BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013878
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 291 bits (744), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 171/440 (38%), Positives = 250/440 (56%), Gaps = 46/440 (10%)
Query: 35 TQSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLP 94
+Q+++ HVAVLAF F +H + ++ +LA+AAP+ FSFFST +SN S+ S +
Sbjct: 2 SQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQ 61
Query: 95 DNIKVYDIEDGVPMKNASTESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDA 154
NIK YDI DGVP + E +EL +A PE+F++G+ AV ETGR +SC++ DA
Sbjct: 62 CNIKSYDISDGVP-EGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADA 120
Query: 155 FLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFINSSGSLRLEDQTLDIIPGL 214
F+ F+ +MA +M + WLP + A P ++S H++ I + I SG ED+ L+ IPG+
Sbjct: 121 FIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIRE-KIGVSGIQGREDELLNFIPGM 179
Query: 215 SMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSK 274
S +R DL + I++G+ SLFS ML ++G VLP+ + IN ++EL LTNDL SK
Sbjct: 180 SKVRFRDLQEGIVFGN-LNSLFSRMLHRMGQVLPKATAVFINSFEEL--DDSLTNDLKSK 236
Query: 275 VPSLLSVGFLT---------------QXXXXXXXXXXIQMKLPAMVGQTKGKICCVSLAL 319
+ + L++G Q + + + ++ +S AL
Sbjct: 237 LKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEAL 296
Query: 320 -------------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSV 354
+T G G +V APQ +VL H ++G FVTHCG NS+
Sbjct: 297 EASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL 356
Query: 355 CESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHE-GK 413
ES+A GV +ICRPFFGD R+N R+VE+V IGV++EG V TKSG++ + + S E GK
Sbjct: 357 WESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGK 416
Query: 414 KMRENVRHLKEIVIEAAGPK 433
K+REN+R L+E A GPK
Sbjct: 417 KLRENLRALRETADRAVGPK 436
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 232/430 (53%), Gaps = 52/430 (12%)
Query: 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYD 101
HVAVLAF FG+H + +L+ K+A+ AP + FSFF T +ND+L S S LP NIK Y+
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLP-NIKYYN 73
Query: 102 IEDGVPMKNASTESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGE 161
+ DG+P K + N E + L KA ENFK ++ AV ETG+ I+C++TDAF F +
Sbjct: 74 VHDGLP-KGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGAD 132
Query: 162 MARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFINSSGSLRLED-QTLDIIPGLSMMRIS 220
+A +MH W+P++ A P+++ H++T LI + +GS + D +++D++PG ++ S
Sbjct: 133 LAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE----KTGSKEVHDVKSIDVLPGFPELKAS 188
Query: 221 DLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKVPSLLS 280
DL + ++ + F++ML K+G LP+ + IN + ++ + N+LNSK LL+
Sbjct: 189 DLPEGVI--KDIDVPFATMLHKMGLELPRANAVAINSFATIH--PLIENELNSKFKLLLN 244
Query: 281 VGFLT---------------QXXXXXXXXXXIQMKLPAMVGQTKGKICCVSLALRTSG-- 323
VG + + + ++V ++ ++ +L G
Sbjct: 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 324 -----------------------RGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIAN 360
+GKIV APQ ++L H S+GVF+TH G NSV E I
Sbjct: 305 FIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVG 364
Query: 361 GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLEL-MFSHEGKKMRENV 419
GV MI RPFFGD +N L E V IGV V+ VLTK + ++LEL M S +G MR+ +
Sbjct: 365 GVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKI 424
Query: 420 RHLKEIVIEA 429
LKE +A
Sbjct: 425 VKLKESAFKA 434
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%)
Query: 322 SGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVE 381
+ RG I PQ +VL H SIG F+THCG NS ESI GV M+C PFF D + R +
Sbjct: 352 ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC 411
Query: 382 EVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGP 432
W IG++++ V + E++ +GKKM++ LK+ E P
Sbjct: 412 NEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRP 462
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 320 RTSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNAR 378
RT RG ++ APQ QVL H S G F+THCG NS ES+ +G+ +I P + + +MNA
Sbjct: 335 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Query: 379 LVEEVWGIGVKV----EGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKE 424
L+ E ++ +G+V + LM EGK +R ++ LKE
Sbjct: 395 LLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKE 444
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 319 LRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNA- 377
+ G+G I APQ +VL H +IG FV+HCG NS+ ES+ GV ++ P + + ++NA
Sbjct: 328 MELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAF 387
Query: 378 RLVEEVWGIGV 388
RLV+E WG+G+
Sbjct: 388 RLVKE-WGVGL 397
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 319 LRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNA- 377
+ G+G I APQ +VL H +IG FV+HCG NS+ ES+ GV ++ P + + ++NA
Sbjct: 328 MELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAF 387
Query: 378 RLVEEVWGIGV 388
RLV+E WG+G+
Sbjct: 388 RLVKE-WGVGL 397
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVE 391
PQ +LGH F+TH GAN + E+I +G+ + P F D N + G V+V+
Sbjct: 77 PQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHX-KARGAAVRVD 135
Query: 392 GIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEI 425
+ + +L +L+ + + K ENV L I
Sbjct: 136 FNTXSSTDLLNALKRVINDPSYK--ENVXKLSRI 167
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVE 391
PQ +L S F+TH G S E+++N V M+ P + MNA + E+ G+G +
Sbjct: 314 PQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRHIP 370
Query: 392 GIVLTKSGVLQSLELMFSHEGKKMR 416
+T + +++ + S G R
Sbjct: 371 RDQVTAEKLREAVLAVASDPGVAER 395
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 125 QKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMAR------DMHIPWLPVFVAMP 178
++ + +NF K LN +F ++C L T+S ++ D+ PW+ +
Sbjct: 88 ERLSIQNFSKLLNDNIFHMSL-LACALEVVMATYSRSTSQNLDSGTDLSFPWILNVL--- 143
Query: 179 YNVSAHIHTGLIHQFFINSSGSLRLE-DQTLDIIPGLSMMRISDLSDEILWGDSRESLFS 237
N+ A +I F I + G+L E + L+ M ++ LSD L+
Sbjct: 144 -NLKAFDFYKVIESF-IKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFD-------- 193
Query: 238 SMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKVPSLLS 280
L K ++P+GST++ FY+++Y + L LN+ LLS
Sbjct: 194 --LIKQSKLVPRGSTSLSLFYKKVYRLAYLR--LNTLCERLLS 232
>pdb|1B9H|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 192 QFFINSSGS-LRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQG 250
++F +GS +RL + + ++ +++ L ++I D R +L S +L + GV+PQG
Sbjct: 225 RYFHKIAGSNMRLNEFSASVL----RAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQG 280
Query: 251 STAVINFYQELYCSSQLTNDLNSKVPSLLSVGFLTQXXXXXXXXXXIQMKLPA 303
+ D NS ++ + LT+ ++ LPA
Sbjct: 281 --------------GDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPA 319
>pdb|1B9I|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 192 QFFINSSGS-LRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQG 250
++F +GS +RL + + ++ +++ L ++I D R +L S +L + GV+PQG
Sbjct: 225 RYFHKIAGSNMRLNEFSASVL----RAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQG 280
Query: 251 STAVINFYQELYCSSQLTNDLNSKVPSLLSVGFLTQXXXXXXXXXXIQMKLPA 303
+ D NS ++ + LT+ ++ LPA
Sbjct: 281 --------------GDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPA 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,139,748
Number of Sequences: 62578
Number of extensions: 412681
Number of successful extensions: 1010
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 15
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)