-value=2.3e-08 Score=100.91 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=101.8
Q ss_pred hhccCCcccccc-------ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc
Q 013877 93 IVRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (434)
Q Consensus 93 ~~~~~~~~f~~~-------~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (434)
.+|+|+|..... ...+.| |+|||||+|++|..+|+.++.- |.+|+++++.. +. ...++.
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~-~~----~~~~~~-- 186 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSG-KN----KNEEYE-- 186 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCc-cc----cccCce--
Confidence 357778853311 247899 9999999999999999999866 99987665532 11 123443
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEec
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (434)
..+.+|++++||+|++++|-... ..++. +.+..||||++|+ .+-|-. +..+++..+. ...||..--
T Consensus 187 ---~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~E 261 (311)
T PRK08410 187 ---RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKE 261 (311)
T ss_pred ---eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCC
Confidence 45899999999999999996555 46675 5888999999887 444532 2334332222 456777666
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a 277 (434)
|..+.+.. +..- .=-|.++++|-- .|.++.+..
T Consensus 262 P~~~~~pL---~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 262 PMEKNHPL---LSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCChh---hccC-----CCCCEEECCccccCCHHHHHHH
Confidence 64443332 2110 002677888863 344544443
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.81 E-value=1.3e-08 Score=109.38 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=81.1
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| |+|||||+|+||..+|+.|+.. |++|+++++.. ..+.+...|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----Ec
Confidence 35677885422 1257899 9999999999999999999987 99987666542 234455567653 48
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.+
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~ 229 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINC 229 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEEC
Confidence 99999999999999997765 46774 688999999988755
No 97
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.81 E-value=2.2e-07 Score=91.68 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=73.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC---------CcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|+||..+|..|.++ |++|.+..| .+ ..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999887777 33 344455556532110 123456667899999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
|+++|..+..++++++.+++.++++| +...|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 99999999999999999999888765 4667875
No 98
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.80 E-value=7.9e-08 Score=96.68 Aligned_cols=97 Identities=27% Similarity=0.331 Sum_probs=72.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--C----------CcCCHHhhhcc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G----------TLGDIYETISG 178 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~----------~~~~~~Ea~~~ 178 (434)
|+||+|||+|.||.++|..|.++ |++|++..|. +..+...+.|....+ + ...+..++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 47899999999999999999999 9998887764 223444555653211 0 01222356789
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccch
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~ 215 (434)
+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 9999999999998999999999999988765 556775
No 99
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.79 E-value=2.7e-07 Score=90.74 Aligned_cols=225 Identities=13% Similarity=0.210 Sum_probs=153.3
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccC
Q 013877 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (434)
Q Consensus 111 ~kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~ 166 (434)
++||+|.|.||| |..||-.+..+ |++|+....+ +...|++-+++|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 378888888887 56677777777 9999877543 335599999999986
Q ss_pred CCcCCHHhhhccCCEEEEeecch-HHHHHHHHHHhcCCCCcEEEEe---ccchhh-hhhcccccCCCCccEEEeccC-CC
Q 013877 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLS---HGFLLG-HLQSMGLDFPKNIGVIAVCPK-GM 240 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~-a~~~vl~eI~~~Lk~g~iL~~s---~G~~i~-~~~~~~i~~~~di~VI~v~Pn-~p 240 (434)
+.|-.++++.+++.+|-||=. ....+.++|.+++..|++|+-. +-+.+. .++...-..++|+-|...||- .|
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677789999999999999987 5568999999999999998633 344443 333322233478899999994 46
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHH--HH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG--IV 317 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~a--li 317 (434)
|+.-.+.|.-+ |++-.. -.-+|.++.+++.+|+++.|.. +++. .|+....+- +|++.. .+
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~VaD-mg~lvtav~l 213 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVAD-MGVLVTAVAL 213 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhhh-hHHHHHHHHH
Confidence 66654455443 222211 1235789999999999999964 1222 222222222 333332 33
Q ss_pred HHHHHH---H-HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 318 ESLFRR---F-TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 318 ea~~~~---~-v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
.+..|. + .-.|-|.|+--+....++. -++-++-.+|++.|...+.
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 333332 2 2468898888887777776 5799999999988877654
No 100
>PLN02928 oxidoreductase family protein
Probab=98.78 E-value=1.8e-08 Score=103.22 Aligned_cols=163 Identities=22% Similarity=0.216 Sum_probs=99.9
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH--H----cCccccC
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEEN 166 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--~----~G~~~~~ 166 (434)
.+++|+|..+.+ ..+.| ++|||||+|.||..+|+.|+.. |.+|+++++...+...... . ..+....
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~ 214 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEK 214 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhcccccccccccccc
Confidence 356677854333 57999 9999999999999999999877 9998766654221111100 0 0000000
Q ss_pred CCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
....+.+|++++||+|++++|.... ..++. +.+..||+|++|+.+ -|-. +.-+++ +.......||...-|
T Consensus 215 ~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~EP 293 (347)
T PLN02928 215 GGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWSEP 293 (347)
T ss_pred CcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCCCC
Confidence 1245889999999999999996555 45665 688899999988854 3432 222222 112123557776666
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
-.+.+. ++.. -+.++++|.. .+.+..+
T Consensus 294 ~~~~~p---L~~~--------~nviiTPHia~~t~~~~~ 321 (347)
T PLN02928 294 FDPDDP---ILKH--------PNVIITPHVAGVTEYSYR 321 (347)
T ss_pred CCCCCh---hhcC--------CCEEECCcCCCChHHHHH
Confidence 433332 2221 3667888863 3444443
No 101
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.73 E-value=3.8e-08 Score=84.77 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=59.2
Q ss_pred ccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 299 ~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|++|..
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCCCC
Confidence 34578888999999998 88999999999999999999999999999 8999998885 999999999964
No 102
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.73 E-value=4.4e-08 Score=99.81 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=93.6
Q ss_pred cccccchhhccCCc----cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC
Q 013877 86 LADRDEYIVRGGRD----LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (434)
Q Consensus 86 ~~~~~e~~~~~~~~----~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (434)
|-+-.|. ++.|+| .+..+ +.++| |+|||+|+|+||..+|++|+.. |..+.+..|. ....+.+.+.+
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g-~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLG-YDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhh-hhcCCccccCCcccc-ccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 4444443 556667 22223 78899 9999999999999999999986 8444444443 44455665555
Q ss_pred ccccCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEE-Eeccchh------hhhhcccccCCCCccE
Q 013877 162 FTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSMGLDFPKNIGV 232 (434)
Q Consensus 162 ~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~-~s~G~~i------~~~~~~~i~~~~di~V 232 (434)
.. ..+.+|.+.++|+|++++|..... .++. ++..+||+|.+|+ .+=|--+ ..+.+ +-....+.||
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCcccccccc
Confidence 54 358999999999999999988775 6776 6899999999877 4434321 22222 2233456777
Q ss_pred EEecc
Q 013877 233 IAVCP 237 (434)
Q Consensus 233 I~v~P 237 (434)
.---|
T Consensus 280 f~~EP 284 (336)
T KOG0069|consen 280 FEPEP 284 (336)
T ss_pred cCCCC
Confidence 77777
No 103
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.69 E-value=3.3e-07 Score=87.23 Aligned_cols=126 Identities=15% Similarity=0.033 Sum_probs=92.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||- |.||..++..++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 48999998 99999999999999 98864 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
..++++++. .+|+|+.+++-...+ ...++|..||.. |+. .++...+ -++++ +....+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMf-Gp~------~a~~~lf--~~~iv-~~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLF-GPM------SYNDGVH--RTVIF-INDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCC-CCC------cCccccc--ceEEE-ECCCCC
Confidence 999998864 268899988753221 134799999944 432 1111111 24444 455556
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.++.+..++++. | .++++++.++|++.
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~ 127 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLL 127 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHH
Confidence 678888999988 6 47888988888754
No 104
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.68 E-value=1.7e-07 Score=94.71 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=98.7
Q ss_pred hccCCccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC
Q 013877 94 VRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (434)
Q Consensus 94 ~~~~~~~f~~-------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~ 166 (434)
+++|+|.... ....+.| ++|||||+|.+|..+|+.++.- |.+|+++.+.... .....
T Consensus 124 ~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~--- 187 (314)
T PRK06932 124 QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG--- 187 (314)
T ss_pred HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc---
Confidence 4567774321 1247899 9999999999999999999866 9898655432111 11111
Q ss_pred CCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++ +..-....||..--|
T Consensus 188 --~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~EP 264 (314)
T PRK06932 188 --YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKEP 264 (314)
T ss_pred --cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCCC
Confidence 34789999999999999996555 46675 5888999999887 455532 223332 112223567777667
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a~ 278 (434)
-.+.+...+.+.+- -|.++++|-- .|.++.+...
T Consensus 265 ~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 265 PEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHH
Confidence 44333321111111 3667777763 3445554443
No 105
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.67 E-value=7e-07 Score=99.49 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=136.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCcccc-------C--CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------N--GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~-------~--~~ 168 (434)
..+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+.+ .+.|-... + ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999987765533 22221 12221100 0 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +.+++||+||=++|..... +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+=-|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999966664 79999999999999884 677888776655 223334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++- .+ ..+-+.+-+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d-------~pGfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----ND-------CPGFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----CC-------cccchHHHHHHHHHHHHHHHH
Confidence 222 33566788899999999999999652211 11 112233333321122233467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHH
Q 013877 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVY 359 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~ 359 (434)
+.|.++++-=...-.. =.|+ -.++-..|++.++
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~GP-f~l~D~~Gld~~~ 550 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMGP-AYLLDVVGIDTGH 550 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccCH-HHHHHhhhHHHHH
Confidence 8898887644321111 1252 4566666775444
No 106
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.67 E-value=5.9e-07 Score=100.39 Aligned_cols=212 Identities=11% Similarity=0.126 Sum_probs=134.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCcccc-------C--CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------~--~~ 168 (434)
..+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-... + ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999999 999987765432 2222 122221100 0 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..++ +.+++||+||=++|..... +++.++.+.++|+++|. -++++.+..+.. .....-+|+..|+=.|.+.++
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2344 4679999999999976664 79999999999999884 677888876655 222334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++- .+ ..+-+.+-+..-+-.-.-.++
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d-------~pGFi~NRi~~~~~~ea~~lv 536 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIVV----KD-------GPGFYTTRCLGPMLAEVIRLL 536 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEEE----CC-------cCCchHHHHHHHHHHHHHHHH
Confidence 222 33466788899999999999999652111 11 112222222221111222467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHH
Q 013877 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAV 358 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m 358 (434)
+.|+++++-=.. +..+ .|+ -.++-..|++.+
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~GP-~~l~D~vGld~~ 570 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVGA-ATLADEVGVDVA 570 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCCH-HHHHHHhhHHHH
Confidence 889988765442 2221 142 355666666443
No 107
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.66 E-value=6.6e-08 Score=97.80 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=98.1
Q ss_pred hhccCCccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc
Q 013877 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (434)
Q Consensus 93 ~~~~~~~~f~~-------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (434)
-+|+|+|.... ....+.| ++|||||+|++|..+|+.++.- |.+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 45778885432 1246899 9999999999999999999866 9998765543211 1122
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEec
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (434)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++ +......+||.---
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 34789999999999999996555 46665 5888999999887 444532 223332 22222356777666
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~ 276 (434)
|-.+.+. ++... =-+.++++|-- .|.+..+.
T Consensus 264 P~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~ 295 (317)
T PRK06487 264 PPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQR 295 (317)
T ss_pred CCCCCCc---hhhcC------CCCEEECCccccCCHHHHHH
Confidence 6433322 22100 02667777763 34444433
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.66 E-value=1.9e-06 Score=95.96 Aligned_cols=214 Identities=10% Similarity=0.089 Sum_probs=137.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (434)
+.+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999987776533 2222 2222221100 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976664 79999999999999884 678888776655 223334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++ . .+ .-+-+.+-+...+-.-+-.++
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~d-------~pGfv~nRi~~~~~~ea~~lv 514 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---ND-------CPGFFVNRVLFPYFAGFSQLL 514 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---cC-------cCchhHHHHHHHHHHHHHHHH
Confidence 222 3357778889999999999999965221 1 11 112233333221112233467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 013877 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~ 359 (434)
+.|.++++-=...-+.+ .| --+++-..|++.++
T Consensus 515 ~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~ 550 (715)
T PRK11730 515 RDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAH 550 (715)
T ss_pred HcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHH
Confidence 88888876544322211 25 23566666765444
No 109
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.66 E-value=8.3e-07 Score=93.35 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=109.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc------------CCCcCCHHhhhccC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~------------~~~~~~~~Ea~~~A 179 (434)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..+- .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999754 6787655554 43344433 444210 00123445678999
Q ss_pred CEEEEeecchH----------HHHHHHHHHhcCCCCcEEEEeccchhh--------hhhc-ccccCCCCccEEEecc--C
Q 013877 180 DLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG--------HLQS-MGLDFPKNIGVIAVCP--K 238 (434)
Q Consensus 180 DiViLavpd~a----------~~~vl~eI~~~Lk~g~iL~~s~G~~i~--------~~~~-~~i~~~~di~VI~v~P--n 238 (434)
|+||+|+|... .....+.|.+++++|++|++.+-+..+ .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999651 223344689999999988766543211 1111 12221111 2233333 4
Q ss_pred CChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHHHH
Q 013877 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (434)
Q Consensus 239 ~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~ali 317 (434)
.+|..+.++. -.+- +.... +.+..+.+..+...+... .+..++ ..+-+.-.+-+.+ +...--+++
T Consensus 157 ~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAES-IKVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecC-HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444421111 1233 33343 356777888888887521 122121 1111111121221 122223466
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 013877 318 ESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~ 336 (434)
.-++..+.+.|++.++.+.
T Consensus 223 NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HHHHHHHHHhCcCHHHHHH
Confidence 6678888889999887765
No 110
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.64 E-value=7.2e-08 Score=100.79 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=76.3
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
.+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |.+|+++++.. + ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~-~----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIED-K----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCc-c----cccCCcee----cCC
Confidence 35677885432 1367999 9999999999999999999877 99987655431 1 11123322 458
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
++|++++||+|++++|.... ..++. +.+..||+|++|+-+
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999996554 46775 588899999988744
No 111
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.62 E-value=1.3e-06 Score=97.20 Aligned_cols=212 Identities=11% Similarity=0.137 Sum_probs=134.3
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC---------CC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (434)
.+++|+|||.|.||..+|..+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999988 77 999987765432 22222 122211000 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +++++||+||=++|..... +++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5689999999999976664 79999999999999884 677888877755 222334799999988887631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~ 324 (434)
.-- |.++...+.+..+.+.+++..+|...++-. + .-+-+.+-+.. ++..++ .+
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~---d--------~pGfi~nRl~~~~~~EA~-~l 510 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIVVR---D--------GAGFYVNRILAPYINEAA-RL 510 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEEEe---c--------cCcHHHHHHHHHHHHHHH-HH
Confidence 222 445778889999999999999997522111 1 11222232222 333333 46
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 013877 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (434)
Q Consensus 325 v~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~~ 360 (434)
++.|+++++.=. ++..+ .| --.++-..|++.+++
T Consensus 511 v~eGv~~~dID~-a~~~~G~p~G-Pf~~~D~~Gld~~~~ 547 (708)
T PRK11154 511 LLEGEPIEHIDA-ALVKFGFPVG-PITLLDEVGIDVGTK 547 (708)
T ss_pred HHcCCCHHHHHH-HHHHcCCCCC-HHHHHHHhhhHHHHH
Confidence 778988755433 22211 14 244555566654443
No 112
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.62 E-value=1.4e-06 Score=96.80 Aligned_cols=211 Identities=12% Similarity=0.136 Sum_probs=132.9
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC---------CC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (434)
.+++|+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999987765532 22222 112211000 01
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +++++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977664 79999999999999884 677888876655 222334799999988877631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH--HHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRR 323 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--liea~~~~ 323 (434)
.-- |..+...+.+..+.+.+++..+|..-++ . .+ .-+-+.+-+.. +.|+ -.
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v--~d--------~pGfi~nRl~~~~~~Ea--~~ 504 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V--AD--------KAGFYVNRILAPYMNEA--AR 504 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E--cc--------ccchHHHHHHHHHHHHH--HH
Confidence 222 3346677889999999999999965221 1 11 11222222222 3333 23
Q ss_pred HHHcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHH
Q 013877 324 FTENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYN 360 (434)
Q Consensus 324 ~v~~Gl~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~~ 360 (434)
+++.|.++++.=.. +.. -.| .-.++-..|++.+++
T Consensus 505 l~~~G~~~~dID~a-~~~~G~p~G-Pf~l~D~vGld~~~~ 542 (699)
T TIGR02440 505 LLLEGEPVEHIDKA-LVKFGFPVG-PITLLDEVGIDVGAK 542 (699)
T ss_pred HHHCCCCHHHHHHH-HHHcCCCcC-HHHHHHHhchHHHHH
Confidence 56788887654432 221 124 345666667654443
No 113
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.60 E-value=4.5e-08 Score=87.09 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=66.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+..++++++|+|++++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 566 9999999999999999999987 6 5777777764444444544443100001456777889999999999
Q ss_pred cchHH-HHHHHHHHhcCCCCcEEEEecc
Q 013877 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~-~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+..+ .+-.......++++++++++.-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~ 117 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCc
Confidence 99886 1111001233678888887643
No 114
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.58 E-value=3.5e-07 Score=91.44 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=70.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.+|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 36788 9999999999999999999988 9999888886433 344555565420 123567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|...+. ++..+.|+++.+|++.+
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeC
Confidence 9976332 34567789999888664
No 115
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.58 E-value=2.8e-06 Score=85.92 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=108.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCccccC---------CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~ 171 (434)
++||+|||.|.||+.+|..+... |++|.+.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999999887 899988776522 222333333322110 00122
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+. ++++||+||=+++-..- .+++.++-++.+|+++| +-.+++++..+.+. ..-| -+|+..|+=-|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCcc----
Confidence 22 78999999999995554 37999999999999998 57788888766552 2323 369999998888773
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~al-iav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.+ +......+.+..+.+.+++..+|.+
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 321 2245566779999999999999943
No 116
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.56 E-value=2.1e-06 Score=91.19 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhcc---CCEEEEeecchHHH-H
Q 013877 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQA-D 193 (434)
Q Consensus 122 mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~---ADiViLavpd~a~~-~ 193 (434)
||.+||+||.++ |++|.+++|+.++..+..... |+.. ..+++|+++. +|+||+++|+..+. +
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988866655554432 3554 6789998875 89999999988665 7
Q ss_pred HHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 194 vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
|++++.++|.+|.+|++..-.... .... ..-.+++.+| -+|-.-|.. .-+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fv-dapVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFI-GMGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEE-ecCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 888999999999999988643211 1111 1113567766 455222222 111 354 4 44565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 013877 271 GRATNVALGWSVALGSP 287 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~ 287 (434)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 68999999999999863
No 117
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.55 E-value=7.1e-07 Score=90.68 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=111.5
Q ss_pred chhhccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 91 EYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 91 e~~~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
-.-++.|+|...+. .-.+.| |++||||+|.+|.-.|..++.- |..++.++.- ...+++++.|+. .
T Consensus 126 ~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq-----~ 191 (406)
T KOG0068|consen 126 SASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ-----L 191 (406)
T ss_pred heeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce-----e
Confidence 33467899977665 679999 9999999999999999999887 8887655544 346788888987 6
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-cc-c-----hhhhhhcccccCCCCccEEEeccCCC
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG-F-----LLGHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G-~-----~i~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
.+.+|++..||+|-|.+|-.... .++. +-+..||+|..|+-+ -| + .+.-+++ +..-..-+||...-|..-
T Consensus 192 vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Epp~~ 270 (406)
T KOG0068|consen 192 VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEPPKN 270 (406)
T ss_pred eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCCCcc
Confidence 78999999999999999965554 5665 577889999977744 33 2 1223333 333344567887777655
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg 271 (434)
+.. +++ ..- -+.+.++|+..+-
T Consensus 271 ~~~-~~L-v~h-------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 271 GWD-SEL-VSH-------PNVIVTPHLGAST 292 (406)
T ss_pred chh-HHH-hcC-------CceeecCccccch
Confidence 422 122 221 3566788887665
No 118
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.52 E-value=6.1e-06 Score=82.80 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=95.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCC-------cCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~Ea~~~ADiV 182 (434)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+...+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7899999999999999999999 99998887753 233445564321 110 11223356789999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-hhhhcccccCCCCccEEE------eccCCChhhHHHHHhhcccc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-~~~~~~~i~~~~di~VI~------v~Pn~pg~~vr~ly~~G~~~ 254 (434)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. .|+. .....|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999988888999999999887755 46668753 23332 33433 2332 3344555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCC
Q 013877 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (434)
Q Consensus 255 ~G~Gv~aliav~qdvs-----g~a~e~a~~la~aiG~~ 287 (434)
.|.|... +....... .+..+...+++...|..
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 1344333 33322222 34555566778887865
No 119
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.52 E-value=9.5e-07 Score=97.70 Aligned_cols=136 Identities=13% Similarity=-0.036 Sum_probs=102.2
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCC-ccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~d-i~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
||||+|+....++++++.|+++++++|+|+.+++....+...-.++.+ .+||..|| +.|++. ..|+.....+++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999998743222111133432 57999999 556553 456666666678899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
+++++..+.+.++++.+++++..+|+ +++.++.++|++.- +.+++..|-+.-++.+.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~-----A~iShlpH~~a~~l~~~~~ 137 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVF-----AAVSHLPHVLSFALVEQIL 137 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHhhHHHHHHHHHHHHHh
Confidence 99999998889999999999999995 68888888888553 3345555555555555543
No 120
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.49 E-value=2.9e-07 Score=95.53 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=67.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++. +. . ...... ..+.+|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~--~~--~-~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPP--RA--D-RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCc--cc--c-cccccc-----cCCHHHHHhhCCEEEEe
Confidence 35789 9999999999999999999987 9998765432 11 0 111111 45899999999999999
Q ss_pred ecchH-----HHHHHH-HHHhcCCCCcEEEEec
Q 013877 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+|-.. ...++. +.+..||+|++|+-++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 99554 345664 5788999999988553
No 121
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.46 E-value=3.2e-07 Score=95.31 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 45788 9999999999999999999987 9998766542111 1 12111 45899999999999999
Q ss_pred ecchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 013877 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~g~iL~~s 211 (434)
+|... ...++. +.+..||+|++|+-+
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 99754 345665 578889999988744
No 122
>PLN02306 hydroxypyruvate reductase
Probab=98.46 E-value=7e-07 Score=92.92 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=68.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-HHHcCc-------cccC-CCcCCHHhhh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYETI 176 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~~-~~~~~~~Ea~ 176 (434)
..+.| ++|||||+|.+|..+|+.|+.. +|.+|+++++........ ....|. ...+ ....+.+|++
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~-----fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEG-----FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 56899 9999999999999999998633 288987665442211111 011221 0000 0124799999
Q ss_pred ccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
++||+|++++|-... ..++. +.+..||+|++|+-+
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~ 271 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNA 271 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEEC
Confidence 999999999996554 46775 588899999998844
No 123
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.45 E-value=3.6e-06 Score=87.57 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----------------cCccccCCCcCCHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~Ea 175 (434)
+||+|||+|.||..+|..+ .. |++|++.++. ....+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 4899999999999999655 46 8888765554 433444332 11110 002346788
Q ss_pred hccCCEEEEeecch-----------HHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 176 ~~~ADiViLavpd~-----------a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999954 33567778877 79999887665443
No 124
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.44 E-value=1.1e-05 Score=80.36 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=125.9
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccch---hh-hhhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~---i~-~~~~~~i~~~~di~VI 233 (434)
+.|+.+ +.|-.|+++++|++|+-+|-.. +.++++++.+++++|++|+.+.-++ +. .++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 468876 6778899999999999999776 6899999999999999998665443 21 2222 22 5899999
Q ss_pred EeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhch
Q 013877 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (434)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~ 312 (434)
..||-+ .+.. .| -.++ ...-++.++.+...+|++.+|.. +.+ ..|+.+..+-.|-.
T Consensus 197 S~HPaa-VPgt------------~~-q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~--------PA~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KG-QVYI-AEGYASEEAVNKLYELGKKARGKAFKM--------PANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CC-ceEe-ecccCCHHHHHHHHHHHHHhCCCeeec--------chhhccchhhHHHH
Confidence 999933 2221 12 1223 36778999999999999999985 122 22344444444444
Q ss_pred HHH----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 313 VHG----IVESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 313 ~~a----liea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+.+ .+..-++..+ -.|-|.+.+-..+.++|.. ++.|+.++|+..|.+.+.
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLn 308 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcC
Confidence 444 3333444454 4599999999999999985 999999999999999886
No 125
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.43 E-value=6.7e-07 Score=82.71 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++.+|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 35677 9999999999999999999998 9999887665 4445566778998 46899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
|-...+. -.+.++.||+|++|..+..|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875531 124566799999998776664
No 126
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=3.6e-06 Score=82.39 Aligned_cols=256 Identities=16% Similarity=0.150 Sum_probs=154.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc---cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS---GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~---~ADiViLavpd 188 (434)
++||.||+|.||..+.++|.+. |++|+ +++.+....+.+..+|... +.++.|.++ ..-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 5899999999999999999999 99975 5566677788888999764 556666543 46789999998
Q ss_pred hHH-HHHHHHHHhcCCCCcEEEEeccchhh-hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 189 ~a~-~~vl~eI~~~Lk~g~iL~~s~G~~i~-~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..+ ..+++++.|.|.+|.+|++-.--+.+ .++.....-.++++++-+--.+-..-.+ .|.. +-+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~--lMiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYC--LMIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCce--EEec
Confidence 845 57999999999999999877543321 1111111335788887665433222111 2232 3344
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-----------HHHH---HHHHHHHcCCCHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVES---LFRRFTENGMNED 332 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-----------liea---~~~~~v~~Gl~~e 332 (434)
. +.++.+...-+|.++--. |.-- ++ +.=||+++- ++++ .|+.+.+.-++-+
T Consensus 137 G--~~~a~~~~~pif~~lA~g---------e~Gy-l~---~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D 201 (300)
T COG1023 137 G--DEEAVERLEPIFKALAPG---------EDGY-LY---CGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYD 201 (300)
T ss_pred C--cHHHHHHHHHHHHhhCcC---------cCcc-cc---ccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4 578999999999888532 1100 11 112344431 3333 5666666655544
Q ss_pred HH-HHHHHH-------HHHHHHHHHHHHhc-HHHHHHhcCCcchhhhhhh--hhc-cchhHH-HHHHHHHHhccCChhHH
Q 013877 333 LA-YKNTVE-------CITGIISKIISTQG-MLAVYNSFSGEDKKEFEKA--YSA-SYYPCM-EILYECYEDVAAGSEIR 399 (434)
Q Consensus 333 ~A-~~~~~e-------~l~Gli~~li~e~G-~~~m~~~vssp~~~eyg~~--~~~-~~~p~~-~~m~e~~~~v~~G~f~r 399 (434)
.. ..++|. -+..|.++.+.+.+ ++...+.|++-..-.|--. ... .-.|+. ..+.+-+.+-+.-.|++
T Consensus 202 ~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~ 281 (300)
T COG1023 202 LEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAG 281 (300)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhhHHH
Confidence 32 112221 12234555555544 3666666765433222111 111 125644 35556677778888999
Q ss_pred HHHHhcC
Q 013877 400 SVVLAGR 406 (434)
Q Consensus 400 ~~~~~~~ 406 (434)
+++.+-+
T Consensus 282 kvlaalR 288 (300)
T COG1023 282 KVLAALR 288 (300)
T ss_pred HHHHHHH
Confidence 8876544
No 127
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.39 E-value=1.7e-05 Score=78.83 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=124.8
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccch---hh-hhhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~---i~-~~~~~~i~~~~di~VI 233 (434)
+.|+.+ +.|-.|+++++|++|+-+|-.. +.+++++|.+++++|++|+.+.-++ +. .++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 368876 6677899999999999999776 6899999999999999998665443 22 2222 226899999
Q ss_pred EeccCC-ChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhch
Q 013877 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA 312 (434)
Q Consensus 234 ~v~Pn~-pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~ 312 (434)
..||-+ |++. |+ .. ++ ..-++.++.+...+|++..|.. ++. ...|+.+..+-.|-.
T Consensus 199 S~HPaaVPgt~-------Gq-------~~-i~-egyAtEEqI~klveL~~sa~k~-ay~------~PA~lvspV~DMgS~ 255 (342)
T PRK00961 199 SYHPGAVPEMK-------GQ-------VY-IA-EGYADEEAVEKLYEIGKKARGN-AFK------MPANLIGPVCDMCSA 255 (342)
T ss_pred ccCCCCCCCCC-------Cc-------ee-cc-cccCCHHHHHHHHHHHHHhCCC-eee------cchhhcchhhhHHHH
Confidence 999933 2222 32 22 22 4467899999999999999975 111 122345454444444
Q ss_pred HHH----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 313 VHG----IVESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 313 ~~a----liea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+.+ .+..-++..+ -.|-|.+.+-..+.++|.. ++.|+.++|+.+|.+.+.
T Consensus 256 VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLn 310 (342)
T PRK00961 256 VTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcC
Confidence 444 3333444454 4599999999999999985 999999999999998886
No 128
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.35 E-value=2.3e-06 Score=91.02 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=89.3
Q ss_pred chhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC
Q 013877 91 EYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 91 e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~ 170 (434)
+.++|.++ ..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. ..
T Consensus 242 d~~~R~~~-------~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~ 301 (476)
T PTZ00075 242 DGIFRATD-------VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VV 301 (476)
T ss_pred HHHHHhcC-------CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----ec
Confidence 56666442 36889 9999999999999999999987 9998777654333 3345557876 45
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhh-hhcccccCCCCccEEEeccCCChhh
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
+.+++++.+|+|++++.. ..++. +.+..||+|.+|+.++-+.... +.. +....++++..+.|+.....
T Consensus 302 ~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 302 TLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred cHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 789999999999999753 44664 6788899999988554433111 110 11123577888888665444
No 129
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.32 E-value=1.6e-06 Score=81.37 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------CC---CcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---~~~~~~E 174 (434)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|..+- .+ ...+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 6999999999999999999999 99975 666655444333 2332210 00 1356788
Q ss_pred hhccCCEEEEeecch----------HHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 175 a~~~ADiViLavpd~----------a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++++|++|+|+|.. ....+++.|.++++++++|++-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 899999999999832 1346777899999999988765533
No 130
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.32 E-value=2.6e-06 Score=84.01 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|+||||||+|.||..++++|.+. +.++++....+.+. +..+.+...|... +.+.+|++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 01345443344333 3333344445443 568888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776544 344 4455544
No 131
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.25 E-value=2.6e-05 Score=83.24 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=111.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-------cccc-----CC---CcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEE-----NG---TLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~-----~~---~~~~~~Ea 175 (434)
|+||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+...+.+ .... ++ ...+..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 48999999999999999999877 2236775 4444443333322111 0000 00 13456788
Q ss_pred hccCCEEEEeec-ch--------------HHHHHHHHHHhcCCCCcEEEEec----cchhhhhhcccccCCCCcc-EEEe
Q 013877 176 ISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSMGLDFPKNIG-VIAV 235 (434)
Q Consensus 176 ~~~ADiViLavp-d~--------------a~~~vl~eI~~~Lk~g~iL~~s~----G~~i~~~~~~~i~~~~di~-VI~v 235 (434)
+++||+||+||| |. .+..+.++|.+++++|++|++-+ |..- .+......-..+.+ .+..
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~v~~ 154 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQILS 154 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeEEEE
Confidence 999999999996 22 23467778999999999876544 4321 11110000011223 3556
Q ss_pred ccC--CChhhHHHHHhhcccccCCCceEEE-eecCCCC-HHHHHHHHHHHHHhCC-Ccccccchhhhcccccccchhhhh
Q 013877 236 CPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQDVD-GRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGERGILL 310 (434)
Q Consensus 236 ~Pn--~pg~~vr~ly~~G~~~~G~Gv~ali-av~qdvs-g~a~e~a~~la~aiG~-~~~iettf~~E~~~Dlfge~tvL~ 310 (434)
.|- .||..+++.+. .+-++ .-..+.+ .++.+.+.++...+-. ..++.|+. ++.+.-.+ ..
T Consensus 155 ~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~-----~e 219 (473)
T PLN02353 155 NPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL-----AA 219 (473)
T ss_pred CCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH-----HH
Confidence 662 34544433322 44433 2221222 4678888888887742 22333332 22222222 23
Q ss_pred chHH----HHHHHHHHHHHHcCCCHHHHHH
Q 013877 311 GAVH----GIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 311 G~~~----aliea~~~~~v~~Gl~~e~A~~ 336 (434)
++-- +++..+.+.+-+.|++..+...
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3332 3667777777777777766544
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.24 E-value=5.6e-06 Score=82.13 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.+++++++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 34444344445555556421 15688999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
+.++..... +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988776653 4555 4444444
No 133
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.23 E-value=7.2e-06 Score=85.94 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 3678 9999999999999999999988 9998876655433 4566778886 356788999999999988
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~ 215 (434)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44555 4778899999988665443
No 134
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.20 E-value=8e-06 Score=81.97 Aligned_cols=94 Identities=22% Similarity=0.362 Sum_probs=72.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| +|++|||+|.+|.++++.|+.. |.+|++.+|+.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 34578 9999999999999999999988 888888877643 3566667776531 123567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|+..+ -++....|+++.+|++.+
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEc
Confidence 986432 245667889999888664
No 135
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=5.2e-06 Score=83.82 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|+|||.| .||.++|.+|.+. |..|+++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 36889 999999996 9999999999999 99998876531 257788999999999
Q ss_pred eecchHHH-HHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQA-DNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~g~iL~~s 211 (434)
+++..... ..+ +++|++|+++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDv 230 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDV 230 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEe
Confidence 99976543 222 8999988876
No 136
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.15 E-value=1.1e-05 Score=84.91 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3678 9999999999999999999988 9998887665444 3455566876 357889999999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~ 215 (434)
.. ..++. +....||+|.+++.+..+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 64 33554 5778899999988776554
No 137
>PLN02494 adenosylhomocysteinase
Probab=98.10 E-value=1.5e-05 Score=84.86 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=70.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3678 9999999999999999999987 9898776554333 34667788863 46889999999999876
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..... +..+.+..||+|.+|+.+.-+
T Consensus 318 Gt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 65322 124677789999988855443
No 138
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.07 E-value=2.8e-05 Score=66.17 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=61.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
||||||+|.+|..+...+++.. .+.++....+.+. +..+.++..|+.. ..+.+++++ +.|+|++++|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~----~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS----PDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhcC----CCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCCc
Confidence 7999999999999999998761 1456544444444 3344566778874 778999988 789999999999
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++......
T Consensus 74 ~h~~~~~~~l~ 84 (120)
T PF01408_consen 74 SHAEIAKKALE 84 (120)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988876544
No 139
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.07 E-value=1.5e-05 Score=70.88 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=71.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC----------cCCHHhhhccCCEEE
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~Ea~~~ADiVi 183 (434)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777753 3444566677542111 111124577899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+++|-.+..++++.+.+++.+++.| ++--|+..
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~ 106 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGN 106 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSH
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCc
Confidence 9999999999999999999998654 56678763
No 140
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.05 E-value=2.6e-05 Score=81.99 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=72.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+++.++.. |.+|++..+. +.....|...|+. ..+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYE-----VMTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCE-----EccHHHHHcCCCEEEECC
Confidence 4678 9999999999999999999988 9888775544 4457788889986 346678899999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G 213 (434)
... .++. +....|++|.+|+.+..
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCC
Confidence 753 3454 45788999998875543
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.05 E-value=1.7e-05 Score=80.01 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=68.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+.+ ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999986 5 4777788776666677777776421 0224667889999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEEe
Q 013877 187 SDAAQADNYEKIFSCM-KPNSILGLS 211 (434)
Q Consensus 187 pd~a~~~vl~eI~~~L-k~g~iL~~s 211 (434)
|.....++++.+.... ..+.++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEe
Confidence 9776655555543322 245566655
No 142
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.03 E-value=0.00018 Score=72.77 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=73.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC--------cCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~Ea~~~ADiVi 183 (434)
+||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8777766664 22566666677542211 112335566899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
++++-.+..++++.+.|.+++.+.| .+--|..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g 105 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLG 105 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCc
Confidence 9999999999999999999999855 4566775
No 143
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.99 E-value=0.0006 Score=69.12 Aligned_cols=206 Identities=13% Similarity=0.061 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCch------h-----------HHHHHHcCccccC-------C--CcC--CHH
Q 013877 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEEN-------G--TLG--DIY 173 (434)
Q Consensus 122 mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~------s-----------~~~A~~~G~~~~~-------~--~~~--~~~ 173 (434)
||..+|..+..+ |++|++.+...+. . ++.+.+.|..... . ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999888766421 1 1122223322100 0 011 256
Q ss_pred hhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhh
Q 013877 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~ 250 (434)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-.++.+|+--|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 8899999999999977775 58889999999999884 556666666654 222223789999977776631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCC
Q 013877 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (434)
Q Consensus 251 G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~ 330 (434)
.-- +..+...+.+.++.+..++..+|... +.. .+. +.+ ++......++.-++..+.+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~-----~Gf-i~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKVP-VVC---GPS-----PGY-IVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCC-----CCc-chHHHHHHHHHHHHHHHHhCCCC
Confidence 111 33456677899999999999999652 111 111 111 33344444555555666777899
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 013877 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (434)
Q Consensus 331 ~e~A~~~~~e~l------~Gli~~li~e~G~~~m~~~ 361 (434)
+++......... .| .-+++-..|++.+++.
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~ 243 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYA 243 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHH
Confidence 988776443221 24 3555666676554443
No 144
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=2.3e-05 Score=81.29 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=121.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC----ccccCCCcCCHHhh---hccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~Ea---~~~ADiViL 184 (434)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-++.+ +++ ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4699999999999999999999 9999999999887766666554 222 4566664 567788999
Q ss_pred eecchHH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 185 avpd~a~-~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
.|+-... ..+++++.|+|.+|.+|++..--. +....+ .-.+++.||..--.+ |.|.--.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9997543 468889999999999999875432 222211 224567777533322 11000011
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-----------H---HHHHHHHHHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-----------G---IVESLFRRFT 325 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-----------a---liea~~~~~v 325 (434)
|+ |-|.. +.++.+.+.-++..|-+.. ..++-.+..|+. |.+| + +|--.|+.+.
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk~------~g~pCc~~iG~~----GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk 205 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAKV------DGEPCCTWIGPD----GAGHFVKMVHNGIEYGDMQLIAEAYDILK 205 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhhc------CCCCceeeECCC----CCCceeeeeecCchHHHHHHHHHHHHHHH
Confidence 22 33343 5689999999999887641 123333344443 2222 1 5555777777
Q ss_pred H-cCCCHHHHH
Q 013877 326 E-NGMNEDLAY 335 (434)
Q Consensus 326 ~-~Gl~~e~A~ 335 (434)
. .|++.++--
T Consensus 206 ~~lgls~~ei~ 216 (473)
T COG0362 206 DGLGLSAEEIA 216 (473)
T ss_pred HhcCCCHHHHH
Confidence 6 799887643
No 145
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.96 E-value=3.1e-05 Score=66.99 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.4
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHHHcC-ccccCCCcCCHHhh-hccCCEEEEeecc
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea-~~~ADiViLavpd 188 (434)
||+||| .|.+|..++..|.+. .++++... .++.++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 489999999999884 15554433 222111111122222 11000000111111 2589999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887767778999999998875
No 146
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=97.95 E-value=0.00048 Score=67.08 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=124.7
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecc-hHHHHHHHHHHhcCCCCcEEEEeccchhh-h---hhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-H---LQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd-~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-~---~~~~~i~~~~di~VI 233 (434)
+.|+.+ ..|-.|++++||+||.=+|- ..|.++++++.+.+++|++++.+.-+... + ++. .=+++.+|-
T Consensus 124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed---~gredlnvt 196 (343)
T COG4074 124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFED---MGREDLNVT 196 (343)
T ss_pred HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHH---hCcccccee
Confidence 467765 56788999999999999884 45679999999999999999887655322 1 122 124789999
Q ss_pred EeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchH
Q 013877 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313 (434)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~ 313 (434)
..||-+ .+.+ .|-.+ |+ +.-++.++.+..-+|..-.-+. .+.. ...|.|-.+-.|..+
T Consensus 197 syhpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk~------pa~llgpvcdmcsav 254 (343)
T COG4074 197 SYHPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFKV------PAYLLGPVCDMCSAV 254 (343)
T ss_pred ccCCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-cccC------cHHhhchHHHHHHHH
Confidence 999944 3332 23333 44 6677888877766665433221 2222 223778888888888
Q ss_pred HHHHHHHH---HHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 314 HGIVESLF---RRFT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 314 ~aliea~~---~~~v--~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
.+++-++. +-++ -.|-|.+-|-..+.|.+.+ |++++.+.|++.|-+.+.
T Consensus 255 taivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeeald 308 (343)
T COG4074 255 TAIVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcC
Confidence 88666543 3333 3599999999999999996 999999999999998886
No 147
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=2.2e-05 Score=79.28 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---C--ccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..+++.+.... ...+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCAT 197 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEee
Confidence 89999999999999998776520 0347888888766656655543 4 332 467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|.. ..++.. ..++||++|.
T Consensus 198 ~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 198 LST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred CCC--CCEecH--HHcCCCCEEE
Confidence 865 233321 4578898543
No 148
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=4.2e-05 Score=77.15 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=59.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|+||| .|.||.++|.+|.+. |+.|.++..+. .+++|++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999998 99998874221 1356788999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... ++. ++++|++|+++
T Consensus 209 vg~~~~v---~~~--~lk~GavVIDv 229 (296)
T PRK14188 209 VGRPEMV---KGD--WIKPGATVIDV 229 (296)
T ss_pred cCChhhc---chh--eecCCCEEEEc
Confidence 9986642 221 28999988876
No 149
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.83 E-value=7.3e-05 Score=75.08 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=70.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCcccc-CCC--c----CCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~--~----~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||.-+|..|.++ |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 6899999999999999999998 9988877775332 33332 3354321 111 0 01112235689999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+++|-....++++.+.|++.++++| .+-.|+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 9999998899999999999998865 56678864
No 150
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.83 E-value=9.1e-05 Score=72.81 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=89.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++||+|||+ |.||..+++.+.+. .+++++...+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 368999998 99999999988764 15666554544332222222334432 467888888899999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhcccccC-CCceEEEee
Q 013877 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-AGINSSFAV 265 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~G-~Gv~aliav 265 (434)
...++...... .|. +|+-..|++....+. .....+.+.++ ++||..-...- .+-+.--...| +-+- ++-.
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~~~~-l~~aa~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l~~~d~e-i~E~ 145 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQLAE-LEEAAKKIPVV-IAPNFSIGVNLLMKLAEKAAKYLGDYDIE-IIEA 145 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhcCCCEE-EECcchHHHHHHHHHHHHHHHhcCCCCEE-EEEc
Confidence 98777765443 444 444456877543322 11122445544 56655433210 00000000011 1111 2233
Q ss_pred cC----C-CCHHHHHHHHHHHHHhC
Q 013877 266 HQ----D-VDGRATNVALGWSVALG 285 (434)
Q Consensus 266 ~q----d-vsg~a~e~a~~la~aiG 285 (434)
|. | .||.++.++..+....+
T Consensus 146 HH~~K~DaPSGTA~~l~~~i~~~~~ 170 (257)
T PRK00048 146 HHRHKVDAPSGTALKLAEAIAEARG 170 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 33 2 37788888777777665
No 151
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.80 E-value=4.9e-05 Score=77.26 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
-+++||||+|.||..+++.|.... ...+|.+++|..++..+.+. +.|+.. ..+.+.+|++++||+|++|||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 378999999999999998887641 12377777776555444333 345321 115789999999999999998
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
... .++. ...++||+.|.-...+
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCC
Confidence 632 2222 2346899887655443
No 152
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.77 E-value=6.6e-05 Score=71.29 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiVi 183 (434)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 356889 9999999999999999999998 9998866554333333333435442 23445543 799998
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
.|..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6654
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.76 E-value=6.2e-05 Score=66.91 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcc-ccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT-EENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~-~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+++ +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+-. ..--...+..+.+.++|+||
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 46788 9999999999999999999998 87 4889999877777777665211 00001445667889999999
Q ss_pred EeecchHH
Q 013877 184 LLISDAAQ 191 (434)
Q Consensus 184 Lavpd~a~ 191 (434)
.++|....
T Consensus 81 ~aT~~~~~ 88 (135)
T PF01488_consen 81 NATPSGMP 88 (135)
T ss_dssp E-SSTTST
T ss_pred EecCCCCc
Confidence 99997655
No 154
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.71 E-value=5.9e-05 Score=79.22 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+.| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.|
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3678 9999999999999999999987 87 788888876665667777664210 023566788999999999
Q ss_pred ecchH
Q 013877 186 ISDAA 190 (434)
Q Consensus 186 vpd~a 190 (434)
|+...
T Consensus 250 T~s~~ 254 (423)
T PRK00045 250 TGAPH 254 (423)
T ss_pred CCCCC
Confidence 98543
No 155
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.00053 Score=71.53 Aligned_cols=151 Identities=20% Similarity=0.271 Sum_probs=93.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-------------------HHHHHHcCccccCCCcCCH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~ 172 (434)
.+|+|||+|-+|.++|..+.++ |++| +|.+.+++. .+.+.+.|.-. .+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7999999999999999999999 9987 476655422 23455555321 13455
Q ss_pred HhhhccCCEEEEeecchHH----------HHHHHHHHhcCCCCcEEEEe----ccch---hhh-hhc-ccccCCCCccEE
Q 013877 173 YETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLS----HGFL---LGH-LQS-MGLDFPKNIGVI 233 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~----------~~vl~eI~~~Lk~g~iL~~s----~G~~---i~~-~~~-~~i~~~~di~VI 233 (434)
+++ +.||++++|||...- ....+.|++.|++|++|++= .|.+ +.. ++. .++.++.|+. +
T Consensus 80 ~~l-~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~-l 157 (436)
T COG0677 80 EEL-KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY-L 157 (436)
T ss_pred hhc-ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-E
Confidence 554 589999999984321 12344699999999987643 3432 112 222 4566665543 3
Q ss_pred Eecc--CCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 234 ~v~P--n~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.-+| -.||...+++-. .+-+|. .++++..+.+.+|-..+=.
T Consensus 158 aysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~ 200 (436)
T COG0677 158 AYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVE 200 (436)
T ss_pred eeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheE
Confidence 3445 345665443332 333222 4567777777777766643
No 156
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.69 E-value=0.0028 Score=65.04 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=71.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCcEEEEEecCC---chhHHHHHH-----------cCcccc-C-CCcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~-~~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~-~-~~~~~~~E 174 (434)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+.. .+.....+- -|+... + -.+.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 78999999999999999988762221 1122455444321 110111110 011100 0 01568899
Q ss_pred hhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchh
Q 013877 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i 216 (434)
++++||+++..+|.+-...++++|..+++++.. |+.+.||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999985 678888864
No 157
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00049 Score=67.29 Aligned_cols=213 Identities=12% Similarity=0.045 Sum_probs=132.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
..++|||.|..|.+.....-+- ++. .+ -..+++.+.|+. .+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CS-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--eh-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999954433222 222 11 112344444443 3333 2345555566788898899
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhh-hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|..+.++.... .-+||++|.+++|++-. .+.. .-+.+.--..+||+.......+.-.+- .+--..|. .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 88666665433 34799999999999732 2211 001234446799999887766666543 23222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gl 345 (434)
. +.....+++.|+.-+|+....- .|..-.+||..... ++.+..+.--..+....+|+++-++.-+.+--+.|
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~V----~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g- 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFCV----REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG- 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCceee----chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-
Confidence 3 3345677899999999974221 24445589888765 55555666667788899999998888875555666
Q ss_pred HHHHHHHhcHH
Q 013877 346 ISKIISTQGML 356 (434)
Q Consensus 346 i~~li~e~G~~ 356 (434)
..+-..+.|..
T Consensus 219 ~~~n~~qrg~a 229 (289)
T COG5495 219 ALENTLQRGQA 229 (289)
T ss_pred HHHHHHHhhhh
Confidence 55666666653
No 158
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.00014 Score=73.13 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=59.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|+|||. |.||.++|..|.+. |..|+++.. + +.++++.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 5889 99999999 99999999999998 998877621 1 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.....+ . .++++|++++++
T Consensus 209 vg~~~~v~---~--~~ik~GavVIDv 229 (284)
T PRK14179 209 IGRGHFVT---K--EFVKEGAVVIDV 229 (284)
T ss_pred cCccccCC---H--HHccCCcEEEEe
Confidence 99766531 1 138999988876
No 159
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.66 E-value=0.00028 Score=69.71 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=56.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
|+||||||+|.||..+++.|.+. .++++......+....+.... .+... +.+++++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999865 034443333222211111121 23332 45777774569999999999
Q ss_pred hHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
..+.++...+. +.|+ +++.+.|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877766553 4454 4444444
No 160
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.64 E-value=0.00016 Score=63.53 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHH-----HcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|+|+ |.||..+++.+.+. .++++..+.++..... +... ..|+.. ..+.+++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 48999999 99999999999984 1777655554432100 0111 223332 46789999999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCc-EEEEeccchh
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i 216 (434)
|-.+-|....+.++....+ |. +|+=+.|++-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999888877777665444 43 5566789874
No 161
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.58 E-value=0.00044 Score=67.56 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=100.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccc-c-------C-----
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTE-E-------N----- 166 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~-~-------~----- 166 (434)
++.|+|||.|.||..+|+--..+ |++|++.+++ .+...+|.+ .+... + +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999998 9998877654 333333332 11110 0 0
Q ss_pred -CCcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 167 -~~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
.+..++.+++++||+||=++-...- .+++++|-..-++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1245678899999999866553333 246666666667777764 556677665543 222334667777666666
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
++. +.+ +.-+.+.|.+-......+..++|.+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 642 222 1236678889899899999999975
No 162
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.56 E-value=0.00019 Score=72.26 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|+|||+|.||..++..+... .++ +|.+++|..++..+.+.+. ++.. .+.+.+++++++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEEEccC
Confidence 8999999999999999999753 044 6778888766655555554 3322 03578899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
... .++. ..++||+.|.-...+
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAF 219 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCC
Confidence 654 3333 247899877655444
No 163
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.54 E-value=0.00015 Score=76.21 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+...|.... ...+..+++.++|+||.|
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4678 9999999999999999999988 8 5788888876655566666654210 123567888999999999
Q ss_pred ecchHH
Q 013877 186 ISDAAQ 191 (434)
Q Consensus 186 vpd~a~ 191 (434)
++....
T Consensus 248 T~s~~~ 253 (417)
T TIGR01035 248 TGAPHP 253 (417)
T ss_pred CCCCCc
Confidence 975443
No 164
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.53 E-value=0.00063 Score=67.33 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCchh--HHHHHH-----cCccccCCCcCCHHhhhccCCE
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~~~s--~~~A~~-----~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
|.||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999999864 1677655454 32221 122222 23332 4577777567899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCC--CccEEEeccCCChhh
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPK--NIGVIAVCPKGMGPS 243 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~--di~VI~v~Pn~pg~~ 243 (434)
|+.++||..+.+++..... .|. +|+-..|++....+. ....-+ ++. +.+.||++--+
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~-l~~aA~~~g~~-v~~a~NfSlGv 131 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQE-LADLAEKAGIA-AVIAPNFSIGV 131 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH-HHHHHhcCCcc-EEEECcccHHH
Confidence 9999999998887766543 343 555556886543322 011111 233 44777776544
No 165
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.45 E-value=0.00093 Score=66.78 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--cCcccc--CCC---cCCHHhhhccCCEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NGT---LGDIYETISGSDLV 182 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~~~---~~~~~Ea~~~ADiV 182 (434)
|+||+|||.|+||..+|..+... |+ +|++.+...+.....+.+ ...... +.. ..+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999999877 65 777766543332222211 111100 000 2344 568999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 166
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00039 Score=71.21 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+. +.+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 244 67788887655554443 233210 12367889999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
||... .++. ...|+||+.|.-+.+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99877 3332 2457899988766554
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=97.45 E-value=0.00024 Score=76.85 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+...+ ....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999988 86 68888887666666665542 211000134567889999999999
Q ss_pred ecchH---HHHHHHHHH
Q 013877 186 ISDAA---QADNYEKIF 199 (434)
Q Consensus 186 vpd~a---~~~vl~eI~ 199 (434)
|+-.. ..+.++.+.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 86322 245555543
No 168
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.42 E-value=0.00064 Score=70.43 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=64.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-C-CCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ .+|.|||+|.+|...++.++.. |.+|++.++...+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 98888777654443333333343110 0 0012356788999999999
Q ss_pred ecc--hHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd--~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2222333 45556789999888664
No 169
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00038 Score=70.62 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=63.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.||
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 88999999999999998876431 44 677777765555544442 24321 01467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|.. + .++. ..+++|+.|.-...+
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCC
Confidence 965 2 3443 567999987755444
No 170
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.41 E-value=0.00031 Score=70.81 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-++++|||+|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ..+.+.+|++++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 144 778888876655554443 24321 0156899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+... .+++ ...++||+.|.-...+
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCC
Confidence 99543 3332 2357888776654443
No 171
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.40 E-value=0.00034 Score=72.06 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+-++++|||+|.|+..+++.+..-. .+ +|.++.|..++..+.+.+. |+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 3378999999999999998887641 34 7888888755544433322 3321 0156899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+......+++. ..++||+.|.-...+
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGD 227 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCC
Confidence 975432233431 357899877655444
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.37 E-value=0.00046 Score=70.54 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156765434443211 1222234332 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEE
Q 013877 192 ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~ 209 (434)
.+.... .|+.|.-++
T Consensus 74 ~~~~~~---~L~aG~NVV 88 (324)
T TIGR01921 74 IPEQAP---YFAQFANTV 88 (324)
T ss_pred HHHHHH---HHHcCCCEE
Confidence 544433 344444333
No 173
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.36 E-value=0.0011 Score=64.57 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.+|||||||.+|..+..-+++-- -+++. .++++..++....+...+-.. +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~----~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR----VDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC----cceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 47999999999999998887630 12443 444444344333333333332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~ 214 (434)
..+...++. +.|. +|+.+-|.
T Consensus 73 v~e~~~~~L---~~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKIL---KAGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHH---hcCCCEEEEechh
Confidence 998887764 3443 56666664
No 174
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.35 E-value=0.00043 Score=64.58 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----Ccccc--C-CCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE--N-GTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~--~-~~~~~~~Ea~~~ 178 (434)
.+++ +++.|+|. |.+|.++++.|.+. |.+|++..|+..+..+.+... +.... + ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888887777644433333322 11100 0 001223478889
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+||.++|..... ........+++.++++.
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADV 128 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEc
Confidence 99999999977751 11222234556677765
No 175
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.32 E-value=0.0006 Score=59.25 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEE-EecCC--chhHHHHHH--cCccccCCCcC-CHHhhhccCCEEEEe
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~~~~~~-~~~Ea~~~ADiViLa 185 (434)
||+||| .|.+|..+.+.|.+. ..++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1344333 33332 122322211 01110 0011 123456899999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888776 4578788887764
No 176
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.30 E-value=0.00039 Score=73.23 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+.| ++|.|||.|-||.+++.+|.+. |. ++++.+|+..+....+.+.+ ... -...+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 34677 9999999999999999999988 86 78888998777777777654 221 00234567889999999
Q ss_pred Eeecch
Q 013877 184 LLISDA 189 (434)
Q Consensus 184 Lavpd~ 189 (434)
.||+..
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999853
No 177
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.30 E-value=0.0011 Score=67.90 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHHcCccc-----------cCC---CcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTE-----------ENG---TLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~-----------~~~---~~~~~~Ea 175 (434)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..++..|+.. .+. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998864 1567655555433222 2233334320 000 02356677
Q ss_pred hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..++|+|+.|+|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777643 4457778877773
No 178
>PRK06046 alanine dehydrogenase; Validated
Probab=97.28 E-value=0.00061 Score=69.25 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..+++++... .++ .|.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 145 455566654443333333 24321 01457888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|... .+++ ...+++|+.|.-...+
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3332 2346899887655443
No 179
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.28 E-value=0.0015 Score=65.88 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH---cCcccc-CC---CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEE-NG---TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~-~~---~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||..+|..|... |+ +|++.+.........+.+ .+.... .. ...+.++ +++||+||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEE
Confidence 6899999999999999999887 76 776665533221112110 010000 00 1246665 78999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.+
T Consensus 75 itag 78 (305)
T TIGR01763 75 ITAG 78 (305)
T ss_pred EcCC
Confidence 9988
No 180
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.26 E-value=0.00093 Score=66.62 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=61.3
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--cEE-EEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEe
Q 013877 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG-~A~A~nLrds~~~~~~G--~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLa 185 (434)
.||||||+|.++ ..++..+++. + +.+ .+.++..++..+.+++.|+.. ...+.++++++ -|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999665 5688888876 4 233 333455556677888888741 16789998886 5999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++... .|+.|+-|.
T Consensus 75 tp~~~H~e~~~~---AL~aGkhVl 95 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHVL 95 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEEE
Confidence 999999987743 345566443
No 181
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.00058 Score=68.29 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccc---cCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~Ea~~~ADiV 182 (434)
.+++ ++|.|||.|-+|.+++..|.+. |. +|.+.+|...+..+.+...+-.. .-....+..+.++++|+|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEE
Confidence 3567 8999999999999999999988 87 78888887666666655432100 000022345577889999
Q ss_pred EEeecchH
Q 013877 183 LLLISDAA 190 (434)
Q Consensus 183 iLavpd~a 190 (434)
|.+||...
T Consensus 197 InaTp~Gm 204 (284)
T PRK12549 197 VHATPTGM 204 (284)
T ss_pred EECCcCCC
Confidence 99999654
No 182
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.20 E-value=0.00064 Score=71.52 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=61.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|+-++..+.|.+.|... -+..+..+.+.++|+||.+
T Consensus 175 ~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISS 245 (414)
T ss_pred cccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEe
Confidence 4788 9999999999999999999999 85 88899999888899999998542 1244667889999999999
Q ss_pred ec
Q 013877 186 IS 187 (434)
Q Consensus 186 vp 187 (434)
|.
T Consensus 246 Ts 247 (414)
T COG0373 246 TS 247 (414)
T ss_pred cC
Confidence 86
No 183
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.19 E-value=0.00083 Score=68.27 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+-++++|||+|.||..+++.+..- +.+ +|.|++|..++..+.+. +.|+... .+.+.++++++||+|+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 348999999999999999998764 133 78888887665544333 2244321 146789999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+... .+++ ...++||+.|.-...+
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCC
Confidence 98543 3442 2357899887655444
No 184
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.17 E-value=0.0031 Score=63.49 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch--hHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~--s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.+|||||+|++|.-++.++.+. .++++....+.+.. .++.+++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 14555433333332 346777888753 1346777775 5788999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+..+.+...... +.|+.+++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 999988776543 4576665443
No 185
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.17 E-value=0.00053 Score=67.60 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---CccccCCCcCCHHh-hhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~E-a~~~ADiVi 183 (434)
.++ +++.|||.|.+|.+++..|.+. |.+|.+.+|...+..+.+... |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999988 888888888755544444432 2111 122322 345799999
Q ss_pred EeecchHHHHHHH-HH-HhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~-eI-~~~Lk~g~iL~~s 211 (434)
.++|.....++-+ .+ ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754321100 00 2335677666654
No 186
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.13 E-value=0.0029 Score=64.22 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhc-----cCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~-----~ADiViL 184 (434)
.||||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888865 1455544333333 3346678888753 1356788874 5899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|...+.+...... +.|+.+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999999988876654 45777766544
No 187
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.12 E-value=0.0011 Score=67.53 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++++|||+|.||..+++.|... .++ +|.|++|..++..+.+.+. |+.. ..+.+.++++++||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 154 6778888766655555543 4422 01457889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|... .++. ...+++|+.|...
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEee
Confidence 9643 2332 1347888876633
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.10 E-value=0.0014 Score=60.97 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=57.0
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..|+| ++|.|||.|-| |..++++|... |.+|.+.+|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 46788 99999999987 88899999998 88887777641 245678999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++-.. ++.. ..++++.+|++.
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDl 115 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDV 115 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEc
Confidence 999754 2321 135677777755
No 189
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.00071 Score=69.72 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=112.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-H-cCccccCCCcCCHHhhh---ccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~-~G~~~~~~~~~~~~Ea~---~~ADiViLav 186 (434)
..||.||++.||+.+++|+.+. |+.|.+++|..++.-+... + .|...- ...+++|.+ ++--.||+++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998775433222 1 232210 135677764 5678999999
Q ss_pred cchHHHH-HHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 187 SDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 187 pd~a~~~-vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+....++ +++++.|+|.+|.+|++-.--. ....++ .-.+++=+|..--.+ |.|..-.| |+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G-PS 143 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG-PS 143 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-Cc
Confidence 9877764 6678999999999988653211 111110 001222233211111 11000011 22
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhh--hhchHH--------HHHHHHHHHHHH-cCCC
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVH--------GIVESLFRRFTE-NGMN 330 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tv--L~G~~~--------aliea~~~~~v~-~Gl~ 330 (434)
+-|.. +.+++..++.++..|-.. +-. -|+--+..|+.+. ..=++| .+|--.|+.+.. .|++
T Consensus 144 -lMpGg--~~~Awp~ik~ifq~iaak-v~~----~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls 215 (487)
T KOG2653|consen 144 -LMPGG--SKEAWPHIKDIFQKIAAK-VSD----GEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLS 215 (487)
T ss_pred -cCCCC--ChHHHHHHHHHHHHHHHH-hcC----CCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCc
Confidence 22333 567888888888887321 111 1444455555421 011222 166668888887 7888
Q ss_pred HHHHH
Q 013877 331 EDLAY 335 (434)
Q Consensus 331 ~e~A~ 335 (434)
.++--
T Consensus 216 ~~eia 220 (487)
T KOG2653|consen 216 NDEIA 220 (487)
T ss_pred HHHHH
Confidence 77643
No 190
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.08 E-value=0.0012 Score=68.11 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=73.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-+.| |++.|.|||-.|...|+.++.. |-+|+|..-.+-+ .-+|.-+||. +..++|+++.+|++|.+|
T Consensus 206 liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~T 272 (420)
T COG0499 206 LLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTAT 272 (420)
T ss_pred eecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEcc
Confidence 4667 9999999999999999999987 8899887554333 4456668998 578999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
-...+.. .+.+..||+|++|.-+.-|.
T Consensus 273 GnkdVi~--~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 273 GNKDVIR--KEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred CCcCccC--HHHHHhccCCeEEecccccc
Confidence 8755432 14566789999888665565
No 191
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.03 E-value=0.003 Score=61.24 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----chh-------HHHHHHcCccccCCCcCCH
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~~ 172 (434)
.+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+.
T Consensus 22 ~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~l 91 (226)
T cd05311 22 KIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGTL 91 (226)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCCH
Confidence 5778 9999999999999999999988 86 477788762 221 23444432211 01367
Q ss_pred HhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 78889999999999865543 233344556666553
No 192
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.03 E-value=0.0031 Score=63.41 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=46.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +... .....+. +.+++||+|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~~~~~-~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIKAGDY-SDCKDADIV 72 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEEcCCH-HHhCCCCEE
Confidence 5899999999999999999988 74 6777776555443333321 1100 0012333 457899999
Q ss_pred EEeecc
Q 013877 183 LLLISD 188 (434)
Q Consensus 183 iLavpd 188 (434)
|+++..
T Consensus 73 Iitag~ 78 (306)
T cd05291 73 VITAGA 78 (306)
T ss_pred EEccCC
Confidence 999875
No 193
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.01 E-value=0.0014 Score=54.87 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=56.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd~ 189 (434)
.+|.|+|+|+.|.+++.++.+. . |+.+....+.+++..-. .-.|+.. ..++.++.+. .|+-++++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 6899999999999999777655 2 54443333333321111 1125543 3377777766 99999999999
Q ss_pred HHHHHHHHHHh-cCCCCcEEEEecc
Q 013877 190 AQADNYEKIFS-CMKPNSILGLSHG 213 (434)
Q Consensus 190 a~~~vl~eI~~-~Lk~g~iL~~s~G 213 (434)
...++..++.. .+|. ++.++.|
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~~ 96 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTPG 96 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESSS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCCC
Confidence 98888877543 3432 5556543
No 194
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.01 E-value=0.0012 Score=66.97 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++++|||+|.||..+++.+..-. ++ +|.|+.|+.++..+.+.. .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999998751 44 777888875444333332 23332 12568999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|......+++ ...++||+.|.-....
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCC
Confidence 9665212232 2357888877654433
No 195
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0023 Score=67.02 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcC---c--cccCC-CcCCHHhhhccCCEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENG-TLGDIYETISGSDLVL 183 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~~-~~~~~~Ea~~~ADiVi 183 (434)
|++|.|||+|.+|.+.|..|.++ | .+|.+..|+.++ .+++.+.. + ...|- ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 58999999999999999999988 6 799999887554 34443332 1 11010 0123557899999999
Q ss_pred EeecchHHHHHHH
Q 013877 184 LLISDAAQADNYE 196 (434)
Q Consensus 184 Lavpd~a~~~vl~ 196 (434)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.97 E-value=0.0035 Score=54.60 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.3
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG----~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 9887544333211 145553 5678874478999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+....++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987654 344455555433
No 197
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.97 E-value=0.0047 Score=61.61 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViLavpd~a 190 (434)
+||||||||.||..++..|.+.. ..++++...+++.....+.. ...... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999986530 00245444444433222222 122332 6788885 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~ 214 (434)
..+....+. +.|. +++.+-|.
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888777654 3344 55566564
No 198
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.97 E-value=0.0037 Score=64.13 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-cccc-CCCcCCHH-hhhccCCEEEEee
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~-Ea~~~ADiViLav 186 (434)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999997 99999999999865 14565443433222112222222 1100 00122222 2457899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+..+.++..++.. .|..|++.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888877643 5787777665
No 199
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.94 E-value=0.0018 Score=65.82 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||.+++..+.... ++ +|.+++|..++..+.+.+. |+.. ....+.++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 6777888766555555432 4431 11467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33322 23678876643
No 200
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.92 E-value=0.0097 Score=50.37 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=60.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeecch
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavpd~ 189 (434)
|-|+|+|.+|..+++.|++. +.+|++.. .+....+.+++.|+..-.+...+.+ .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87776554 4455678888888654323233332 2367899999999987
Q ss_pred HHHHHHHH-HHhcCCCCcEEEEecc
Q 013877 190 AQADNYEK-IFSCMKPNSILGLSHG 213 (434)
Q Consensus 190 a~~~vl~e-I~~~Lk~g~iL~~s~G 213 (434)
...-.+-. +........++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 66533333 3333333445555543
No 201
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.91 E-value=0.0024 Score=66.58 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc-----Cc---cccCCCcCCHHhhhccC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~~~~~~~~~Ea~~~A 179 (434)
++-++++|||+|.|+..+++.+..-. ..+ +|.|+.|..++..+.+.+. |+ .+ +.+.+|++++|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~A 224 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGS 224 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCC
Confidence 34489999999999999999987641 024 6778888765544444322 32 22 57899999999
Q ss_pred CEEEEeecchHH----HHHHHHHHhcCCCCcEEE
Q 013877 180 DLVLLLISDAAQ----ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 180 DiViLavpd~a~----~~vl~eI~~~Lk~g~iL~ 209 (434)
|+|+.||+.... ..+++ ...++||+.|.
T Consensus 225 DIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 225 DIVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred CEEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 999999974321 12332 23578998765
No 202
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.91 E-value=0.0021 Score=68.77 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+++ ++++|||.|.+|.+++..|.+. |.+|++.+|...+..+.+...+.... ...+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4567 8999999999999999999998 98888887765444444444332210 011222 256899999999
Q ss_pred cchH
Q 013877 187 SDAA 190 (434)
Q Consensus 187 pd~a 190 (434)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 203
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.90 E-value=0.0047 Score=62.72 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=44.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--c-----CccccCCCcCCHHhhhccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----GFTEENGTLGDIYETISGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~-----G~~~~~~~~~~~~Ea~~~A 179 (434)
.+. +||+|||.|++|.+++..+... |+ ++++.+...+.....+.+ + +....-....+.+ ++++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 455 8999999999999999998887 74 665555543322222221 1 1100000023555 78999
Q ss_pred CEEEEee
Q 013877 180 DLVLLLI 186 (434)
Q Consensus 180 DiViLav 186 (434)
|+|+++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999998
No 204
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0054 Score=59.35 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCC---HHhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~Ea-~~~ADiViLav 186 (434)
|+|.|||+|..|.++|+.|.+. |++|++.++..++..+.+. +.+...-.+...+ +.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9998776665444333222 2333211111122 4455 78899999999
Q ss_pred cchHHHHHHHHHHh
Q 013877 187 SDAAQADNYEKIFS 200 (434)
Q Consensus 187 pd~a~~~vl~eI~~ 200 (434)
....+.-++-.+..
T Consensus 75 ~~d~~N~i~~~la~ 88 (225)
T COG0569 75 GNDEVNSVLALLAL 88 (225)
T ss_pred CCCHHHHHHHHHHH
Confidence 99888877766543
No 205
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.87 E-value=0.0022 Score=63.57 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCc-CCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~Ea~~~ADiViL 184 (434)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|+..+..+.+...+... .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 9999999999999999999988 8 488888887655555554433110 0001 133467788999999
Q ss_pred eecchHH
Q 013877 185 LISDAAQ 191 (434)
Q Consensus 185 avpd~a~ 191 (434)
++|....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 206
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.87 E-value=0.0028 Score=63.81 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.|+| ++|.|||.|. +|..+|.-|.+. |..|++..++. .+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 36899 9999999988 999999999988 88888776531 246788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-... +.. .++++|++|++.+
T Consensus 208 Avg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 9986432 322 3478998888663
No 207
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0049 Score=64.52 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------CC---CcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---~~~~~~E 174 (434)
|||+|||.|-.|...+..|.+. |++|+ +.+.++...+. ...|..+- ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv-~vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVV-CVDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEE-EEeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899999999999999999998 99875 55554432222 22232111 11 1467889
Q ss_pred hhccCCEEEEeecchH---------H-HHHHHHHHhcCCCCcEEE
Q 013877 175 TISGSDLVLLLISDAA---------Q-ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 175 a~~~ADiViLavpd~a---------~-~~vl~eI~~~Lk~g~iL~ 209 (434)
+++++|++|||||... + ..+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999999998322 2 246668999997766654
No 208
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0026 Score=64.04 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.. |..++.-|... |..|++.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 5789 99999999988 99999999988 8888764321 24677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++-.. ++.. .++|+|++|+++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDV 229 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDV 229 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEc
Confidence 99433 3332 568999988765
No 209
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.82 E-value=0.026 Score=55.10 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=62.0
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--C--------CcCCHHhhhccCCEEEEeecchH
Q 013877 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 121 ~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||..+|..|.++ |++|.+..|. +..+..++.|+...+ + ...++++ ....|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3789999999998 9998887774 334445556753211 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-Eeccch
Q 013877 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~-~s~G~~ 215 (434)
..++++.+.+++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999999887654 556775
No 210
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.81 E-value=0.0054 Score=55.14 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=45.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ccccC-CCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~~~~~~~Ea~~~ADiVi 183 (434)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+.- +...+ ....+..+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEE
Confidence 58999999 99999999999988 65 66655555333333333210 10000 00124567889999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 75 itag 78 (141)
T PF00056_consen 75 ITAG 78 (141)
T ss_dssp ETTS
T ss_pred Eecc
Confidence 9863
No 211
>PRK11579 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0073 Score=61.38 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=51.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.+|. .++..+... .+++++...+.+.+. .+... +... ..+.+|+++ +-|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466777654 156665444443321 12223 2222 568899986 5799999999
Q ss_pred chHHHHHHHHH
Q 013877 188 DAAQADNYEKI 198 (434)
Q Consensus 188 d~a~~~vl~eI 198 (434)
+..+.++....
T Consensus 74 ~~~H~~~~~~a 84 (346)
T PRK11579 74 NDTHFPLAKAA 84 (346)
T ss_pred cHHHHHHHHHH
Confidence 99998877654
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.80 E-value=0.0065 Score=63.33 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=53.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCC---HHhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~Ea-~~~ADiViLav 186 (434)
|+|.|||+|.+|.++++.|++. |++|++..+.. ...+.+++ .|+....+...+ .+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 99887665543 33444443 443221111112 3445 78999999999
Q ss_pred cchHHHHHHHH
Q 013877 187 SDAAQADNYEK 197 (434)
Q Consensus 187 pd~a~~~vl~e 197 (434)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98776554433
No 213
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.78 E-value=0.0068 Score=61.76 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchh----HHHHHHc---C--ccccCCCcCCHHhhhcc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARAA---G--FTEENGTLGDIYETISG 178 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s----~~~A~~~---G--~~~~~~~~~~~~Ea~~~ 178 (434)
+. +||+|||.|+||.++|..+... |+ ++++.+...+.. .+..... + .... ...+. +++++
T Consensus 5 ~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~ 74 (321)
T PTZ00082 5 KR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAG 74 (321)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCC
Confidence 44 7999999999999999998877 76 755555443321 2111111 1 1110 12455 57899
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+||++.
T Consensus 75 aDiVI~ta 82 (321)
T PTZ00082 75 SDVVIVTA 82 (321)
T ss_pred CCEEEECC
Confidence 99999966
No 214
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.78 E-value=0.0057 Score=50.09 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+++ ++++|+|+|.||.+++..|.+. +. ++.+++| |+++.
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999987 53 5555544 99999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654432 2233456788777653
No 215
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.77 E-value=0.0062 Score=61.45 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--Ccccc---CCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---~~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|.+|.++|..|... |+ ++.+.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 4899999999999999999988 84 6666665433222222221 11000 0001333 56899999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
No 216
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.67 E-value=0.008 Score=57.30 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .. .++-+.++|+||.+
T Consensus 7 ~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~-~~~~l~~adlViaa 77 (202)
T PRK06718 7 DLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EF-EPSDIVDAFLVIAA 77 (202)
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CC-ChhhcCCceEEEEc
Confidence 5889 9999999999999999999998 8888776654323322222333 221000 11 13457889999999
Q ss_pred ecchHHHHHHHHHH
Q 013877 186 ISDAAQADNYEKIF 199 (434)
Q Consensus 186 vpd~a~~~vl~eI~ 199 (434)
|.+...-..+.+..
T Consensus 78 T~d~elN~~i~~~a 91 (202)
T PRK06718 78 TNDPRVNEQVKEDL 91 (202)
T ss_pred CCCHHHHHHHHHHH
Confidence 99988876555443
No 217
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.66 E-value=0.0038 Score=62.33 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=55.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCc---CCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~Ea~~~ADiV 182 (434)
.+++ +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 3677 9999999999999999999988 87 7888898866666666554321000001 1233556789999
Q ss_pred EEeecchH
Q 013877 183 LLLISDAA 190 (434)
Q Consensus 183 iLavpd~a 190 (434)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
No 218
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.61 E-value=0.0068 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.7
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|+|||. |+.|.-+.++|++. |+ +|+ ...+... .-.|... ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 553 3332211 2256664 56788887788999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998665 34455788898885
No 219
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.58 E-value=0.068 Score=52.70 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=123.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCcccc----------CCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~~~~~ 171 (434)
.||+|+|-|.+|+++|.-+..+ |++|..++-..+ +..++.++.|.... -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 999877664322 12223333443211 123568
Q ss_pred HHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEEEec-cchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~~s~-G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
++|++++|=.|-=|+|....- .+|+.+-..+.|..+|.-+. -|-...+-. + +-..-.++-+||--|-.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCccc----
Confidence 999999998888899966653 57776666666766664332 232211111 1 1123467889995554331
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhccc-ccccchhhhhchHHHHHHH------HH
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVES------LF 321 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~-Dlfge~tvL~G~~~aliea------~~ 321 (434)
. ..- +.++.-.+.+..+.+.+|...+|-..+ +.+.|..- .+=-.|-++|+=.-.++.+ -.
T Consensus 151 -P--------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 -P--------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred -c--------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 0 111 335556678999999999999995311 11112100 0000111121111112222 35
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 013877 322 RRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
|.-..+|+-|-+||.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 6777899999999998888887
No 220
>PRK10206 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.0087 Score=61.16 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
-||||||+|.++. .++..+.... .+++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999764 4555553320 04565444444333344455555321 1468999986 57999999999
Q ss_pred hHHHHHHHHH
Q 013877 189 AAQADNYEKI 198 (434)
Q Consensus 189 ~a~~~vl~eI 198 (434)
..+.++..+.
T Consensus 75 ~~H~~~~~~a 84 (344)
T PRK10206 75 DSHFEYAKRA 84 (344)
T ss_pred hHHHHHHHHH
Confidence 9998877654
No 221
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.55 E-value=0.0099 Score=59.49 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=40.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcC-ccccCC---CcCCHHhhhccCCEEEEe
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEENG---TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~~---~~~~~~Ea~~~ADiViLa 185 (434)
|+|||.|.||..+|..|... |+ +|++.+...+.....+. ... ...... ...+ .+.+++||+||++
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 68999999999999999877 66 77766654332111111 111 000000 0234 4568999999997
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
.
T Consensus 74 ~ 74 (300)
T cd01339 74 A 74 (300)
T ss_pred c
Confidence 7
No 222
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0064 Score=61.08 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=57.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 36889 9999999997 999999999988 8888777652 1245566789999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++... .+. .+.+++|++|+++
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDv 230 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDA 230 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEE
Confidence 996322 232 2457899988765
No 223
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.53 E-value=0.011 Score=56.36 Aligned_cols=105 Identities=12% Similarity=0.234 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nL--rds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.++.|||+|++|+|++..- .+. |++++..++.++...-.-. .++.+. ...++++.++ +.|+.+||||
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 7899999999999998532 234 7788777776554221111 123221 1345666676 6899999999
Q ss_pred chHHHHHHHHHHh-cCCCCcEEEEeccchhhhhhcccccCCCCccEEEec
Q 013877 188 DAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 188 d~a~~~vl~eI~~-~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~ 236 (434)
-....++.+.+.. .+| .+|-|+.. + +..|+++.|.-+.
T Consensus 156 a~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~iD 194 (211)
T COG2344 156 AEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVENID 194 (211)
T ss_pred HHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEEee
Confidence 8777777776433 332 25555543 1 2556666655443
No 224
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0068 Score=61.81 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCCcCCHHhhhccCCEEEEe--ec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLL--IS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~~~~~~Ea~~~ADiViLa--vp 187 (434)
-||.|||.|-.|..-|+-...- |-+|.+.+.+..+....-...+.... -.+..+++|++.++|+||-+ +|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999887766544 77898887764443333222333210 11234578999999999965 45
Q ss_pred chHHHH-HHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
-...+. +.+++...||||++|++++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 555555 4457888999999998764
No 225
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.51 E-value=0.012 Score=60.41 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=57.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCcccc--CCCc--CCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~~~--~~~~Ea~~~ADiViLa 185 (434)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +-.+ .+.++.++++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 48999998 99999999999864 134554 222221111111111221000 0001 2455666689999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|.....++..++.. .|..|++.++
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~ 100 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSA 100 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCCh
Confidence 999998888877643 5777776665
No 226
>PRK04148 hypothetical protein; Provisional
Probab=96.42 E-value=0.031 Score=50.45 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=67.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~~ADiViLavp 187 (434)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... ++-.....+.-+++|+|.-.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 99875 55666667788888776322 2222334577899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777766667777665554444
No 227
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0069 Score=60.95 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCH--HhhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~--~Ea~~~ADiV 182 (434)
...+| ++|.|+|.|=.+.|++..|.+. |. +|.|.+|+.++..+.+...+-.......... .+...++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 34457 9999999999999999999999 86 7899999877766776654411000001111 1222269999
Q ss_pred EEeecchHHHHH----HHHHHhcCCCCcEEEEe
Q 013877 183 LLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (434)
Q Consensus 183 iLavpd~a~~~v----l~eI~~~Lk~g~iL~~s 211 (434)
|.+||....... +. ...++++.++.+.
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999997766532 11 3345666666643
No 228
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.35 E-value=0.029 Score=50.72 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeecc
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavpd 188 (434)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++....+...+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887654433 3444322222334 45778899999999984
No 229
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.33 E-value=0.008 Score=69.87 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhc---------CCcEEEEEecCCchhHHHHHHc-Cc--cccCCCcCCHHh---h
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE---T 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~E---a 175 (434)
+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLLKY 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHHHh
Confidence 48999999999999999999865 1000 0113666665433333333333 42 1101 345444 4
Q ss_pred hccCCEEEEeecchHHHHHHHH
Q 013877 176 ISGSDLVLLLISDAAQADNYEK 197 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~e 197 (434)
++++|+|+.|+|+..+..+...
T Consensus 646 v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHH
Confidence 4689999999999988887764
No 230
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.23 E-value=0.026 Score=57.29 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--C--ccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||+|.+|.++|..|... |+ ++.+.+....+....+.+. . +........+..+.+++||+||++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIit 80 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVIT 80 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEe
Confidence 7999999999999999999988 77 5666655433322222221 1 100000011234568999999997
Q ss_pred ec
Q 013877 186 IS 187 (434)
Q Consensus 186 vp 187 (434)
.-
T Consensus 81 ag 82 (315)
T PRK00066 81 AG 82 (315)
T ss_pred cC
Confidence 54
No 231
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.23 E-value=0.02 Score=58.28 Aligned_cols=137 Identities=22% Similarity=0.201 Sum_probs=93.4
Q ss_pred hhhhccccCccccccccchhhhhhhhcccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcC
Q 013877 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~ 139 (434)
|.+.-.++-|. .+-|-++-+.+--+|-|-.|.++-+= .+. .---+.| |.+.|.|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dgi--kra-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDGI--KRA-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhhh--hhh-hhheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44444444333 56677777777777777777544310 000 0124666 8889999999999999999987
Q ss_pred CcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
|-.|+|..-.+-...+.| -.|+. +.+++|+++++|+++.++--..+ +..+.+..||.++||+-..-|.
T Consensus 237 g~~VivTEiDPI~ALQAa-MeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICALQAA-MEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHHHHH-hhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 888877654333334443 46887 57899999999999999876544 3346777899999988555454
No 232
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.21 E-value=0.018 Score=62.34 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--C----C-----C--cCC-------
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD------- 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~-----~--~~~------- 171 (434)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + . ..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999987 8887666555 445777877776420 0 0 0 001
Q ss_pred ---HHhhhccCCEEEEee--cchHHHH-HHHHHHhcCCCCcEEEEec
Q 013877 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 172 ---~~Ea~~~ADiViLav--pd~a~~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
..+.++++|+||.++ |-..... +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578899999988 1111122 3345677899999988664
No 233
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.017 Score=58.22 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| ++|.|||.|. .|..++.-|.+. |..|.+..+. +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 36889 9999999998 999999999887 8888776542 1357788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
++.-... +. ..++++|++|+++.
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953332 21 15678999888763
No 234
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.19 E-value=0.025 Score=57.17 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.||.|.|. |++|..+.+||.+. |+++++...+..-. .+-.|+.. ..++.|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999996 88999999999987 77644344332000 11246664 5688888776 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
....+++++... ..-..++++++||..+
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988654 2334578899999754
No 235
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.18 E-value=0.026 Score=57.69 Aligned_cols=119 Identities=10% Similarity=0.136 Sum_probs=81.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEee
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLav 186 (434)
.||-|-|. |.+|.-+++.+++. |-+|+-|..+.. .... ..|+.. ..++.|+.+. .|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 68999995 99999999999999 888887876533 2221 126654 6689999887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhH
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
|+....+.+.+.... .-..+|+++.||.........-.....-.+..+=||+||-..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 999999888774432 123377899999753211100011112244556699988553
No 236
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.18 E-value=0.01 Score=61.24 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+++ ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6766677544444445443311 1346788999999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++....... +.. ..++++.+++|.
T Consensus 221 ~~ts~~~~~~-I~~--~~l~~~~~viDi 245 (340)
T PRK14982 221 WVASMPKGVE-IDP--ETLKKPCLMIDG 245 (340)
T ss_pred ECCcCCcCCc-CCH--HHhCCCeEEEEe
Confidence 9987533211 111 234677777765
No 237
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.16 E-value=0.0083 Score=63.28 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCchhHHHHH--------HcCccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.||+|||.|++|.+.+. .+.... +-.|.+|++.++..++ .+... ..+....=....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 443210 0115677766654332 22211 11111000014578899999999
Q ss_pred EEEeecchHHHHHH
Q 013877 182 VLLLISDAAQADNY 195 (434)
Q Consensus 182 ViLavpd~a~~~vl 195 (434)
||.+++........
T Consensus 78 Vi~ai~~~~~~~~~ 91 (423)
T cd05297 78 VINTIQVGGHEYTE 91 (423)
T ss_pred EEEeeEecCccchh
Confidence 99999976554433
No 238
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.16 E-value=0.0069 Score=57.78 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd~ 189 (434)
++|+|||+|.+|.+++..+... . .|++++...+.+....... ..|+.. ....++.+.+++ .|.|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 2777655454433211111 123321 013456677754 99999999999
Q ss_pred HHHHHHHHHH
Q 013877 190 AQADNYEKIF 199 (434)
Q Consensus 190 a~~~vl~eI~ 199 (434)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 239
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.09 E-value=0.021 Score=51.73 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999976 7889999999887 8888766432 1256788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-.. +++ ...+|||++|++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 232 3458999887743
No 240
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.08 E-value=0.018 Score=52.78 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=58.1
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccC
Q 013877 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~A 179 (434)
||.. -.++| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+. .+.+ +.. ...... ++-++++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l-~~l~~i~~-~~~~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEM-KELPYITW-KQKTFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHH-HhccCcEE-EecccC-hhcCCCc
Confidence 5555 57899 9999999999999999999998 9888766332 12222 2222 211 101112 2236889
Q ss_pred CEEEEeecchHHHHHHHHHHh
Q 013877 180 DLVLLLISDAAQADNYEKIFS 200 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~ 200 (434)
|+|+.+|.|...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999888766655543
No 241
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.99 E-value=0.032 Score=61.47 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
.+|-|+|+|.+|..+++.|++. |+++++-+ .+++..+.+++.|...--|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 98876544 5566678888888643222222322 12678999999999
Q ss_pred chHHHH
Q 013877 188 DAAQAD 193 (434)
Q Consensus 188 d~a~~~ 193 (434)
|.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 987763
No 242
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.99 E-value=0.028 Score=56.61 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=67.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.+|.|.| .|.+|..+-.+|+.. |.+++++..+. +. ..+-.|+.. ..++.|+-+. .|++++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 689999999999988 88765555443 11 112257764 5678887775 6999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i 216 (434)
....+++++.... .-..++++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886542 23357889999964
No 243
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.97 E-value=0.044 Score=51.84 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=50.8
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcCccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..++.|...-..... ++.++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789995 99999999999998 9999888887532 344555677643222222 35568999999999999
No 244
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.97 E-value=0.036 Score=54.43 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=42.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHH-------c-CccccCCCcCCHHhhhccCC
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~-------~-G~~~~~~~~~~~~Ea~~~AD 180 (434)
|+|||. |.+|..++..|... | .++.+.+....+....+.+ . .... ....|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666665443322221111 1 1111 01345678999999
Q ss_pred EEEEee
Q 013877 181 LVLLLI 186 (434)
Q Consensus 181 iViLav 186 (434)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
No 245
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.94 E-value=0.021 Score=48.50 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++| ++|.|||.|.+|..=++.|.+. |-+|+|..... ...+..+... ....++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4678 9999999999999999999998 88887765542 1111222211 123456688999999999
Q ss_pred cchHHHHHHHH
Q 013877 187 SDAAQADNYEK 197 (434)
Q Consensus 187 pd~a~~~vl~e 197 (434)
.|....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98777644433
No 246
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.91 E-value=0.036 Score=60.19 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
..|-|+|+|.+|..+++.|++. |+++++.+ ++++..+.+++.|...-.+...+.+ .-++++|.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3799999999999999999999 99876655 4455577777877643222223322 12568999999999
Q ss_pred chHHH
Q 013877 188 DAAQA 192 (434)
Q Consensus 188 d~a~~ 192 (434)
|+...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87654
No 247
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.86 E-value=0.062 Score=56.07 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=58.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--CccccCCCcCCHH----hhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----Ea~~~ADiViLa 185 (434)
++|.|||+|.+|..+++.|.+. |++|++..+. ++..+...+. +...-.+...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 9888766554 3334444443 3321111122322 245789999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++....-+...+...+.+..+++.+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 99765433333344445555555533
No 248
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.79 E-value=0.024 Score=54.26 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc--CC----HHhhhcc
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~--~~----~~Ea~~~ 178 (434)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+.+.+............-. .+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs----~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE----KHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc----cccccchhhHHHHHhhh
Confidence 36899 999999987 7899999999888 888877643321110000000000 01 12 6789999
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
||+||.+++..... +. ...+|+|++|+++.
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 99999999965541 11 24578999998864
No 249
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.79 E-value=0.04 Score=52.31 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=53.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc-----
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA----- 160 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~----- 160 (434)
+.|++ +||.|||+|.+|..++++|... |+ ++.+.++.. .+....++..
T Consensus 17 ~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 17 QRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred HHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 67788 9999999999999999999998 87 555554320 1111111111
Q ss_pred Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. .+... .+..+.++++|+||.|+-.......+.+..
T Consensus 90 ~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 90 DIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1100 00111 124567889999999987665555665543
No 250
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.79 E-value=0.031 Score=60.60 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=65.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCC-------------cCCH
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------------~~~~ 172 (434)
..+ .||.|||+|.+|...++.++.. |.+|++.+++ ....+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~-~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTR-PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 345 8999999999999999999887 8876655544 556788888887510 100 0010
Q ss_pred --------HhhhccCCEEEEeecchH--HHHH-HHHHHhcCCCCcEEEEe
Q 013877 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLS 211 (434)
Q Consensus 173 --------~Ea~~~ADiViLavpd~a--~~~v-l~eI~~~Lk~g~iL~~s 211 (434)
.+.++++|+||-++.-.. ...+ .++....||+|.+|++.
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 122357999999986322 2344 36777889999988765
No 251
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.70 E-value=0.039 Score=56.82 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=49.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCcccc-----------CC---CcCCHHhhhcc
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------~~---~~~~~~Ea~~~ 178 (434)
|||+|+|.+|..+++.+.+. .+++++..++.+.+. ...|...|+..- +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156765445543321 233443332110 00 02468888999
Q ss_pred CCEEEEeecchHHHHH
Q 013877 179 SDLVLLLISDAAQADN 194 (434)
Q Consensus 179 ADiViLavpd~a~~~v 194 (434)
+|+|+.|+|......-
T Consensus 76 vDiVve~Tp~~~~~~n 91 (333)
T TIGR01546 76 VDIVVDATPGGIGAKN 91 (333)
T ss_pred CCEEEECCCCCCChhh
Confidence 9999999998776543
No 252
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.70 E-value=0.072 Score=50.74 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=59.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---Cc---------------hhHHHHHH----cC
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~---~~---------------~s~~~A~~----~G 161 (434)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.++. .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 56555433 10 00000000 00
Q ss_pred -cccc--CCC--cCCHHhhhccCCEEEEeecchHHH-HHHHHHHhcCCCCcEEEEeccc
Q 013877 162 -FTEE--NGT--LGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 162 -~~~~--~~~--~~~~~Ea~~~ADiViLavpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.... +.. ..+..+.++++|+||-|+-+.... .+++++...++...+++ ..|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 0000 000 112345688899999995443444 34566777665543444 5565
No 253
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.69 E-value=0.031 Score=57.52 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=50.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCCchhHHHHHH-c--CccccCCCcCC---HHhhhccCCEEEEe
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
|.|||+|.+|..+++.|.+. + + +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875544444432 1 22110000223 45688999999999
Q ss_pred ecchHHHHHHHH
Q 013877 186 ISDAAQADNYEK 197 (434)
Q Consensus 186 vpd~a~~~vl~e 197 (434)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999865666654
No 254
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.60 E-value=0.054 Score=50.24 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=51.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 35889 999999988 5999999999998 8887765432 1256778899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... ++ ...+|+|++|+++
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDv 107 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDV 107 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE-
T ss_pred eeccccc---cc--cccccCCcEEEec
Confidence 9985333 22 2458999988866
No 255
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.033 Score=56.17 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=57.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| |+|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 36889 999999999 9999999999888 8888765321 1245678999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... +. ..++|+|++|+++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDv 228 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDI 228 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEe
Confidence 9975443 22 2356899998876
No 256
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.51 E-value=0.039 Score=53.33 Aligned_cols=79 Identities=16% Similarity=0.013 Sum_probs=48.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCccccC-C-CcCCHH
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~-~-~~~~~~ 173 (434)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46788 9999999999999999999998 886555445444 444444433322100 0 000112
Q ss_pred hh-hccCCEEEEeecchHH
Q 013877 174 ET-ISGSDLVLLLISDAAQ 191 (434)
Q Consensus 174 Ea-~~~ADiViLavpd~a~ 191 (434)
+. -.++|+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 21 1268888888775533
No 257
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.47 E-value=0.066 Score=59.28 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
++|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...-.|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 9887654 45566677788888754222222322 23568999999999
Q ss_pred chHHHH
Q 013877 188 DAAQAD 193 (434)
Q Consensus 188 d~a~~~ 193 (434)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 877653
No 258
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.043 Score=57.38 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++|.|||+|.+|.++|+.|++. |++|++.++... ..... +... +....+.+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999998 988766554322 11111 1110 000122333457799999887544
No 259
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.43 E-value=0.045 Score=55.61 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=42.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCccccCC-C-cCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~-~-~~~~~Ea~~~ADiVi 183 (434)
.||+|||+|.+|.++|..|... |+ ++.+.+....+....+.+ ..+..... . ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999877 65 555555443322222222 21110000 1 245554 89999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 260
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.37 E-value=0.05 Score=54.76 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| +++.|||.+ ..|..+|.-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 36899 999999999 9999999999877 7777776542 1256788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-. .++. ..++|+|++|++++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2232 12369999988763
No 261
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.35 E-value=0.042 Score=54.99 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---chhHHHHHHc---C--ccccCCCcC---CHHh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~E 174 (434)
.+++ +++.|+|.|-+|.+++..|.+. |.+ |.+.+|.. ++..+.+++. + .....-... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 884 88888864 3333333321 1 000000011 2234
Q ss_pred hhccCCEEEEeecchHH
Q 013877 175 TISGSDLVLLLISDAAQ 191 (434)
Q Consensus 175 a~~~ADiViLavpd~a~ 191 (434)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987553
No 262
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.34 E-value=0.12 Score=49.54 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+......+.| +....+. .. .+-+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 4788 9999999999999999999998 8888776554333333333333 3221111 12 3456889999999
Q ss_pred ecchHHH-HHHHH
Q 013877 186 ISDAAQA-DNYEK 197 (434)
Q Consensus 186 vpd~a~~-~vl~e 197 (434)
+.|.... .++..
T Consensus 77 t~d~~ln~~i~~~ 89 (205)
T TIGR01470 77 TDDEELNRRVAHA 89 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 9987554 44443
No 263
>PRK05442 malate dehydrogenase; Provisional
Probab=95.20 E-value=0.16 Score=52.08 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCc------hhHHHHHHc-CccccCCCcCCHHh
Q 013877 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-GFTEENGTLGDIYE 174 (434)
Q Consensus 110 g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~------~s~~~A~~~-G~~~~~~~~~~~~E 174 (434)
...||+|||. |.+|.++|..|... |+ ++.+.+.... ..++..... .+...-....+..+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~ 76 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNV 76 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHH
Confidence 4579999998 99999999988765 43 4544443211 112222111 11000000234568
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
.+++||+||++--
T Consensus 77 ~~~daDiVVitaG 89 (326)
T PRK05442 77 AFKDADVALLVGA 89 (326)
T ss_pred HhCCCCEEEEeCC
Confidence 8899999998754
No 264
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.16 E-value=0.068 Score=55.20 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+++ ++|.|||.|-||.-.+++|++. |. ++++.+|+... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34778 9999999999999999999998 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 013877 185 LI 186 (434)
Q Consensus 185 av 186 (434)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 265
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.14 E-value=0.09 Score=54.32 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=60.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec---
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp--- 187 (434)
.||||||+ .+|..++..+++. . .+++++. ..+..+++.+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999875 0 0345543 3444456677888888753 6799999988888888875
Q ss_pred -chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 -DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 -d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45666666543 45566544
No 266
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.086 Score=53.30 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| +++.|||.+. .|..++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 36889 9999999998 999999999888 8788766521 2357788899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++--.. ++. ..++++|++|+++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDv 235 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDV 235 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEe
Confidence 776432 222 2357899988876
No 267
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.09 E-value=0.13 Score=52.89 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=56.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------chhHH---HHHH
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~---------------------~~s~~---~A~~ 159 (434)
.+.|++ ++|.|||+|..|..+|.+|..+ |+ ++.+.++.. .+... ..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467888 9999999999999999999998 87 555554421 11111 1111
Q ss_pred --cCcccc----CCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHh
Q 013877 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (434)
Q Consensus 160 --~G~~~~----~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~ 200 (434)
.++..+ +.+..+.++.++++|+||.++-+....-++.++..
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 112110 11112456788999999999976666566666543
No 268
>PLN02602 lactate dehydrogenase
Probab=95.09 E-value=0.16 Score=52.69 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=41.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCccccCCCc---CCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTL---GDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~~~---~~~~Ea~~~ADiV 182 (434)
+||+|||.|++|.++|..|... ++ ++.+.+.........+.+ ..+.. ...+ .+.+ .+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~-~~~i~~~~dy~-~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLP-RTKILASTDYA-VTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCC-CCEEEeCCCHH-HhCCCCEE
Confidence 5999999999999999999877 65 555555433322222221 11110 0001 2444 48999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 9984
No 269
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.04 E-value=0.036 Score=56.68 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=45.8
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----c-CccccCCCc-CCHHhh
Q 013877 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET 175 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~Ea 175 (434)
|.++|. +||+|||. |.+|.++|..|... ++ ++++.+.. .....+.+ . .+...+.+. .+..++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence 456677 99999999 99999999999865 43 55555542 11111111 1 111101111 122688
Q ss_pred hccCCEEEEeecc
Q 013877 176 ISGSDLVLLLISD 188 (434)
Q Consensus 176 ~~~ADiViLavpd 188 (434)
++++|+|+++.-.
T Consensus 74 l~gaDvVVitaG~ 86 (321)
T PTZ00325 74 LRGADLVLICAGV 86 (321)
T ss_pred hCCCCEEEECCCC
Confidence 9999999987643
No 270
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.04 E-value=0.064 Score=56.73 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+.+++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45667 89999999999999 89999999 99987766543332333445576541 1223455678998887
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 73 s 73 (461)
T PRK00421 73 S 73 (461)
T ss_pred C
Confidence 5
No 271
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.03 E-value=0.028 Score=51.57 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=61.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC------------------
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------ 166 (434)
+..+.. .+|.|+|.|+.|..-+.-+..- |.+|++.+.. ....+.....+.....
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344555 7999999999999988888887 9988766654 3334444444432100
Q ss_pred ----CCcCCHHhhhccCCEEEEe--ecchHHHHHHH-HHHhcCCCCcEEEEec
Q 013877 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 167 ----~~~~~~~Ea~~~ADiViLa--vpd~a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.....+.+.++.+|+||.+ .|+.....++. +....|+++.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001245788999999963 45555566664 5677899999998774
No 272
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.01 E-value=0.067 Score=53.78 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCc---hhHHHHHHcCccccC-CCcCC------HHhh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~~~~~------~~Ea 175 (434)
.+++ +++.|||.|-.+.|++..|... |. +|.|.+|..+ +..+.+...+..... -...+ ..+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3677 8999999999999999999887 86 7888888742 444444433210000 00112 2235
Q ss_pred hccCCEEEEeecchHH
Q 013877 176 ISGSDLVLLLISDAAQ 191 (434)
Q Consensus 176 ~~~ADiViLavpd~a~ 191 (434)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997554
No 273
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.97 E-value=0.11 Score=52.54 Aligned_cols=68 Identities=25% Similarity=0.342 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--chhHHHHH-------HcCccccCCC-cCCHHhhhcc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGT-LGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~-~~~~~Ea~~~ 178 (434)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+... .-. ..+ .+.+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~~d-~~~l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKISSD-LSDVAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEECCC-HHHhCC
Confidence 58999998 99999999999987 76 466666532 11111110 111100 000 124 456999
Q ss_pred CCEEEEeec
Q 013877 179 SDLVLLLIS 187 (434)
Q Consensus 179 ADiViLavp 187 (434)
||+||++..
T Consensus 73 aDiViitag 81 (309)
T cd05294 73 SDIVIITAG 81 (309)
T ss_pred CCEEEEecC
Confidence 999999985
No 274
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.89 E-value=0.1 Score=52.59 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=42.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cccc-cCCC--cCCHHhhhccCCEEEEee
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT--LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~~~--~~~~~Ea~~~ADiViLav 186 (434)
|+|||+|.+|.++|..|... |+ ++.+.+...++....+.+. .... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 74 5666655443332222211 1110 0000 112246889999999987
Q ss_pred c
Q 013877 187 S 187 (434)
Q Consensus 187 p 187 (434)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 6
No 275
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.88 E-value=0.084 Score=53.94 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=41.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCch--hHHHHHH--cCcccc-CC--CcCCHHhhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--AGFTEE-NG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~G~~~~-~~--~~~~~~Ea~ 176 (434)
.||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ +...+. .. ...+..+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 76 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF 76 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh
Confidence 69999999 99999999999876 54 45544442211 1111111 111000 00 013456788
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+||++--
T Consensus 77 ~daDivvitaG 87 (322)
T cd01338 77 KDADWALLVGA 87 (322)
T ss_pred CCCCEEEEeCC
Confidence 99999999854
No 276
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.084 Score=53.19 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+. |..|.+.... +.+..+.+++||+|+.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 6889 999999999 8999999999887 7777655321 12566789999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDv 228 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDI 228 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEe
Confidence 985433 22 2457899988875
No 277
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.62 E-value=0.1 Score=53.56 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhh---h-hhcCCcEEEE-EecC---------Cc-hhHHHHHHcCcccc-C--CCcCCHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVKV-GLRK---------GS-RSFAEARAAGFTEE-N--GTLGDIY 173 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~---~-~~~~G~~Viv-g~r~---------~~-~s~~~A~~~G~~~~-~--~~~~~~~ 173 (434)
.+|+|||+|+||..+++.|++.- . ..+.+++|+. .+++ +. +..+.+.+.|.... . ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 58999999999999999987641 0 0122344432 2321 11 11122222332110 0 0123677
Q ss_pred hhh--ccCCEEEEeecchHHH-HH-HHHHHhcCCCCcEEEE
Q 013877 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (434)
Q Consensus 174 Ea~--~~ADiViLavpd~a~~-~v-l~eI~~~Lk~g~iL~~ 210 (434)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 3689999999986552 22 2223455667776553
No 278
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.11 Score=52.62 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++++.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999976 7899999999887 7777665421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDV 226 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDV 226 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 986433 22 3457999988875
No 279
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.11 Score=52.84 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999976 7899999999888 8787765321 23577888999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (297)
T PRK14186 209 AGRPNL---IG--AEMVKPGAVVVDV 229 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985432 32 3457999988876
No 280
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.58 E-value=0.25 Score=50.65 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=42.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--chhHHHHHH--cCcccc-CC--CcCCHHhhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGFTEE-NG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~--~~s~~~A~~--~G~~~~-~~--~~~~~~Ea~ 176 (434)
.||+|||. |.+|.++|..|... |+ ++++.+... ++....+.+ +...+. .. ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 455554432 112222221 111000 00 013456788
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+||++--
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999999754
No 281
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.57 E-value=0.07 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..+++ ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 55788 9999999999999999999988 98876
No 282
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.082 Score=55.99 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=50.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch----hHHHHHHcCccccCCCcCCHHhhhccCC
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
...+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+..++.|+.... -....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCC
Confidence 355677 9999999999999999999999 9998776654321 11335566765311 012245567899
Q ss_pred EEEEe
Q 013877 181 LVLLL 185 (434)
Q Consensus 181 iViLa 185 (434)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 98886
No 283
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.46 E-value=0.37 Score=51.54 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhc--CCc--EEEEEecCCchhHHHHHH--cCc-cccCC-C-cCCHHhhhccCCE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDI--VVKVGLRKGSRSFAEARA--AGF-TEENG-T-LGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~--~G~--~Vivg~r~~~~s~~~A~~--~G~-~~~~~-~-~~~~~Ea~~~ADi 181 (434)
-||+|||. |++|.++|-.|... +=+| .++ ++++.+...++....+.+ ++. ..... . ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 99999999988743 0000 022 454444443433333322 111 00000 0 1245578899999
Q ss_pred EEEeec
Q 013877 182 VLLLIS 187 (434)
Q Consensus 182 ViLavp 187 (434)
||+.--
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999754
No 284
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.42 E-value=0.15 Score=43.50 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEeecchHHHH-HHH
Q 013877 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (434)
Q Consensus 121 ~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~-vl~ 196 (434)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++.+|+|+++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5677888889888 9998766543222 22222 245664 5678999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 013877 197 KIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 197 eI~~~Lk~g~iL~~s~G~ 214 (434)
++...|+++.+|++..|+
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888889888764
No 285
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.41 E-value=0.13 Score=51.90 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999976 7899999999888 8777765421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 2457899998876
No 286
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.13 Score=51.98 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999987 7899999999887 7777665321 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 2457899988875
No 287
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.37 E-value=0.12 Score=52.54 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+|+.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 7899999999887 7788765321 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-. .++. ..++|+|++|+++
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDv 238 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDV 238 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEe
Confidence 9753 2332 3457999988865
No 288
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.14 Score=51.76 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=57.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999976 7899999999987 7777765421 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3457899988876
No 289
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.13 Score=51.80 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+...+ +.++++.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 7899999999887 7777765322 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDv 227 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDV 227 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 2457899988876
No 290
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.33 E-value=0.42 Score=43.82 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----c--hhH----HHHHHcCc--cccCCCcCCHHh
Q 013877 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (434)
Q Consensus 109 ~g~kkIgIIG--~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~~~~~~~~~E 174 (434)
+| +||++|| .+++..|++..+..- |.++.+....+ . ... +.+.+.|. .. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 489999999999887 98866654433 1 122 22333343 32 468999
Q ss_pred hhccCCEEEEeecc
Q 013877 175 TISGSDLVLLLISD 188 (434)
Q Consensus 175 a~~~ADiViLavpd 188 (434)
+++++|+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999877655
No 291
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.31 E-value=0.13 Score=51.88 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.+.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 36789 999999998 4699999999988 8888776432 2356678899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++--..... .+++|+|++|+++
T Consensus 206 AvG~p~~i~-----~d~vk~gavVIDV 227 (283)
T COG0190 206 AVGKPHFIK-----ADMVKPGAVVIDV 227 (283)
T ss_pred ecCCccccc-----cccccCCCEEEec
Confidence 987533322 4678999988876
No 292
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.31 E-value=0.1 Score=52.98 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=42.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCcccc-C--CCcCCHHhhhccCCEEE
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-N--GTLGDIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-~--~~~~~~~Ea~~~ADiVi 183 (434)
||+|||.|.+|.++|..|... ++ ++++.+....+....+.+ .-+... + ....+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 799999999999999999877 66 555555443322222222 111100 0 01123 47789999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9854
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.26 E-value=0.26 Score=50.94 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh-ccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-SGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~-~~ADiViLav 186 (434)
.| ++|+|+|+|-.|..-.+-.+.. |.+|+...++ ++..+.|++.|...- +....+..+.+ +.+|+|+.++
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 46 8999999997777766666666 8888766655 445788888886421 11111222333 3399999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++...... .+.|+++-+++.
T Consensus 238 ~~~~~~~~----l~~l~~~G~~v~ 257 (339)
T COG1064 238 GPATLEPS----LKALRRGGTLVL 257 (339)
T ss_pred ChhhHHHH----HHHHhcCCEEEE
Confidence 93332233 344566665553
No 294
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.1 Score=55.63 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+.... -....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45667 8999999999999999999999 998877665433322333455765311 01233456788998875
No 295
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.26 E-value=0.095 Score=52.62 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCC--CcCC---HHhhhccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~--~~~~---~~Ea~~~AD 180 (434)
.+++ +++.|||.|-.|+|++-.|.+. |. ++.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 3567 8999999999999999999988 87 67788887666655554421000000 0112 233556789
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999544
No 296
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.20 E-value=0.13 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
+||.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence 7999999999999999999999 87 555554
No 297
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.14 Score=53.59 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----HHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+++ ++|.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999887776532222 222334543210 111234557799999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
No 298
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.13 E-value=0.17 Score=51.70 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCcEEEEEecCCchhHHHHHHcCcc----c--cCC-CcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFT----E--ENG-TLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~----~--~~~-~~~~~~Ea~~~ADiV 182 (434)
.||+|||. |.+|.+++..|... +.....+.++++.++........+...-+. + .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 000000236666655322111111111111 0 000 024556889999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9874
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.08 E-value=0.25 Score=50.72 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcC-CHH----hhh--ccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----Ea~--~~ADiVi 183 (434)
.++.|+|+|.+|...++.++.. |...++..+.++...+.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888877 76444444555667888888 44432100001 111 222 3589999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
-|+. ....+.+....++++-.+++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334555666677787766544
No 300
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.16 Score=51.22 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=56.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5899 999999966 7899999999887 7777765321 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vG~p~~---i~--~~~ik~gavVIDv 229 (284)
T PRK14190 209 VGKPKL---IT--ADMVKEGAVVIDV 229 (284)
T ss_pred cCCCCc---CC--HHHcCCCCEEEEe
Confidence 975442 22 2356899998876
No 301
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=94.06 E-value=0.38 Score=43.18 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=64.5
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 263 iav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
|+++. +.++.+.+..|+..+|+.. +.. .+..--+||..+++ |+.+.+++....+.+.++|+++++|++...--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~~-~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGRP-FEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSEE-EE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCce-EEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 34555 7889999999999999852 222 22233389998876 99999999999999999999999988755555
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGMLAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~~~m~~~vssp~~ 367 (434)
+.+ ..+-+.+.|. .+.++-|..
T Consensus 78 i~~-t~~n~~~~g~---~~alTGP~~ 99 (132)
T PF10728_consen 78 IRE-TLENILQLGP---ADALTGPAA 99 (132)
T ss_dssp HHH-HHHHHHHS-H---HHH--SCCH
T ss_pred HHH-HHHHHHhcCc---hhccCCCcc
Confidence 554 4444555554 367787754
No 302
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.95 E-value=0.31 Score=50.41 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccC--CEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A--DiViLavpd 188 (434)
-++||+|+|.|+.=.+++|.-. .+ +++.|+ |..+..+++.+.|+..++. .-....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998754 11 155443 3445455677888888883 122367899999877 999999999
Q ss_pred hHHHHHHHHHHh
Q 013877 189 AAQADNYEKIFS 200 (434)
Q Consensus 189 ~a~~~vl~eI~~ 200 (434)
.++.++.-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999988765443
No 303
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.94 E-value=0.16 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=25.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
..|+. .+|.|||+|..|..+|++|...
T Consensus 17 ~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 17 EKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 67778 9999999999999999999998
No 304
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.18 Score=50.92 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 36889 999999977 7899999999887 7777765432 1356677899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... +. ..++|+|++|+++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEe
Confidence 9985443 22 2457899998876
No 305
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.91 E-value=0.23 Score=50.34 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 7899999999887 7777765421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-.. ++. ..++|+|++|+++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDv 230 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDV 230 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEe
Confidence 98432 222 2457899988875
No 306
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.15 Score=54.11 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=48.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+....+|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 999887765432 11234556677531 11111234568999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9875
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.85 E-value=0.52 Score=47.55 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CchhHHHHHHcCccccCCCcCCHHh--hhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~E--a~~~ADiViL 184 (434)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++..+.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 57 8999999999999999998888 8887766653 3455778888887531111111111 2235799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.... .+.+....++++..++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 997432 344555667777665533
No 308
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.19 Score=50.77 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999977 7899999999877 7777665432 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDv 228 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDV 228 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985433 22 2357899988875
No 309
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.75 E-value=2.1 Score=44.03 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCC--cEEE-EEecCCc---------hhH-HHHHHcCcccc--C--C-CcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~--~~~G--~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--~--~-~~~~ 171 (434)
.+|+|+|+|++|..+++.|.+.-+. ...| ++|+ |.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773110 0114 4433 2232211 111 11111121000 0 0 0125
Q ss_pred HHhhh--ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 172 ~~Ea~--~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+|.+ .++|+||-++++....+++.+. |+.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 4789999999877666666554 44565444
No 310
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.73 E-value=1.7 Score=44.55 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=90.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||+||| -|-.|.-+.+-|.+. ..+++. .... .+. +. ..+.+++++++|+||+|+|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s-~~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAP-DRR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEec-ccc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 688888888888765 123432 2222 111 22 2355667788999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
..++.+.+. ..|..|++.++- + .+ +-+++-+.|.-... .|+..+. .. +|+ .....
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl--~~~~~yglPEln~~-~~~~i~~--------a~-lIA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RT--ADDWAYGFPELAPG-QREKIRN--------SK-RIA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hC--CCCCeEEccccCHH-HHHhhcc--------CC-EEE-CCCCH
Confidence 888776653 367778877763 1 11 11677777865433 2222222 22 233 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHH
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~ 321 (434)
..+.-+++.=+...|.. +....-.+...+..+|++-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 45555555444444532 11111245566667778777666544
No 311
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.71 E-value=0.32 Score=46.13 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467778 9999999999999999999998 87 444443
No 312
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.68 E-value=0.31 Score=46.24 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
.+.++. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 367788 9999999999999999999998 87 444443
No 313
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.18 Score=53.26 Aligned_cols=66 Identities=29% Similarity=0.297 Sum_probs=45.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++..... ....+.|+... ..+ .+.+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3567 8999999999999999999998 99887665442222 23445676531 112 234578998886
No 314
>PRK15076 alpha-galactosidase; Provisional
Probab=93.65 E-value=0.095 Score=55.65 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCchhHHHHH--------HcCccccCCCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~--nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
|+||+|||.|++|.+.+. .+.... .-.+.+|++.+.. ....+.+. ..+....-..+.|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~--~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP--ALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc--cCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 479999999999977665 554210 0113466655543 33232111 1221100011456789999999
Q ss_pred EEEEeecch
Q 013877 181 LVLLLISDA 189 (434)
Q Consensus 181 iViLavpd~ 189 (434)
+||.++-..
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998764
No 315
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.64 E-value=0.33 Score=49.53 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=41.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--chhHHHHHHcCccccCCC--c-C-CHHhhhccCCEEE
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAGFTEENGT--L-G-DIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G~~~~~~~--~-~-~~~Ea~~~ADiVi 183 (434)
||+|||. |++|.++|..|... ++ ++++.+... ....+.. ++.....-. . . +..+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~--~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLS--HIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhh--cCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999877 65 555444432 1122222 221100000 0 1 2367899999999
Q ss_pred Eeecc
Q 013877 184 LLISD 188 (434)
Q Consensus 184 Lavpd 188 (434)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 98653
No 316
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.32 Score=48.64 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=91.5
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hH----HHH---HHcCccccCCCcCCHHhhhccCCE
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~----~~A---~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+.||+|+|+ |.||..+.+.+.+. .++++.....+... +. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 14565555444322 11 111 1122222 2345667788999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhH--HHHHhhcccccC-CC
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~~G~~~~G-~G 258 (434)
+|=-+-|....+.++....+= -.+|+=..||+-..++. .-...+.+.++ ++||.+--+. -.+-++--.+.+ +-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888876544321 22566678987433322 11223345555 7898875431 011011000111 12
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 013877 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (434)
Q Consensus 259 v~aliav~q-----dvsg~a~e~a~~la~aiG 285 (434)
+-- |-.|. -.||.|+.++..++.+.|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 222 22232 367888888888888888
No 317
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.64 E-value=0.37 Score=49.65 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------chhHHHHHH---
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~---------------------~~s~~~A~~--- 159 (434)
...|+. .+|.|||+|.+|..+|++|..+ |+ ++.+.++.. .+....++.
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999998 87 665555421 111111111
Q ss_pred c--Ccccc----CCCcCCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 160 A--GFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 160 ~--G~~~~----~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
. .+... +-+..+..+.++++|+||.++-+.....++.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 11100 0011234577899999999988777666666644
No 318
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.63 E-value=0.2 Score=51.29 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--chhH----HHHHHc-----CccccCCCcCCHH
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~--~~s~----~~A~~~-----G~~~~~~~~~~~~ 173 (434)
||+|||. |.+|.+++..|... ++ ++.+.+... +... +..... +... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355554433 2111 111110 1111 13566
Q ss_pred hhhccCCEEEEee
Q 013877 174 ETISGSDLVLLLI 186 (434)
Q Consensus 174 Ea~~~ADiViLav 186 (434)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999874
No 319
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.21 Score=50.74 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=57.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 7899999999887 7777665421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 2457899988875
No 320
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.63 E-value=0.18 Score=51.53 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCchhHHHHHHcCccc-----cCC--CcCCHHhhhc
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTE-----ENG--TLGDIYETIS 177 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~-----~~~--~~~~~~Ea~~ 177 (434)
||+|||. |.+|.++|..|... ++ ++++.++........+...-... ... ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 35555543221111111100000 000 0124467899
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999754
No 321
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.59 E-value=0.21 Score=50.77 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 156 ETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5889 999999977 78999998887611000 5566654421 23567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++-. .++. ..++|+|++|+++
T Consensus 214 vg~~---~li~--~~~vk~GavVIDV 234 (295)
T PRK14174 214 IGKA---RFIT--ADMVKPGAVVIDV 234 (295)
T ss_pred cCcc---CccC--HHHcCCCCEEEEe
Confidence 9644 3333 2346999998876
No 322
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.56 E-value=0.24 Score=50.02 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5889 999999977 7899999999877 7777665321 23567888999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-.. ++. ..++|+|++|+++
T Consensus 208 vGk~~---~i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 208 IGKAE---LVK--GAWVKEGAVVIDV 228 (282)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEe
Confidence 98432 332 2457899988875
No 323
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.54 E-value=0.23 Score=50.22 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=55.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrd--s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... +.++.+.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 5789 999999976 789999999976 5 5667665321 236788899999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++.-... +. ..++|+|++|+++
T Consensus 209 ~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 209 AAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985432 22 2457999988875
No 324
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.52 E-value=0.6 Score=45.61 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=61.3
Q ss_pred hhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcC
Q 013877 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 92 ~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~ 170 (434)
.++-+.+-.|+.. -.++| ++|.|||.|.+|..=+..|.+. |-+|.|.-..- +...+.+....+..... ..
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r-~~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKG-NY 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeC-CC
Confidence 3333334445554 56678 8999999999999989999988 87777664432 23223333222322111 12
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
+. +-++.+++||.||.|...-+-+.+.+
T Consensus 79 ~~-~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DK-EFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred Ch-HHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 23 33578999999999988865554443
No 325
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.51 E-value=0.46 Score=45.88 Aligned_cols=82 Identities=17% Similarity=0.022 Sum_probs=56.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++......+.+...-+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 45788 9999999999999999999988 88887765543 3333444444422101 123444444 4999999
Q ss_pred eecchHHHH-HHH
Q 013877 185 LISDAAQAD-NYE 196 (434)
Q Consensus 185 avpd~a~~~-vl~ 196 (434)
+|+|....+ +++
T Consensus 79 At~d~~ln~~i~~ 91 (210)
T COG1648 79 ATDDEELNERIAK 91 (210)
T ss_pred eCCCHHHHHHHHH
Confidence 999988764 443
No 326
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.49 E-value=0.21 Score=51.68 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... +.+..+.+++||+||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999976 6899999999877 7777665332 13567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDV 285 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDV 285 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 2457899998876
No 327
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.46 E-value=0.17 Score=55.05 Aligned_cols=75 Identities=25% Similarity=0.193 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViLav 186 (434)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+...+.... ...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEecc
Confidence 667 8999999999999999999998 88888888765555555544432110 01122222 23568888888
Q ss_pred cchHH
Q 013877 187 SDAAQ 191 (434)
Q Consensus 187 pd~a~ 191 (434)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 86553
No 328
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.43 E-value=0.21 Score=52.10 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777765321 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEec
Confidence 985443 22 2457999988875
No 329
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.40 E-value=0.15 Score=53.87 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~----~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.+|||||+|.+|..+++.|.+..+ ..|.++++. +..+...+ .+.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 112234433 23333221 1101011111 1457888885 4699999
Q ss_pred eecchH-HHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAA-QADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++++.. +.+. +...|+.|+-|+.
T Consensus 79 ~tg~~~~~~~~---~~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPAREL---ILKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHH---HHHHHHCCCeEEE
Confidence 987642 2233 3344566765543
No 330
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.28 E-value=0.57 Score=48.02 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=41.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cCcccc--CCC-cC-CHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~--~~~-~~-~~~Ea~~~ADiViLa 185 (434)
+||+|||.|.+|.+.|..|... +.+-++.+.+.......-.+.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1122555555442222222221 111100 000 11 125678999999998
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
No 331
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=93.24 E-value=0.45 Score=48.45 Aligned_cols=118 Identities=8% Similarity=0.137 Sum_probs=77.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.||.|.| .|.-|..+-..+..- |-+++.|.....- ..+-.|... ..++.|+-+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 788888888888887 8888888765320 111246664 5678887765 7999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
....+.+++.... .-..+|++++||.-...++.....-..-.+-.+=||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999999886542 22347789999963322111111111223334458777654
No 332
>PRK05086 malate dehydrogenase; Provisional
Probab=93.18 E-value=0.48 Score=48.12 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh----HHHHHHcC--ccccCCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAG--FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s----~~~A~~~G--~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. .+... .+ .........++.+.++++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~-~~~~~~i~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSH-IPTAVKIKGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhc-CCCCceEEEeCCCCHHHHcCCCCEEEE
Confidence 68999999 999999999885421 113355555543 222 12111 01 11100001355678899999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+.-.
T Consensus 76 taG~ 79 (312)
T PRK05086 76 SAGV 79 (312)
T ss_pred cCCC
Confidence 9753
No 333
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.13 E-value=0.26 Score=52.90 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|.|+|+|..|.+.++-|++. |.+|++.++.. ...+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~-~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDP-DALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 99988766442 234445666765311 11234567789998886
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 334
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.08 E-value=0.17 Score=52.54 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcc---c-cCC-C---------c--CCHH-
Q 013877 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (434)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~---~-~~~-~---------~--~~~~- 173 (434)
|||.++|.|++|+++ +.-|.++ |++|+..+.. +...+...+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 589999999999976 6666666 8887655543 3345555555641 1 111 0 1 0112
Q ss_pred --hhhccCCEEEEeecchHHHHHHHHHHhcC
Q 013877 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (434)
Q Consensus 174 --Ea~~~ADiViLavpd~a~~~vl~eI~~~L 202 (434)
+.+..+|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999877666666665544
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.08 E-value=0.62 Score=43.28 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r 148 (434)
||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555443
No 336
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.07 E-value=0.48 Score=40.50 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---chhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecchHHH
Q 013877 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (434)
Q Consensus 118 G~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~a~~ 192 (434)
|+|++|..++..|...-+. .+++++...+++ ...+......... +.+.++++. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 134443333332 1222222222222 568888888 899999999998887
Q ss_pred HHHHHHHhcCCCCcEEE
Q 013877 193 DNYEKIFSCMKPNSILG 209 (434)
Q Consensus 193 ~vl~eI~~~Lk~g~iL~ 209 (434)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 44566444
No 337
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.07 E-value=0.63 Score=41.16 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 454443
No 338
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.04 E-value=0.68 Score=45.24 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCcCCHHhhh------ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~------~~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|....-. ..+..+.+ ...|+
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 57 8999999999999999988887 886 5544 44455678888888742000 01111211 24799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+-++.... .++.....++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 998885432 233334556666655533
No 339
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.99 E-value=0.43 Score=45.81 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
...|+. .+|.|||+|.+|..+|++|... |+ ++++.+
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD 59 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVD 59 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEe
Confidence 467888 9999999999999999999988 77 454444
No 340
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.95 E-value=0.47 Score=47.81 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=48.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-----C----ccccCCCcCCHH---hhhccC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIY---ETISGS 179 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G----~~~~~~~~~~~~---Ea~~~A 179 (434)
+||+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++. | .... +.+.. .-+.+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~---~~d~~~~~~dl~~~ 193 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFI---TADVLDVTYDLKEY 193 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEE---ES-GGGG-GG----
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEE---ecchhccccccccC
Confidence 5999999999987755443333 11223 34666666555555331 1 1110 12322 235678
Q ss_pred CEEEEeecch----HHHHHHHHHHhcCCCCcEEE--Eeccch
Q 013877 180 DLVLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (434)
Q Consensus 180 DiViLavpd~----a~~~vl~eI~~~Lk~g~iL~--~s~G~~ 215 (434)
|+|+++.-.. .=.++++.|.++|++|+.|+ .++|..
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9999997766 33579999999999999876 667763
No 341
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.90 E-value=0.6 Score=50.29 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-----ccc-------
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------- 164 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------- 164 (434)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-. ..+.....+ +..
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhccccccccccccccc
Confidence 4788 99999998 56778888888888 998876654321 111111121 100
Q ss_pred ------cCCCcCCHHhhhccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 165 ------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 165 ------~~~~~~~~~Ea~~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
.-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|++..+.
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 000134567899999999999998777643 55677777765577776654
No 342
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=92.87 E-value=0.3 Score=51.11 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCC-CcCCHH-hhhccCCEEEEee
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENG-TLGDIY-ETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~-~~~~~~-Ea~~~ADiViLav 186 (434)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+. ...+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999996 89999999887765 1346544433211 1111110 00000000 011222 2257899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|.....++.+.+ +.|..|++.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457777766653
No 343
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.84 E-value=0.28 Score=49.07 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.+...+.. ..+ .-....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 87 6888999876666666554432 111 001246899999999654
Q ss_pred H
Q 013877 191 Q 191 (434)
Q Consensus 191 ~ 191 (434)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
No 344
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.81 E-value=0.33 Score=49.28 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ ..++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 5889 999999977 7899999998765 4 355554321 2357788899999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||.++.-... +. ..++|+|++|+++
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDv 232 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDV 232 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985443 22 2457899988876
No 345
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.81 E-value=0.63 Score=48.31 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------CchhHHHHHHc----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~~---- 160 (434)
...+++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 357888 9999999999999999999998 87 55555443 11222111111
Q ss_pred C-cccc--CCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 G-FTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 G-~~~~--~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
. +... .... .+..+.++++|+||.|+-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1 1110 0011 123457789999999987665555555543
No 346
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=92.80 E-value=0.4 Score=48.70 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||-| ++..+++..+..- |.+|.+...++ ....+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999995 9999999999877 98887765432 122355666665321 146899999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
No 347
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.78 E-value=0.23 Score=50.18 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=55.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrd----s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~ADI 207 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREADF 207 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCCE
Confidence 6889 999999977 789999999987 4 5566655421 1357788999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||.++.-... +. ..++++|++|+++
T Consensus 208 VI~AvG~p~l---i~--~~~vk~GavVIDV 232 (286)
T PRK14184 208 LFVAIGRPRF---VT--ADMVKPGAVVVDV 232 (286)
T ss_pred EEEecCCCCc---CC--HHHcCCCCEEEEe
Confidence 9999964332 32 2346899988876
No 348
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.78 E-value=0.47 Score=46.53 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
.+.|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999998
No 349
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.76 E-value=0.41 Score=48.24 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=58.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|... +.+.++++++||+|++.+|+...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999888888899999998 9988774322211 1 2346664 45678899999999999886311
Q ss_pred ----HH-------HH-HHHHhcCCCCcEEE
Q 013877 192 ----AD-------NY-EKIFSCMKPNSILG 209 (434)
Q Consensus 192 ----~~-------vl-~eI~~~Lk~g~iL~ 209 (434)
.. .+ .+....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 01 11 35677889997544
No 350
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.73 E-value=0.59 Score=46.47 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=55.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++ +++.|+|.|.+|...++-++.. |.++++..+......+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 7899999999999999888877 8875555555444455665544321 111122357999999886
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 189 AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. .++...+.++++..+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 233444556676665533
No 351
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=0.33 Score=50.80 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc---hhHHHHHHcCccccCCCcCCHHhhhcc-CCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~~~~~~~~~Ea~~~-ADiVi 183 (434)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 467 9999999999999999999999 999877664322 2223344556643100 123344444 89887
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
No 352
>PLN00106 malate dehydrogenase
Probab=92.64 E-value=0.25 Score=50.63 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc--hhHHHHHHcCc-cccC-CCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~~-~~~~~~~Ea~~~ADiViL 184 (434)
.||+|||. |++|.++|..|... ++ ++.+.+.... ...+....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 5555544321 11121111111 1101 012345789999999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 854
No 353
>PRK08328 hypothetical protein; Provisional
Probab=92.63 E-value=0.66 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
...+++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 354
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.60 E-value=0.64 Score=47.59 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=86.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
.||+||| .|..|..+.+-|.+. . +++. .....+.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~-~~~s~~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELL-SIPEAKRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEE-EEecCCCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999888765 3 2432 22221111 1 112345567899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
...++.+++. +.|..|++.++- + .+.+ +++.+.|.--.. .|+..+. ... |+ ..+.
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 8888877764 357778877663 1 1111 677777855332 2333332 122 33 3344
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea 319 (434)
...+.-+++.=+..-|.. ++...-.+...+..||.+-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 444555444444444432 111112345556667777665444
No 355
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.59 E-value=0.36 Score=49.73 Aligned_cols=87 Identities=25% Similarity=0.216 Sum_probs=52.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEE--EEEecCCc---hhHHHHHHcCccccCCCc--CCHHhhhccCCEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVV--KVGLRKGS---RSFAEARAAGFTEENGTL--GDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~V--ivg~r~~~---~s~~~A~~~G~~~~~~~~--~~~~Ea~~~ADiVi 183 (434)
.+|+|||. |..|..+.+-|.++ ++.+ +....... +... -.| . +-.+ .+..+ ++++|+||
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~-~--~l~~~~~~~~~-~~~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAG-K--NLRVREVDSFD-FSQVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCC-c--ceEEeeCChHH-hcCCCEEE
Confidence 68999995 99999999999876 5521 12332211 1111 111 1 0001 12233 47899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++|.....++.+++. +.|..+++.+|.
T Consensus 72 la~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 72 FAAGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred EcCCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 9999776666665543 357777777663
No 356
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.56 E-value=0.97 Score=47.29 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=89.3
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCcE--EEEEecCCchhHHHHHHcCccccCCCcCCH-H-hhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV--VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLr-ds~~~~~~G~~--Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-Ea~~~ADiViLa 185 (434)
++|||||+ |..|..+.+.|. +. .+. ..+.... +++..+- ..|......+.+. + +..++.|++|.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss-~~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivffa 71 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFST-SQLGQAA--PSFGGTTGTLQDAFDIDALKALDIIITC 71 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEc-hhhCCCc--CCCCCCcceEEcCcccccccCCCEEEEc
Confidence 58999997 999999999888 44 442 1122211 1111111 1111000012222 2 356789999999
Q ss_pred ecchHHHHHHHHHHhcCCCC--cEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g--~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
.+.....++..... +.| ++|++.++.- ...+ +|-.+-|---...+..... .|+.. |
T Consensus 72 ~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~---------Rmd~--dVPLVVPeVN~~~i~~~~~-------~gi~~-i 129 (366)
T TIGR01745 72 QGGDYTNEIYPKLR---ESGWQGYWIDAASSL---------RMKD--DAVIILDPVNQDVITDGLN-------NGIRT-F 129 (366)
T ss_pred CCHHHHHHHHHHHH---hCCCCeEEEECChhh---------hcCC--CCCEEeCCcCHHHHHhHHh-------CCcCe-E
Confidence 99886666665543 467 6677777641 1122 3444556554444433212 24533 2
Q ss_pred eecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 264 av~qdvsg~a~e~a~-~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
+ ..+.+--..-+++ .|....|-.+++-||+.. +||.+...++-+.+...
T Consensus 130 a-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 130 V-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred E-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 2 3444544444443 444445555555554332 67777766665555544
No 357
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=0.32 Score=52.07 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHc--CccccCCCcC-CHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~-~~~Ea~~~ADiVi 183 (434)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 999876654322 222333344 33321 11 2345667899999
Q ss_pred Ee--ecc
Q 013877 184 LL--ISD 188 (434)
Q Consensus 184 La--vpd 188 (434)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 86 555
No 358
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.53 E-value=0.56 Score=50.02 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
++ ++|.|||.|..|.+.|..|++. |++|++..+... ...+.+++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 67 9999999999999999999998 998877765421 12455667776431111
Q ss_pred -c---CCHHhhhccCCEEEEeecc
Q 013877 169 -L---GDIYETISGSDLVLLLISD 188 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavpd 188 (434)
+ ...++.....|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1234445578999998854
No 359
>PLN03075 nicotianamine synthase; Provisional
Probab=92.48 E-value=1.2 Score=45.42 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-----Ccccc-CCCcCCHHhh---hccC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEE-NGTLGDIYET---ISGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G~~~~-~~~~~~~~Ea---~~~A 179 (434)
.. ++|..||+|..|.+-..-++...+ +- .+++.+.++...+.|++. |+... .=...|..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999887754433333211 11 346788777666666542 22100 0001233222 3578
Q ss_pred CEEEEeec----chHHHHHHHHHHhcCCCCcEEEE--eccc
Q 013877 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (434)
Q Consensus 180 DiViLavp----d~a~~~vl~eI~~~Lk~g~iL~~--s~G~ 214 (434)
|+|++.+= .....++++.+...|+||.++++ +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999951 24556899999999999998764 4553
No 360
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.45 E-value=0.81 Score=47.32 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHH-----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (434)
...|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 77 444443221 111111111
Q ss_pred cCcccc--CCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 160 ~G~~~~--~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
..+..+ .... .+..+.++++|+||.++-+.....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 011110 0111 123567899999999987766665666543
No 361
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.41 E-value=0.31 Score=52.15 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.+.+ +||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. +. +-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~-~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD-EDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch-hccccCCEEE
Confidence 3456 9999999999999999999999 99998887543221 1222345554322211 12 5677899998
Q ss_pred Ee
Q 013877 184 LL 185 (434)
Q Consensus 184 La 185 (434)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 75
No 362
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.37 E-value=0.56 Score=52.02 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=51.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (434)
-++ ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...-+
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 357 9999999999999999999998 999888765431 1234455666532111
Q ss_pred C----cCCHHhhhccCCEEEEeecc
Q 013877 168 T----LGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 168 ~----~~~~~Ea~~~ADiViLavpd 188 (434)
+ ..+..+.....|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 12355666778999998853
No 363
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.35 E-value=0.39 Score=52.26 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------chhHHHHHHcCcccc-
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (434)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+.+ ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999998 99887765321 123456777786421
Q ss_pred CCCc-C--CHHhhhccCCEEEEeecch
Q 013877 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (434)
Q Consensus 166 ~~~~-~--~~~Ea~~~ADiViLavpd~ 189 (434)
+... . +.++.-...|+||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2333445689999998643
No 364
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.94 Score=45.53 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc---cCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~---~ADiVi 183 (434)
+| ++|.|+|.|.+|...++-++.. |. +|++..+. .+..+.+++.|.... +....+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999888887 87 45544444 455788888886420 100112333322 379999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
-++.... .++.....++++..++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9987532 333444556777665543
No 365
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.34 E-value=0.31 Score=49.67 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecC--CchhHHHHHHcCc-cccCC-CcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~--~~~s~~~A~~~G~-~~~~~-~~~~~~Ea~~~ADiViL 184 (434)
+||+|||. |++|.++|..|... ++ ++++.+.. .....+....... ..... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 45444432 1122222221111 11000 01234688999999998
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 854
No 366
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.29 E-value=0.64 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (434)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
No 367
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.09 E-value=0.44 Score=49.23 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=54.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EE-ecCCchhHHHHHHcCccccCCCcCC-HHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vi-vg-~r~~~~s~~~A~~~G~~~~~~~~~~-~~Ea~~~ADiViL 184 (434)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 6899999 578899999888876 55 222 11 2222222211 12110 0111 1245588999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++.++.. +.|..|++.++.
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999988777777643 368888877763
No 368
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.05 E-value=0.48 Score=48.56 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=54.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCch-hHHHHHHcCc------c--ccCCCcCC-HHhhhccC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAGF------T--EENGTLGD-IYETISGS 179 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~-s~~~A~~~G~------~--~~~~~~~~-~~Ea~~~A 179 (434)
+||+|||+ |-+|..+++.|.+. . +++....+.... .........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 47999995 99999999988765 4 465444333211 0111111111 0 00000111 12355789
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+|++|+|.....++.+.+. ..|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999999998888776553 357767766663
No 369
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.04 E-value=0.12 Score=47.10 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=50.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+..+| +||++||+ +.+ ++..|++. +.++.+.++.... ... ...++. ..+.++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 333 77778766 7888888776322 111 112232 35678999999998865
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
-. ...-..++.|..+.+++..++
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEE
Confidence 33 223345555555555454443
No 370
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.90 E-value=0.29 Score=50.35 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
-+| .+++|+|+|..|.|.+++.|.. |-.-|++.|.+++..++|++.|++.
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 356 8999999999999999999998 8766789998888899999999974
No 371
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.85 E-value=0.55 Score=47.86 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHH----HcC--ccccCCCcCCHHhhh
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEAR----AAG--FTEENGTLGDIYETI 176 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~----~~G--~~~~~~~~~~~~Ea~ 176 (434)
|+| +||++||=| ||+.++...-..- |+++.+...+ ++.-++.|+ +.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999977 7888887776666 9988876443 333344443 345 332 46899999
Q ss_pred ccCCEEEEeecc
Q 013877 177 SGSDLVLLLISD 188 (434)
Q Consensus 177 ~~ADiViLavpd 188 (434)
++||+|..=+..
T Consensus 220 ~gADvvyTDvWv 231 (310)
T COG0078 220 KGADVVYTDVWV 231 (310)
T ss_pred CCCCEEEecCcc
Confidence 999999876553
No 372
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.76 E-value=0.53 Score=48.15 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=54.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--hhHHHHHHcCccccCCCcCCHH-hhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~-Ea~~~ADiViL 184 (434)
+||+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7999999 689999999999886 65 3333333211 2111 112111 012221 33478999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|.....++.+.+. +.|..|++.++
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCc
Confidence 999888888776653 45777776655
No 373
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.75 E-value=1 Score=45.22 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH-hhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~-Ea~~~ADiViLavp 187 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+.. +.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888877777 8887655554 44578899999753 22211 11234688887766
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. +.+....+.++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3565666678887766543
No 374
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.64 E-value=2.3 Score=44.57 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCcE---EEEEecCCchhHHHHHHcCccccCCCcCC-H-HhhhccCCEEE
Q 013877 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVL 183 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~-nLrds~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~-~Ea~~~ADiVi 183 (434)
|.+|||||. |..|.-+.+ -|... .+. +.. ..+ +++-..- ..|.-....+.+ . .+..+++|+||
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss-~~sg~~~--~~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FST-SQAGGAA--PSFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecc-hhhCCcc--cccCCCcceEEecCChhHhcCCCEEE
Confidence 478999996 999999997 55544 443 433 222 1111111 111100001111 1 23457899999
Q ss_pred EeecchHHHHHHHHHHhcCCCC--cEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g--~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+++|.....++.+++.. .| .+|++.++.- .. +-+|..+-|---...+...-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f---------R~--~~dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAASTL---------RM--KDDAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChHH---------hC--CCCCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99999877777776543 56 5577776641 11 115666777665554432111 23333
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
|+ +.+.+..+.-+++.=+...|.. +++-+ .-..+||++...++-+.+...
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHHH
Confidence 33 4555555555555545555543 22222 223467887776665555443
No 375
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.37 E-value=1 Score=47.46 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=54.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
..|-|+|+|.+|..+++.|++. |+++++.... + .+...+.|...-.|...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5699999999999999999988 8877665543 1 23333344322112222322 13668999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
|+...-..-.....+.|+ +++..+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876653332223334443 455433
No 376
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=91.35 E-value=0.59 Score=48.17 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| +||++||-+ ++..|++..+..- |.+|.+...+. +...+. +++.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999975 8888988888876 88877654331 122222 334563210 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 377
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.34 E-value=0.71 Score=46.01 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999999 99988777764332 2222234422111122 34677899999998764
No 378
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.33 E-value=0.71 Score=45.23 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=53.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHH---HHHHc-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~~- 160 (434)
.+.+++ .+|.|||+|-+|..+|.+|... |+ ++++.++.. .+... ...+.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 444333210 01111 11111
Q ss_pred -Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. .+... .+..+.++++|+||.++-+......+.+..
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 1110 01111 124567889999999987766666666543
No 379
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.32 E-value=1.4 Score=43.58 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=63.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH----HcCccccCCCcCCHHhhhc---cCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~Ea~~---~AD 180 (434)
+.| ++|.=|||| |+.++.-|.+. |.+| .|.|-.++..+.|+ +.|+.. +-...+.+|++. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 778 999999998 45777777777 8886 57777677666665 445542 222345667665 578
Q ss_pred EEEEe-----ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLa-----vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+.+ +||... ++..+...+|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 88764 554433 777888999999887766
No 380
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.31 E-value=0.73 Score=44.24 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=59.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavp 187 (434)
|||+||| -|..|..+++-..+. |++|....|+.++.... .+......-+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6899999 589999999999999 99998777875543221 233221111233 3467788899999865
Q ss_pred ch------HHHHHHHHHHhcCCC-Cc-EEEEeccch
Q 013877 188 DA------AQADNYEKIFSCMKP-NS-ILGLSHGFL 215 (434)
Q Consensus 188 d~------a~~~vl~eI~~~Lk~-g~-iL~~s~G~~ 215 (434)
.. .+.+..+.+...++. |. -+.++.|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333334455544 33 255566653
No 381
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.17 E-value=0.69 Score=46.86 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=54.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+.. +..+..|.+.... +.++++.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 78999999887650 0002355543221 24678889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vG~p~~---i~--~~~ik~GavVIDv 228 (287)
T PRK14181 208 IGVPLF---IK--EEMIAEKAVIVDV 228 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985432 22 2457899998876
No 382
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=91.12 E-value=0.83 Score=46.62 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch--hH----HHHHHcC-ccccCCCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~~~~~~~~~Ea~~~ 178 (434)
.++| +||++||- +++..+++..+..- |.+|.+...+.-. .. +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 68999999988877 9888766544311 11 2233344 222 4689999999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
No 383
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=91.08 E-value=0.84 Score=46.15 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=40.1
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ccccC-CCcCCHHhhhccCCEEEEeec
Q 013877 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEEN-GTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 116 IIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~-~~~~~~~Ea~~~ADiViLavp 187 (434)
|||.|.+|.++|..|... ++ ++.+.+.........+.+ +. +...+ ....+..+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 555555443333333332 11 11000 001234578899999999754
No 384
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.05 E-value=0.62 Score=48.57 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=55.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------chhHHHHH---Hc-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---AA- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~---~~- 160 (434)
...|++ .+|.|||+|-.|..++.+|... |+ ++.+.++. . .+....++ +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 55444332 0 01111111 11
Q ss_pred -Ccc--ccCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~--~~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+. ...... .+..+.++++|+|+-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 134568899999999988877777777654
No 385
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.99 E-value=1.5 Score=44.77 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cCCHHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~Ea~~~ADiViLav 186 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 56 8999999999999999988887 88876655554454556667776320 000 001222233579999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.... .+++....++++..++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6422 3334445566666554
No 386
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.90 E-value=1.7 Score=46.10 Aligned_cols=172 Identities=19% Similarity=0.117 Sum_probs=98.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHH--HHHc--Ccccc----------------CCCc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE--ARAA--GFTEE----------------NGTL 169 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~--A~~~--G~~~~----------------~~~~ 169 (434)
|.+|-|+|.|..+--+|..++.. +- +|=+..|.+.++... +.+. +.... +...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999876 33 455556654444322 2222 21100 1113
Q ss_pred CCHHhhhccCCEEEEeecchHHHHHHHHHHh-cCCC-CcEEEEeccchhhhhhccc-ccCCCCccEEEe----------c
Q 013877 170 GDIYETISGSDLVLLLISDAAQADNYEKIFS-CMKP-NSILGLSHGFLLGHLQSMG-LDFPKNIGVIAV----------C 236 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~-~Lk~-g~iL~~s~G~~i~~~~~~~-i~~~~di~VI~v----------~ 236 (434)
.+.+++..+=|.+|||||-++..+|+++|-+ .|+. .++|.++..|.-+.+.+.. -....++.||.. .
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 4567778888999999999999999987643 2322 2356677665422211100 022236666643 2
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhc
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEY 298 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~-~iettf~~E~ 298 (434)
...|-.+.-...++ ..++. ..+.....++....++..+|-.- .+.+-+..|.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAES 207 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhh
Confidence 23343443222222 22233 23444467777789999999753 4555455554
No 387
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=90.80 E-value=0.81 Score=47.23 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+.-.+. ....+ .++..|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999888876 88877654332 11222 2333453210 146899999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
++||+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 388
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.79 E-value=1.2 Score=46.50 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+++..-.. ... ...+. +.+..|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 3688 99999998 56777888889888 9998776544222 111 11221 35788999
Q ss_pred ccCCEEEEeecchHHHH-HHHHHHhcCCCCcEEEE
Q 013877 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~-vl~eI~~~Lk~g~iL~~ 210 (434)
++||+|++++.-....+ -++.+...+++ .+|++
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887764 35567766654 35554
No 389
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.73 E-value=0.84 Score=46.93 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=53.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHH-HcCcc-----c---cCCCc--CCHHhhhcc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFT-----E---ENGTL--GDIYETISG 178 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~-----~---~~~~~--~~~~Ea~~~ 178 (434)
.||+|+| .|.+|..+++.|.+. . +++....+..+..-+... ..++. . .+-.+ .+. +.+.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7899998 899999999988865 3 355433233211110010 01110 0 00001 133 44578
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|+|++++|.....++.+.+. +.|..+++.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFA---KAGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHH---HCCCEEEECCc
Confidence 999999999987777765543 34666666655
No 390
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.64 E-value=1.6 Score=45.30 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=50.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhh-hccCCEEEE
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea-~~~ADiViL 184 (434)
|.||+|||. |--|.-+.+-|... ..+++.....+..+-...... .|.....-...+.+++ ..++|+||+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 479999994 66666666666543 133543332211010011111 1221000012233443 445899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877543 4555776665
No 391
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.47 E-value=0.47 Score=48.99 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=54.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEec--CCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~---~Vivg~r--~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViL 184 (434)
.+|+|||. |..|.-+.+-|.++ .+ ++..... ...+.....-. ... +.+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEE
Confidence 78999996 99999999988874 33 4332221 11222221000 111 2233333 268999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++.++.. +.|..|++.++.
T Consensus 73 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEAT---NAGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHH---HCCCEEEECChH
Confidence 999987777776653 358888877663
No 392
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=90.42 E-value=1.6 Score=44.40 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHH-HHHcCccccCCCcCCHHhhhccCC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
.++| .||++||- ++...+++..+..- |.+|.+.....- ...+. +++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4778 89999997 78999999988877 888776543321 11121 555664321 1468999999999
Q ss_pred EEEEe
Q 013877 181 LVLLL 185 (434)
Q Consensus 181 iViLa 185 (434)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 393
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.42 E-value=0.91 Score=50.42 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
.| ++|+|||.|..|.+.|..|++. |++|+|..+... +..+.+++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 999888765321 12344556675421111
Q ss_pred -c---CCHHhhhccCCEEEEeec
Q 013877 169 -L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavp 187 (434)
+ .+.++.....|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1 134455567899999874
No 394
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.38 E-value=0.74 Score=44.17 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=46.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCC----HHhhh-cc
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~Ea~-~~ 178 (434)
+..++ ++|.|+|. |.+|..+++.|.+. |++|++..|..++....... .++....+.+.+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45556 99999995 99999999999998 99987766654332111111 122111011222 23445 57
Q ss_pred CCEEEEeecc
Q 013877 179 SDLVLLLISD 188 (434)
Q Consensus 179 ADiViLavpd 188 (434)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 395
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.23 E-value=0.77 Score=49.01 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 467 9999999999999999999999 999888764322111 1222222221 1 1122456678999887
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 76 S 76 (468)
T PRK04690 76 S 76 (468)
T ss_pred C
Confidence 5
No 396
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.18 E-value=0.87 Score=46.36 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=54.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|.|||-+ ..|..+|.-|.+. .++.+..|.+.... ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999976 7899999988765 00002356554321 2357788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... +. ..++|+|++|+++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEec
Confidence 9874332 22 2457899988875
No 397
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.02 E-value=1.4 Score=43.00 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.+ ++|.-||+|+ | .++..+.+. |...+++.+.++...+.|++. ++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777766666655542 3310 0000000014799887
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665555667888899999999887754
No 398
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.97 E-value=0.77 Score=52.34 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+|++.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999999 99987766543333344455677542 12233566789998864
No 399
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=89.94 E-value=0.89 Score=46.85 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhH----HHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..|++..+..- |.+|.+...+. .... +.+.+.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999987 6788888888776 88877654331 1111 22334463211 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|..-
T Consensus 224 ~~aDvVyt~ 232 (334)
T PRK01713 224 KGVDFVHTD 232 (334)
T ss_pred CCCCEEEEc
Confidence 999999974
No 400
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=89.79 E-value=1 Score=46.25 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=53.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCcc---------cc------CCC---cC---
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------~~~---~~--- 170 (434)
||||+|+|.+|+.+.+.|.++- .+.+++|...++. +.+......+++-+ .+ ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565433432 23333444333211 00 000 11
Q ss_pred CHHhh---hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 171 ~~~Ea---~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~ 119 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLF 119 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEe
Confidence 23221 1478999999998877665543 45667655544
No 401
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=89.73 E-value=0.59 Score=48.22 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViL 184 (434)
|++|||||.|-.|..+++.+++. |++|++.+....... ....+..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 999877655322211 1112222210 1223 5567788998743
No 402
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.70 E-value=0.5 Score=49.38 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC-CCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~Ea~~~ADiViL 184 (434)
+++|||||-|-.|.-|+..-+.- |+++++.+.. +.+-....+......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 38999999999999999988887 9998765432 3222222222222100 001136678888998853
No 403
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.63 E-value=1.1 Score=47.23 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHH--cCccccCCCcCCHHhhhccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+++ ++|.|+|.|..|.+.|+-|.+. |++|.+.+..... ..+..++ .|+....+ ....+...+.|+||.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 456 8999999999999999999999 9988766544322 1222222 36543111 112334568999998
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 74 s 74 (445)
T PRK04308 74 S 74 (445)
T ss_pred C
Confidence 5
No 404
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.61 E-value=0.74 Score=48.10 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHH----HHH-HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
||.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.++++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEEC
Confidence 589999999999999999999 9998776654332111 122 2476531 11224567889988775
No 405
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=89.56 E-value=2.8 Score=42.52 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ccccCC-CcCCHHhhhcc
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~-~~~~~~Ea~~~ 178 (434)
..++. .||.|+|.|+.|.|.|..+..+ |+ ++.+.+-...+..-++.+.. |...-. ....--.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34555 8999999999999999998877 66 44333333222222222221 221000 01112245678
Q ss_pred CCEEEEeecchHH------------HHHHHHHHhcC---CCCcEEE-Eeccchh-hhhhcccccCCCCccEEEeccCCCh
Q 013877 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 179 ADiViLavpd~a~------------~~vl~eI~~~L---k~g~iL~-~s~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
+++||+..-..+. .++++.|.|.+ .|+++|. .+..+.+ .|..-..-.+|++ +||..-.|--.
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnLDs 167 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNLDS 167 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCccH
Confidence 9999998654332 24555666543 6777765 4444443 2332222345555 66655554433
No 406
>PRK06392 homoserine dehydrogenase; Provisional
Probab=89.55 E-value=0.82 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (434)
++|+|||+|++|..+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 3899999999999999999773
No 407
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.46 E-value=2.2 Score=43.07 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrd-s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 36 899999999999988877765 3 3 356555544 34456666655431 1122222 4799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++........+++....++++..+++
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 88743233455566667888776553
No 408
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.44 E-value=4.4 Score=41.96 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcE-EEEEe--cCCchhHHHHHHcCc--cccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGL--RKGSRSFAEARAAGF--TEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~-Vivg~--r~~~~s~~~A~~~G~--~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|||+| .|..|.-+.+.|.++ .+-+. +.+.. |+..+. ...-.|. ...+ .+. .....++.|++|.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~--~~~f~~~~~~v~~-~~~-~~~~~~~~Divf~~ 73 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKK--YIEFGGKSIGVPE-DAA-DEFVFSDVDIVFFA 73 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCc--cccccCccccCcc-ccc-cccccccCCEEEEe
Confidence 7899998 699999999999886 11222 22222 221121 1111222 1100 001 12345589999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.+.....++.++.. +.|.+|++.++.
T Consensus 74 ag~~~s~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 74 AGGSVSKEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred CchHHHHHHHHHHH---HcCCEEEeCCcc
Confidence 99888877777654 467888877764
No 409
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=89.43 E-value=1.1 Score=46.31 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999997 7888888888776 88876654332 11122 2333453210 146889999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 410
>PRK08223 hypothetical protein; Validated
Probab=89.38 E-value=1.9 Score=43.70 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 467888 9999999999999999999998
No 411
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.17 E-value=1.5 Score=46.01 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
...|+. .+|.|||+|-.|..+|++|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 366788 9999999999999999999988
No 412
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=89.09 E-value=1.4 Score=45.61 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhH----HHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.++.+...+. .... +.+++.|.... ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999986 7899999888876 88877654332 1112 23344563221 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999875
No 413
>PLN02342 ornithine carbamoyltransferase
Probab=89.03 E-value=1.3 Score=45.99 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcC---ccccCCCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~~~~~~~~~Ea~~~ 178 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+...+. ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4788 999999975 6788888877776 88876654332 22334455544 232 5688999999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
No 414
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.00 E-value=1.5 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhh------cc-CCE
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~------~~-ADi 181 (434)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 5889997 99999999999998 999988888644321 1222110111222 33455 45 899
Q ss_pred EEEeecc
Q 013877 182 VLLLISD 188 (434)
Q Consensus 182 ViLavpd 188 (434)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988874
No 415
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.85 E-value=1.1 Score=46.68 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=54.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCcE---EEEEe--cCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrd-s~~~~~~G~~---Vivg~--r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.||||||. |..|.-+.+-|.+ . .++ +.... +...+....... ..... ..+.+ ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999996 9999999998874 4 444 32222 122222211111 11110 12333 4478999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++..+.. +.|..|++.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777776643 468888877663
No 416
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.65 E-value=0.59 Score=48.10 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
|++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 47899999999999999999998 99998877653
No 417
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.52 E-value=1.2 Score=45.55 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 013877 113 QIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds 133 (434)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
No 418
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.41 E-value=1 Score=43.94 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-----hccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-----~~~ADiV 182 (434)
.|++|||.||+|.-+.-.+.++ |- .+.||.++.+.-...|.+.|+.... ...+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999988777766 42 5678888888878888888876311 111111 2345699
Q ss_pred EEeecchHHHHHHHHH
Q 013877 183 LLLISDAAQADNYEKI 198 (434)
Q Consensus 183 iLavpd~a~~~vl~eI 198 (434)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988887654433
No 419
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=88.31 E-value=2.1 Score=47.64 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EE--EEEecCCc------hhHHHHHHc--Ccc--ccCC-CcCCHHh
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EENG-TLGDIYE 174 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~V--ivg~r~~~------~s~~~A~~~--G~~--~~~~-~~~~~~E 174 (434)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. ..+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999999 87 33 22232222 234555551 211 1011 1345778
Q ss_pred hhccCCEEEEeecchHHHH
Q 013877 175 TISGSDLVLLLISDAAQAD 193 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~ 193 (434)
+++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999888665543
No 420
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.29 E-value=1.9 Score=43.63 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
+.++. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 15 ~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 15 KKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 55667 8999999999999999999988 87 454444
No 421
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.23 E-value=4.3 Score=38.21 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 556 89999996 89999999999988 99987766653
No 422
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=88.19 E-value=2.1 Score=43.67 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.++| +||++||- +++..|++..+..- |+++.+...++-.... . ..+.. ..++.|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999998887 8887765443211000 0 01222 568999999999987
Q ss_pred Ee
Q 013877 184 LL 185 (434)
Q Consensus 184 La 185 (434)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
No 423
>PRK01581 speE spermidine synthase; Validated
Probab=88.15 E-value=3.1 Score=43.76 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---------CccccCCC----cCCHHhhh
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYETI 176 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~~----~~~~~Ea~ 176 (434)
+.++|.|||+| .|.+...-|+.. +..-++..+.++...+.|+.. ++. +.. ..|..+.+
T Consensus 150 ~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHHH
Confidence 33899999998 455544444433 333345566667777777752 111 000 23333332
Q ss_pred ----ccCCEEEEeecchHH--------HHHHHHHHhcCCCCcEEEEecc
Q 013877 177 ----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 177 ----~~ADiViLavpd~a~--------~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 346999999886422 4577788999999998765444
No 424
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.13 E-value=0.95 Score=46.58 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecC--CchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEe
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~---Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLa 185 (434)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 663 2222222 122221 112110 01111 2345889999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988887776553 457777777663
No 425
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=88.09 E-value=1.2 Score=46.99 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+.... ....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIYI---GHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEeC---CCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 999877664433333344555765411 1223456789998874
No 426
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.07 E-value=1.3 Score=46.60 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHH--cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-.|.|||+|-.|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+|++.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999998 9998776654322 2222333 26543100 1124556789988774
No 427
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=88.05 E-value=5.6 Score=33.04 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH----HcCccccCCCcCCH----HhhhccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~----~Ea~~~AD 180 (434)
.+ ++|.-||+|.= .++..+.+... +.+| ++.+.+....+.++ ..+.....-...+. ....+..|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~~----~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLVP----NGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHCC----CceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999993 33444443310 2244 56666554444443 23321000001121 12335789
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+|++.-++....++++.+.+.|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999987653
No 428
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=88.04 E-value=3.3 Score=42.84 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHH----HHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.++| .||++||- .++..+++..+..- |.+|.+...+. ....+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 47888888888776 88877654332 1222333 23453210 1468899999
Q ss_pred cCCEEEEe
Q 013877 178 GSDLVLLL 185 (434)
Q Consensus 178 ~ADiViLa 185 (434)
++|+|..-
T Consensus 222 ~aDvvy~~ 229 (338)
T PRK02255 222 DADFVYTD 229 (338)
T ss_pred CCCEEEEc
Confidence 99999983
No 429
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.02 E-value=3.9 Score=42.54 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc-CCHHhhh------ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~Ea~------~~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.++++..+......+.|++.|+..-+... .+..+.+ ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 46 8999999999999999888887 887555544445568888888874211101 1222222 24799
Q ss_pred EEEeecchHH-----------HHHHHHHHhcCCCCcEEEE
Q 013877 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 182 ViLavpd~a~-----------~~vl~eI~~~Lk~g~iL~~ 210 (434)
||-++-.... ...+++....+++|-.|++
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 9998875421 1345555566777766554
No 430
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=87.90 E-value=1.8 Score=45.76 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.2
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcC
Q 013877 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 107 ~~~g~kkIgIIG~-----G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
.++| +||+|+|- | ++..+++..+..- |.+|.+.-.++ +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 89999985 4 6678888887776 88887765432 222233 344553210 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 431
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.82 E-value=2.2 Score=47.62 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (434)
-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 356 8999999999999999999998 998887765321 1134445566543211
Q ss_pred Cc----CCHHhhhccCCEEEEeecc
Q 013877 168 TL----GDIYETISGSDLVLLLISD 188 (434)
Q Consensus 168 ~~----~~~~Ea~~~ADiViLavpd 188 (434)
+. .+.++.....|.||+++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 11 1234444569999998753
No 432
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.81 E-value=6 Score=36.97 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhh-----hccCCE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea-----~~~ADi 181 (434)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 356 8999999999999999888887 8887655544 344556666654210 1001122222 246899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+.+++.. ..+..+...|+++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2333444555565555433
No 433
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.79 E-value=3.7 Score=42.35 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC---HHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~---~~Ea~~~ADiViL 184 (434)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ +.+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 46 8999999999999999988888 88876665544444667777776320 0 011 1222345799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
++.... .+......++++..++
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEE
Confidence 886432 2333334555655554
No 434
>PRK07411 hypothetical protein; Validated
Probab=87.65 E-value=3.4 Score=43.30 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=54.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------chhHHHHHH---c-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEARA---A- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~~---~- 160 (434)
...|+. .+|.|||+|-.|..++++|..+ |+ ++++.+.. . .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 76 33333221 0 011111111 1
Q ss_pred -Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. ....+ .+..+.+.+.|+||.|+-+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 00111 124567899999999988777777776643
No 435
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.63 E-value=2.2 Score=45.71 Aligned_cols=74 Identities=26% Similarity=0.236 Sum_probs=48.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~ 166 (434)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3456 8999999999999999999998 998877754321 112344556764311
Q ss_pred CC-c---CCHHhhhccCCEEEEeec
Q 013877 167 GT-L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 167 ~~-~---~~~~Ea~~~ADiViLavp 187 (434)
++ + .+.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 1 122334456899999875
No 436
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=87.61 E-value=1.9 Score=44.59 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||= +++..+++..|... .|.++.+...+ +....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988876533 17777665433 2233455555554321 146889999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 437
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.60 E-value=1.7 Score=44.31 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=53.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+.... .+..|.+... + +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs---~----------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHS---R----------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999977 7899999988653000 0235655422 1 23567889999999998
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+--.. ++. ..++|+|++|+++
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDv 232 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDV 232 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEc
Confidence 87433 222 2457899988875
No 438
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=87.58 E-value=2 Score=39.08 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---HhhhccCCEEEEeecch
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea~~~ADiViLavpd~ 189 (434)
++.|+|.|..|..++..|++. |++++-..+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998765555432211 111245543 2233 33344568899999754
Q ss_pred HH-HHHHHHHHh
Q 013877 190 AQ-ADNYEKIFS 200 (434)
Q Consensus 190 a~-~~vl~eI~~ 200 (434)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
No 439
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.52 E-value=1.6 Score=46.13 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=51.9
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--CccccCCCcCCHHhh
Q 013877 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (434)
Q Consensus 108 ~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~Ea 175 (434)
++| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3455566677776 9898766543 23333322 1332 5689999
Q ss_pred hccCCEEEEeecchHHHHH
Q 013877 176 ISGSDLVLLLISDAAQADN 194 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~v 194 (434)
++.||+|++++-.+...++
T Consensus 374 ~~~aDaivi~tew~ef~~~ 392 (414)
T COG1004 374 LKGADAIVINTEWDEFRDL 392 (414)
T ss_pred HhhCCEEEEeccHHHHhcc
Confidence 9999999999998887754
No 440
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.48 E-value=1.9 Score=45.95 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 3467 8999999999999999999998 9988877653
No 441
>PRK13984 putative oxidoreductase; Provisional
Probab=87.36 E-value=2 Score=47.14 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=48.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+. +..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 998877654321 12344556665421111
Q ss_pred -c---CCHHhhhccCCEEEEeec
Q 013877 169 -L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavp 187 (434)
+ .+.++.-...|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 123444457899999986
No 442
>PLN02477 glutamate dehydrogenase
Probab=87.27 E-value=1.1 Score=47.43 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 46889 9999999999999999999988 98876
No 443
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.22 E-value=1.8 Score=45.44 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ ++|.|||+|-.|.+.++-|++. |++|.+.+...... .+. .+.|+.... -....+.++..|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 346 8999999999999999988888 99887655432221 122 233654311 01223456778876654
No 444
>PLN02527 aspartate carbamoyltransferase
Probab=87.15 E-value=2 Score=43.82 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||-+ ++..+++..+.... |.++.+...+. ....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899988876531 67776654322 233455555554321 146899999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999984
No 445
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.07 E-value=5.2 Score=38.02 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++.|+|. |-+|.++|+.|.+. |.+|++..+.
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~ 40 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNS 40 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCC
Confidence 567 99999995 79999999999998 9988766554
No 446
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.95 E-value=4.5 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC------H----Hhhhc-cCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD------I----YETIS-GSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~------~----~Ea~~-~AD 180 (434)
.+++|+|+|-+|.|-.++++.. |-..|++.+.+....+.|++.|.+. +.+ + .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999988 7766788887777789999999863 222 2 22333 689
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
..|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 9998887654
No 447
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.90 E-value=3.3 Score=44.27 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| ++|.|||-|.++..=++.|.+. |-+|+|.-..-.+......+.| +...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 46889 9999999999999999999988 8777665433222222222333 2211111 12 345689999999
Q ss_pred eecchHHHHH
Q 013877 185 LISDAAQADN 194 (434)
Q Consensus 185 avpd~a~~~v 194 (434)
||.|....+-
T Consensus 79 at~d~~~n~~ 88 (457)
T PRK10637 79 ATDDDAVNQR 88 (457)
T ss_pred CCCCHHHhHH
Confidence 9999877643
No 448
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=86.86 E-value=2 Score=45.85 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| +||++||- +++..+++..+...+ |.+|.+...++ +...+.+.+.|.... ...+++|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3788 99999998 488999998876421 77776654332 223345555564321 146899999999
Q ss_pred CEEEEee
Q 013877 180 DLVLLLI 186 (434)
Q Consensus 180 DiViLav 186 (434)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999844
No 449
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=86.68 E-value=1.2 Score=45.14 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCCchhHHHHHHcC-----ccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.-..|+|.|.|+..+...-.+. .. =.+|.+++|....+.+.|...- +..+-....+.+++++.+|+|+-+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a 214 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA 214 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence 3578999999999887665543 11 1278899998887777776321 111111245678999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccchhh
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
++...-. + ....++||+.|-.+.+|..+
T Consensus 215 tlstePi-l---fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 215 TLSTEPI-L---FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred cccCCce-e---eeeeecCCceEeeeccCCch
Confidence 8853211 1 12457899988888888643
No 450
>PRK06057 short chain dehydrogenase; Provisional
Probab=86.63 E-value=5.6 Score=37.80 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..|.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4678 99999998 89999999999998 9988776664
No 451
>PRK12828 short chain dehydrogenase; Provisional
Probab=86.55 E-value=6.5 Score=36.31 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+..
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 99999995 89999999999988 998877766533
No 452
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.45 E-value=7 Score=36.41 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.1
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999997 67999999999998 999887777644
No 453
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.37 E-value=3.7 Score=41.31 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCC
Confidence 46 8999999999999999998888 8887654444 445677787776
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.35 E-value=5.1 Score=40.67 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cCCHHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~Ea~~~ADiViLav 186 (434)
.| .++.|+|.|.+|...++-++.. |.+|++..+.+.+....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 56 8999999999999999888887 88776665554443344455676310 000 001122233579999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.... .++.....++++..++.
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLIL 273 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEE
Confidence 7432 33334455666665543
No 455
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.30 E-value=2.6 Score=41.48 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH--HHHHH-cC------ccccCCC-cCCHHhhhc
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~~-~~~~~Ea~~ 177 (434)
+| ++|.|.| .|-+|..+++.|.+. |++|++..|...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 998876666533211 11111 11 1110100 123556788
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
+.|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
No 456
>PRK09242 tropinone reductase; Provisional
Probab=86.28 E-value=2.9 Score=39.79 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 567 99999995 79999999999998 99987777653
No 457
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.16 E-value=6.2 Score=39.88 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCcccc-CCCcCCHHh----hh--ccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~E----a~--~~AD 180 (434)
.| ++|.|+|.|.+|...++-++.. |.+ |+ ..+.+.+..+.+++.|...- +....+..+ .. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi-~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKII-AVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999888887 875 54 44444556778888876310 101112222 22 1479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+-++... ..+......++++..+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999888742 2233333456666655533
No 458
>PRK06182 short chain dehydrogenase; Validated
Probab=86.15 E-value=5 Score=38.64 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---Hhhhc-------
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea~~------- 177 (434)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 35 88999995 79999999999988 9998776665333 3323233332110012232 23333
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799988764
No 459
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.99 E-value=5.6 Score=39.51 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCcccc-CCCcCCHH---hhhc--cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---Ea~~--~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.+ |++..+ +++..+.+++.|.... +....+.+ +... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~-~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDP-SPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988887 887 665444 3445677788886320 10001111 2222 5799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9988876543 222233455555544
No 460
>PRK14031 glutamate dehydrogenase; Provisional
Probab=85.98 E-value=1.8 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
..++| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 36899 9999999999999999999998 988765333
No 461
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=85.96 E-value=2.6 Score=43.99 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=47.0
Q ss_pred ccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcC
Q 013877 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
.++| +||+|+|.| ++..+++..+..- |.+|.+...++ +...+. +++.|.... ...
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 899999853 4457777777766 88877765432 222233 334554310 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
+++|++++||+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
No 462
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.94 E-value=3.1 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99987777653
No 463
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.84 E-value=5.9 Score=37.90 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=55.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCcCCHHhh--hccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea--~~~ADiViL 184 (434)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++. +.+.+..+.+++.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888877 877 6544 4334446677777721 1111111111 135799998
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++.... .+.+....++++..++.
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVL 188 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEE
Confidence 876432 33444556666665543
No 464
>PRK07825 short chain dehydrogenase; Provisional
Probab=85.79 E-value=4.2 Score=39.11 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 456 89999996 78999999999998 99987776653
No 465
>PRK07831 short chain dehydrogenase; Provisional
Probab=85.75 E-value=4.2 Score=38.82 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.2
Q ss_pred cccccCCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 104 LPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~-G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
....+++ +++.|.|. | -+|.++++.|.+. |++|++..+.
T Consensus 11 ~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 11 GHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred cccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3456778 99999997 6 5999999999998 9998776654
No 466
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.71 E-value=1.6 Score=48.30 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|...+
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 34456 89999995 89999999999998 9998877776443
No 467
>PLN02214 cinnamoyl-CoA reductase
Probab=85.67 E-value=3.2 Score=42.03 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-HH--Hc---C--ccccCC-CcCCHHhh
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR--AA---G--FTEENG-TLGDIYET 175 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-A~--~~---G--~~~~~~-~~~~~~Ea 175 (434)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|...+.... .. .. . +...|- ...+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34567 99999997 99999999999999 99987666653321111 11 11 1 111110 01234567
Q ss_pred hccCCEEEEeecc
Q 013877 176 ISGSDLVLLLISD 188 (434)
Q Consensus 176 ~~~ADiViLavpd 188 (434)
++.+|+||.+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988753
No 468
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=85.63 E-value=2.4 Score=43.04 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.++| .||++||- .+...+++..+..- |.+|.+...+. ....+. +.+.|.... ...+++++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3778 99999996 68888988888876 88877654322 112222 344553210 1468999999
Q ss_pred cCCEEEEe
Q 013877 178 GSDLVLLL 185 (434)
Q Consensus 178 ~ADiViLa 185 (434)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
No 469
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.55 E-value=6.1 Score=40.23 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=54.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++. ..++...+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAV-DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 8999999999999999888887 88 46544 444555778888886320 100112222221 4799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
||-++.... .+......++++..++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 998886422 2223333455555444
No 470
>PRK05717 oxidoreductase; Validated
Probab=85.34 E-value=4.6 Score=38.38 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| |+|.|+|. |.+|.++|+.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5678 99999995 89999999999988 9888776554
No 471
>PRK09414 glutamate dehydrogenase; Provisional
Probab=85.28 E-value=2.3 Score=45.60 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
..++| ++|+|.|+|+.|...|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 46889 9999999999999999999988 887765433
No 472
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.28 E-value=4.8 Score=40.26 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhh---hc--cCC-E
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---IS--GSD-L 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea---~~--~AD-i 181 (434)
.| ++|.|.|.|.+|...++-++.. |.++++.........+.+++.|.... +....+.++. .. ..| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 46 8999999999999999988888 88644444443444667777775310 0000111111 11 346 7
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+-++.... .+.+....++++..++
T Consensus 233 v~d~~G~~~---~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 233 ILETAGVPQ---TVELAIEIAGPRAQLA 257 (347)
T ss_pred EEECCCCHH---HHHHHHHHhhcCCEEE
Confidence 777777532 2333334455655544
No 473
>PLN02661 Putative thiazole synthesis
Probab=85.20 E-value=1.4 Score=46.02 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=41.7
Q ss_pred hhcccccchhhccCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 84 ISLADRDEYIVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 84 ~~~~~~~e~~~~~~~~--~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.+|+..+|..+.+.-| -|.++ ..... ..|.|||.|..|...|..|.+. .|++|.+..+.
T Consensus 65 ~~f~~~~e~~is~~i~~~~~~~l-~~~~~-~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~ 125 (357)
T PLN02661 65 FKFAPIKESIVSREMTRRYMTDM-ITYAD-TDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQS 125 (357)
T ss_pred ccceechhhHhhccchHhHhhhh-hhccc-CCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecC
Confidence 4677777877776655 24444 33444 5799999999999999999753 16787776553
No 474
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.19 E-value=3.5 Score=38.56 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 667 89999997 79999999999998 99887766653
No 475
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.17 E-value=2.1 Score=44.97 Aligned_cols=67 Identities=28% Similarity=0.298 Sum_probs=43.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----HHHHHcCccccCCCcCC---HHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... ...++.|+...-+...+ ..+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999877665432212 12334576431111111 11356788998883
No 476
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=85.04 E-value=2.7 Score=34.68 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC----cccc-CCCcCCH---HhhhccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEE-NGTLGDI---YETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~-~~~~~~~---~Ea~~~AD 180 (434)
+| .+|.-||+|.-..++...-+.. +.+| ++.+.++...+.|++.- .... .-...+. .+...+.|
T Consensus 1 p~-~~vLDlGcG~G~~~~~l~~~~~------~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 72 (112)
T PF12847_consen 1 PG-GRVLDLGCGTGRLSIALARLFP------GARV-VGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFD 72 (112)
T ss_dssp TT-CEEEEETTTTSHHHHHHHHHHT------TSEE-EEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEE
T ss_pred CC-CEEEEEcCcCCHHHHHHHhcCC------CCEE-EEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCC
Confidence 45 7899999998444443322224 6675 57777676666665432 1100 0001233 34455789
Q ss_pred EEEEee-----cc--hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLI-----SD--AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLav-----pd--~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|++.- -. ....++++.+...|+||..+++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 998866 11 23356788899999999877643
No 477
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=85.00 E-value=2.2 Score=45.21 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
.|+| ++|+|=|+||.|.-.|+.|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 988877665533
No 478
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.86 E-value=5 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 78999999999998 99988776653
No 479
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=84.85 E-value=1.4 Score=43.08 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99999888753
No 480
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.56 E-value=5.2 Score=39.36 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHh-hhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E-a~~~ADiViLavp 187 (434)
+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.+.+
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcCC
Confidence 45 7999999999999999888877 88876655553 4456667777532 111111 2235688888765
Q ss_pred chHHHHHHHHHHhcCCCCcEEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.. ..++++...++++..++.
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEE
Confidence 43 345556666766665553
No 481
>PLN02740 Alcohol dehydrogenase-like
Probab=84.54 E-value=5.9 Score=40.61 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ ++...+.+++.|...- +... .+..+.+. ..
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGVDI-NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEEcC-ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999988887 87 4654444 4455788888886310 1000 01222222 47
Q ss_pred CEEEEeecch
Q 013877 180 DLVLLLISDA 189 (434)
Q Consensus 180 DiViLavpd~ 189 (434)
|+||-++-..
T Consensus 270 dvvid~~G~~ 279 (381)
T PLN02740 270 DYSFECAGNV 279 (381)
T ss_pred CEEEECCCCh
Confidence 8998888743
No 482
>PRK09186 flagellin modification protein A; Provisional
Probab=84.47 E-value=4.3 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |+|.|.|. |.+|.++|+.|.+. |++|++..|.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 467 89999996 79999999999998 9988776654
No 483
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.44 E-value=4.7 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.3
Q ss_pred cCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+
T Consensus 5 l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN 42 (252)
T ss_pred cCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc
Confidence 677 999999985 7999999999998 9998877664
No 484
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=84.26 E-value=5.7 Score=37.73 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHH--------HHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~--------~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
||+|||.|+.-.+. ...+....++- .+-++. -.+.++...+ ..++.|....=....|.+|++++||+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l-~~~ei~-L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL-SGSEIV-LMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS-TEEEEE-EE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC-CCcEEE-EEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 79999999986663 22222221110 011444 4444443222 2233443211122578999999999999
Q ss_pred EeecchHHHH
Q 013877 184 LLISDAAQAD 193 (434)
Q Consensus 184 Lavpd~a~~~ 193 (434)
+.+-..-...
T Consensus 79 ~~irvGg~~~ 88 (183)
T PF02056_consen 79 NQIRVGGLEA 88 (183)
T ss_dssp E---TTHHHH
T ss_pred EEeeecchHH
Confidence 9998776653
No 485
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=84.07 E-value=4.3 Score=40.54 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCcccc-CCCcCCHHhh-hccCCE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYET-ISGSDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~-~~~~~~~~Ea-~~~ADi 181 (434)
..| ++|.-||||+-..+ ..+... |..-+++.+.++...+.|++ .++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~la--i~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGILS--IAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhHHH--HHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 456 89999999993334 344444 54334677776665555554 232100 0001111111 236799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+..........+++++...|+||..++++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987666555567888889999999877644
No 486
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=83.92 E-value=1.6 Score=43.46 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..++| +||+|.|+|++|...|+.|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56789 9999999999999999999988 98876
No 487
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.91 E-value=3.6 Score=39.06 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999997 68999999999998 9998777664
No 488
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.78 E-value=4.2 Score=38.60 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| |+|.|.|. |.+|.++++.|.+. |++|++..|.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4678 99999995 89999999999998 9998776665
No 489
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=83.62 E-value=5 Score=38.71 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-HHcCcccc-----------CC----CcCCH
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-----------NG----TLGDI 172 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-----------~~----~~~~~ 172 (434)
++ .+|-++|||.- .-+.-|.+. |++| ++.+..+...+.+ .+.|.... .. ...|.
T Consensus 37 ~~-~rvL~~gCG~G--~da~~LA~~------G~~V-~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 37 AG-SRVLVPLCGKS--LDMLWLAEQ------GHEV-LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CC-CeEEEeCCCCh--HhHHHHHhC------CCeE-EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 45 79999999984 345556677 9987 5777766656654 33443210 00 01122
Q ss_pred Hhh----hccCCEEE-----EeecchHHHHHHHHHHhcCCCCcE-EEEeccc
Q 013877 173 YET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSI-LGLSHGF 214 (434)
Q Consensus 173 ~Ea----~~~ADiVi-----Lavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~ 214 (434)
.+. ....|.|+ .++|+......++.|...|+||.+ +.+++.+
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 111 12346666 788888888899999999999975 3444433
No 490
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.57 E-value=2.9 Score=48.86 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=50.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---c-----------------hhHHHHHHcCccccC--
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S-----------------RSFAEARAAGFTEEN-- 166 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~---~-----------------~s~~~A~~~G~~~~~-- 166 (434)
+| |||+|||.|.-|.+-|..|.+. |++|+|..+.. . +..+..++.|+....
T Consensus 305 ~g-kkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~ 377 (944)
T PRK12779 305 VK-PPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNF 377 (944)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeE
Confidence 57 9999999999999999999999 99988876532 0 123345556664210
Q ss_pred --CCcCCHHhhhc-cCCEEEEeecc
Q 013877 167 --GTLGDIYETIS-GSDLVLLLISD 188 (434)
Q Consensus 167 --~~~~~~~Ea~~-~ADiViLavpd 188 (434)
+...+.++..+ ..|.|||++--
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 11124566654 68999999753
No 491
>PRK08324 short chain dehydrogenase; Validated
Probab=83.55 E-value=3.6 Score=45.98 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 106 ~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
..++| ++|.|+| .|.+|.++++.|.+. |.+|++..|..++
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 9988777776443
No 492
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=83.51 E-value=2.5 Score=33.56 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999998 98888776653
No 493
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=83.50 E-value=6.8 Score=41.62 Aligned_cols=94 Identities=13% Similarity=0.051 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| +||+|.|+ .+-+..++..|++. |.+|.+++..-. .....+..|... . + ..++
T Consensus 311 ~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~~ 376 (425)
T PRK15182 311 NVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVKS 376 (425)
T ss_pred CCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhhh
Confidence 4688 99999998 57788899999988 998876653211 111112334321 1 1 2357
Q ss_pred ccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 177 SGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
++||+|++++.-....++ ++.+...++...+|++.-+.
T Consensus 377 ~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 377 SHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred cCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 789999999998777643 55666666644577775543
No 494
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=83.49 E-value=5.9 Score=39.48 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC-HHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~Ea~~~ADiViLav 186 (434)
+| .+|.|.|.|.+|.+.++-++.. |.+|++..+. .+..+.+.+.|...- +....+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 46 7999999999999999888887 8887665544 344566666675310 000001 112234679999988
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+... .+.+....++++..++
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v 260 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLV 260 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEE
Confidence 8652 2334445555555444
No 495
>PRK06197 short chain dehydrogenase; Provisional
Probab=83.26 E-value=13 Score=36.56 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=35.5
Q ss_pred CCccccccccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 97 GRDLFNLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 97 ~~~~f~~~~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+.|..... ..++| ++|.|.|. |-+|.++|+.|.+. |++|++..|..
T Consensus 4 ~~~~~~~~-~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 4 TKWTAADI-PDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCcccc-ccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34544333 45788 99999995 89999999999998 99887777653
No 496
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=83.20 E-value=4.3 Score=41.94 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=45.6
Q ss_pred c-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CC----chhHHH----HHHcCccccCCCcC
Q 013877 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 108 ~-~g~kkIgIIG~G-------~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
+ +| .||+|++.| ++..+++..+..- |.+|.+... +. ....+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 78 899776543 6788888877766 888877654 21 111222 334453211 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
++.|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999854
No 497
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=82.92 E-value=3.8 Score=40.09 Aligned_cols=62 Identities=27% Similarity=0.245 Sum_probs=43.1
Q ss_pred EEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 145 VGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 145 vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
++++..++..+.+...|... +.+++|++ .+.|+|++|+|+..+.++..++. +.|+ +++.+.|
T Consensus 7 V~D~~~e~a~~~a~~~g~~~----~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL---~aGkhVl~~s~g 70 (229)
T TIGR03855 7 VYDRNPKDAKELAERCGAKI----VSDFDEFLPEDVDIVVEAASQEAVKEYAEKIL---KNGKDLLIMSVG 70 (229)
T ss_pred EECCCHHHHHHHHHHhCCce----ECCHHHHhcCCCCEEEECCChHHHHHHHHHHH---HCCCCEEEECCc
Confidence 34444455556666677653 57888876 67999999999999998887654 3454 5565555
No 498
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.87 E-value=6.7 Score=39.26 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHH----hhh--ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----Ea~--~~ADi 181 (434)
+| ++|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999888877 88534445444556778888886310 10011211 122 24799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+-++... ..+.+..+.++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 98887743 23344445565655544
No 499
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.83 E-value=13 Score=37.43 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCC---HHhhhccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGD---IYETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~---~~Ea~~~AD 180 (434)
.+ ++|.|.| .|-+|..+++.|.+. |++|++..|...+....... ..+......+.+ ..+++++.|
T Consensus 9 ~~-~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (353)
T PLN02896 9 AT-GTYCVTGATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCD 81 (353)
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCC
Confidence 45 8999999 699999999999998 99987666653322211111 112110111222 346677889
Q ss_pred EEEEeec
Q 013877 181 LVLLLIS 187 (434)
Q Consensus 181 iViLavp 187 (434)
+||-+..
T Consensus 82 ~Vih~A~ 88 (353)
T PLN02896 82 GVFHVAA 88 (353)
T ss_pred EEEECCc
Confidence 8887764
No 500
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=82.76 E-value=7.1 Score=37.49 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-HHcCcccc-----------CC----CcCCH
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-----------NG----TLGDI 172 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-----------~~----~~~~~ 172 (434)
.+ .+|-++|||.- .-|.-|.+. |++| ++.+..+...+.+ .+.|.... .. .+.|.
T Consensus 34 ~~-~rvLd~GCG~G--~da~~LA~~------G~~V-~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 34 AG-ARVFVPLCGKS--LDLAWLAEQ------GHRV-LGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CC-CeEEEeCCCch--hHHHHHHhC------CCeE-EEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 55 79999999984 445566777 9997 4777655555553 33333100 00 01222
Q ss_pred Hhh----hccCCEEE-----EeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 173 YET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 173 ~Ea----~~~ADiVi-----Lavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+. ...-|.|+ +++|+..-...++.+...|+||.++.
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 111 12235544 57788777788889999999998543
Done!