Query 013878
Match_columns 434
No_of_seqs 161 out of 1620
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.6E-61 3.5E-66 479.3 37.6 376 40-433 7-434 (451)
2 PLN02173 UDP-glucosyl transfer 100.0 2.4E-61 5.3E-66 475.9 36.6 369 40-433 5-432 (449)
3 PLN02555 limonoid glucosyltran 100.0 2.1E-60 4.5E-65 473.0 36.7 381 40-433 7-453 (480)
4 PLN02152 indole-3-acetate beta 100.0 6.7E-60 1.5E-64 466.4 35.2 370 40-433 3-440 (455)
5 PLN02562 UDP-glycosyltransfera 100.0 2.7E-59 5.8E-64 464.6 37.2 376 36-429 2-430 (448)
6 PLN02207 UDP-glycosyltransfera 100.0 3.7E-59 8E-64 462.1 35.4 381 40-433 3-449 (468)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 5E-59 1.1E-63 464.6 35.6 383 38-433 7-455 (477)
8 PLN02210 UDP-glucosyl transfer 100.0 5.6E-59 1.2E-63 462.9 35.3 373 38-433 6-439 (456)
9 PLN02534 UDP-glycosyltransfera 100.0 6.8E-59 1.5E-63 462.8 35.5 382 36-433 4-470 (491)
10 PLN02670 transferase, transfer 100.0 3.7E-59 7.9E-64 462.6 33.2 380 36-431 2-451 (472)
11 PLN02764 glycosyltransferase f 100.0 1.3E-58 2.7E-63 455.2 34.7 365 39-431 4-431 (453)
12 PLN00414 glycosyltransferase f 100.0 9.2E-59 2E-63 459.0 33.5 362 37-431 1-426 (446)
13 PLN03004 UDP-glycosyltransfera 100.0 2.8E-58 6E-63 454.4 36.0 379 40-433 3-445 (451)
14 PLN02208 glycosyltransferase f 100.0 1.1E-58 2.4E-63 457.9 32.3 361 37-429 1-423 (442)
15 PLN02448 UDP-glycosyltransfera 100.0 4.9E-58 1.1E-62 458.9 35.8 382 38-433 8-441 (459)
16 PLN02992 coniferyl-alcohol glu 100.0 5.2E-58 1.1E-62 454.7 35.6 369 39-431 4-449 (481)
17 PLN00164 glucosyltransferase; 100.0 1.1E-57 2.4E-62 456.3 35.4 375 40-433 3-457 (480)
18 PLN03015 UDP-glucosyl transfer 100.0 4.3E-57 9.3E-62 445.7 36.8 377 40-433 3-452 (470)
19 PLN02554 UDP-glycosyltransfera 100.0 3E-57 6.5E-62 454.9 34.5 375 40-433 2-462 (481)
20 PLN02167 UDP-glycosyltransfera 100.0 5.1E-57 1.1E-61 452.5 32.8 382 39-433 2-456 (475)
21 PLN03007 UDP-glucosyltransfera 100.0 3.1E-56 6.6E-61 448.1 35.1 375 40-433 5-464 (482)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.6E-40 5.7E-45 333.3 27.5 353 42-429 22-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.7E-41 5.8E-46 345.1 1.0 347 42-429 2-426 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 1.5E-37 3.2E-42 308.9 21.3 337 41-428 1-387 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 4.9E-36 1.1E-40 297.0 26.5 328 46-430 1-377 (392)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.5E-35 3.4E-40 302.5 19.8 367 40-427 5-437 (496)
27 COG1819 Glycosyl transferases, 100.0 1.7E-33 3.8E-38 276.5 17.8 346 40-431 1-387 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 5.2E-20 1.1E-24 177.2 20.6 83 322-407 231-317 (318)
29 PRK12446 undecaprenyldiphospho 99.8 9.8E-18 2.1E-22 162.8 25.8 93 326-422 237-336 (352)
30 TIGR00661 MJ1255 conserved hyp 99.8 3.1E-17 6.8E-22 157.9 22.8 88 320-415 226-317 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.7 1.4E-14 3E-19 139.5 28.1 95 325-422 237-338 (357)
32 PRK00726 murG undecaprenyldiph 99.6 2.5E-12 5.4E-17 125.8 26.8 92 325-421 237-333 (357)
33 cd03785 GT1_MurG MurG is an N- 99.5 1.3E-11 2.9E-16 120.3 26.3 90 323-417 235-329 (350)
34 PF03033 Glyco_transf_28: Glyc 99.5 8.6E-14 1.9E-18 117.0 6.3 126 43-180 1-134 (139)
35 TIGR01133 murG undecaprenyldip 99.4 1.5E-10 3.3E-15 112.7 26.1 82 332-418 243-327 (348)
36 COG4671 Predicted glycosyl tra 99.4 3.1E-11 6.7E-16 111.5 18.8 73 334-409 289-364 (400)
37 PF04101 Glyco_tran_28_C: Glyc 99.3 1.5E-12 3.3E-17 113.1 3.4 85 323-410 55-144 (167)
38 TIGR00215 lpxB lipid-A-disacch 99.2 7.2E-10 1.6E-14 109.3 19.1 93 332-430 260-369 (385)
39 PRK13609 diacylglycerol glucos 99.2 3.1E-09 6.8E-14 104.9 22.1 82 322-410 255-338 (380)
40 TIGR03590 PseG pseudaminic aci 99.0 2.9E-08 6.3E-13 93.5 18.2 54 323-379 224-278 (279)
41 PRK00025 lpxB lipid-A-disaccha 98.9 3.8E-08 8.2E-13 97.1 16.1 79 333-417 255-346 (380)
42 cd03814 GT1_like_2 This family 98.7 5.4E-06 1.2E-10 80.4 24.0 86 321-417 245-337 (364)
43 cd03823 GT1_ExpE7_like This fa 98.6 2.9E-05 6.2E-10 75.0 23.8 80 322-410 242-329 (359)
44 cd03800 GT1_Sucrose_synthase T 98.5 3.6E-05 7.8E-10 76.0 24.7 80 322-410 282-368 (398)
45 PLN02871 UDP-sulfoquinovose:DA 98.5 0.0001 2.2E-09 74.9 27.8 90 323-421 312-413 (465)
46 TIGR03492 conserved hypothetic 98.5 2.6E-05 5.6E-10 77.3 20.8 80 332-419 289-371 (396)
47 PRK13608 diacylglycerol glucos 98.3 1.4E-06 3.1E-11 86.2 8.8 93 323-422 256-352 (391)
48 cd03817 GT1_UGDG_like This fam 98.3 0.00016 3.4E-09 70.1 23.1 95 321-425 257-360 (374)
49 cd03794 GT1_wbuB_like This fam 98.3 0.00018 4E-09 69.9 23.6 92 322-422 274-379 (394)
50 cd03818 GT1_ExpC_like This fam 98.3 0.00082 1.8E-08 66.7 26.2 93 323-422 281-380 (396)
51 PRK05749 3-deoxy-D-manno-octul 98.2 0.00021 4.5E-09 71.7 21.9 83 334-423 314-403 (425)
52 TIGR02468 sucrsPsyn_pln sucros 98.2 0.00069 1.5E-08 73.4 26.4 92 323-421 548-650 (1050)
53 COG3980 spsG Spore coat polysa 98.2 0.00015 3.2E-09 65.9 17.8 85 333-424 221-305 (318)
54 PLN02605 monogalactosyldiacylg 98.2 5.9E-06 1.3E-10 81.6 8.6 93 323-422 265-362 (382)
55 cd03816 GT1_ALG1_like This fam 98.1 0.0011 2.4E-08 66.3 24.2 89 324-423 295-399 (415)
56 PRK10307 putative glycosyl tra 98.1 0.0022 4.9E-08 63.9 25.0 94 323-423 284-388 (412)
57 COG1519 KdtA 3-deoxy-D-manno-o 98.0 0.0025 5.3E-08 61.7 22.3 79 345-429 327-407 (419)
58 cd03808 GT1_cap1E_like This fa 98.0 0.0021 4.6E-08 61.6 22.6 79 323-410 246-329 (359)
59 cd03820 GT1_amsD_like This fam 98.0 0.0012 2.7E-08 62.9 20.8 87 322-419 234-326 (348)
60 cd03801 GT1_YqgM_like This fam 98.0 0.0031 6.7E-08 60.5 23.6 81 321-410 254-341 (374)
61 TIGR03449 mycothiol_MshA UDP-N 98.0 0.0024 5.2E-08 63.5 22.6 92 322-422 282-382 (405)
62 cd04962 GT1_like_5 This family 97.9 0.0029 6.3E-08 61.8 22.7 92 322-422 252-350 (371)
63 cd03821 GT1_Bme6_like This fam 97.8 0.0078 1.7E-07 58.1 22.8 92 322-422 261-359 (375)
64 cd03799 GT1_amsK_like This is 97.8 0.0035 7.7E-08 60.6 20.0 81 321-410 234-327 (355)
65 cd03798 GT1_wlbH_like This fam 97.8 0.012 2.6E-07 56.6 23.7 81 321-410 257-344 (377)
66 cd03802 GT1_AviGT4_like This f 97.7 0.0058 1.3E-07 58.6 19.6 80 322-410 223-308 (335)
67 cd03805 GT1_ALG2_like This fam 97.7 0.02 4.3E-07 56.5 23.7 91 321-421 278-377 (392)
68 TIGR02470 sucr_synth sucrose s 97.7 0.07 1.5E-06 56.9 28.4 58 344-408 646-707 (784)
69 cd03811 GT1_WabH_like This fam 97.6 0.01 2.2E-07 56.6 19.7 80 322-410 245-332 (353)
70 cd03825 GT1_wcfI_like This fam 97.5 0.024 5.2E-07 54.9 22.0 81 321-410 242-330 (365)
71 cd03819 GT1_WavL_like This fam 97.5 0.033 7.2E-07 53.8 22.3 96 322-424 245-347 (355)
72 KOG3349 Predicted glycosyltran 97.4 0.00013 2.8E-09 59.7 3.5 59 329-390 69-132 (170)
73 PF04007 DUF354: Protein of un 97.4 0.095 2.1E-06 50.4 23.7 72 329-409 238-309 (335)
74 cd03796 GT1_PIG-A_like This fa 97.4 0.018 3.8E-07 57.2 18.7 79 321-410 248-333 (398)
75 PF02684 LpxB: Lipid-A-disacch 97.3 0.047 1E-06 53.3 20.3 95 332-433 253-361 (373)
76 cd03812 GT1_CapH_like This fam 97.2 0.077 1.7E-06 51.3 21.3 89 321-421 247-340 (358)
77 PRK01021 lpxB lipid-A-disaccha 97.1 0.23 5.1E-06 51.1 23.6 93 334-432 483-591 (608)
78 cd03795 GT1_like_4 This family 97.1 0.0028 6.1E-08 61.3 9.3 97 321-423 242-347 (357)
79 PRK09814 beta-1,6-galactofuran 96.8 0.0061 1.3E-07 59.0 8.8 100 320-428 204-318 (333)
80 PF00534 Glycos_transf_1: Glyc 96.7 0.0069 1.5E-07 52.2 7.9 88 321-419 71-165 (172)
81 cd05844 GT1_like_7 Glycosyltra 96.7 0.0085 1.8E-07 58.4 9.4 92 321-421 243-349 (367)
82 COG5017 Uncharacterized conser 96.6 0.0089 1.9E-07 48.3 7.0 73 334-409 60-141 (161)
83 cd04946 GT1_AmsK_like This fam 96.6 0.012 2.7E-07 58.6 9.8 94 323-422 289-391 (407)
84 PRK15484 lipopolysaccharide 1, 96.5 0.017 3.7E-07 57.0 10.0 82 321-410 255-344 (380)
85 PRK15427 colanic acid biosynth 96.3 0.027 5.9E-07 56.1 10.2 92 321-421 277-384 (406)
86 cd03804 GT1_wbaZ_like This fam 96.3 0.0069 1.5E-07 58.8 5.7 84 320-410 239-326 (351)
87 TIGR00236 wecB UDP-N-acetylglu 96.3 0.022 4.7E-07 55.9 9.3 84 323-419 255-341 (365)
88 cd03822 GT1_ecORF704_like This 96.2 0.016 3.4E-07 56.1 7.9 93 321-423 245-349 (366)
89 cd04949 GT1_gtfA_like This fam 95.8 0.03 6.4E-07 54.9 7.7 98 322-425 260-362 (372)
90 TIGR03087 stp1 sugar transfera 95.6 0.051 1.1E-06 53.9 8.5 91 323-422 280-376 (397)
91 TIGR02472 sucr_P_syn_N sucrose 95.5 0.05 1.1E-06 54.8 8.4 83 321-410 315-406 (439)
92 cd01635 Glycosyltransferase_GT 95.5 1.3 2.7E-05 39.2 16.7 26 50-77 12-37 (229)
93 cd03786 GT1_UDP-GlcNAc_2-Epime 95.5 0.055 1.2E-06 52.8 8.2 77 323-410 258-337 (363)
94 COG0381 WecB UDP-N-acetylgluco 95.1 2.7 5.9E-05 40.8 18.0 81 324-417 263-346 (383)
95 PRK09922 UDP-D-galactose:(gluc 94.9 0.1 2.2E-06 50.9 8.2 95 321-424 234-342 (359)
96 TIGR03088 stp2 sugar transfera 94.9 0.081 1.8E-06 51.8 7.5 79 323-410 255-338 (374)
97 cd03807 GT1_WbnK_like This fam 94.8 0.16 3.4E-06 48.7 9.2 77 323-410 251-332 (365)
98 cd03813 GT1_like_3 This family 94.8 0.18 3.8E-06 51.4 9.8 81 322-410 353-442 (475)
99 PF13579 Glyco_trans_4_4: Glyc 94.7 0.13 2.7E-06 43.1 7.3 96 56-174 6-103 (160)
100 PF13692 Glyco_trans_1_4: Glyc 94.6 0.031 6.8E-07 45.9 3.1 79 323-410 53-135 (135)
101 PRK14089 ipid-A-disaccharide s 94.5 0.025 5.5E-07 54.7 2.7 85 334-426 230-332 (347)
102 cd03809 GT1_mtfB_like This fam 94.4 0.14 3.1E-06 49.3 7.8 90 321-421 251-345 (365)
103 TIGR02149 glgA_Coryne glycogen 94.3 0.37 7.9E-06 47.3 10.5 86 329-421 267-365 (388)
104 PRK15179 Vi polysaccharide bio 94.3 0.22 4.7E-06 52.9 9.2 96 321-423 572-674 (694)
105 cd04951 GT1_WbdM_like This fam 94.2 0.12 2.6E-06 49.9 6.7 83 323-417 245-332 (360)
106 TIGR02918 accessory Sec system 94.0 0.23 5E-06 50.9 8.6 98 322-425 375-483 (500)
107 PF13477 Glyco_trans_4_2: Glyc 93.7 0.87 1.9E-05 37.4 10.3 102 42-174 1-106 (139)
108 PHA01633 putative glycosyl tra 93.3 0.37 7.9E-06 46.5 8.2 99 322-425 200-323 (335)
109 cd03806 GT1_ALG11_like This fa 92.6 0.37 8E-06 48.2 7.4 79 321-410 303-392 (419)
110 cd04950 GT1_like_1 Glycosyltra 92.6 0.54 1.2E-05 46.2 8.5 77 323-410 254-340 (373)
111 PLN02275 transferase, transfer 92.5 0.35 7.7E-06 47.5 7.1 74 324-408 287-371 (371)
112 PF13524 Glyco_trans_1_2: Glyc 92.2 0.79 1.7E-05 34.8 7.3 53 348-410 9-62 (92)
113 PLN02949 transferase, transfer 91.8 0.31 6.7E-06 49.4 5.7 93 321-422 333-437 (463)
114 PF12000 Glyco_trans_4_3: Gkyc 91.7 1.8 4E-05 37.2 9.6 92 69-175 2-96 (171)
115 PLN00142 sucrose synthase 91.0 2.4 5.2E-05 45.7 11.5 58 344-408 669-730 (815)
116 cd04955 GT1_like_6 This family 90.6 1.1 2.4E-05 43.2 8.2 77 321-410 246-330 (363)
117 PRK00654 glgA glycogen synthas 89.7 3.8 8.2E-05 41.6 11.5 84 321-409 335-427 (466)
118 cd03792 GT1_Trehalose_phosphor 89.6 2.3 5E-05 41.5 9.6 88 323-421 252-350 (372)
119 COG4370 Uncharacterized protei 89.2 0.47 1E-05 44.1 3.9 91 322-420 293-387 (412)
120 PF02350 Epimerase_2: UDP-N-ac 88.7 0.26 5.7E-06 47.9 2.1 82 323-418 239-324 (346)
121 PF13844 Glyco_transf_41: Glyc 88.1 1 2.3E-05 45.2 5.9 85 322-410 341-430 (468)
122 PLN02275 transferase, transfer 87.2 17 0.00037 35.5 14.0 127 37-174 1-133 (371)
123 PRK10017 colanic acid biosynth 86.6 1.7 3.7E-05 43.5 6.5 87 335-428 323-413 (426)
124 TIGR02472 sucr_P_syn_N sucrose 86.6 7.4 0.00016 39.1 11.2 106 52-174 27-144 (439)
125 PF13439 Glyco_transf_4: Glyco 85.6 8.3 0.00018 32.3 9.7 30 49-80 10-39 (177)
126 PF01975 SurE: Survival protei 85.5 7.2 0.00016 34.5 9.2 39 41-82 1-39 (196)
127 PRK15490 Vi polysaccharide bio 83.3 7.4 0.00016 40.2 9.3 75 321-404 453-532 (578)
128 PRK13932 stationary phase surv 83.2 24 0.00052 32.6 11.8 38 39-80 4-41 (257)
129 PLN02846 digalactosyldiacylgly 82.6 7.7 0.00017 39.2 9.1 70 329-410 290-363 (462)
130 PF04413 Glycos_transf_N: 3-De 81.0 3.1 6.8E-05 36.4 5.1 101 43-175 23-126 (186)
131 cd03786 GT1_UDP-GlcNAc_2-Epime 80.1 7.9 0.00017 37.5 8.2 33 47-80 5-37 (363)
132 COG1817 Uncharacterized protei 80.0 22 0.00047 33.6 10.3 107 48-177 7-114 (346)
133 cd03793 GT1_Glycogen_synthase_ 79.8 8.4 0.00018 39.8 8.3 77 332-410 467-552 (590)
134 PHA01630 putative group 1 glyc 79.4 5.3 0.00011 38.6 6.5 37 44-82 3-39 (331)
135 PRK13608 diacylglycerol glucos 79.2 5.9 0.00013 39.2 7.0 37 40-76 5-43 (391)
136 TIGR02095 glgA glycogen/starch 78.6 5 0.00011 40.8 6.5 84 321-409 344-436 (473)
137 PLN00142 sucrose synthase 78.3 6.9 0.00015 42.3 7.5 32 144-175 406-439 (815)
138 cd03806 GT1_ALG11_like This fa 78.2 13 0.00028 37.2 9.2 113 52-175 15-137 (419)
139 cd04955 GT1_like_6 This family 77.5 23 0.00051 33.8 10.6 47 50-103 14-60 (363)
140 PRK00654 glgA glycogen synthas 77.3 4.7 0.0001 40.9 5.8 37 41-79 1-43 (466)
141 PRK02261 methylaspartate mutas 76.7 5.5 0.00012 33.0 5.0 60 39-103 2-61 (137)
142 PRK14098 glycogen synthase; Pr 76.2 6.6 0.00014 40.2 6.5 83 321-408 360-449 (489)
143 TIGR02400 trehalose_OtsA alpha 76.2 10 0.00022 38.5 7.7 87 329-427 342-439 (456)
144 TIGR00236 wecB UDP-N-acetylglu 76.0 13 0.00028 36.3 8.3 108 42-173 2-116 (365)
145 PRK10916 ADP-heptose:LPS hepto 75.5 3.6 7.8E-05 39.9 4.2 45 41-85 1-45 (348)
146 cd03795 GT1_like_4 This family 75.4 35 0.00077 32.4 11.2 30 50-81 13-42 (357)
147 PRK10422 lipopolysaccharide co 74.9 3.7 8.1E-05 39.9 4.2 46 40-85 5-50 (352)
148 TIGR03568 NeuC_NnaA UDP-N-acet 74.8 14 0.00029 36.3 8.1 73 323-409 262-338 (365)
149 PLN02501 digalactosyldiacylgly 74.5 6.3 0.00014 41.7 5.7 74 325-410 603-681 (794)
150 PLN02891 IMP cyclohydrolase 73.4 14 0.00031 37.5 7.7 113 25-155 8-123 (547)
151 cd03791 GT1_Glycogen_synthase_ 73.2 4.4 9.5E-05 41.1 4.4 82 322-409 350-441 (476)
152 PLN02846 digalactosyldiacylgly 73.0 5.6 0.00012 40.2 4.9 41 37-79 1-46 (462)
153 COG0438 RfaG Glycosyltransfera 72.8 21 0.00045 33.2 8.7 79 323-410 257-342 (381)
154 PRK10964 ADP-heptose:LPS hepto 71.9 4.4 9.6E-05 38.8 3.8 43 41-83 1-43 (322)
155 PLN02605 monogalactosyldiacylg 70.3 7.4 0.00016 38.3 5.1 33 44-76 2-36 (382)
156 TIGR00087 surE 5'/3'-nucleotid 70.2 89 0.0019 28.7 11.8 36 42-81 2-37 (244)
157 cd04951 GT1_WbdM_like This fam 69.0 5.7 0.00012 38.0 4.0 36 43-80 2-39 (360)
158 PF08660 Alg14: Oligosaccharid 68.1 71 0.0015 27.5 10.1 36 45-80 2-37 (170)
159 TIGR03713 acc_sec_asp1 accesso 68.1 5.5 0.00012 41.0 3.7 89 323-425 409-505 (519)
160 KOG4626 O-linked N-acetylgluco 67.8 8.8 0.00019 39.6 4.9 54 349-405 846-900 (966)
161 COG1618 Predicted nucleotide k 67.8 19 0.00041 30.7 6.1 55 41-104 6-60 (179)
162 PF02441 Flavoprotein: Flavopr 67.8 7.9 0.00017 31.6 3.9 38 41-81 1-38 (129)
163 TIGR02193 heptsyl_trn_I lipopo 67.4 6.3 0.00014 37.6 3.8 45 42-86 1-45 (319)
164 TIGR03568 NeuC_NnaA UDP-N-acet 67.1 7.3 0.00016 38.2 4.3 31 146-176 93-126 (365)
165 PRK13935 stationary phase surv 67.1 1.1E+02 0.0023 28.3 11.5 35 42-80 2-36 (253)
166 cd03791 GT1_Glycogen_synthase_ 67.0 66 0.0014 32.5 11.4 23 55-79 20-42 (476)
167 cd02067 B12-binding B12 bindin 66.9 9.2 0.0002 30.5 4.1 35 42-78 1-35 (119)
168 COG0003 ArsA Predicted ATPase 66.4 56 0.0012 31.4 9.9 40 41-82 2-42 (322)
169 smart00851 MGS MGS-like domain 66.0 28 0.00061 26.2 6.5 28 57-88 2-29 (90)
170 cd03792 GT1_Trehalose_phosphor 66.0 17 0.00036 35.4 6.6 30 49-80 10-39 (372)
171 PRK10125 putative glycosyl tra 65.8 12 0.00025 37.3 5.5 61 335-405 302-366 (405)
172 PF02142 MGS: MGS-like domain 65.5 8.7 0.00019 29.4 3.6 84 57-171 2-94 (95)
173 PRK02797 4-alpha-L-fucosyltran 64.2 25 0.00053 33.4 6.8 102 323-432 206-320 (322)
174 cd03789 GT1_LPS_heptosyltransf 63.3 8.3 0.00018 36.0 3.7 44 42-85 1-44 (279)
175 PRK13933 stationary phase surv 61.0 1.4E+02 0.003 27.6 11.8 22 57-81 16-37 (253)
176 cd03822 GT1_ecORF704_like This 60.7 33 0.00071 32.6 7.5 36 43-80 2-40 (366)
177 TIGR03087 stp1 sugar transfera 60.1 8.6 0.00019 38.0 3.3 31 47-80 9-40 (397)
178 COG0496 SurE Predicted acid ph 59.8 1.3E+02 0.0029 27.7 10.5 37 42-82 2-38 (252)
179 TIGR00715 precor6x_red precorr 58.6 80 0.0017 29.2 9.2 34 334-367 190-229 (256)
180 TIGR02201 heptsyl_trn_III lipo 58.3 10 0.00023 36.6 3.5 109 42-174 1-110 (344)
181 cd03788 GT1_TPS Trehalose-6-Ph 58.3 15 0.00034 37.1 4.9 70 329-410 347-427 (460)
182 PF02951 GSH-S_N: Prokaryotic 58.3 18 0.00039 29.1 4.2 37 42-80 2-41 (119)
183 PRK09922 UDP-D-galactose:(gluc 57.7 75 0.0016 30.7 9.5 40 41-80 1-43 (359)
184 TIGR02195 heptsyl_trn_II lipop 57.4 11 0.00024 36.2 3.5 40 42-81 1-40 (334)
185 COG2185 Sbm Methylmalonyl-CoA 57.0 17 0.00038 30.1 4.0 39 39-79 11-49 (143)
186 cd03807 GT1_WbnK_like This fam 56.7 1.1E+02 0.0024 28.6 10.5 30 49-80 10-39 (365)
187 PF12146 Hydrolase_4: Putative 55.1 23 0.0005 26.0 4.1 33 42-76 17-49 (79)
188 PRK05595 replicative DNA helic 54.7 50 0.0011 33.3 7.8 42 42-85 203-245 (444)
189 PLN02316 synthase/transferase 54.4 45 0.00097 37.3 7.8 84 322-410 899-998 (1036)
190 PRK08305 spoVFB dipicolinate s 54.3 20 0.00044 31.6 4.3 38 40-80 5-43 (196)
191 PRK05986 cob(I)alamin adenolsy 54.2 1.5E+02 0.0033 26.0 9.8 64 40-106 22-86 (191)
192 PF02310 B12-binding: B12 bind 53.6 30 0.00065 27.4 5.0 36 42-79 2-37 (121)
193 PLN02939 transferase, transfer 52.9 44 0.00096 36.9 7.3 82 322-409 836-930 (977)
194 TIGR00708 cobA cob(I)alamin ad 52.3 1.5E+02 0.0032 25.6 9.2 34 41-76 6-39 (173)
195 TIGR02095 glgA glycogen/starch 50.5 25 0.00053 35.7 4.9 37 41-79 1-43 (473)
196 TIGR02919 accessory Sec system 50.2 39 0.00084 34.0 6.1 87 323-420 328-420 (438)
197 PRK06321 replicative DNA helic 49.5 1.2E+02 0.0026 30.9 9.5 42 42-85 228-270 (472)
198 COG3914 Spy Predicted O-linked 49.1 38 0.00083 34.8 5.7 77 323-405 489-573 (620)
199 PTZ00445 p36-lilke protein; Pr 48.9 73 0.0016 28.5 6.8 28 52-81 74-102 (219)
200 PRK13931 stationary phase surv 48.5 2.3E+02 0.0049 26.3 11.4 101 56-175 15-129 (261)
201 PRK04940 hypothetical protein; 47.9 47 0.001 28.9 5.4 31 146-176 60-91 (180)
202 PF07429 Glyco_transf_56: 4-al 46.7 62 0.0013 31.3 6.5 82 323-409 245-332 (360)
203 PF05728 UPF0227: Uncharacteri 46.6 48 0.001 29.0 5.4 41 136-176 49-90 (187)
204 COG1484 DnaC DNA replication p 46.2 21 0.00046 32.9 3.4 47 40-88 105-151 (254)
205 cd01423 MGS_CPS_I_III Methylgl 46.0 1E+02 0.0022 24.3 6.9 93 45-171 4-105 (116)
206 PF06258 Mito_fiss_Elm1: Mitoc 45.2 67 0.0015 30.7 6.6 59 331-391 220-281 (311)
207 cd07037 TPP_PYR_MenD Pyrimidin 45.1 34 0.00074 29.2 4.2 27 342-368 61-93 (162)
208 PHA02754 hypothetical protein; 45.1 34 0.00075 23.3 3.2 29 396-430 3-31 (67)
209 PRK13934 stationary phase surv 44.9 2.6E+02 0.0057 26.0 11.7 35 42-80 2-36 (266)
210 cd01424 MGS_CPS_II Methylglyox 44.9 1.3E+02 0.0029 23.4 7.4 83 53-172 11-100 (110)
211 cd02070 corrinoid_protein_B12- 44.6 42 0.00092 29.7 4.9 38 40-79 82-119 (201)
212 PRK13789 phosphoribosylamine-- 44.0 81 0.0017 31.6 7.3 37 37-80 1-37 (426)
213 COG0763 LpxB Lipid A disacchar 43.3 98 0.0021 30.3 7.3 90 336-428 261-364 (381)
214 cd05844 GT1_like_7 Glycosyltra 43.0 2.4E+02 0.0051 26.9 10.4 28 146-173 82-111 (367)
215 KOG0853 Glycosyltransferase [C 42.9 10 0.00023 38.3 0.8 66 348-421 377-442 (495)
216 TIGR03088 stp2 sugar transfera 42.1 1.8E+02 0.0038 28.1 9.4 92 50-172 13-108 (374)
217 PF05693 Glycogen_syn: Glycoge 42.1 34 0.00074 35.6 4.2 94 331-425 461-565 (633)
218 PF08323 Glyco_transf_5: Starc 42.1 44 0.00096 30.6 4.8 25 53-79 18-42 (245)
219 TIGR00959 ffh signal recogniti 42.1 1.7E+02 0.0036 29.5 9.1 40 42-83 101-141 (428)
220 TIGR03600 phage_DnaB phage rep 41.9 1.4E+02 0.0031 29.7 8.8 41 42-84 196-237 (421)
221 PRK11199 tyrA bifunctional cho 41.9 1.7E+02 0.0038 28.7 9.2 33 40-79 98-131 (374)
222 PHA02542 41 41 helicase; Provi 41.8 73 0.0016 32.4 6.6 39 43-83 193-231 (473)
223 PRK08506 replicative DNA helic 41.7 1.4E+02 0.003 30.5 8.6 42 42-85 194-235 (472)
224 COG1663 LpxK Tetraacyldisaccha 41.6 72 0.0016 30.7 6.1 72 8-83 18-89 (336)
225 PF06925 MGDG_synth: Monogalac 41.1 74 0.0016 27.1 5.8 24 53-76 1-25 (169)
226 COG0859 RfaF ADP-heptose:LPS h 40.6 45 0.00097 32.2 4.8 42 41-82 2-43 (334)
227 cd01974 Nitrogenase_MoFe_beta 39.9 97 0.0021 31.1 7.2 26 146-174 377-402 (435)
228 TIGR02370 pyl_corrinoid methyl 39.9 55 0.0012 28.9 4.8 104 40-169 84-188 (197)
229 PRK08760 replicative DNA helic 39.8 1.3E+02 0.0028 30.8 8.0 41 42-84 231-272 (476)
230 PF02374 ArsA_ATPase: Anion-tr 39.8 49 0.0011 31.5 4.8 39 42-82 2-41 (305)
231 cd01980 Chlide_reductase_Y Chl 39.4 1.1E+02 0.0023 30.7 7.3 27 145-174 349-375 (416)
232 cd07039 TPP_PYR_POX Pyrimidine 39.1 77 0.0017 27.0 5.5 27 342-368 64-96 (164)
233 cd02071 MM_CoA_mut_B12_BD meth 39.0 54 0.0012 26.3 4.3 36 42-79 1-36 (122)
234 PRK00346 surE 5'(3')-nucleotid 38.9 3.2E+02 0.0069 25.2 11.8 35 42-80 2-36 (250)
235 cd01421 IMPCH Inosine monophos 38.8 86 0.0019 27.4 5.6 87 55-155 11-100 (187)
236 TIGR02852 spore_dpaB dipicolin 38.1 44 0.00094 29.3 3.8 37 42-80 2-38 (187)
237 PF02571 CbiJ: Precorrin-6x re 37.7 80 0.0017 29.1 5.7 36 41-84 1-36 (249)
238 PRK06249 2-dehydropantoate 2-r 37.3 42 0.0009 32.0 4.0 34 40-80 5-38 (313)
239 COG0052 RpsB Ribosomal protein 37.3 48 0.001 30.3 4.0 32 144-175 154-187 (252)
240 PRK07313 phosphopantothenoylcy 37.3 47 0.001 28.9 3.9 37 42-81 3-39 (182)
241 TIGR02015 BchY chlorophyllide 37.2 1.1E+02 0.0024 30.6 7.1 31 42-79 287-317 (422)
242 PF06564 YhjQ: YhjQ protein; 37.0 3.3E+02 0.0072 24.9 10.4 37 42-80 3-40 (243)
243 PF05159 Capsule_synth: Capsul 36.9 37 0.00081 31.5 3.5 41 325-368 185-225 (269)
244 cd07038 TPP_PYR_PDC_IPDC_like 36.8 53 0.0011 27.9 4.1 27 342-368 60-92 (162)
245 PRK10867 signal recognition pa 36.5 2.6E+02 0.0056 28.2 9.4 42 42-84 102-143 (433)
246 PF02606 LpxK: Tetraacyldisacc 36.4 1.7E+02 0.0037 28.2 7.9 38 43-83 40-77 (326)
247 PRK15179 Vi polysaccharide bio 36.3 4.8E+02 0.01 28.1 11.9 120 42-173 283-429 (694)
248 KOG3339 Predicted glycosyltran 36.1 2.2E+02 0.0047 24.9 7.4 25 44-68 41-65 (211)
249 PF07894 DUF1669: Protein of u 36.0 62 0.0013 30.3 4.6 46 130-176 133-183 (284)
250 PRK07773 replicative DNA helic 35.9 1.7E+02 0.0037 32.5 8.8 42 43-85 220-261 (886)
251 PF04127 DFP: DNA / pantothena 35.9 38 0.00083 29.6 3.1 34 43-80 20-53 (185)
252 PRK06849 hypothetical protein; 35.8 68 0.0015 31.6 5.3 37 38-80 2-38 (389)
253 PRK14099 glycogen synthase; Pr 35.4 41 0.00089 34.4 3.8 38 40-79 3-46 (485)
254 TIGR00665 DnaB replicative DNA 34.9 2.3E+02 0.0049 28.4 9.0 42 42-85 197-239 (434)
255 PRK09165 replicative DNA helic 34.6 1.9E+02 0.0042 29.6 8.5 44 42-85 219-275 (497)
256 PLN02316 synthase/transferase 34.5 72 0.0016 35.8 5.5 38 40-79 587-630 (1036)
257 PF02350 Epimerase_2: UDP-N-ac 34.3 61 0.0013 31.5 4.6 31 146-176 67-100 (346)
258 PRK14099 glycogen synthase; Pr 34.2 68 0.0015 32.8 5.1 64 344-410 372-447 (485)
259 KOG0081 GTPase Rab27, small G 34.2 1E+02 0.0023 26.1 5.2 46 132-177 109-165 (219)
260 COG3959 Transketolase, N-termi 33.7 3.2E+02 0.007 24.7 8.4 39 40-80 110-151 (243)
261 PRK04885 ppnK inorganic polyph 33.7 70 0.0015 29.8 4.6 26 343-368 37-68 (265)
262 cd01141 TroA_d Periplasmic bin 33.6 63 0.0014 27.8 4.2 37 135-174 61-99 (186)
263 cd00984 DnaB_C DnaB helicase C 33.6 2.5E+02 0.0053 25.2 8.3 40 43-83 16-55 (242)
264 cd02069 methionine_synthase_B1 33.5 79 0.0017 28.3 4.9 39 40-80 88-126 (213)
265 COG2894 MinD Septum formation 33.0 78 0.0017 28.6 4.5 36 42-79 3-40 (272)
266 PF01380 SIS: SIS domain SIS d 32.7 1.3E+02 0.0029 23.7 5.8 30 50-81 62-91 (131)
267 PRK05920 aromatic acid decarbo 32.5 64 0.0014 28.7 4.0 38 41-81 4-41 (204)
268 PRK06029 3-octaprenyl-4-hydrox 32.5 63 0.0014 28.2 3.9 37 42-81 3-40 (185)
269 PRK08006 replicative DNA helic 32.3 2.8E+02 0.006 28.3 9.0 41 42-84 226-267 (471)
270 PLN03063 alpha,alpha-trehalose 32.3 72 0.0016 34.9 5.2 68 330-409 363-442 (797)
271 PF05225 HTH_psq: helix-turn-h 32.3 58 0.0012 21.0 2.8 26 396-422 1-26 (45)
272 PF07801 DUF1647: Protein of u 32.0 87 0.0019 26.1 4.4 62 40-103 59-120 (142)
273 cd01968 Nitrogenase_NifE_I Nit 32.0 2.2E+02 0.0048 28.3 8.3 25 146-173 356-380 (410)
274 PRK10353 3-methyl-adenine DNA 31.9 1.4E+02 0.0031 26.1 5.9 62 366-429 22-99 (187)
275 PF00862 Sucrose_synth: Sucros 31.9 97 0.0021 31.6 5.4 31 144-174 399-431 (550)
276 cd00561 CobA_CobO_BtuR ATP:cor 31.6 3.2E+02 0.007 23.2 10.4 62 42-106 4-66 (159)
277 COG0763 LpxB Lipid A disacchar 31.4 5E+02 0.011 25.5 10.1 112 41-176 2-120 (381)
278 PRK02155 ppnK NAD(+)/NADH kina 31.4 94 0.002 29.4 5.2 50 344-410 66-119 (291)
279 PRK08057 cobalt-precorrin-6x r 31.2 3.6E+02 0.0079 24.8 8.9 34 42-82 4-37 (248)
280 cd07035 TPP_PYR_POX_like Pyrim 31.1 69 0.0015 26.7 3.9 27 342-368 60-92 (155)
281 COG3245 CycB Cytochrome c5 [En 30.6 46 0.001 26.5 2.4 48 358-407 60-121 (126)
282 PRK06270 homoserine dehydrogen 30.5 1E+02 0.0022 29.9 5.4 59 332-391 80-150 (341)
283 PF01210 NAD_Gly3P_dh_N: NAD-d 29.8 45 0.00097 28.1 2.5 31 43-80 2-32 (157)
284 PRK06904 replicative DNA helic 29.5 1.9E+02 0.0041 29.5 7.3 42 42-85 223-265 (472)
285 COG3195 Uncharacterized protei 29.4 2.8E+02 0.006 23.7 6.9 54 373-427 110-164 (176)
286 COG2230 Cfa Cyclopropane fatty 29.4 40 0.00086 31.6 2.3 39 348-387 80-121 (283)
287 PF10087 DUF2325: Uncharacteri 29.4 1.1E+02 0.0023 23.4 4.4 36 146-181 48-89 (97)
288 PF01695 IstB_IS21: IstB-like 29.2 63 0.0014 28.0 3.4 45 40-86 47-91 (178)
289 PRK13982 bifunctional SbtC-lik 29.2 66 0.0014 32.7 3.9 39 40-80 256-306 (475)
290 PRK14077 pnk inorganic polypho 29.1 94 0.002 29.3 4.7 54 338-410 63-120 (287)
291 TIGR01283 nifE nitrogenase mol 29.1 3.5E+02 0.0075 27.4 9.2 25 146-173 395-419 (456)
292 KOG0780 Signal recognition par 29.1 1.1E+02 0.0023 30.2 5.0 43 40-84 100-143 (483)
293 PRK06222 ferredoxin-NADP(+) re 28.7 1.1E+02 0.0025 28.5 5.3 36 41-80 99-134 (281)
294 PRK05636 replicative DNA helic 28.7 1.7E+02 0.0038 30.0 6.9 42 42-85 267-309 (505)
295 cd01425 RPS2 Ribosomal protein 28.5 2.5E+02 0.0055 24.6 7.2 31 145-175 126-158 (193)
296 PLN02496 probable phosphopanto 28.4 90 0.0019 27.9 4.2 53 26-83 6-58 (209)
297 cd01977 Nitrogenase_VFe_alpha 28.4 2.6E+02 0.0056 27.9 8.1 95 39-173 287-382 (415)
298 COG1797 CobB Cobyrinic acid a, 28.3 71 0.0015 31.8 3.8 37 43-81 3-41 (451)
299 PF07015 VirC1: VirC1 protein; 28.2 1.5E+02 0.0033 26.9 5.7 39 42-82 3-42 (231)
300 TIGR00173 menD 2-succinyl-5-en 27.9 65 0.0014 32.3 3.7 26 342-367 64-95 (432)
301 TIGR00421 ubiX_pad polyprenyl 27.7 70 0.0015 27.8 3.4 36 43-81 2-37 (181)
302 PF06506 PrpR_N: Propionate ca 27.5 1.1E+02 0.0023 26.4 4.6 39 132-176 114-152 (176)
303 PRK08840 replicative DNA helic 27.3 3.5E+02 0.0076 27.5 8.8 42 42-85 219-261 (464)
304 PRK06732 phosphopantothenate-- 27.3 1.2E+02 0.0026 27.5 5.0 33 43-79 17-49 (229)
305 PRK12311 rpsB 30S ribosomal pr 27.1 83 0.0018 30.2 4.0 31 145-175 151-183 (326)
306 COG2109 BtuR ATP:corrinoid ade 27.1 4.4E+02 0.0095 23.2 8.0 103 42-157 30-133 (198)
307 PF04558 tRNA_synt_1c_R1: Glut 26.9 48 0.001 28.3 2.2 31 374-410 102-132 (164)
308 PRK01175 phosphoribosylformylg 26.9 5.1E+02 0.011 24.0 10.4 35 40-79 3-37 (261)
309 PRK05748 replicative DNA helic 26.8 3.5E+02 0.0076 27.2 8.8 42 42-85 205-247 (448)
310 PRK06276 acetolactate synthase 26.7 65 0.0014 33.8 3.6 27 342-368 64-96 (586)
311 PRK00881 purH bifunctional pho 26.6 1.5E+02 0.0033 30.4 5.9 88 55-155 15-105 (513)
312 PF09001 DUF1890: Domain of un 26.4 61 0.0013 26.7 2.5 25 54-80 13-37 (139)
313 PF09314 DUF1972: Domain of un 26.3 1.1E+02 0.0024 26.7 4.4 55 42-103 3-62 (185)
314 TIGR00355 purH phosphoribosyla 25.9 1.6E+02 0.0035 30.0 5.9 86 56-155 12-100 (511)
315 TIGR01501 MthylAspMutase methy 25.6 1.4E+02 0.0031 24.5 4.6 58 41-103 2-59 (134)
316 PRK09620 hypothetical protein; 25.4 95 0.0021 28.2 3.9 31 45-79 22-52 (229)
317 TIGR02113 coaC_strep phosphopa 25.2 1.1E+02 0.0025 26.4 4.2 36 42-80 2-37 (177)
318 cd00550 ArsA_ATPase Oxyanion-t 25.1 99 0.0021 28.4 4.1 37 42-80 1-38 (254)
319 PF12765 Cohesin_HEAT: HEAT re 25.0 1.6E+02 0.0035 18.6 3.8 31 391-421 10-40 (42)
320 COG0299 PurN Folate-dependent 24.9 1.6E+02 0.0036 25.9 5.0 30 145-174 28-57 (200)
321 PRK13604 luxD acyl transferase 24.7 1.4E+02 0.0031 28.4 5.1 35 40-76 36-70 (307)
322 COG4088 Predicted nucleotide k 24.6 91 0.002 28.0 3.4 35 42-78 3-37 (261)
323 TIGR01012 Sa_S2_E_A ribosomal 24.5 97 0.0021 27.4 3.7 30 146-175 108-139 (196)
324 PF12695 Abhydrolase_5: Alpha/ 24.2 1.8E+02 0.0039 23.2 5.2 35 43-79 1-35 (145)
325 COG0543 UbiB 2-polyprenylpheno 24.0 1.5E+02 0.0032 27.3 5.0 37 42-82 109-147 (252)
326 PRK07004 replicative DNA helic 24.0 4E+02 0.0086 27.1 8.5 42 42-85 215-257 (460)
327 PRK02649 ppnK inorganic polyph 23.9 1E+02 0.0022 29.4 4.0 52 342-410 69-124 (305)
328 PRK05632 phosphate acetyltrans 23.9 9.2E+02 0.02 25.9 12.1 34 42-77 4-38 (684)
329 TIGR02699 archaeo_AfpA archaeo 23.9 1.1E+02 0.0024 26.4 3.9 37 43-81 2-39 (174)
330 CHL00076 chlB photochlorophyll 23.8 1.1E+02 0.0023 31.7 4.4 27 145-174 373-399 (513)
331 COG0541 Ffh Signal recognition 23.8 1.6E+02 0.0036 29.4 5.4 41 42-84 102-142 (451)
332 PRK04020 rps2P 30S ribosomal p 23.7 1E+02 0.0022 27.4 3.7 30 146-175 114-145 (204)
333 PF07355 GRDB: Glycine/sarcosi 23.7 1.8E+02 0.0039 28.1 5.5 38 344-390 271-308 (349)
334 COG1703 ArgK Putative periplas 23.6 2E+02 0.0043 27.3 5.6 39 42-82 53-91 (323)
335 PRK07710 acetolactate synthase 23.5 62 0.0013 33.8 2.7 28 341-368 78-111 (571)
336 PRK13234 nifH nitrogenase redu 23.4 1.6E+02 0.0034 27.8 5.2 40 38-79 2-41 (295)
337 PRK14098 glycogen synthase; Pr 23.1 1.4E+02 0.0029 30.6 5.0 37 41-79 6-48 (489)
338 PF13450 NAD_binding_8: NAD(P) 23.1 97 0.0021 21.8 2.9 20 58-79 9-28 (68)
339 KOG2941 Beta-1,4-mannosyltrans 23.0 2.5E+02 0.0055 27.3 6.2 61 36-104 8-70 (444)
340 COG4081 Uncharacterized protei 23.0 1.4E+02 0.003 24.3 3.8 28 51-80 15-42 (148)
341 TIGR00521 coaBC_dfp phosphopan 22.9 1E+02 0.0022 30.5 3.9 39 40-81 3-41 (390)
342 PRK01911 ppnK inorganic polyph 22.9 1.4E+02 0.003 28.3 4.7 51 343-410 66-120 (292)
343 PRK04539 ppnK inorganic polyph 22.8 1.3E+02 0.0027 28.6 4.4 53 339-410 68-124 (296)
344 COG2099 CobK Precorrin-6x redu 22.8 6.1E+02 0.013 23.4 8.5 34 334-367 189-228 (257)
345 PRK10427 putative PTS system f 22.7 1.9E+02 0.0042 23.0 4.7 37 41-79 3-42 (114)
346 PF08897 DUF1841: Domain of un 22.7 54 0.0012 27.0 1.6 19 49-67 57-75 (137)
347 PRK10422 lipopolysaccharide co 22.7 2.5E+02 0.0053 27.1 6.6 27 146-175 262-289 (352)
348 cd01981 Pchlide_reductase_B Pc 22.6 1.2E+02 0.0027 30.3 4.5 28 145-175 369-396 (430)
349 TIGR00345 arsA arsenite-activa 22.6 2.6E+02 0.0056 26.2 6.5 22 58-81 3-24 (284)
350 cd02065 B12-binding_like B12 b 22.5 1.5E+02 0.0032 23.3 4.3 35 43-79 2-36 (125)
351 TIGR01278 DPOR_BchB light-inde 22.4 1.3E+02 0.0028 31.0 4.8 28 145-175 363-390 (511)
352 PRK02910 light-independent pro 22.4 1.3E+02 0.0028 31.1 4.7 27 145-174 361-387 (519)
353 PRK03378 ppnK inorganic polyph 22.3 1.3E+02 0.0028 28.5 4.3 51 343-410 65-119 (292)
354 cd02033 BchX Chlorophyllide re 22.2 2.1E+02 0.0044 27.7 5.7 43 36-80 26-69 (329)
355 PRK07206 hypothetical protein; 22.0 3.6E+02 0.0079 26.6 7.8 32 42-80 4-35 (416)
356 PLN02939 transferase, transfer 22.0 1.5E+02 0.0033 33.0 5.2 38 40-79 481-524 (977)
357 PF01497 Peripla_BP_2: Peripla 21.8 1.3E+02 0.0028 26.8 4.2 38 137-177 54-93 (238)
358 cd03466 Nitrogenase_NifN_2 Nit 21.7 1.4E+02 0.0031 29.9 4.8 27 145-174 371-397 (429)
359 COG0503 Apt Adenine/guanine ph 21.7 2E+02 0.0044 24.9 5.1 29 146-174 53-83 (179)
360 TIGR03880 KaiC_arch_3 KaiC dom 21.7 2.4E+02 0.0051 25.1 5.9 41 43-85 19-59 (224)
361 PTZ00318 NADH dehydrogenase-li 21.5 1E+02 0.0022 30.8 3.7 35 40-81 10-44 (424)
362 PRK14618 NAD(P)H-dependent gly 21.4 1.1E+02 0.0025 29.2 3.9 33 40-79 4-36 (328)
363 cd01147 HemV-2 Metal binding p 21.4 1.4E+02 0.0029 27.2 4.3 37 136-175 67-106 (262)
364 PF02310 B12-binding: B12 bind 21.4 1.8E+02 0.004 22.7 4.6 38 40-77 51-88 (121)
365 PRK05299 rpsB 30S ribosomal pr 21.2 1.2E+02 0.0027 28.0 3.8 31 145-175 156-188 (258)
366 PF12363 DUF3647: Phage protei 21.1 1.7E+02 0.0037 23.2 4.2 52 376-428 49-100 (113)
367 PF14626 RNase_Zc3h12a_2: Zc3h 21.0 1.1E+02 0.0023 24.5 2.9 31 54-86 9-39 (122)
368 PRK14501 putative bifunctional 21.0 92 0.002 33.7 3.5 74 329-410 348-428 (726)
369 PF06722 DUF1205: Protein of u 21.0 3.3E+02 0.0072 20.9 5.6 60 23-85 23-89 (97)
370 PRK06522 2-dehydropantoate 2-r 20.9 1E+02 0.0023 28.8 3.5 31 41-78 1-31 (304)
371 PRK03359 putative electron tra 20.8 1.6E+02 0.0035 27.3 4.5 104 49-175 29-147 (256)
372 PF01372 Melittin: Melittin; 20.7 24 0.00052 19.5 -0.5 17 350-366 1-17 (26)
373 PRK06456 acetolactate synthase 20.6 84 0.0018 32.8 3.0 28 341-368 68-101 (572)
374 PRK00054 dihydroorotate dehydr 20.6 1.7E+02 0.0038 26.6 4.8 37 40-80 102-138 (250)
375 PF07991 IlvN: Acetohydroxy ac 20.6 71 0.0015 27.3 2.0 50 40-103 4-55 (165)
376 PF09334 tRNA-synt_1g: tRNA sy 20.5 93 0.002 30.8 3.1 29 51-81 16-47 (391)
377 cd06559 Endonuclease_V Endonuc 20.4 1.2E+02 0.0025 27.2 3.4 30 145-174 92-128 (208)
378 TIGR02655 circ_KaiC circadian 20.4 6E+02 0.013 25.9 9.0 43 42-86 265-307 (484)
379 TIGR01007 eps_fam capsular exo 20.4 2.3E+02 0.005 24.7 5.4 37 41-79 17-55 (204)
380 PRK12921 2-dehydropantoate 2-r 20.3 1.1E+02 0.0023 28.8 3.5 31 41-78 1-31 (305)
381 PRK07414 cob(I)yrinic acid a,c 20.3 5.8E+02 0.012 22.2 9.6 41 37-79 18-58 (178)
382 TIGR00640 acid_CoA_mut_C methy 20.1 2.2E+02 0.0047 23.3 4.7 39 39-79 1-39 (132)
383 PF02572 CobA_CobO_BtuR: ATP:c 20.1 5.4E+02 0.012 22.2 7.3 37 41-79 4-40 (172)
384 PRK06719 precorrin-2 dehydroge 20.0 1.3E+02 0.0029 25.4 3.6 38 40-85 13-50 (157)
385 PRK14491 putative bifunctional 20.0 1.9E+02 0.0041 30.5 5.4 47 28-79 1-47 (597)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-61 Score=479.28 Aligned_cols=376 Identities=24% Similarity=0.325 Sum_probs=283.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHH
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLE 119 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~ 119 (434)
++||+++|+|++||++||++||+.|+.+ |+.|||++|+.+... .. .. ..+|+|..+|+++|++.... .....
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~--G~~VT~v~T~~n~~~--~~--~~-~~~i~~~~ip~glp~~~~~~-~~~~~ 78 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLK--GFSITIAQTKFNYFS--PS--DD-FTDFQFVTIPESLPESDFKN-LGPIE 78 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcC--CCEEEEEeCcccccc--cc--cC-CCCeEEEeCCCCCCcccccc-cCHHH
Confidence 6699999999999999999999999999 999999999864321 11 11 12799999999888642111 12334
Q ss_pred HHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhh--cCC
Q 013878 120 AVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFF--INS 197 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~ 197 (434)
++..+...+.+.+.+.++++......+++|||+|.++.|+.++|+++|||++.|++++++.++.+.++..+.... .+.
T Consensus 79 ~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 158 (451)
T PLN02410 79 FLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPL 158 (451)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCc
Confidence 444444445555666666654322346799999999999999999999999999999999988777654332210 010
Q ss_pred CCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhccC-C
Q 013878 198 SGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKV-P 276 (434)
Q Consensus 198 ~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~~~-~ 276 (434)
.. ...+... .+||+|+++..+++..... . ...+........ ....++++++||+++|| +.+++.++... +
T Consensus 159 ~~--~~~~~~~-~iPg~~~~~~~dlp~~~~~--~-~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE--~~~~~~l~~~~~~ 229 (451)
T PLN02410 159 KE--PKGQQNE-LVPEFHPLRCKDFPVSHWA--S-LESIMELYRNTV-DKRTASSVIINTASCLE--SSSLSRLQQQLQI 229 (451)
T ss_pred cc--cccCccc-cCCCCCCCChHHCcchhcC--C-cHHHHHHHHHHh-hcccCCEEEEeChHHhh--HHHHHHHHhccCC
Confidence 00 0011222 3899988888888754321 1 112222222222 34678899999999999 99999988765 5
Q ss_pred cEeeeccccCCCC-CCCCCcchhhhhhhhcCCCCCcc---e-------------eee-----------------------
Q 013878 277 SLLSVGFLTQPLS-PPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS----------------------- 316 (434)
Q Consensus 277 ~v~~vGpl~~~~~-~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la----------------------- 316 (434)
++++|||++.... ....+++..+|.+|||.+++++| | +++
T Consensus 230 ~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~ 309 (451)
T PLN02410 230 PVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSE 309 (451)
T ss_pred CEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccc
Confidence 8999999985432 11112222469999999887665 3 111
Q ss_pred --------eccccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEE
Q 013878 317 --------LALRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGV 388 (434)
Q Consensus 317 --------~~~~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 388 (434)
|.+++++|+++++|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+++++.||+|+
T Consensus 310 ~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~ 389 (451)
T PLN02410 310 WIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGI 389 (451)
T ss_pred hhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeE
Confidence 223356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 389 KVEGIVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 389 ~l~~~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
.++ +.+++++|+++|+++|.++ |++||+||+++++++++|+.+|
T Consensus 390 ~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~g 434 (451)
T PLN02410 390 QVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISG 434 (451)
T ss_pred EeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 997 6789999999999999886 7899999999999999998776
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.4e-61 Score=475.90 Aligned_cols=369 Identities=20% Similarity=0.297 Sum_probs=279.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCC-CCCccchH
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKN-ASTESNRL 118 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~-~~~~~~~~ 118 (434)
++||+++|+|++||++||++|||.|+.+ |+.|||++|+.+...+.+. ..++|+|+.+++++|++. +.+ .+..
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~--G~~vT~v~t~~~~~~~~~~----~~~~i~~~~ipdglp~~~~~~~-~~~~ 77 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSK--GFKTTHTLTTFIFNTIHLD----PSSPISIATISDGYDQGGFSSA-GSVP 77 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcC--CCEEEEEECCchhhhcccC----CCCCEEEEEcCCCCCCcccccc-cCHH
Confidence 4599999999999999999999999999 9999999999654443221 123699999999998732 332 3344
Q ss_pred HHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhhcCCC
Q 013878 119 EAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFINSS 198 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (434)
.++..+.+.+.+.+.+.++++... ..+.+|||+|.|+.|+.++|+++|||++.|++++++.+..+++. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~------- 148 (449)
T PLN02173 78 EYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YIN------- 148 (449)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhc-------
Confidence 555545444445555555554321 12349999999999999999999999999999988887665542 111
Q ss_pred CCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhccCCcE
Q 013878 199 GSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKVPSL 278 (434)
Q Consensus 199 ~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~~~~~v 278 (434)
..+..+. +||+|.++.++++.++... .........+.+..+....++++++||+++|| +.+++.++.. +++
T Consensus 149 ----~~~~~~~-~pg~p~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~~~~~-~~v 219 (449)
T PLN02173 149 ----NGSLTLP-IKDLPLLELQDLPTFVTPT-GSHLAYFEMVLQQFTNFDKADFVLVNSFHDLD--LHENELLSKV-CPV 219 (449)
T ss_pred ----cCCccCC-CCCCCCCChhhCChhhcCC-CCchHHHHHHHHHHhhhccCCEEEEeCHHHhh--HHHHHHHHhc-CCe
Confidence 1112233 7899888889998766432 22222223333444556789999999999999 9999888754 479
Q ss_pred eeeccccCCC-------CCCC----C-C-cchhhhhhhhcCCCCCcc---e-------------eee-------ec----
Q 013878 279 LSVGFLTQPL-------SPPP----L-P-PSIQMKLPAMVGQTKGKI---C-------------CVS-------LA---- 318 (434)
Q Consensus 279 ~~vGpl~~~~-------~~~~----~-~-~~~~~~~~~L~~~~~~~v---S-------------~la-------~~---- 318 (434)
+.|||+++.. .... . . ++..+|.+|||.+++++| | +++ |+
T Consensus 220 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr 299 (449)
T PLN02173 220 LTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVR 299 (449)
T ss_pred eEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEe
Confidence 9999997421 0000 0 0 122459999999887755 3 111 22
Q ss_pred ------------ccc-CCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHc
Q 013878 319 ------------LRT-SGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWG 385 (434)
Q Consensus 319 ------------~~~-~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 385 (434)
+++ ++|+++.+|+||.+||+|++|++|||||||||++||+.+|||||+||+++||+.||+++++.||
T Consensus 300 ~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g 379 (449)
T PLN02173 300 ASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWK 379 (449)
T ss_pred ccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhC
Confidence 223 4667888999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCC----CcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 386 IGVKVEGI----VLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 386 ~G~~l~~~----~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+|+.+..+ .++.++|+++|+++|+++ |+++|+||+++++++++|+.+|
T Consensus 380 ~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~g 432 (449)
T PLN02173 380 VGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEG 432 (449)
T ss_pred ceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998532 369999999999999887 8899999999999999999876
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.1e-60 Score=473.02 Aligned_cols=381 Identities=20% Similarity=0.275 Sum_probs=282.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccc-c-C----CC-CCCeEEEEcCCCCCCCCCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSAS-K-S----RL-PDNIKVYDIEDGVPMKNAS 112 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~-~-~----~~-~~gi~f~~l~~~~~~~~~~ 112 (434)
++||+++|+|++||++||++||+.|+.+ |..|||++|+.+...+.+.. . + .. ...++|..+++++|++.+.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~--G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~ 84 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASK--GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPR 84 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhC--CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccc
Confidence 5699999999999999999999999999 99999999996554443211 0 0 00 1137788788888766543
Q ss_pred CccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhh
Q 013878 113 TESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQ 192 (434)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 192 (434)
. .+...++..+.+.+.+.+.+.++++... ..+++|||+|.++.|+.++|+++|||++.|++++++.++.+.+...-..
T Consensus 85 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~ 162 (480)
T PLN02555 85 R-QDLDLYLPQLELVGKREIPNLVKRYAEQ-GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLV 162 (480)
T ss_pred c-cCHHHHHHHHHHhhhHHHHHHHHHHhcc-CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCC
Confidence 2 2333444444434444555555554221 2345999999999999999999999999999999999888776531100
Q ss_pred hhcCCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhh
Q 013878 193 FFINSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLN 272 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~ 272 (434)
. ++. ..+.+.++. +||+|.++.++++.++... .....+...+.+..+....++++++||+++|| +.+++.++
T Consensus 163 ~-~~~---~~~~~~~~~-iPglp~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE--~~~~~~l~ 234 (480)
T PLN02555 163 P-FPT---ETEPEIDVQ-LPCMPLLKYDEIPSFLHPS-SPYPFLRRAILGQYKNLDKPFCILIDTFQELE--KEIIDYMS 234 (480)
T ss_pred C-ccc---ccCCCceee-cCCCCCcCHhhCcccccCC-CCchHHHHHHHHHHHhcccCCEEEEEchHHHh--HHHHHHHh
Confidence 0 110 001123354 8999989999998765421 11222223333444556788999999999999 99998887
Q ss_pred ccCCcEeeeccccCCCCC--C---C-CCcchhhhhhhhcCCCCCcc---e-------------eee---------ecc--
Q 013878 273 SKVPSLLSVGFLTQPLSP--P---P-LPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LAL-- 319 (434)
Q Consensus 273 ~~~~~v~~vGpl~~~~~~--~---~-~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~-- 319 (434)
...| ++.|||++..... . . ..+...+|.+|||.+++++| | +++ |+|
T Consensus 235 ~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 235 KLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred hCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 6555 9999999753211 1 0 01112469999999877544 3 111 333
Q ss_pred --------------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHH
Q 013878 320 --------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARL 379 (434)
Q Consensus 320 --------------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 379 (434)
++++|+++++|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||++
T Consensus 314 ~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 393 (480)
T PLN02555 314 RPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVY 393 (480)
T ss_pred ecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHH
Confidence 234688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccEEEEc-----CCCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 380 VEEVWGIGVKVE-----GIVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 380 v~~~~G~G~~l~-----~~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+++.||+|+.+. .+.+++++|+++|+++|+++ |+++|+||++|++++++|+.+|
T Consensus 394 ~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~eg 453 (480)
T PLN02555 394 LVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEG 453 (480)
T ss_pred HHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999993 34689999999999999876 8999999999999999999876
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.7e-60 Score=466.42 Aligned_cols=370 Identities=18% Similarity=0.321 Sum_probs=278.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHh-cCCCcEEEEeecCCc-cccccccccCCCCCCeEEEEcCCCCCCCCCCCccch
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLAS-AAPNLKFSFFSTKKS-NDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNR 117 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~-r~~Gh~Vt~~t~~~~-~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~ 117 (434)
++||+++|+|++||++||++||+.|+. + |+.|||++|+.+ ...+.+. ... .++++|+.+++++|++......+.
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~--G~~vT~v~t~~~~~~~~~~~-~~~-~~~i~~~~i~dglp~g~~~~~~~~ 78 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTT--GTRVTFATCLSVIHRSMIPN-HNN-VENLSFLTFSDGFDDGVISNTDDV 78 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCC--CcEEEEEeccchhhhhhhcc-CCC-CCCEEEEEcCCCCCCccccccccH
Confidence 569999999999999999999999995 7 999999999853 2222111 111 136999999998887643322344
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhhcCC
Q 013878 118 LEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFINS 197 (434)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (434)
...+..+.+.+.+.+.+.++++... ..+++|||+|.++.|+.++|+++|||++.|++++++.++.+++...
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~l~~~-~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~-------- 149 (455)
T PLN02152 79 QNRLVNFERNGDKALSDFIEANLNG-DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST-------- 149 (455)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhcc-CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc--------
Confidence 4455555555666677777665322 1356999999999999999999999999999999999888766431
Q ss_pred CCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCC--CCcEEEEcchhhhccchhhhhhhhccC
Q 013878 198 SGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLP--QGSTAVINFYQELYCSSQLTNDLNSKV 275 (434)
Q Consensus 198 ~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~~s~~~le~~~~~~~~~~~~~ 275 (434)
.....+. +||+|.++.++++.++... .....+.....+..+... .++++++||+++|| +.+++.++.
T Consensus 150 -----~~~~~~~-iPglp~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~l~~-- 218 (455)
T PLN02152 150 -----GNNSVFE-FPNLPSLEIRDLPSFLSPS-NTNKAAQAVYQELMEFLKEESNPKILVNTFDSLE--PEFLTAIPN-- 218 (455)
T ss_pred -----cCCCeee-cCCCCCCchHHCchhhcCC-CCchhHHHHHHHHHHHhhhccCCEEEEeChHHhh--HHHHHhhhc--
Confidence 0112333 8999888889998876432 222222233323333222 35799999999999 999888865
Q ss_pred CcEeeeccccCCCC---CC--C---CCcchhhhhhhhcCCCCCcc---e-------------eee---------ecc---
Q 013878 276 PSLLSVGFLTQPLS---PP--P---LPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LAL--- 319 (434)
Q Consensus 276 ~~v~~vGpl~~~~~---~~--~---~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~--- 319 (434)
.+++.|||+.+... .. . ..++..+|.+|||.+++.+| | +++ |+|
T Consensus 219 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 219 IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 26999999975321 10 0 01222469999999876554 3 111 222
Q ss_pred -------------------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChH
Q 013878 320 -------------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHR 374 (434)
Q Consensus 320 -------------------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 374 (434)
++++|+++.+|+||.+||+|++|++|||||||||++||+++|||+|++|+++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 2456788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccEEEEcC---CCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 375 MNARLVEEVWGIGVKVEG---IVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 375 ~na~~v~~~~G~G~~l~~---~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
.||+++++.||+|+.+.. +.+++|+|+++|+++|++++.+||+||+++++++++|+++|
T Consensus 379 ~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~g 440 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEG 440 (455)
T ss_pred HHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999998899988842 34699999999999998645679999999999999999876
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-59 Score=464.65 Aligned_cols=376 Identities=17% Similarity=0.250 Sum_probs=274.4
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCcc
Q 013878 36 QSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTES 115 (434)
Q Consensus 36 ~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~ 115 (434)
-|..++||+++|+|++||++||++||+.|+.+ |++|||+|++.+..++.+. .+.. .+|+|+.+|++++.+. . .
T Consensus 2 ~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~--G~~VT~vtt~~~~~~~~~~-~~~~-~~i~~v~lp~g~~~~~--~-~ 74 (448)
T PLN02562 2 KVTQRPKIILVPYPAQGHVTPMLKLASAFLSR--GFEPVVITPEFIHRRISAT-LDPK-LGITFMSISDGQDDDP--P-R 74 (448)
T ss_pred CCCCCcEEEEEcCccccCHHHHHHHHHHHHhC--CCEEEEEeCcchhhhhhhc-cCCC-CCEEEEECCCCCCCCc--c-c
Confidence 46677899999999999999999999999999 9999999999765544432 1111 3799999998765321 1 1
Q ss_pred chHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhh-
Q 013878 116 NRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFF- 194 (434)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~- 194 (434)
+...+...+...+.+.+.+.++++.. ..+++|||+|.++.|+.++|+++|||++.|++++++.+..+.+.+......
T Consensus 75 ~~~~l~~a~~~~~~~~l~~ll~~l~~--~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 75 DFFSIENSMENTMPPQLERLLHKLDE--DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred cHHHHHHHHHHhchHHHHHHHHHhcC--CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 22222222222233334444443321 124589999999999999999999999999999988888776654332210
Q ss_pred cCCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhh--
Q 013878 195 INSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLN-- 272 (434)
Q Consensus 195 ~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~-- 272 (434)
++..+ ......++..+||+|.++.++++.++... ...........+..+....++++++||+++|| +.+++..+
T Consensus 153 ~~~~~-~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~~~~~ 228 (448)
T PLN02562 153 ISETG-CPRQLEKICVLPEQPLLSTEDLPWLIGTP-KARKARFKFWTRTLERTKSLRWILMNSFKDEE--YDDVKNHQAS 228 (448)
T ss_pred ccccc-ccccccccccCCCCCCCChhhCcchhcCC-CcchHHHHHHHHHHhccccCCEEEEcChhhhC--HHHHHHHHhh
Confidence 11000 00011223248999888889998765422 11222223333444556778999999999999 88777654
Q ss_pred ---ccCCcEeeeccccCCCCC----CC-CCcchhhhhhhhcCCCCCcc---e---e---ee-----------------ec
Q 013878 273 ---SKVPSLLSVGFLTQPLSP----PP-LPPSIQMKLPAMVGQTKGKI---C---C---VS-----------------LA 318 (434)
Q Consensus 273 ---~~~~~v~~vGpl~~~~~~----~~-~~~~~~~~~~~L~~~~~~~v---S---~---la-----------------~~ 318 (434)
+..|+++.|||++..... .. .+++ .+|.+|||++++++| | . +. |+
T Consensus 229 ~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~-~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 229 YNNGQNPQILQIGPLHNQEATTITKPSFWEED-MSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred hccccCCCEEEecCcccccccccCCCccccch-HHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 345789999999864321 11 1223 569999999877544 2 1 11 33
Q ss_pred c----------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHH
Q 013878 319 L----------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEE 382 (434)
Q Consensus 319 ~----------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 382 (434)
| ++++|+++++|+||.+||+|++|++||||||||||+||+++|||+|+||+++||+.||+++++
T Consensus 308 W~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~ 387 (448)
T PLN02562 308 WVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD 387 (448)
T ss_pred EEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH
Confidence 2 245789999999999999999999999999999999999999999999999999999999988
Q ss_pred HHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 013878 383 VWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEA 429 (434)
Q Consensus 383 ~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a 429 (434)
.||+|+.++ ++++++|+++|+++|+| ++||+||++++++++++
T Consensus 388 ~~g~g~~~~--~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~ 430 (448)
T PLN02562 388 VWKIGVRIS--GFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE 430 (448)
T ss_pred HhCceeEeC--CCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc
Confidence 789999984 57999999999999998 99999999999998887
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-59 Score=462.08 Aligned_cols=381 Identities=16% Similarity=0.245 Sum_probs=276.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCC--cEEEEeecCCccccccccccC---CCCCCeEEEEcCCCCCCCC-CCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPN--LKFSFFSTKKSNDSLLSASKS---RLPDNIKVYDIEDGVPMKN-AST 113 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~G--h~Vt~~t~~~~~~~~~~~~~~---~~~~gi~f~~l~~~~~~~~-~~~ 113 (434)
++||+|+|+|++||++||++||+.|+.+ | +.|||++++.+.....+.... ....+|+|+.+|+...... ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~--gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQ--DDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhC--CCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 6799999999999999999999999999 7 999999998643111111111 1112699999996432111 111
Q ss_pred ccchHHHHHHHHHhcchhHHHHHHHHHhcc--C-CCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhh
Q 013878 114 ESNRLEAVELLQKATPENFKKGLNAAVFET--G-RKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLI 190 (434)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~-~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~ 190 (434)
.+....+..+.+...+.+++.++++++.. + .+++|||+|.++.|+.++|+++|||++.|++++++.++.+.+.+..
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 -QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred -cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 23333333344444455566666665532 1 2349999999999999999999999999999999888877765432
Q ss_pred hhhhcCCCCCccCCCCcccccCCC-CCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhh
Q 013878 191 HQFFINSSGSLRLEDQTLDIIPGL-SMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTN 269 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~pgl-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~ 269 (434)
....... .....+..+. +||+ ++++..+++.++... . .+..+. +......+++++++||+++|| +++++
T Consensus 160 ~~~~~~~--~~~~~~~~~~-vPgl~~~l~~~dlp~~~~~~-~---~~~~~~-~~~~~~~~~~~vlvNtf~~LE--~~~~~ 229 (468)
T PLN02207 160 HSKDTSV--FVRNSEEMLS-IPGFVNPVPANVLPSALFVE-D---GYDAYV-KLAILFTKANGILVNSSFDIE--PYSVN 229 (468)
T ss_pred ccccccc--CcCCCCCeEE-CCCCCCCCChHHCcchhcCC-c---cHHHHH-HHHHhcccCCEEEEEchHHHh--HHHHH
Confidence 2110000 0001122344 8998 579999998766422 1 122222 333356789999999999999 99888
Q ss_pred hhhc--cCCcEeeeccccCCCCCCCC---CcchhhhhhhhcCCCCCcc---e-------------eee---------ecc
Q 013878 270 DLNS--KVPSLLSVGFLTQPLSPPPL---PPSIQMKLPAMVGQTKGKI---C-------------CVS---------LAL 319 (434)
Q Consensus 270 ~~~~--~~~~v~~vGpl~~~~~~~~~---~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~ 319 (434)
.++. ..|+++.|||++........ ..+..+|.+|||.+++.+| | +++ |+|
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 8743 56789999999864321111 0122469999999877555 3 111 222
Q ss_pred -------------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHH
Q 013878 320 -------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLV 380 (434)
Q Consensus 320 -------------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 380 (434)
++++|+++++|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+++
T Consensus 310 ~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 389 (468)
T PLN02207 310 SLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLM 389 (468)
T ss_pred EEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHH
Confidence 3567888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccEEEEc-------CCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 381 EEVWGIGVKVE-------GIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 381 ~~~~G~G~~l~-------~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
++.||+|+.+. .+.++.++|+++|+++|++|+++||+||+++++++++|+.+|
T Consensus 390 ~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~G 449 (468)
T PLN02207 390 VKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNG 449 (468)
T ss_pred HHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 88779999773 134699999999999997335899999999999999999876
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5e-59 Score=464.61 Aligned_cols=383 Identities=19% Similarity=0.214 Sum_probs=276.6
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC----CCCCCCCCCC
Q 013878 38 SSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE----DGVPMKNAST 113 (434)
Q Consensus 38 ~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~----~~~~~~~~~~ 113 (434)
.+++||+++|+|++||++||++|||.|+.+ |+.|||++|+.+..++.+.. ... .+++++.++ +++|++.+++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~--G~~VTfv~T~~n~~~~~~~~-~~~-~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALR--GLTITVLVTPKNLPFLNPLL-SKH-PSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC--CCEEEEEeCCCcHHHHhhhc-ccC-CCeeEEeCCCCCcCCCCCCCcCh
Confidence 347899999999999999999999999999 99999999997655554321 111 268877654 2566665544
Q ss_pred ccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhh
Q 013878 114 ESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQF 193 (434)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
...+.+....+..+. ..+.+.+++++++...+|+|||+|.++.|+.++|+++|||++.|++++++.++.+.++..-...
T Consensus 83 ~~~~~~~~~~~~~a~-~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 83 KDLPPSGFPLMIHAL-GELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhcchhhHHHHHHHH-HHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 322333333333333 2344445555544334679999999999999999999999999999999999988875421100
Q ss_pred hcCCCCCccCCCCc--ccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhh
Q 013878 194 FINSSGSLRLEDQT--LDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDL 271 (434)
Q Consensus 194 ~~~~~~~~~~~~~~--~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~ 271 (434)
.... .+.... +..+||++.++..+++.+++.. ...........+.......++++++||+++|| +.+++.+
T Consensus 162 ~~~~----~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~~ 234 (477)
T PLN02863 162 KINP----DDQNEILSFSKIPNCPKYPWWQISSLYRSY-VEGDPAWEFIKDSFRANIASWGLVVNSFTELE--GIYLEHL 234 (477)
T ss_pred cccc----cccccccccCCCCCCCCcChHhCchhhhcc-CccchHHHHHHHHHhhhccCCEEEEecHHHHH--HHHHHHH
Confidence 0000 011112 2347899888889988766422 11122223333333334577889999999999 9999999
Q ss_pred hccC--CcEeeeccccCCCCCC-------C-CCcchhhhhhhhcCCCCCcc---e-------------eee---------
Q 013878 272 NSKV--PSLLSVGFLTQPLSPP-------P-LPPSIQMKLPAMVGQTKGKI---C-------------CVS--------- 316 (434)
Q Consensus 272 ~~~~--~~v~~vGpl~~~~~~~-------~-~~~~~~~~~~~L~~~~~~~v---S-------------~la--------- 316 (434)
++.+ ++++.|||++...... . ...+..+|.+|||.+++.+| | +++
T Consensus 235 ~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 235 KKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred HhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 8764 6899999997533110 0 00012469999999876554 3 111
Q ss_pred ecccc---------------------CCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChH
Q 013878 317 LALRT---------------------SGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHR 374 (434)
Q Consensus 317 ~~~~~---------------------~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 374 (434)
|+|.+ .++++++ +|+||.+||+|++|++|||||||||++||+++|||+|+||+++||+
T Consensus 315 flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 394 (477)
T PLN02863 315 FIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQF 394 (477)
T ss_pred EEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccch
Confidence 22221 1234555 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccEEEEcC---CCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 375 MNARLVEEVWGIGVKVEG---IVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 375 ~na~~v~~~~G~G~~l~~---~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
.||+++++.||+|+++.. ..++.++++++|+++|.+ +++||+||+++++++++|+++|
T Consensus 395 ~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~-~~~~r~~a~~l~e~a~~Av~~g 455 (477)
T PLN02863 395 VNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE-NQVERERAKELRRAALDAIKER 455 (477)
T ss_pred hhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHhccC
Confidence 999999887899999943 346899999999999942 3999999999999999998776
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.6e-59 Score=462.88 Aligned_cols=373 Identities=23% Similarity=0.373 Sum_probs=278.6
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHH--HHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCcc
Q 013878 38 SSEQHVAVLAFRFGSHGLTIFNLMLK--LASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTES 115 (434)
Q Consensus 38 ~~~~~Ill~~~~~~GHv~P~l~La~~--L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~ 115 (434)
.++.||+|+|+|++||++||++||++ |++| |++|||++++.+...+.+. ... ...+++..+++++|++.. .
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~--G~~VT~v~t~~~~~~~~~~-~~~-~~~~~~~~~~~glp~~~~---~ 78 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSK--NLHFTLATTEQARDLLSTV-EKP-RRPVDLVFFSDGLPKDDP---R 78 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcC--CcEEEEEeccchhhhhccc-cCC-CCceEEEECCCCCCCCcc---c
Confidence 34679999999999999999999999 5688 9999999999765554321 111 136888888888876542 2
Q ss_pred chHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhhc
Q 013878 116 NRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFI 195 (434)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
+...++..+.+ .+.+.++++++. .+|||||+|.++.|+..+|+++|||++.|++.+++.+..+.+....... +
T Consensus 79 ~~~~~~~~~~~----~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~-~ 151 (456)
T PLN02210 79 APETLLKSLNK----VGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNS-F 151 (456)
T ss_pred CHHHHHHHHHH----hhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCC-C
Confidence 23333333332 334445555554 3699999999999999999999999999999999888877664321111 1
Q ss_pred CCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhccC
Q 013878 196 NSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKV 275 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~~~ 275 (434)
+. ..+....+. +||++.++.++++..+... ....+.....+..+....++++++||+++|| +.+++.+++.
T Consensus 152 ~~---~~~~~~~~~-~Pgl~~~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~l~~~- 222 (456)
T PLN02210 152 PD---LEDLNQTVE-LPALPLLEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELE--SEIIESMADL- 222 (456)
T ss_pred Cc---ccccCCeee-CCCCCCCChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHh--HHHHHHHhhc-
Confidence 11 001112234 8899888888888765432 1222333333444455678899999999999 9999988763
Q ss_pred CcEeeeccccCC----CCC-C-------CCCcchhhhhhhhcCCCCCcc---e-------------eee---------ec
Q 013878 276 PSLLSVGFLTQP----LSP-P-------PLPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LA 318 (434)
Q Consensus 276 ~~v~~vGpl~~~----~~~-~-------~~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~ 318 (434)
+++++|||++.. ... . ...++..+|.+|||.+++.+| | +++ |+
T Consensus 223 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~fl 302 (456)
T PLN02210 223 KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFL 302 (456)
T ss_pred CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 689999999742 111 0 001122569999999876544 3 111 33
Q ss_pred c----------------cc-CCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHH
Q 013878 319 L----------------RT-SGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVE 381 (434)
Q Consensus 319 ~----------------~~-~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 381 (434)
| +. ++|++|++|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||++++
T Consensus 303 w~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 303 WVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred EEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 2 12 377888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHccEEEEcC----CCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 382 EVWGIGVKVEG----IVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 382 ~~~G~G~~l~~----~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+.||+|+.++. +.+++++|+++|+++|.++ |+++|+||++|++.+++|+.+|
T Consensus 383 ~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~g 439 (456)
T PLN02210 383 DVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPG 439 (456)
T ss_pred HHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 86699999963 3689999999999999887 8899999999999999999886
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-59 Score=462.77 Aligned_cols=382 Identities=19% Similarity=0.308 Sum_probs=278.3
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccccccc--CCCCCCeEEEEcC-----CCCCC
Q 013878 36 QSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASK--SRLPDNIKVYDIE-----DGVPM 108 (434)
Q Consensus 36 ~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~--~~~~~gi~f~~l~-----~~~~~ 108 (434)
+|++++||+++|+|++||++||++||+.|+.+ |+.|||++|+.+..++.+... ...+..|+|+.++ +++|+
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~--G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~ 81 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAER--GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI 81 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhC--CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC
Confidence 45566799999999999999999999999999 999999999975444433210 0111248999987 68887
Q ss_pred CCCCCccchH-HHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhh
Q 013878 109 KNASTESNRL-EAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHT 187 (434)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~ 187 (434)
+.+.+...+. .+...+...+ ..+++.++++++....+|+|||+|.++.|+.++|+++|||++.|++++++.+..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 82 GCENLDTLPSRDLLRKFYDAV-DKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred CccccccCCcHHHHHHHHHHH-HHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 6554322222 3333333333 3466667777665335789999999999999999999999999999999887765443
Q ss_pred hhhhhhh-cCCCCCccCCCCcccccCCCCC---cccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhcc
Q 013878 188 GLIHQFF-INSSGSLRLEDQTLDIIPGLSM---MRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYC 263 (434)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~~~pglp~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~ 263 (434)
....... .+ +...++. +||+|. ++..+++..+... . ....+...+......++++++||+++||
T Consensus 161 ~~~~~~~~~~------~~~~~~~-iPg~p~~~~l~~~dlp~~~~~~-~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE- 228 (491)
T PLN02534 161 RLHNAHLSVS------SDSEPFV-VPGMPQSIEITRAQLPGAFVSL-P---DLDDVRNKMREAESTAFGVVVNSFNELE- 228 (491)
T ss_pred HHhcccccCC------CCCceee-cCCCCccccccHHHCChhhcCc-c---cHHHHHHHHHhhcccCCEEEEecHHHhh-
Confidence 2111100 11 1223444 788874 6777777654321 1 1222222333233457799999999999
Q ss_pred chhhhhhhhccC-CcEeeeccccCCCCC-------C-CCCcchhhhhhhhcCCCCCcc---e-------------eee--
Q 013878 264 SSQLTNDLNSKV-PSLLSVGFLTQPLSP-------P-PLPPSIQMKLPAMVGQTKGKI---C-------------CVS-- 316 (434)
Q Consensus 264 ~~~~~~~~~~~~-~~v~~vGpl~~~~~~-------~-~~~~~~~~~~~~L~~~~~~~v---S-------------~la-- 316 (434)
+.+++.++... ++++.|||++..... . ....+..+|++|||.+++.+| | +++
T Consensus 229 -~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~g 307 (491)
T PLN02534 229 -HGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLG 307 (491)
T ss_pred -HHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 99999887765 589999999753210 0 001122469999999987555 3 111
Q ss_pred -------ecc----------------------ccCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCccccc
Q 013878 317 -------LAL----------------------RTSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMIC 366 (434)
Q Consensus 317 -------~~~----------------------~~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~ 366 (434)
|+| ++.++++++ +|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 308 l~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 308 LEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred HHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 222 223445555 99999999999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHccEEEEcC------------C-CcCHHHHHHHHHHHhc--cC-cHHHHHHHHHHHHHHHHHh
Q 013878 367 RPFFGDHRMNARLVEEVWGIGVKVEG------------I-VLTKSGVLQSLELMFS--HE-GKKMRENVRHLKEIVIEAA 430 (434)
Q Consensus 367 ~P~~~DQ~~na~~v~~~~G~G~~l~~------------~-~~~~~~l~~av~~ll~--~~-~~~~r~~a~~l~~~~~~a~ 430 (434)
+|+++||+.||+++++.||+|+++.. + .+++++|+++|+++|. +| |+++|+||++|++++++|+
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av 467 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM 467 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998831 1 3799999999999997 34 8999999999999999999
Q ss_pred CCC
Q 013878 431 GPK 433 (434)
Q Consensus 431 ~~g 433 (434)
.+|
T Consensus 468 ~~G 470 (491)
T PLN02534 468 ELG 470 (491)
T ss_pred cCC
Confidence 876
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.7e-59 Score=462.57 Aligned_cols=380 Identities=19% Similarity=0.258 Sum_probs=272.0
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC----CCCCCCCC
Q 013878 36 QSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE----DGVPMKNA 111 (434)
Q Consensus 36 ~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~----~~~~~~~~ 111 (434)
.|+.++||+++|+|++||++||++|||.|+.| |+.|||++++.+..++.+. ......+|+|+.++ +++|++.+
T Consensus 2 ~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~--G~~vT~v~t~~n~~~~~~~-~~~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 2 KREEVLHVAMFPWLAMGHLIPFLRLSKLLAQK--GHKISFISTPRNLHRLPKI-PSQLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CCCCCcEEEEeCChhhhHHHHHHHHHHHHHhC--CCEEEEEeCCchHHhhhhc-cccCCCCeeEEECCCCccCCCCCCcc
Confidence 35567899999999999999999999999999 9999999999755444321 11122369999987 67776654
Q ss_pred CCccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhh
Q 013878 112 STESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIH 191 (434)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 191 (434)
.+.+..... ..+.......+++.++++++.. +++|||+|.++.|+.++|+++|||++.|++++++.++.+.+.....
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 79 SSTDVPYTK-QQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred cccccchhh-HHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 432221111 1122222344666677776553 6899999999999999999999999999999998888866543221
Q ss_pred hhh-cCCCCCccCCCCcccccCCC----CC--cccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccc
Q 013878 192 QFF-INSSGSLRLEDQTLDIIPGL----SM--MRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCS 264 (434)
Q Consensus 192 ~~~-~~~~~~~~~~~~~~~~~pgl----p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~ 264 (434)
... .+ .....+..+|+. +. ++.++++.++.........+.... +.......++++++||+++||
T Consensus 156 ~~~~~~------~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE-- 226 (472)
T PLN02670 156 EGGDLR------STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFE-- 226 (472)
T ss_pred hcccCC------CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHh--
Confidence 110 11 111111113443 21 445677765532101112222222 333345678899999999999
Q ss_pred hhhhhhhhccC-CcEeeeccccCCC-C-CC-C-CC-cchhhhhhhhcCCCCCcc---e-------------eee------
Q 013878 265 SQLTNDLNSKV-PSLLSVGFLTQPL-S-PP-P-LP-PSIQMKLPAMVGQTKGKI---C-------------CVS------ 316 (434)
Q Consensus 265 ~~~~~~~~~~~-~~v~~vGpl~~~~-~-~~-~-~~-~~~~~~~~~L~~~~~~~v---S-------------~la------ 316 (434)
+.+++.++... ++++.|||+.... . .. . .. ..+.+|.+|||.+++.+| | +|+
T Consensus 227 ~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 227 PEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 99999998764 5899999997531 1 11 0 00 112469999999876554 3 111
Q ss_pred ---eccc----------------------cCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCc
Q 013878 317 ---LALR----------------------TSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFF 370 (434)
Q Consensus 317 ---~~~~----------------------~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~ 370 (434)
|+|. +.++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||++
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 3332 23445665 999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccEEEEcC----CCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhC
Q 013878 371 GDHRMNARLVEEVWGIGVKVEG----IVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAG 431 (434)
Q Consensus 371 ~DQ~~na~~v~~~~G~G~~l~~----~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~ 431 (434)
+||+.||+++++. |+|+.++. +.++.++|+++|+++|.++ |++||+||+++++.+++..+
T Consensus 387 ~DQ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~ 451 (472)
T PLN02670 387 NEQGLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDR 451 (472)
T ss_pred hccHHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcch
Confidence 9999999999875 99999964 3489999999999999886 78999999999999987543
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-58 Score=455.21 Aligned_cols=365 Identities=18% Similarity=0.242 Sum_probs=271.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCC--CCeEEEEcC--CCCCCCCCCCc
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLP--DNIKVYDIE--DGVPMKNASTE 114 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~--~gi~f~~l~--~~~~~~~~~~~ 114 (434)
.++||+++|+|++||++||++||+.|+.+ |+.|||++|+.+...+.+. ...+ ..+.++++| +++|++.+++.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~--g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~ 79 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK--GHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVS 79 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC--CCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccc
Confidence 36799999999999999999999999999 9999999999754433321 1111 137777787 67877655443
Q ss_pred cchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhh
Q 013878 115 SNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFF 194 (434)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 194 (434)
+.+.+....+..++ ..+++.++++++.. +|+|||+|+ +.|+.++|+++|||++.|++++++.++.+.+. ..
T Consensus 80 ~~~~~~~~~~~~a~-~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~----~~- 150 (453)
T PLN02764 80 EIPVTSADLLMSAM-DLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVP----GG- 150 (453)
T ss_pred cCChhHHHHHHHHH-HHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc----cc-
Confidence 33333333344433 34566667766553 679999995 89999999999999999999999888876531 00
Q ss_pred cCCCCCccCCCCcccccCCCCC----cccccccchhcc-CCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhh
Q 013878 195 INSSGSLRLEDQTLDIIPGLSM----MRISDLSDEILW-GDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTN 269 (434)
Q Consensus 195 ~~~~~~~~~~~~~~~~~pglp~----~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~ 269 (434)
.. ... .||+|. ++.++++..... .......+.....++.+....++++++||+++|| +.+++
T Consensus 151 --------~~--~~~-~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE--~~~~~ 217 (453)
T PLN02764 151 --------EL--GVP-PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIE--GNFCD 217 (453)
T ss_pred --------cC--CCC-CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhh--HHHHH
Confidence 00 012 477763 555666653221 1011112334444444556788999999999999 99999
Q ss_pred hhhccC-CcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee----------------
Q 013878 270 DLNSKV-PSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS---------------- 316 (434)
Q Consensus 270 ~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la---------------- 316 (434)
.+++.. ++++.|||++....... .+..+|.+|||.|++.+| | +++
T Consensus 218 ~~~~~~~~~v~~VGPL~~~~~~~~--~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 218 YIEKHCRKKVLLTGPVFPEPDKTR--ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred HHHhhcCCcEEEeccCccCccccc--cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 987753 57999999975431111 112569999999988876 3 111
Q ss_pred --------------eccccCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHH
Q 013878 317 --------------LALRTSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVE 381 (434)
Q Consensus 317 --------------~~~~~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 381 (434)
|.++++++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||++++
T Consensus 296 ~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 296 PRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 333455778877 99999999999999999999999999999999999999999999999999998
Q ss_pred HHHccEEEEcCC---CcCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHHhC
Q 013878 382 EVWGIGVKVEGI---VLTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEAAG 431 (434)
Q Consensus 382 ~~~G~G~~l~~~---~~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a~~ 431 (434)
+.||+|+.+..+ .++.++|+++|+++|++ | |+++|+||+++++++++++.
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GS 431 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGL 431 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCC
Confidence 767999998532 58999999999999987 4 78899999999999987754
No 12
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.2e-59 Score=458.97 Aligned_cols=362 Identities=20% Similarity=0.258 Sum_probs=267.8
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC----CCCCCCCCC
Q 013878 37 SSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE----DGVPMKNAS 112 (434)
Q Consensus 37 ~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~----~~~~~~~~~ 112 (434)
|.+++||+|+|+|++||++||++|||.|+++ |++|||++++.+...+.+.. ..+.+++|..++ +++|++.+.
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~--G~~VT~vtt~~~~~~i~~~~--~~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEK--GHRVTFFLPKKAHKQLQPLN--LFPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhC--CCEEEEEeCCchhhhhcccc--cCCCceEEEEecCCCcCCCCCcccc
Confidence 5568899999999999999999999999999 99999999997655554332 122358885553 677766443
Q ss_pred CccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhh
Q 013878 113 TESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQ 192 (434)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 192 (434)
..+.+......+... ...+.+.++++++. .+|||||+|. +.|+.++|+++|||++.|++++++.++.+.++. .
T Consensus 77 ~~~l~~~~~~~~~~a-~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~---~ 149 (446)
T PLN00414 77 ASDLPNSTKKPIFDA-MDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR---A 149 (446)
T ss_pred cccchhhHHHHHHHH-HHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH---h
Confidence 322222222223332 24566777776654 3689999995 899999999999999999999998888766521 1
Q ss_pred hhcCCCCCccCCCCcccccCCCCC----cccccc--cchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchh
Q 013878 193 FFINSSGSLRLEDQTLDIIPGLSM----MRISDL--SDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQ 266 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~pglp~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~ 266 (434)
. .+ .. +||+|. ++..+. +.++. .. .....+..+...+++++++||+++|| +.
T Consensus 150 ~----------~~--~~-~pg~p~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~vlvNTf~eLE--~~ 207 (446)
T PLN00414 150 E----------LG--FP-PPDYPLSKVALRGHDANVCSLFA---NS----HELFGLITKGLKNCDVVSIRTCVELE--GN 207 (446)
T ss_pred h----------cC--CC-CCCCCCCcCcCchhhcccchhhc---cc----HHHHHHHHHhhccCCEEEEechHHHH--HH
Confidence 0 01 11 456653 222221 12111 11 12222333445678999999999999 99
Q ss_pred hhhhhhccC-CcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee-------------
Q 013878 267 LTNDLNSKV-PSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS------------- 316 (434)
Q Consensus 267 ~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la------------- 316 (434)
+++.++... ++++.|||+...........++.+|++|||.+++.+| | +++
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwv 287 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIA 287 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 999888764 4799999997543211111122469999999998877 3 111
Q ss_pred -----------------eccccCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHH
Q 013878 317 -----------------LALRTSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNAR 378 (434)
Q Consensus 317 -----------------~~~~~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 378 (434)
|.++++++++|+ +|+||.+||+|++|++|||||||||++||+++|||+|+||+++||+.||+
T Consensus 288 vr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~ 367 (446)
T PLN00414 288 VMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITR 367 (446)
T ss_pred EecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHH
Confidence 344567888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccEEEEcCC---CcCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHHhC
Q 013878 379 LVEEVWGIGVKVEGI---VLTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEAAG 431 (434)
Q Consensus 379 ~v~~~~G~G~~l~~~---~~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a~~ 431 (434)
++++.||+|+.++.+ .+++++|+++|+++|++ | |+++|+||+++++.+.+.++
T Consensus 368 ~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg 426 (446)
T PLN00414 368 LLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGL 426 (446)
T ss_pred HHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCC
Confidence 998767999999643 48999999999999976 4 77899999999999866654
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-58 Score=454.42 Aligned_cols=379 Identities=18% Similarity=0.234 Sum_probs=270.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCC--cEEEE--eecCCcccccccc--ccCCCCCCeEEEEcCCCCCCCCCCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPN--LKFSF--FSTKKSNDSLLSA--SKSRLPDNIKVYDIEDGVPMKNAST 113 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~G--h~Vt~--~t~~~~~~~~~~~--~~~~~~~gi~f~~l~~~~~~~~~~~ 113 (434)
+.||+++|+|++||++||++||+.|+.+ | +.||+ ++++.+...+.+. ......++|+|+.+|++.+.+....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~--g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK--NPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC--CCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 4599999999999999999999999999 7 45554 5554321111110 0011123699999997764222211
Q ss_pred c-cchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhh
Q 013878 114 E-SNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQ 192 (434)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 192 (434)
. .+....+..+.....+.+.+.++++.. +.+++|||+|.++.|+.++|+++|||++.|++++++.++.+.+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1 122223322333333445555554421 1346999999999999999999999999999999999998877543221
Q ss_pred hhcCCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhh
Q 013878 193 FFINSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLN 272 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~ 272 (434)
.. +. ........+. +||+|.++.++++.+++.. . ........+.......++++++||+++|| +.+++.++
T Consensus 159 ~~-~~--~~~~~~~~v~-iPg~p~l~~~dlp~~~~~~-~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE--~~~l~~l~ 229 (451)
T PLN03004 159 TT-PG--KNLKDIPTVH-IPGVPPMKGSDMPKAVLER-D--DEVYDVFIMFGKQLSKSSGIIINTFDALE--NRAIKAIT 229 (451)
T ss_pred cc-cc--cccccCCeec-CCCCCCCChHHCchhhcCC-c--hHHHHHHHHHHHhhcccCeeeeeeHHHhH--HHHHHHHH
Confidence 10 00 0001112244 8999999999999866532 1 22223333444456678899999999999 99999987
Q ss_pred ccC--CcEeeeccccCCCCCC-CCCcchhhhhhhhcCCCCCcc---e-------------eee---------ecccc---
Q 013878 273 SKV--PSLLSVGFLTQPLSPP-PLPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LALRT--- 321 (434)
Q Consensus 273 ~~~--~~v~~vGpl~~~~~~~-~~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~~~--- 321 (434)
+.. ++++.|||++...... ....+..+|.+|||.+++.+| | +|+ |+|..
T Consensus 230 ~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~ 309 (451)
T PLN03004 230 EELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNP 309 (451)
T ss_pred hcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 752 5899999997532111 111122469999999877655 3 111 33221
Q ss_pred ----------------------CCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHH
Q 013878 322 ----------------------SGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNAR 378 (434)
Q Consensus 322 ----------------------~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 378 (434)
.++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+
T Consensus 310 ~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~ 389 (451)
T PLN03004 310 PELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRV 389 (451)
T ss_pred ccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHH
Confidence 2245554 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccEEEEcCC---CcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 379 LVEEVWGIGVKVEGI---VLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 379 ~v~~~~G~G~~l~~~---~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
++++.||+|+.++.+ .+++++|+++|+++|++ ++||+||++++++.++|+.+|
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~G 445 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTET 445 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCC
Confidence 999877999999643 57999999999999998 999999999999999999886
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-58 Score=457.94 Aligned_cols=361 Identities=20% Similarity=0.316 Sum_probs=262.5
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEc--C--CCCCCCCCC
Q 013878 37 SSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDI--E--DGVPMKNAS 112 (434)
Q Consensus 37 ~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l--~--~~~~~~~~~ 112 (434)
|..++||+++|+|++||++|+++||+.|+++ |++|||+|++.+...+.+.+ ..+.++++..+ + +++|++.+.
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~--G~~VT~vtt~~~~~~i~~~~--a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEK--GHRVTFLLPKKAQKQLEHHN--LFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhC--CCEEEEEeccchhhhhhccc--CCCCceEEEEeCCCCccCCCCCccc
Confidence 4567899999999999999999999999999 99999999987665554431 12235666654 3 567766543
Q ss_pred CccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhh
Q 013878 113 TESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQ 192 (434)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 192 (434)
+ .+....+..++....+.+.+.++++++.. ++||||+| ++.|+.++|+++|||++.|++++++.++ +.+.+.
T Consensus 77 ~-~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 77 T-SDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 2 12221222222222345666677766553 68999999 6899999999999999999999888654 443221
Q ss_pred hhcCCCCCccCCCCcccccCCCCC----cccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhh
Q 013878 193 FFINSSGSLRLEDQTLDIIPGLSM----MRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLT 268 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~pglp~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~ 268 (434)
. ... .. +||+|. ++..+++.+ . .....+.....++.+....++++++||+++|| +.++
T Consensus 149 ~---------~~~--~~-~pglp~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE--~~~~ 210 (442)
T PLN02208 149 G---------KLG--VP-PPGYPSSKVLFRENDAHAL---A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIE--GKFC 210 (442)
T ss_pred c---------ccC--CC-CCCCCCcccccCHHHcCcc---c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHH--HHHH
Confidence 0 001 12 577764 345556542 1 11222333333343456689999999999999 9999
Q ss_pred hhhhccC-CcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee-----------eccc
Q 013878 269 NDLNSKV-PSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS-----------LALR 320 (434)
Q Consensus 269 ~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la-----------~~~~ 320 (434)
+.++... |+++.|||++....... +.+ .+|.+|||.+++.+| | +++ +.++
T Consensus 211 ~~~~~~~~~~v~~vGpl~~~~~~~~-~~~-~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r 288 (442)
T PLN02208 211 DYISRQYHKKVLLTGPMFPEPDTSK-PLE-EQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVK 288 (442)
T ss_pred HHHHhhcCCCEEEEeecccCcCCCC-CCH-HHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 8886653 78999999986432111 112 459999999877554 3 111 1112
Q ss_pred -----------cC--------CCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHH
Q 013878 321 -----------TS--------GRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLV 380 (434)
Q Consensus 321 -----------~~--------~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 380 (434)
++ ++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+++
T Consensus 289 ~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~ 368 (442)
T PLN02208 289 PPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLM 368 (442)
T ss_pred CCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHH
Confidence 22 245555 9999999999999999999999999999999999999999999999999998
Q ss_pred HHHHccEEEEcCCC---cCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHH
Q 013878 381 EEVWGIGVKVEGIV---LTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEA 429 (434)
Q Consensus 381 ~~~~G~G~~l~~~~---~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a 429 (434)
++.||+|+.++.++ +++++|+++|+++|++ | |+++|+||+++++++.+.
T Consensus 369 ~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~ 423 (442)
T PLN02208 369 TEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSP 423 (442)
T ss_pred HHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcC
Confidence 88779999997543 8999999999999976 3 788999999999998653
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.9e-58 Score=458.89 Aligned_cols=382 Identities=23% Similarity=0.311 Sum_probs=281.9
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccch
Q 013878 38 SSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNR 117 (434)
Q Consensus 38 ~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~ 117 (434)
+.+.||+++|+|++||++||++||++|+.+++||+|||++++.+...+.+.. . +.+++|+.+++++|.+.... .+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~--~-~~gi~fv~lp~~~p~~~~~~-~~~ 83 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP--K-PDNIRFATIPNVIPSELVRA-ADF 83 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC--C-CCCEEEEECCCCCCCccccc-cCH
Confidence 4577999999999999999999999999765699999999998766655431 1 24799999998776544322 233
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhh-cC
Q 013878 118 LEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFF-IN 196 (434)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~-~~ 196 (434)
..++..+.+ .+.+.++++++....++||||+|.++.|+..+|+++|||++.+++++++.++.+.+........ .+
T Consensus 84 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 84 PGFLEAVMT----KMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHHHHH----HhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 333333322 2444455555443346899999999999999999999999999999998888776654332110 11
Q ss_pred CCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhccCC
Q 013878 197 SSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSKVP 276 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~~~~ 276 (434)
.. .....+..+..+||++.++..+++..+.. ... .......+.......++.+++||+++|| +.+++.+++..+
T Consensus 160 ~~-~~~~~~~~~~~iPg~~~l~~~dlp~~~~~--~~~-~~~~~~~~~~~~~~~~~~vlvNTf~eLE--~~~~~~l~~~~~ 233 (459)
T PLN02448 160 VE-LSESGEERVDYIPGLSSTRLSDLPPIFHG--NSR-RVLKRILEAFSWVPKAQYLLFTSFYELE--AQAIDALKSKFP 233 (459)
T ss_pred Cc-cccccCCccccCCCCCCCChHHCchhhcC--Cch-HHHHHHHHHHhhcccCCEEEEccHHHhh--HHHHHHHHhhcC
Confidence 00 00001122334888888888888865532 212 2223333444455678899999999999 998998877654
Q ss_pred -cEeeeccccCCCCCC----CCC--cchhhhhhhhcCCCCCcc---e-------------eee---------ecc-----
Q 013878 277 -SLLSVGFLTQPLSPP----PLP--PSIQMKLPAMVGQTKGKI---C-------------CVS---------LAL----- 319 (434)
Q Consensus 277 -~v~~vGpl~~~~~~~----~~~--~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~----- 319 (434)
+++.|||+....... ..+ ++..+|..||+.+++++| | +++ |+|
T Consensus 234 ~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~ 313 (459)
T PLN02448 234 FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE 313 (459)
T ss_pred CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 899999997532111 000 111369999999876543 3 111 222
Q ss_pred ------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC-
Q 013878 320 ------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG- 392 (434)
Q Consensus 320 ------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~- 392 (434)
+.++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+..
T Consensus 314 ~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~ 393 (459)
T PLN02448 314 ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKRE 393 (459)
T ss_pred hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecc
Confidence 2346888889999999999999999999999999999999999999999999999999999998899999852
Q ss_pred ----CCcCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 393 ----IVLTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 393 ----~~~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+.+++++|+++|+++|++ + |++||+||+++++++++|+.+|
T Consensus 394 ~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~g 441 (459)
T PLN02448 394 VGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKG 441 (459)
T ss_pred cccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 357999999999999985 3 7899999999999999999876
No 16
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.2e-58 Score=454.69 Aligned_cols=369 Identities=20% Similarity=0.316 Sum_probs=269.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC----CCCCCCCCC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED----GVPMKNAST 113 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~----~~~~~~~~~ 113 (434)
.++||+++|+|++||++||++|||.|+ .+ |++|||++++.+...+.+... . ..+|+++.+|+ ++++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~--g~~vT~v~t~~n~~~~~~~~~-~-~~~i~~~~lp~p~~~glp~~~--- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANH--GFHVTVFVLETDAASAQSKFL-N-STGVDIVGLPSPDISGLVDPS--- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCC--CcEEEEEeCCCchhhhhhccc-c-CCCceEEECCCccccCCCCCC---
Confidence 377999999999999999999999998 68 999999999965433322211 1 12689998874 333111
Q ss_pred ccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhh
Q 013878 114 ESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQF 193 (434)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
......+..... .+.+.+++++++...+|+|||+|.++.|+.++|+++|||++.|++++++.++.+.+.+.+...
T Consensus 77 -~~~~~~~~~~~~----~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 77 -AHVVTKIGVIMR----EAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred -ccHHHHHHHHHH----HhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 111112222222 234445555443334789999999999999999999999999999999888776665432211
Q ss_pred hcCCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhc
Q 013878 194 FINSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNS 273 (434)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~ 273 (434)
... .....+.++. +||+|.++..+++..+... . . .......+.......++++++||+++|| +.+++.++.
T Consensus 152 -~~~--~~~~~~~~~~-iPg~~~l~~~dlp~~~~~~-~-~-~~~~~~~~~~~~~~~a~gvlvNTf~eLE--~~~l~~l~~ 222 (481)
T PLN02992 152 -IKE--EHTVQRKPLA-MPGCEPVRFEDTLDAYLVP-D-E-PVYRDFVRHGLAYPKADGILVNTWEEME--PKSLKSLQD 222 (481)
T ss_pred -ccc--ccccCCCCcc-cCCCCccCHHHhhHhhcCC-C-c-HHHHHHHHHHHhcccCCEEEEechHHHh--HHHHHHHhh
Confidence 000 0001112343 8999988888888644332 1 1 2223333444456789999999999999 999988764
Q ss_pred c-------CCcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee---------ecccc
Q 013878 274 K-------VPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LALRT 321 (434)
Q Consensus 274 ~-------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~~~ 321 (434)
. .++++.|||++...... .++ .+|.+|||.+++.+| | +|+ |+|..
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~~--~~~-~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQSS--KTD-HPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred ccccccccCCceEEecCccCCcCCC--cch-HHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2 25799999997542211 122 469999999877655 3 111 33332
Q ss_pred ------------------------------------CCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCccc
Q 013878 322 ------------------------------------SGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLM 364 (434)
Q Consensus 322 ------------------------------------~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~ 364 (434)
.++++++ +|+||.+||+|++|++|||||||||++||+++||||
T Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~ 379 (481)
T PLN02992 300 RPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPM 379 (481)
T ss_pred eCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCE
Confidence 1234555 999999999999999999999999999999999999
Q ss_pred ccCCCcCChHHHHHHHHHHHccEEEEcC--CCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhC
Q 013878 365 ICRPFFGDHRMNARLVEEVWGIGVKVEG--IVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAG 431 (434)
Q Consensus 365 v~~P~~~DQ~~na~~v~~~~G~G~~l~~--~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~ 431 (434)
|+||+++||+.||+++++.||+|+.++. +.++.++|+++|+++|.++ |+++|+||+++++++++|+.
T Consensus 380 l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~ 449 (481)
T PLN02992 380 IAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLS 449 (481)
T ss_pred EecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999755699999975 4589999999999999887 88999999999999999984
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-57 Score=456.30 Aligned_cols=375 Identities=19% Similarity=0.278 Sum_probs=271.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCC----cEEEEeecCCccc----ccccccc--CCCCCCeEEEEcCCCCC-C
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPN----LKFSFFSTKKSND----SLLSASK--SRLPDNIKVYDIEDGVP-M 108 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~G----h~Vt~~t~~~~~~----~~~~~~~--~~~~~gi~f~~l~~~~~-~ 108 (434)
|+||+|+|+|++||++||++||+.|+.+ | +.|||++++.... .+.+... .....+|+|+.+|++.+ +
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~--g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS--SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC--CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 7799999999999999999999999998 6 8999999875321 1211100 01112699999997642 2
Q ss_pred CCCCCccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhh
Q 013878 109 KNASTESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTG 188 (434)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~ 188 (434)
+.+ +...++..+... +.+.++++++....+++|||+|.++.|+.++|+++|||++.|++++++.++.+.+.+
T Consensus 81 ~~e----~~~~~~~~~~~~----~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 81 DAA----GVEEFISRYIQL----HAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred ccc----cHHHHHHHHHHh----hhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 221 222333333333 344444444432235699999999999999999999999999999999998888764
Q ss_pred hhhhhhcCCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhh
Q 013878 189 LIHQFFINSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLT 268 (434)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~ 268 (434)
...... .. .......++. +||+|.++..+++.++... . ...+. ......+....++++++||+++|| +.++
T Consensus 153 ~~~~~~-~~--~~~~~~~~~~-iPGlp~l~~~dlp~~~~~~-~-~~~~~-~~~~~~~~~~~~~~vlvNTf~eLE--~~~~ 223 (480)
T PLN00164 153 ALDEEV-AV--EFEEMEGAVD-VPGLPPVPASSLPAPVMDK-K-SPNYA-WFVYHGRRFMEAAGIIVNTAAELE--PGVL 223 (480)
T ss_pred hhcccc-cC--cccccCccee-cCCCCCCChHHCCchhcCC-C-cHHHH-HHHHHHHhhhhcCEEEEechHHhh--HHHH
Confidence 432110 00 0001112344 8999988999998765432 1 12222 222233445678999999999999 9999
Q ss_pred hhhhcc-------CCcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee---------
Q 013878 269 NDLNSK-------VPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS--------- 316 (434)
Q Consensus 269 ~~~~~~-------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la--------- 316 (434)
+.++.. .++++.|||++..........+..+|.+|||++++.+| | +++
T Consensus 224 ~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~ 303 (480)
T PLN00164 224 AAIADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHR 303 (480)
T ss_pred HHHHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 888764 26899999997432111111222569999999877654 3 111
Q ss_pred eccc----------------------------cCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccC
Q 013878 317 LALR----------------------------TSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICR 367 (434)
Q Consensus 317 ~~~~----------------------------~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~ 367 (434)
|+|. +.++++++ +|+||.+||+|++|++|||||||||++||+++|||||+|
T Consensus 304 flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 304 FLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred EEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 3322 12345666 999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHccEEEEcC-----CCcCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 368 PFFGDHRMNARLVEEVWGIGVKVEG-----IVLTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 368 P~~~DQ~~na~~v~~~~G~G~~l~~-----~~~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
|+++||+.||+++++.||+|+.++. +.+++++|+++|+++|.+ + |+++|+||+++++++++|+.+|
T Consensus 384 P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~g 457 (480)
T PLN00164 384 PLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEG 457 (480)
T ss_pred CccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998877799999852 247999999999999976 2 7889999999999999998876
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.3e-57 Score=445.65 Aligned_cols=377 Identities=20% Similarity=0.285 Sum_probs=271.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccc-ccccCCC--CCCeEEEEcCCCCCCCCCCCccc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLL-SASKSRL--PDNIKVYDIEDGVPMKNASTESN 116 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~-~~~~~~~--~~gi~f~~l~~~~~~~~~~~~~~ 116 (434)
++||+++|+|++||++||++||+.|+.+. |..|||++++.....+. +...... ..+|+|+.+|+...++......+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~-g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVL-NIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCC-CCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 67999999999999999999999999642 89999999886443321 1111111 12699999985322221011012
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCC-eEeEcCchhhHHHHhhhhhhhhhhhc
Q 013878 117 RLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIP-WLPVFVAMPYNVSAHIHTGLIHQFFI 195 (434)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
....+....+. +.+.++++++....+++|||+|.++.|+.++|+++||| ++.+++++++.+..+++++......
T Consensus 82 ~~~~~~~~~~~----~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~- 156 (470)
T PLN03015 82 IFTKMVVKMRA----MKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV- 156 (470)
T ss_pred HHHHHHHHHHh----chHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc-
Confidence 22222222223 33444444443324689999999999999999999999 5888888888877777655432211
Q ss_pred CCCCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccchhhhhhhhcc-
Q 013878 196 NSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSSQLTNDLNSK- 274 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~~~~~~- 274 (434)
.. ...+.+.++. +||+|.++..+++..+..+ . ...+.... +..+....++++++||+++|| +.+++.++..
T Consensus 157 ~~--~~~~~~~~~~-vPg~p~l~~~dlp~~~~~~-~-~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE--~~~~~~l~~~~ 228 (470)
T PLN03015 157 EG--EYVDIKEPLK-IPGCKPVGPKELMETMLDR-S-DQQYKECV-RSGLEVPMSDGVLVNTWEELQ--GNTLAALREDM 228 (470)
T ss_pred cc--ccCCCCCeee-CCCCCCCChHHCCHhhcCC-C-cHHHHHHH-HHHHhcccCCEEEEechHHHh--HHHHHHHHhhc
Confidence 11 0001123344 8999999999998765432 2 12232333 333456789999999999999 9999988764
Q ss_pred ------CCcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc---e-------------eee---------eccc---
Q 013878 275 ------VPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI---C-------------CVS---------LALR--- 320 (434)
Q Consensus 275 ------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v---S-------------~la---------~~~~--- 320 (434)
.+++++|||++.... .. +++.+|.+|||.+++.+| | +|+ |+|.
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~--~~-~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNV--HV-EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred ccccccCCceEEecCCCCCcc--cc-cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 256999999984321 11 122469999999877665 3 121 3332
Q ss_pred --------------------------cCCCceee-ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCCh
Q 013878 321 --------------------------TSGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDH 373 (434)
Q Consensus 321 --------------------------~~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 373 (434)
+.++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||+++||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 22345555 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccEEEEc----CCCcCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 374 RMNARLVEEVWGIGVKVE----GIVLTKSGVLQSLELMFSH--E-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 374 ~~na~~v~~~~G~G~~l~----~~~~~~~~l~~av~~ll~~--~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+.||+++++.||+|+++. .+.+++++|+++|+++|.+ | |+++|+||+++++++++|+++|
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eG 452 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHG 452 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999988889999995 2468999999999999952 4 8999999999999999999876
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3e-57 Score=454.85 Aligned_cols=375 Identities=19% Similarity=0.233 Sum_probs=272.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCC--cEEEEeecCCcccccc--cccc---CC-CCCCeEEEEcCCCCCCCCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPN--LKFSFFSTKKSNDSLL--SASK---SR-LPDNIKVYDIEDGVPMKNA 111 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~G--h~Vt~~t~~~~~~~~~--~~~~---~~-~~~gi~f~~l~~~~~~~~~ 111 (434)
|+||+++|+|++||++||++|||.|+.+ | ..|||++|+.+..++. +... .. ..++|+|+.+|++.+++.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~--G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS--DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC--CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-
Confidence 6799999999999999999999999999 8 8999999986543221 1001 01 122699999987654221
Q ss_pred CCccchHHHHHHHHHhcchhHHHHHHHHHhcc---C-CCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhh
Q 013878 112 STESNRLEAVELLQKATPENFKKGLNAAVFET---G-RKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHT 187 (434)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~-~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~ 187 (434)
.. . .+..+...+.+.+.+.+++++... . .+.+|||+|.++.|+.++|+++|||++.|++++++.++.+.+.
T Consensus 79 ---~~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 79 ---ED-P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred ---cc-h-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 11 1 222233334455666667665431 1 2348999999999999999999999999999999999988876
Q ss_pred hhhhhhh-cCCCCCccCCCCcccccCCCC-CcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccch
Q 013878 188 GLIHQFF-INSSGSLRLEDQTLDIIPGLS-MMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSS 265 (434)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~~~pglp-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~ 265 (434)
+...... .+. ....+....+. +||++ +++..+++..+.. . .+.....+.......++++++||+++|| +
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~v~-iPgl~~pl~~~dlp~~~~~----~-~~~~~~~~~~~~~~~~~gvlvNt~~eLe--~ 224 (481)
T PLN02554 154 QMLYDEKKYDV-SELEDSEVELD-VPSLTRPYPVKCLPSVLLS----K-EWLPLFLAQARRFREMKGILVNTVAELE--P 224 (481)
T ss_pred hhhccccccCc-cccCCCCceeE-CCCCCCCCCHHHCCCcccC----H-HHHHHHHHHHHhcccCCEEEEechHHHh--H
Confidence 5432210 000 00001112344 89985 6888888765431 1 2223333444556789999999999999 9
Q ss_pred hhhhhhhc---cCCcEeeeccccC-CCCCCC-CCcchhhhhhhhcCCCCCcc---e-------------eee--------
Q 013878 266 QLTNDLNS---KVPSLLSVGFLTQ-PLSPPP-LPPSIQMKLPAMVGQTKGKI---C-------------CVS-------- 316 (434)
Q Consensus 266 ~~~~~~~~---~~~~v~~vGpl~~-~~~~~~-~~~~~~~~~~~L~~~~~~~v---S-------------~la-------- 316 (434)
.+...++. ..|+++.|||++. ...... ..+...+|.+|||++++.+| | +++
T Consensus 225 ~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 225 QALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred HHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 88877764 4578999999943 222111 01112469999999876544 3 111
Q ss_pred -ecc------------------------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccc
Q 013878 317 -LAL------------------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMI 365 (434)
Q Consensus 317 -~~~------------------------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v 365 (434)
|+| ++++|+++++|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 322 1345787889999999999999999999999999999999999999
Q ss_pred cCCCcCChHHHHHHHHHHHccEEEEcC-----------CCcCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 366 CRPFFGDHRMNARLVEEVWGIGVKVEG-----------IVLTKSGVLQSLELMFS-HEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 366 ~~P~~~DQ~~na~~v~~~~G~G~~l~~-----------~~~~~~~l~~av~~ll~-~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+||+++||+.||+++++.||+|+.++. +.+++++|+++|+++|+ + ++||+||+++++++++|..+|
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~g 462 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDG 462 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999765555699999853 46899999999999997 6 899999999999999998776
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.1e-57 Score=452.51 Aligned_cols=382 Identities=17% Similarity=0.226 Sum_probs=269.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCc---EEEEeecCCccc-cc---cccccCCCCCCeEEEEcCCCC-CCCC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNL---KFSFFSTKKSND-SL---LSASKSRLPDNIKVYDIEDGV-PMKN 110 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh---~Vt~~t~~~~~~-~~---~~~~~~~~~~gi~f~~l~~~~-~~~~ 110 (434)
+++||+++|+|++||++||++|||.|+.+ |. .||+++++.... .. .+... ...++|+|+.+|++. +++.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~--G~~~t~vt~~~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL--DRRIHTITILYWSLPFAPQADAFLKSLI-ASEPRIRLVTLPEVQDPPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC--CCCeEEEEEEECCCCcchhhhHHHhhcc-cCCCCeEEEECCCCCCCccc
Confidence 47799999999999999999999999999 83 567766543211 11 11101 111369999998754 2111
Q ss_pred CCCccchHHHHHHHHHhcchhHHHHHHHHHhcc---CC-CccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhh
Q 013878 111 ASTESNRLEAVELLQKATPENFKKGLNAAVFET---GR-KISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIH 186 (434)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~-~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~ 186 (434)
+.........+..+.+.+.+.+.+.++++.... +. +++|||+|.|+.|+.++|+++|||++.|++++++.++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 111112222333344444555677777664321 12 45999999999999999999999999999999998888776
Q ss_pred hhhhhhhhcCCCCCccCCCCcccccCCCC-CcccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchhhhccch
Q 013878 187 TGLIHQFFINSSGSLRLEDQTLDIIPGLS-MMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQELYCSS 265 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~pglp-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~ 265 (434)
.+.......... .....+.++. +||++ .++..+++..+... . . .....+..+....++++++||+++|| +
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~~~~-iPgl~~~l~~~dlp~~~~~~-~---~-~~~~~~~~~~~~~a~~vlvNTf~eLE--~ 229 (475)
T PLN02167 159 LPERHRKTASEF-DLSSGEEELP-IPGFVNSVPTKVLPPGLFMK-E---S-YEAWVEIAERFPEAKGILVNSFTELE--P 229 (475)
T ss_pred HHHhcccccccc-ccCCCCCeeE-CCCCCCCCChhhCchhhhCc-c---h-HHHHHHHHHhhcccCEeeeccHHHHH--H
Confidence 543221100000 0001123344 89984 58888887654321 1 1 12222333456778999999999999 9
Q ss_pred hhhhhhhcc---CCcEeeeccccCCCCC--CCCC-cchhhhhhhhcCCCCCcc---e-------------eee-------
Q 013878 266 QLTNDLNSK---VPSLLSVGFLTQPLSP--PPLP-PSIQMKLPAMVGQTKGKI---C-------------CVS------- 316 (434)
Q Consensus 266 ~~~~~~~~~---~~~v~~vGpl~~~~~~--~~~~-~~~~~~~~~L~~~~~~~v---S-------------~la------- 316 (434)
++++.++.. .|++++|||++..... ...+ .+..+|.+|||.+++.+| | +++
T Consensus 230 ~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 230 NAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 999888654 4789999999864321 1111 122569999999876544 3 111
Q ss_pred --ecc----------------------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCC
Q 013878 317 --LAL----------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGD 372 (434)
Q Consensus 317 --~~~----------------------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 372 (434)
|+| ++.+|+++++|+||.+||+|++|++|||||||||++||+++|||||+||+++|
T Consensus 310 ~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 389 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAE 389 (475)
T ss_pred CcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 222 22344677899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccEEEEcC-------CCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 373 HRMNARLVEEVWGIGVKVEG-------IVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 373 Q~~na~~v~~~~G~G~~l~~-------~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
|+.||+++.+.||+|+.++. +.+++++|+++|+++|+++ ++||+||+++++.+++|+.+|
T Consensus 390 Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 390 QQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred chhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCC
Confidence 99999886666799999853 3579999999999999762 589999999999999999876
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.1e-56 Score=448.11 Aligned_cols=375 Identities=19% Similarity=0.265 Sum_probs=269.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccC------CCCCCeEEEEcC---CCCCCCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKS------RLPDNIKVYDIE---DGVPMKN 110 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~------~~~~gi~f~~l~---~~~~~~~ 110 (434)
++||+++|+|++||++|+++||++|+.| |++|||++++.+...+.+.... .....+.+.++| +++|++.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~r--G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSR--GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhC--CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 5699999999999999999999999999 9999999999766554432110 111145556666 4676654
Q ss_pred CCCcc-------chHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHH
Q 013878 111 ASTES-------NRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSA 183 (434)
Q Consensus 111 ~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~ 183 (434)
+.... ....+...+.. ..+.+.+.++++++. .+|||||+|.++.|+..+|+++|||++.|++++++.++.
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred ccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 43311 12233433432 334566777777654 378999999999999999999999999999999888776
Q ss_pred hhhhhhhhhh-hcCCCCCccCCCCcccccCCCCC---cccccccchhccCCCcchHHHHHHHHhhccCCCCcEEEEcchh
Q 013878 184 HIHTGLIHQF-FINSSGSLRLEDQTLDIIPGLSM---MRISDLSDEILWGDSRESLFSSMLSKLGGVLPQGSTAVINFYQ 259 (434)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pglp~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~ 259 (434)
+.+....... ..+ +....+. +||+|. ++..+++.. .....+............+++++++||++
T Consensus 160 ~~~~~~~~~~~~~~------~~~~~~~-~pg~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~ 227 (482)
T PLN03007 160 SYCIRVHKPQKKVA------SSSEPFV-IPDLPGDIVITEEQINDA-----DEESPMGKFMKEVRESEVKSFGVLVNSFY 227 (482)
T ss_pred HHHHHhcccccccC------CCCceee-CCCCCCccccCHHhcCCC-----CCchhHHHHHHHHHhhcccCCEEEEECHH
Confidence 5543221100 000 1112233 677763 333334321 11222334444555556788999999999
Q ss_pred hhccchhhhhhhhccC-CcEeeeccccCCCCC-------C-CCCcchhhhhhhhcCCCCCcc---e-------------e
Q 013878 260 ELYCSSQLTNDLNSKV-PSLLSVGFLTQPLSP-------P-PLPPSIQMKLPAMVGQTKGKI---C-------------C 314 (434)
Q Consensus 260 ~le~~~~~~~~~~~~~-~~v~~vGpl~~~~~~-------~-~~~~~~~~~~~~L~~~~~~~v---S-------------~ 314 (434)
+|| +++.+.+++.. +++++|||+...... . ....+..+|.+|||.+++.+| | +
T Consensus 228 ~le--~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 305 (482)
T PLN03007 228 ELE--SAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFE 305 (482)
T ss_pred HHH--HHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHH
Confidence 999 98888887665 479999998643211 0 011122569999999876544 3 1
Q ss_pred ee---------eccc-------------cC--------CCc-eeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcc
Q 013878 315 VS---------LALR-------------TS--------GRG-KIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVL 363 (434)
Q Consensus 315 la---------~~~~-------------~~--------~~~-~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP 363 (434)
++ |+|. ++ +++ ++.+|+||.+||+|++|++|||||||||++||+++|||
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP 385 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLP 385 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCC
Confidence 11 2221 22 234 44599999999999999999999999999999999999
Q ss_pred cccCCCcCChHHHHHHHHHHHccEEEE--------cCCCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhCCC
Q 013878 364 MICRPFFGDHRMNARLVEEVWGIGVKV--------EGIVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 364 ~v~~P~~~DQ~~na~~v~~~~G~G~~l--------~~~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~~a~~~g 433 (434)
||+||+++||+.||+++++.||+|+.+ +.+.+++++|+++|+++|.++ |++||+||+++++++++|+++|
T Consensus 386 ~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 386 MVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred eeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999877888776 335689999999999999986 7799999999999999999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.6e-40 Score=333.29 Aligned_cols=353 Identities=17% Similarity=0.165 Sum_probs=229.8
Q ss_pred eEEEE-cCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCC--C-CCCC----
Q 013878 42 HVAVL-AFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPM--K-NAST---- 113 (434)
Q Consensus 42 ~Ill~-~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~--~-~~~~---- 113 (434)
+|+.+ |.++.+|..-+-.|+++|++| ||+||+++.... ...... ...+++...++...+. . ....
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~r--GH~VTvi~p~~~-~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAER--GHNVTVIKPTLR-VYYASH----LCGNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHc--CCeEEEEecccc-cccccC----CCCCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 58766 889999999999999999999 999999976531 111110 0125666555311000 0 0000
Q ss_pred --c--cchHHH----HHHHHHhcchhH-HHHHHHHHhccCCCccEEEECCCchhHHHHHHHc-CCCeEeEcCchhhHHHH
Q 013878 114 --E--SNRLEA----VELLQKATPENF-KKGLNAAVFETGRKISCMLTDAFLTFSGEMARDM-HIPWLPVFVAMPYNVSA 183 (434)
Q Consensus 114 --~--~~~~~~----~~~~~~~~~~~~-~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~l-gIP~v~~~~~~~~~~~~ 183 (434)
. ...... ...+...+...+ .+.+.++++..+.++|+||+|.+..++..+|+.+ ++|.+.+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 0 000000 111111121112 2223444431124799999999988888899999 99988777644332211
Q ss_pred hhhhhhhhhhhcCCCCCccCCCCcccccCCCCCcccc------cccchhccC------CCcchHHHHHHHHhh-------
Q 013878 184 HIHTGLIHQFFINSSGSLRLEDQTLDIIPGLSMMRIS------DLSDEILWG------DSRESLFSSMLSKLG------- 244 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pglp~~~~~------~l~~~~~~~------~~~~~~~~~~~~~~~------- 244 (434)
... . ....+..|+|....-..+ ++.+.+... +.......+..++..
T Consensus 175 ~~~----g-----------g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 175 ETM----G-----------AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred Hhh----c-----------cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 000 0 011112223332211111 111111000 000011111222221
Q ss_pred -ccCCCCcEEEEcchhhhccchhhhhhhhccCCcEeeeccccCCCCC-CCCCcchhhhhhhhcCCCCCcc--e-------
Q 013878 245 -GVLPQGSTAVINFYQELYCSSQLTNDLNSKVPSLLSVGFLTQPLSP-PPLPPSIQMKLPAMVGQTKGKI--C------- 313 (434)
Q Consensus 245 -~~~~~~~~vl~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~-~~~~~~~~~~~~~L~~~~~~~v--S------- 313 (434)
+...+.+++++|+.+.++ .+ |+..|++++|||++..... ...++ ++.+|+++++.+.| |
T Consensus 240 ~~l~~~~~l~lvns~~~~d--~~-----rp~~p~v~~vGgi~~~~~~~~~l~~---~l~~fl~~~~~g~V~vS~GS~~~~ 309 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFD--NN-----RPVPPSVQYLGGLHLHKKPPQPLDD---YLEEFLNNSTNGVVYVSFGSSIDT 309 (507)
T ss_pred HHHHhCCcEEEEecCcccc--CC-----CCCCCCeeeecccccCCCCCCCCCH---HHHHHHhcCCCcEEEEECCCCCcC
Confidence 122356799999999998 66 8899999999999875322 23333 48899998766555 2
Q ss_pred -eee-----------------ecc---------ccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCccccc
Q 013878 314 -CVS-----------------LAL---------RTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMIC 366 (434)
Q Consensus 314 -~la-----------------~~~---------~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~ 366 (434)
.++ ++| ..++|+++.+|+||.+||+|++|++||||||+||+.||+++|||+|+
T Consensus 310 ~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~ 389 (507)
T PHA03392 310 NDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVG 389 (507)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEE
Confidence 111 111 34689999999999999999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 013878 367 RPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEA 429 (434)
Q Consensus 367 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a 429 (434)
+|+++||+.||+|+++. |+|+.++..+++.++|++||+++|+| ++||+||+++++.+++.
T Consensus 390 iP~~~DQ~~Na~rv~~~-G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 390 LPMMGDQFYNTNKYVEL-GIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ 449 (507)
T ss_pred CCCCccHHHHHHHHHHc-CcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence 99999999999999998 99999999899999999999999999 99999999999999874
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.7e-41 Score=345.09 Aligned_cols=347 Identities=22% Similarity=0.273 Sum_probs=189.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCC-ccc-hHH
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNAST-ESN-RLE 119 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~-~~~-~~~ 119 (434)
+|+++|. +.+|+.++..|+++|++| ||+||++++.. ...+... ...++++..++.+.+...... ... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r--GH~VTvl~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER--GHNVTVLTPSP-SSSLNPS----KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH---TTSEEEHHHH-HHT----------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc--CCceEEEEeec-ccccccc----cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888885 779999999999999999 99999998753 2222211 122666766665443221110 010 000
Q ss_pred HHH---------HHHHh---cchhHHHHHHHHHhcc-------CCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhH
Q 013878 120 AVE---------LLQKA---TPENFKKGLNAAVFET-------GRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYN 180 (434)
Q Consensus 120 ~~~---------~~~~~---~~~~~~~~l~~l~~~~-------~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~ 180 (434)
.+. ..... ........-++++.+. ..++|++|+|.+..++..+|+.+|||.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 000 00000 0000000000011000 1268999999998889999999999998765332211
Q ss_pred HHHhhhhhhhhhhhcCCCCCccCCCCcccccCCCCCcccccccchhccC-C--Cc-chHHHHHHHH-hhcc---------
Q 013878 181 VSAHIHTGLIHQFFINSSGSLRLEDQTLDIIPGLSMMRISDLSDEILWG-D--SR-ESLFSSMLSK-LGGV--------- 246 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~-~--~~-~~~~~~~~~~-~~~~--------- 246 (434)
..... . . ....+..|.|... ..++..+... | .. .........+ ....
T Consensus 154 ~~~~~-----~-~---------g~p~~psyvP~~~----s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (500)
T PF00201_consen 154 DLSSF-----S-G---------GVPSPPSYVPSMF----SDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYF 214 (500)
T ss_dssp CCTCC-----T-S---------CCCTSTTSTTCBC----CCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEES
T ss_pred hhhhh-----c-c---------CCCCChHHhcccc----ccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhc
Confidence 00000 0 0 0001111122111 1111111000 0 00 0000011111 1100
Q ss_pred ---------CCCCcEEEEcchhhhccchhhhhhhhccCCcEeeeccccCCCCCCCCCcchhhhhhhhcC-CCCCcc--e-
Q 013878 247 ---------LPQGSTAVINFYQELYCSSQLTNDLNSKVPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVG-QTKGKI--C- 313 (434)
Q Consensus 247 ---------~~~~~~vl~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~-~~~~~v--S- 313 (434)
..+.+.+++|+.+.++ .+ |+..|++++||+++..... ..+. ++..|+++ .+.++| |
T Consensus 215 ~~~~~~~~~~~~~~l~l~ns~~~ld--~p-----rp~~p~v~~vGgl~~~~~~-~l~~---~~~~~~~~~~~~~vv~vsf 283 (500)
T PF00201_consen 215 GFPFSFRELLSNASLVLINSHPSLD--FP-----RPLLPNVVEVGGLHIKPAK-PLPE---ELWNFLDSSGKKGVVYVSF 283 (500)
T ss_dssp S-GGGCHHHHHHHHHCCSSTEEE-----------HHHHCTSTTGCGC-S-----TCHH---HHHHHTSTTTTTEEEEEE-
T ss_pred ccccccHHHHHHHHHHhhhccccCc--CC-----cchhhcccccCcccccccc-cccc---ccchhhhccCCCCEEEEec
Confidence 0123345667766666 44 8888999999999875432 2333 48889988 556655 3
Q ss_pred -----eee-----------------eccc--------cCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcc
Q 013878 314 -----CVS-----------------LALR--------TSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVL 363 (434)
Q Consensus 314 -----~la-----------------~~~~--------~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP 363 (434)
.++ ++|+ +++|+++.+|+||.+||+||+|++||||||+||+.||+++|||
T Consensus 284 Gs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP 363 (500)
T PF00201_consen 284 GSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVP 363 (500)
T ss_dssp TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--
T ss_pred CcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCC
Confidence 111 3333 4688989999999999999999999999999999999999999
Q ss_pred cccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 013878 364 MICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEA 429 (434)
Q Consensus 364 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a 429 (434)
||++|+++||+.||+++++. |+|+.++.++++.++|.+||+++|+| ++|++||+++++++++.
T Consensus 364 ~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 364 MLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT--
T ss_pred ccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999 99999999999988763
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.5e-37 Score=308.95 Aligned_cols=337 Identities=16% Similarity=0.126 Sum_probs=208.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCc------
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTE------ 114 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~------ 114 (434)
|||+|+++|+.||++|+++||++|++| ||+|+|++++.+...+++. |++|+++++..+.......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r--Gh~V~~~t~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA--GHEVRVATPPEFADLVEAA-------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC--CCeEEEeeCHhHHHHHHHc-------CCceeeCCCCHHHHHhhhhhccccc
Confidence 589999999999999999999999999 9999999999877666665 8999998764321110000
Q ss_pred cchHHHHHHHHHhcchhHHHHHHHHHhcc-CCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhh
Q 013878 115 SNRLEAVELLQKATPENFKKGLNAAVFET-GRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQF 193 (434)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
.............+.....+.++++.+.+ ..+|||||+|.+++++..+|+++|||++.+++.+........+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~------- 144 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP------- 144 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC-------
Confidence 00111111122222233344444444433 2689999999999999999999999999998765332111000
Q ss_pred hcCCCCCccCCCCcccccCCCCCcccccccchhc---cCCCcchHHHHHHHHhhccCC-----CCcEEEEcchhhhccch
Q 013878 194 FINSSGSLRLEDQTLDIIPGLSMMRISDLSDEIL---WGDSRESLFSSMLSKLGGVLP-----QGSTAVINFYQELYCSS 265 (434)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~pglp~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~~s~~~le~~~ 265 (434)
|. ... ......... ..............+..-... ..+..+....+.+.
T Consensus 145 ------------------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~--- 201 (401)
T cd03784 145 ------------------PL-GRA-NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVL--- 201 (401)
T ss_pred ------------------cc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccC---
Confidence 00 000 000000000 000000111111111110000 01111221111111
Q ss_pred hhhhhhhccCC-cEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCcc----ee---------------ee-----ec--
Q 013878 266 QLTNDLNSKVP-SLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGKI----CC---------------VS-----LA-- 318 (434)
Q Consensus 266 ~~~~~~~~~~~-~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~v----S~---------------la-----~~-- 318 (434)
..++.++ +..++|..+...+.+.. .+ .++..|+++..+.++ |. +. +.
T Consensus 202 ----~~~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~ 275 (401)
T cd03784 202 ----PPPPDWPRFDLVTGYGFRDVPYNGP-PP-PELWLFLAAGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILS 275 (401)
T ss_pred ----CCCCCccccCcEeCCCCCCCCCCCC-CC-HHHHHHHhCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEE
Confidence 1233443 56777633322222211 11 346778876544332 20 00 00
Q ss_pred --------cccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEE
Q 013878 319 --------LRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKV 390 (434)
Q Consensus 319 --------~~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 390 (434)
...++|+++.+|+||.++|+|++ +||||||+||++||+++|||+|++|+..||+.||+++++. |+|+.+
T Consensus 276 ~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l 352 (401)
T cd03784 276 LGWGGLGAEDLPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPAL 352 (401)
T ss_pred ccCccccccCCCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCC
Confidence 12357888899999999999977 9999999999999999999999999999999999999998 999999
Q ss_pred cCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 013878 391 EGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIE 428 (434)
Q Consensus 391 ~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~ 428 (434)
+...+++++|+++|++++++ + ++++++++++.+++
T Consensus 353 ~~~~~~~~~l~~al~~~l~~--~-~~~~~~~~~~~~~~ 387 (401)
T cd03784 353 DPRELTAERLAAALRRLLDP--P-SRRRAAALLRRIRE 387 (401)
T ss_pred CcccCCHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHh
Confidence 87779999999999999986 4 55666666666644
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.9e-36 Score=296.99 Aligned_cols=328 Identities=16% Similarity=0.187 Sum_probs=208.4
Q ss_pred EcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCC---CccchHHHHH
Q 013878 46 LAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNAS---TESNRLEAVE 122 (434)
Q Consensus 46 ~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~---~~~~~~~~~~ 122 (434)
+.+|+.||++|++.||++|+++ ||+|+|++++.+.+.+++. |++|+++++........ ..........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR--GHRVTYATTEEFAERVEAA-------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhC--CCeEEEEeCHHHHHHHHHc-------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 3679999999999999999999 9999999999888777776 89999988654321000 0012222233
Q ss_pred HHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhhhhhhhhhcCCCCCcc
Q 013878 123 LLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHTGLIHQFFINSSGSLR 202 (434)
Q Consensus 123 ~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (434)
.+...+...+.. +.+++++ .+|||||+|.+++|+..+|+++|||++.+++....... +...
T Consensus 72 ~~~~~~~~~~~~-l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~~--------------- 132 (392)
T TIGR01426 72 KLLDEAEDVLPQ-LEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FEEM--------------- 132 (392)
T ss_pred HHHHHHHHHHHH-HHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-cccc---------------
Confidence 232222222222 2222222 48999999999999999999999999988643211100 0000
Q ss_pred CCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhcc--------CCCCcEEEEcchhhhccchhhhhhhhcc
Q 013878 203 LEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGV--------LPQGSTAVINFYQELYCSSQLTNDLNSK 274 (434)
Q Consensus 203 ~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~vl~~s~~~le~~~~~~~~~~~~ 274 (434)
..+. .+++ +......... .. .....++....+..-. ....+..+..+...|+ ++ ++.
T Consensus 133 --~~~~--~~~~--~~~~~~~~~~-~~-~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~--~~-----~~~ 197 (392)
T TIGR01426 133 --VSPA--GEGS--AEEGAIAERG-LA-EYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQ--PA-----GET 197 (392)
T ss_pred --cccc--chhh--hhhhccccch-hH-HHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhC--CC-----ccc
Confidence 0000 0000 0000000000 00 0011122222111100 0112223444444444 32 444
Q ss_pred C-CcEeeeccccCCCCCCCCCcchhhhhhhhcC-CCCCcc--e--------------------------------eee--
Q 013878 275 V-PSLLSVGFLTQPLSPPPLPPSIQMKLPAMVG-QTKGKI--C--------------------------------CVS-- 316 (434)
Q Consensus 275 ~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~-~~~~~v--S--------------------------------~la-- 316 (434)
+ ++++++||+........ .|... ...+.| | ...
T Consensus 198 ~~~~~~~~Gp~~~~~~~~~---------~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~ 268 (392)
T TIGR01426 198 FDDSFTFVGPCIGDRKEDG---------SWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA 268 (392)
T ss_pred cCCCeEEECCCCCCccccC---------CCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh
Confidence 4 48999999875432110 12221 111111 1 000
Q ss_pred eccccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 317 LALRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 317 ~~~~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
.....++|+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|...||+.||+++++. |+|+.+....++
T Consensus 269 ~~~~~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~~~ 345 (392)
T TIGR01426 269 DLGELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEEVT 345 (392)
T ss_pred HhccCCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEeccccCC
Confidence 1123467888889999999999988 9999999999999999999999999999999999999998 999999888899
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Q 013878 397 KSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAA 430 (434)
Q Consensus 397 ~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~ 430 (434)
+++|+++|+++|+| ++|+++++++++.+++..
T Consensus 346 ~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~~ 377 (392)
T TIGR01426 346 AEKLREAVLAVLSD--PRYAERLRKMRAEIREAG 377 (392)
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHcC
Confidence 99999999999999 999999999999988654
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.5e-35 Score=302.52 Aligned_cols=367 Identities=23% Similarity=0.290 Sum_probs=215.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCC-----CCCeEEEEcCCCCCCCCCCCc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRL-----PDNIKVYDIEDGVPMKNASTE 114 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~-----~~gi~f~~l~~~~~~~~~~~~ 114 (434)
+.|++++++|++||++|++.||+.|+++ ||+||++++............... .....+....++++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~--gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER--GHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc--CCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 4599999999999999999999999999 999999998864333222110000 001111111222322211100
Q ss_pred cchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcC-CCeEeEcCchhhHHHHhhhhhhhhhh
Q 013878 115 SNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMH-IPWLPVFVAMPYNVSAHIHTGLIHQF 193 (434)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lg-IP~v~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
.........+...+...+.+....+......++||+|+|.+..|...+|...+ |+...+.+.++.......+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~--- 159 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS--- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc---
Confidence 01111123334444445555555544433334999999999888888887775 99988888777665543332111
Q ss_pred hcCCCCCccCCCCcccccCCCC-CcccccccchhccCCCcchHHHHHHHHhhc-----------cCCCCcEEEEcchhhh
Q 013878 194 FINSSGSLRLEDQTLDIIPGLS-MMRISDLSDEILWGDSRESLFSSMLSKLGG-----------VLPQGSTAVINFYQEL 261 (434)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~pglp-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~vl~~s~~~l 261 (434)
..+...+.... .... +++.. .+....++...... ............... ...+++..++|+...+
T Consensus 160 ~~p~~~~~~~~-~~~~-~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 160 YVPSPFSLSSG-DDMS-FPERVPNLIKKDLPSFLFSL-SDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred ccCcccCcccc-ccCc-HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 00000000000 0011 11110 01111111111100 000000111111111 1122334444444333
Q ss_pred ccchhhhhhhhccCCcEeeeccccCCCCCCCCCcchhhhhhhhcCCCC---Ccc--e--------eee------------
Q 013878 262 YCSSQLTNDLNSKVPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTK---GKI--C--------CVS------------ 316 (434)
Q Consensus 262 e~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~---~~v--S--------~la------------ 316 (434)
+ .. .++..+++++|||+.........+ .+.+|++..+. ++| | .++
T Consensus 237 ~--~~----~~~~~~~v~~IG~l~~~~~~~~~~----~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~ 306 (496)
T KOG1192|consen 237 D--FE----PRPLLPKVIPIGPLHVKDSKQKSP----LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALE 306 (496)
T ss_pred C--CC----CCCCCCCceEECcEEecCcccccc----ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHH
Confidence 3 10 244568999999999873332211 36778877544 344 3 111
Q ss_pred ------eccc------------cCC----CceeeccCCHHhH-hccCCcceEEecCCchhHHHHHHcCcccccCCCcCCh
Q 013878 317 ------LALR------------TSG----RGKIVLQAPQTQV-LGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDH 373 (434)
Q Consensus 317 ------~~~~------------~~~----~~~v~~w~pq~~l-L~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 373 (434)
|+|+ .++ |+...+|+||.++ |+|++|++||||||||||+|++++|||+|++|+++||
T Consensus 307 ~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ 386 (496)
T KOG1192|consen 307 SLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQ 386 (496)
T ss_pred hCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccc
Confidence 3332 222 3444589999999 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 013878 374 RMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVI 427 (434)
Q Consensus 374 ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~ 427 (434)
+.||+++++. |.|..+...+++.+++.+++++++++ ++|+++|+++++.++
T Consensus 387 ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 387 PLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILR 437 (496)
T ss_pred hhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHH
Confidence 9999999999 55555545555555599999999999 999999999999876
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-33 Score=276.51 Aligned_cols=346 Identities=16% Similarity=0.078 Sum_probs=202.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCC-CCCCCCCCccchH
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDG-VPMKNASTESNRL 118 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~-~~~~~~~~~~~~~ 118 (434)
+|||+++..|+.||++|+++||++|+++ ||+|+|++++.+.+.+++. |+.|...+.. .............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~--gheV~~~~~~~~~~~ve~a-------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR--GHEVVFASTGKFKEFVEAA-------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc--CCeEEEEeCHHHHHHHHHh-------CcceeeccccCChhhhhhhhhhcc
Confidence 3589999999999999999999999999 9999999999999999888 7777777632 1111110000111
Q ss_pred HHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhHHHHhhhh-hhhhhhhcCC
Q 013878 119 EAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYNVSAHIHT-GLIHQFFINS 197 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (434)
+.+......+.....+.++-+.+ ..+|.|+.|.-...+ .+++..++|++................ ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVG------ 141 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccc------
Confidence 11110111122222333333322 268988888665444 888999999887654322221111100 0000
Q ss_pred CCCccCCCCcccccCCCCCcccccccchhccCCCcchHHHHHHHHhhccCCC---CcEEEEcchhhhccchhhhhh---h
Q 013878 198 SGSLRLEDQTLDIIPGLSMMRISDLSDEILWGDSRESLFSSMLSKLGGVLPQ---GSTAVINFYQELYCSSQLTND---L 271 (434)
Q Consensus 198 ~~~~~~~~~~~~~~pglp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vl~~s~~~le~~~~~~~~---~ 271 (434)
..+... .+..+ +......+..... .. ......+....... .-.-+..+...++ ..+.+. .
T Consensus 142 ------~~~~~~-~~~~~-~~~~~~~~~~~~~---~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 207 (406)
T COG1819 142 ------IAGKLP-IPLYP-LPPRLVRPLIFAR---SW-LPKLVVRRNLGLELGLPNIRRLFASGPLLE--IAYTDVLFPP 207 (406)
T ss_pred ------cccccc-ccccc-cChhhccccccch---hh-hhhhhhhhhccccccccchHHHhcCCCCcc--ccccccccCC
Confidence 000000 00000 0000000000000 00 00000000000000 0000001111111 111110 0
Q ss_pred -hccCCcEeeeccccCCCCCCCCCcchhhhhhhhcCCCCCc----------------------------c-eeee---ec
Q 013878 272 -NSKVPSLLSVGFLTQPLSPPPLPPSIQMKLPAMVGQTKGK----------------------------I-CCVS---LA 318 (434)
Q Consensus 272 -~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~L~~~~~~~----------------------------v-S~la---~~ 318 (434)
++.+-...++||+....... ...|.....+.. | +.-. ..
T Consensus 208 ~~~~p~~~~~~~~~~~~~~~~--------~~~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~~ 279 (406)
T COG1819 208 GDRLPFIGPYIGPLLGEAANE--------LPYWIPADRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDTL 279 (406)
T ss_pred CCCCCCCcCcccccccccccc--------CcchhcCCCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEecccccccc
Confidence 11122466667665443221 112222211111 1 1000 13
Q ss_pred cccCCCceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 319 LRTSGRGKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 319 ~~~~~~~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
...++|+++.+|+||.++|++++ +||||||+|||.|||++|||+|++|...||++||.|+++. |+|+.++.+.++++
T Consensus 280 ~~~p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~~l~~~ 356 (406)
T COG1819 280 VNVPDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFEELTEE 356 (406)
T ss_pred ccCCCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCcccCCHH
Confidence 45678999999999999999999 9999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhC
Q 013878 399 GVLQSLELMFSHEGKKMRENVRHLKEIVIEAAG 431 (434)
Q Consensus 399 ~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~ 431 (434)
.|+++|+++|+| ++|+++++++++.+++..+
T Consensus 357 ~l~~av~~vL~~--~~~~~~~~~~~~~~~~~~g 387 (406)
T COG1819 357 RLRAAVNEVLAD--DSYRRAAERLAEEFKEEDG 387 (406)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHhhhccc
Confidence 999999999999 9999999999999988765
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.85 E-value=5.2e-20 Score=177.23 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=75.6
Q ss_pred CCCceeeccC--CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCC--cCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 322 SGRGKIVLQA--PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF--FGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 322 ~~~~~v~~w~--pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
.+|+.+.++. ...++++.++ ++|||||+||++|++++|+|+|++|. ..||..||+++++. |+|+.++.+++++
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~~~~~ 307 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQEDLTP 307 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcccccCCH
Confidence 6777777765 5678898888 99999999999999999999999999 78999999999998 9999999899999
Q ss_pred HHHHHHHHHH
Q 013878 398 SGVLQSLELM 407 (434)
Q Consensus 398 ~~l~~av~~l 407 (434)
++|+++|+++
T Consensus 308 ~~l~~~l~~~ 317 (318)
T PF13528_consen 308 ERLAEFLERL 317 (318)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.81 E-value=9.8e-18 Score=162.82 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=79.4
Q ss_pred eeeccC-C-HHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCc-----CChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 326 KIVLQA-P-QTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFF-----GDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 326 ~v~~w~-p-q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
.+.+|+ + -.+++++++ ++|||||.+|+.|++++|+|+|++|+. .||..||.++++. |+|..+..++++++
T Consensus 237 ~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~~~~~~~ 313 (352)
T PRK12446 237 RQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLYEEDVTVN 313 (352)
T ss_pred EEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcchhcCCHH
Confidence 344666 3 457898999 999999999999999999999999984 4899999999998 99999988889999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH
Q 013878 399 GVLQSLELMFSHEGKKMRENVRHL 422 (434)
Q Consensus 399 ~l~~av~~ll~~~~~~~r~~a~~l 422 (434)
.|.++++++++|. +.++++++++
T Consensus 314 ~l~~~l~~ll~~~-~~~~~~~~~~ 336 (352)
T PRK12446 314 SLIKHVEELSHNN-EKYKTALKKY 336 (352)
T ss_pred HHHHHHHHHHcCH-HHHHHHHHHc
Confidence 9999999999871 3566666554
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.78 E-value=3.1e-17 Score=157.95 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred ccCCCceeeccCC--HHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcC--ChHHHHHHHHHHHccEEEEcCCCc
Q 013878 320 RTSGRGKIVLQAP--QTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFG--DHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 320 ~~~~~~~v~~w~p--q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
..++|+.+.+|.| ..+.|..++ +||||||++|+.|++++|+|++++|..+ ||..||+.+++. |+|+.++..++
T Consensus 226 ~~~~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~~ 302 (321)
T TIGR00661 226 SYNENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKEL 302 (321)
T ss_pred ccCCCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhhH
Confidence 3467888889997 345566666 9999999999999999999999999855 899999999999 99999976655
Q ss_pred CHHHHHHHHHHHhccCcHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKM 415 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~ 415 (434)
++.+++.+++++ +.|
T Consensus 303 ---~~~~~~~~~~~~--~~~ 317 (321)
T TIGR00661 303 ---RLLEAILDIRNM--KRY 317 (321)
T ss_pred ---HHHHHHHhcccc--ccc
Confidence 555566667766 444
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.4e-14 Score=139.45 Aligned_cols=95 Identities=24% Similarity=0.368 Sum_probs=80.7
Q ss_pred ceeeccCCH-HhHhccCCcceEEecCCchhHHHHHHcCcccccCCC-c---CChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 325 GKIVLQAPQ-TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF-F---GDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 325 ~~v~~w~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~-~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
..+.++.++ .++++-++ ++||+.|.+|+.|.+++|+|+|.+|. . .||..||..+++. |.|..++..+++.++
T Consensus 237 ~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~~lt~~~ 313 (357)
T COG0707 237 VRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQSELTPEK 313 (357)
T ss_pred EEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccccCCHHH
Confidence 445577654 57777788 99999999999999999999999996 2 4899999999999 999999999999999
Q ss_pred HHHHHHHHhcc-C-cHHHHHHHHHH
Q 013878 400 VLQSLELMFSH-E-GKKMRENVRHL 422 (434)
Q Consensus 400 l~~av~~ll~~-~-~~~~r~~a~~l 422 (434)
|.+.|.+++.+ | -.+|+++++.+
T Consensus 314 l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 314 LAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999987 2 35566666655
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.56 E-value=2.5e-12 Score=125.85 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=79.3
Q ss_pred ceeeccC-CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCC----cCChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 325 GKIVLQA-PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF----FGDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 325 ~~v~~w~-pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
+.+.+|+ +..+++..++ ++|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|+.++.+.+++++
T Consensus 237 v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~~~~~~ 313 (357)
T PRK00726 237 AEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSDLTPEK 313 (357)
T ss_pred EEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcccCCHHH
Confidence 5566888 4568898888 99999999999999999999999996 47899999999998 999999887788999
Q ss_pred HHHHHHHHhccCcHHHHHHHHH
Q 013878 400 VLQSLELMFSHEGKKMRENVRH 421 (434)
Q Consensus 400 l~~av~~ll~~~~~~~r~~a~~ 421 (434)
|+++++++++| ++++++..+
T Consensus 314 l~~~i~~ll~~--~~~~~~~~~ 333 (357)
T PRK00726 314 LAEKLLELLSD--PERLEAMAE 333 (357)
T ss_pred HHHHHHHHHcC--HHHHHHHHH
Confidence 99999999999 555544433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.50 E-value=1.3e-11 Score=120.29 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=76.9
Q ss_pred CCceeeccC-CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCC----cCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQA-PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF----FGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~-pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+|+.+.+|+ ...++|+.++ ++|+++|.+++.||+++|+|+|+.|. ..+|..|+..+.+. |.|..++.++.+.
T Consensus 235 ~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~~~ 311 (350)
T cd03785 235 VNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEELTP 311 (350)
T ss_pred CCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCCCH
Confidence 567777887 5567888888 89999999999999999999999985 46799999999998 9999997666789
Q ss_pred HHHHHHHHHHhccCcHHHHH
Q 013878 398 SGVLQSLELMFSHEGKKMRE 417 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~ 417 (434)
++|.++++++++| ++.++
T Consensus 312 ~~l~~~i~~ll~~--~~~~~ 329 (350)
T cd03785 312 ERLAAALLELLSD--PERLK 329 (350)
T ss_pred HHHHHHHHHHhcC--HHHHH
Confidence 9999999999998 54433
No 34
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.46 E-value=8.6e-14 Score=117.02 Aligned_cols=126 Identities=10% Similarity=0.063 Sum_probs=82.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHH
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVE 122 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~ 122 (434)
|+|++.|+.||++|+++||++|++| ||+|++++.+.+.+.+++. |++|++++.+. ..... ........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r--Gh~V~~~~~~~~~~~v~~~-------Gl~~~~~~~~~--~~~~~-~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR--GHEVRLATPPDFRERVEAA-------GLEFVPIPGDS--RLPRS-LEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEETGGGHHHHHHT-------T-EEEESSSCG--GGGHH-HHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc--CCeEEEeecccceeccccc-------CceEEEecCCc--CcCcc-cchhhhhh
Confidence 7899999999999999999999999 9999999999888778766 99999997540 00000 01111111
Q ss_pred HHHHh--cchhHHHHHHHHHhc-----cC-CCccEEEECCCchhHHHHHHHcCCCeEeEcCchhhH
Q 013878 123 LLQKA--TPENFKKGLNAAVFE-----TG-RKISCMLTDAFLTFSGEMARDMHIPWLPVFVAMPYN 180 (434)
Q Consensus 123 ~~~~~--~~~~~~~~l~~l~~~-----~~-~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~~~~ 180 (434)
.+.+. ......+.+++...+ .+ ..+|+++.+.....+..+||++|||++.....+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 11111 011122222222211 11 357888889888889999999999999998766543
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.41 E-value=1.5e-10 Score=112.74 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=70.3
Q ss_pred CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCc---CChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFF---GDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
+..++++.++ +||+++|.+++.||+++|+|+|+.|.. .+|..|+..+.+. |.|..++.+..+.++|++++++++
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEecccCCHHHHHHHHHHHH
Confidence 5567888888 999999988899999999999999863 5788899999998 999988777778999999999999
Q ss_pred ccCcHHHHHH
Q 013878 409 SHEGKKMREN 418 (434)
Q Consensus 409 ~~~~~~~r~~ 418 (434)
+| ++.+++
T Consensus 320 ~~--~~~~~~ 327 (348)
T TIGR01133 320 LD--PANLEA 327 (348)
T ss_pred cC--HHHHHH
Confidence 98 655443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.39 E-value=3.1e-11 Score=111.50 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=66.3
Q ss_pred HhHhccCCcceEEecCCchhHHHHHHcCcccccCCCc---CChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhc
Q 013878 334 TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFF---GDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFS 409 (434)
Q Consensus 334 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~ 409 (434)
..++.-++ .+|+-||+||++|-|++|+|.+++|.. .+|..-|.|+++. |+--.+..++++++.++++++..++
T Consensus 289 ~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 289 ESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhc-CcceeeCcccCChHHHHHHHHhccc
Confidence 45555566 999999999999999999999999984 4899999999998 9999998999999999999999888
No 37
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.29 E-value=1.5e-12 Score=113.06 Aligned_cols=85 Identities=19% Similarity=0.321 Sum_probs=74.1
Q ss_pred CCceeeccCC-HHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcC----ChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAP-QTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFG----DHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~p-q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
.|+.+.+|.+ ..+++..++ ++|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.....+.
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~ 131 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNP 131 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SC
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCH
Confidence 5677889999 789999999 9999999999999999999999999988 999999999999 9999998888889
Q ss_pred HHHHHHHHHHhcc
Q 013878 398 SGVLQSLELMFSH 410 (434)
Q Consensus 398 ~~l~~av~~ll~~ 410 (434)
++|.++|++++.+
T Consensus 132 ~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 132 EELAEAIEELLSD 144 (167)
T ss_dssp CCHHHHHHCHCCC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999998
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.23 E-value=7.2e-10 Score=109.34 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=74.3
Q ss_pred CHHhHhccCCcceEEecCCchhHHHHHHcCcccccC----CCcC---------ChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICR----PFFG---------DHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
...++++.++ +||+-.|..|+ |++++|+|+|++ |+.+ +|..|+..+.+. ++..++..++.+++
T Consensus 260 ~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~~~~~~ 335 (385)
T TIGR00215 260 DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQEECTPH 335 (385)
T ss_pred hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCCCCCHH
Confidence 3456788888 99999999887 999999999999 8632 277799999998 99999887889999
Q ss_pred HHHHHHHHHhccCcH----HHHHHHHHHHHHHHHHh
Q 013878 399 GVLQSLELMFSHEGK----KMRENVRHLKEIVIEAA 430 (434)
Q Consensus 399 ~l~~av~~ll~~~~~----~~r~~a~~l~~~~~~a~ 430 (434)
+|.+++.++|.| + +++++.++--+.+++-.
T Consensus 336 ~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 336 PLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHh
Confidence 999999999998 7 55555554444444433
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.20 E-value=3.1e-09 Score=104.91 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCCceeeccCCH-HhHhccCCcceEEecCCchhHHHHHHcCcccccC-CCcCChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 322 SGRGKIVLQAPQ-TQVLGHFSIGVFVTHCGANSVCESIANGVLMICR-PFFGDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 322 ~~~~~v~~w~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
++|+.+.+|+++ .+++..++ +||+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+... +.++
T Consensus 255 ~~~v~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~----~~~~ 327 (380)
T PRK13609 255 PDALKVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR----DDEE 327 (380)
T ss_pred CCcEEEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC----CHHH
Confidence 357777899887 47898888 899999988899999999999984 6677788999999888 9998652 6799
Q ss_pred HHHHHHHHhcc
Q 013878 400 VLQSLELMFSH 410 (434)
Q Consensus 400 l~~av~~ll~~ 410 (434)
|+++|+++++|
T Consensus 328 l~~~i~~ll~~ 338 (380)
T PRK13609 328 VFAKTEALLQD 338 (380)
T ss_pred HHHHHHHHHCC
Confidence 99999999998
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.00 E-value=2.9e-08 Score=93.47 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCceeeccCCHH-hHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHH
Q 013878 323 GRGKIVLQAPQT-QVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARL 379 (434)
Q Consensus 323 ~~~~v~~w~pq~-~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 379 (434)
.|+.+..++++. +++..++ ++||+|| +|++|++++|+|+|++|...+|..||+.
T Consensus 224 ~~i~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 224 PNIILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCEEEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 467777999874 8899999 9999999 9999999999999999999999999975
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.91 E-value=3.8e-08 Score=97.15 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=54.4
Q ss_pred HHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChH-HHH------------HHHHHHHccEEEEcCCCcCHHH
Q 013878 333 QTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHR-MNA------------RLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 333 q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na------------~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
-.++++.++ ++|+-+|.+++ |++++|+|+|+.|-...-+ ..+ ..+.+. +++..+..+..++++
T Consensus 255 ~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 255 KREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEK 330 (380)
T ss_pred HHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHH
Confidence 356777788 99999998777 9999999999986432222 111 222222 333344445678999
Q ss_pred HHHHHHHHhccCcHHHHH
Q 013878 400 VLQSLELMFSHEGKKMRE 417 (434)
Q Consensus 400 l~~av~~ll~~~~~~~r~ 417 (434)
|++++.++++| ++.++
T Consensus 331 l~~~i~~ll~~--~~~~~ 346 (380)
T PRK00025 331 LARALLPLLAD--GARRQ 346 (380)
T ss_pred HHHHHHHHhcC--HHHHH
Confidence 99999999999 54443
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.72 E-value=5.4e-06 Score=80.36 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=64.6
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEecCC----chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVTHCG----ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+|+.+.+|+++.+ ++..++ ++|+.+. -++++||+++|+|+|+.+..+ +...+.+. +.|...+..
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~~ 317 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEPG 317 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCCC
Confidence 456777889999776 577777 7776654 378999999999999988654 44556665 888877543
Q ss_pred CcCHHHHHHHHHHHhccCcHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHEGKKMRE 417 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~~~~~r~ 417 (434)
+.+++++++++++.| ++.++
T Consensus 318 --~~~~l~~~i~~l~~~--~~~~~ 337 (364)
T cd03814 318 --DAEAFAAALAALLAD--PELRR 337 (364)
T ss_pred --CHHHHHHHHHHHHcC--HHHHH
Confidence 778899999999998 44433
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.56 E-value=2.9e-05 Score=75.00 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCceeeccCCHHhH---hccCCcceEEe----cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 322 SGRGKIVLQAPQTQV---LGHFSIGVFVT----HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 322 ~~~~~v~~w~pq~~l---L~~~~v~~~I~----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
.+++.+.+|+++.++ +..++ ++|+ ..|+ .++.||+++|+|+|+.+.. .+...+.+. +.|..++..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECCC
Confidence 467777799987655 67777 5553 2344 4789999999999987653 345556654 578887654
Q ss_pred CcCHHHHHHHHHHHhcc
Q 013878 394 VLTKSGVLQSLELMFSH 410 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~ 410 (434)
+.++++++++++++|
T Consensus 315 --d~~~l~~~i~~l~~~ 329 (359)
T cd03823 315 --DAEDLAAALERLIDD 329 (359)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 589999999999998
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.55 E-value=3.6e-05 Score=75.99 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCCceeeccCCHHhH---hccCCcceEEec---CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCC
Q 013878 322 SGRGKIVLQAPQTQV---LGHFSIGVFVTH---CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIV 394 (434)
Q Consensus 322 ~~~~~v~~w~pq~~l---L~~~~v~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 394 (434)
.+++.+.+|+|+.++ +..++ ++|+. -| -.++.||+++|+|+|+....+ ....+.+. +.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~~~~~~- 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGLLVDPR- 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeEEeCCC-
Confidence 456777799998765 66777 66643 22 358999999999999877543 44456665 788887654
Q ss_pred cCHHHHHHHHHHHhcc
Q 013878 395 LTKSGVLQSLELMFSH 410 (434)
Q Consensus 395 ~~~~~l~~av~~ll~~ 410 (434)
+.++++++|.+++++
T Consensus 354 -~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 -DPEALAAALRRLLTD 368 (398)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 689999999999988
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.53 E-value=0.0001 Score=74.94 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=61.0
Q ss_pred CCceeeccCCHHh---HhccCCcceEEecC---C-chhHHHHHHcCcccccCCCcCChHHHHHHHHH---HHccEEEEcC
Q 013878 323 GRGKIVLQAPQTQ---VLGHFSIGVFVTHC---G-ANSVCESIANGVLMICRPFFGDHRMNARLVEE---VWGIGVKVEG 392 (434)
Q Consensus 323 ~~~~v~~w~pq~~---lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~~ 392 (434)
.++...+|+++.+ ++..++ +||.-. | -.++.||+++|+|+|+....+ ....+.+ . +.|..++.
T Consensus 312 ~~V~f~G~v~~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~ 384 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP 384 (465)
T ss_pred CCeEEeccCCHHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC
Confidence 4566669998765 566677 666432 2 346889999999999876532 2233444 5 78888865
Q ss_pred CCcCHHHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 393 IVLTKSGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
+ +.++++++|.++++|. ..++.+++++
T Consensus 385 ~--d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 385 G--DVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred C--CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 7899999999999882 2334444443
No 46
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.46 E-value=2.6e-05 Score=77.27 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHH---HccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEV---WGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
.-.++++.++ ++|+-.|..| .|+...|+|+|++|.-..|. |+...++. .|.++.+.. .+.+.|.+++.+++
T Consensus 289 ~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll 362 (396)
T TIGR03492 289 AFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLL 362 (396)
T ss_pred hHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHH
Confidence 4467788888 9999999766 99999999999999766776 98766651 156666643 35599999999999
Q ss_pred ccCcHHHHHHH
Q 013878 409 SHEGKKMRENV 419 (434)
Q Consensus 409 ~~~~~~~r~~a 419 (434)
+| ++.+++.
T Consensus 363 ~d--~~~~~~~ 371 (396)
T TIGR03492 363 AD--PELLERC 371 (396)
T ss_pred cC--HHHHHHH
Confidence 98 6555433
No 47
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.35 E-value=1.4e-06 Score=86.24 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=76.0
Q ss_pred CCceeeccCCH-HhHhccCCcceEEecCCchhHHHHHHcCcccccC-CCcCChHHHHHHHHHHHccEEEEcCCCcCHHHH
Q 013878 323 GRGKIVLQAPQ-TQVLGHFSIGVFVTHCGANSVCESIANGVLMICR-PFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGV 400 (434)
Q Consensus 323 ~~~~v~~w~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l 400 (434)
+++.+.+|+++ .+++..++ +||+-.|..|+.||+++|+|+|+. |.-+.|..|+..+.+. |+|+..+ +.+++
T Consensus 256 ~~v~~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~----~~~~l 328 (391)
T PRK13608 256 ENVLILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD----TPEEA 328 (391)
T ss_pred CCeEEEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC----CHHHH
Confidence 46667799865 36788888 999988888999999999999998 7767788999999998 9998764 78999
Q ss_pred HHHHHHHhccC--cHHHHHHHHHH
Q 013878 401 LQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 401 ~~av~~ll~~~--~~~~r~~a~~l 422 (434)
.++|.++++|+ ..+|++|++++
T Consensus 329 ~~~i~~ll~~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 329 IKIVASLTNGNEQLTNMISTMEQD 352 (391)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999883 34555665554
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.35 E-value=0.00016 Score=70.08 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=66.4
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEec----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVTH----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+++.+.+++|+.+ ++..++ ++|.. +.-.++.||+++|+|+|+... ...+..+.+. +.|..++..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~ 329 (374)
T cd03817 257 LADRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPG 329 (374)
T ss_pred CCCcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCC
Confidence 356777779999865 466777 55543 234689999999999998764 3345566665 778887654
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRHLKEI 425 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~l~~~ 425 (434)
. . ++.+++.+++++. ..++++++++..+.
T Consensus 330 ~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 D--E-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred C--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2 2 9999999999983 23466666666554
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.35 E-value=0.00018 Score=69.91 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCceeeccCCHHh---HhccCCcceEEecCC---------chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEE
Q 013878 322 SGRGKIVLQAPQTQ---VLGHFSIGVFVTHCG---------ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVK 389 (434)
Q Consensus 322 ~~~~~v~~w~pq~~---lL~~~~v~~~I~HgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 389 (434)
.+++.+.+|+++.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+... .+. +.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceE
Confidence 35677779998765 456677 5553222 23479999999999999876654433 233 56777
Q ss_pred EcCCCcCHHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 390 VEGIVLTKSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 390 l~~~~~~~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
++.+ +.++++++|.++++|+ ..++++++++.
T Consensus 347 ~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 379 (394)
T cd03794 347 VPPG--DPEALAAAILELLDDPEERAEMGENGRRY 379 (394)
T ss_pred eCCC--CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 6544 7899999999999883 33344444443
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.26 E-value=0.00082 Score=66.69 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCceeeccCCHHhH---hccCCcceEEec-CCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAPQTQV---LGHFSIGVFVTH-CGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~pq~~l---L~~~~v~~~I~H-gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+++.+.+++|+.++ +..+++-++.+. .|. .++.||+++|+|+|+... ......+.+. ..|..++.+ ++
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~--d~ 353 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFF--DP 353 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCC--CH
Confidence 56667799998764 566774333332 333 478999999999998654 3344455554 567777544 78
Q ss_pred HHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 398 SGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 398 ~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
++++++|.++++|. ..++.+++++.
T Consensus 354 ~~la~~i~~ll~~~~~~~~l~~~ar~~ 380 (396)
T cd03818 354 DALAAAVIELLDDPARRARLRRAARRT 380 (396)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999999982 23344444443
No 51
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.25 E-value=0.00021 Score=71.73 Aligned_cols=83 Identities=16% Similarity=0.198 Sum_probs=60.9
Q ss_pred HhHhccCCcce-EEe----cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 334 TQVLGHFSIGV-FVT----HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 334 ~~lL~~~~v~~-~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
..+++.++ + |+. -+|-.++.||+++|+|+|+-|..+++......+.+. |.++... +.++|++++.+++
T Consensus 314 ~~~y~~aD--i~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~----d~~~La~~l~~ll 386 (425)
T PRK05749 314 GLLYAIAD--IAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE----DAEDLAKAVTYLL 386 (425)
T ss_pred HHHHHhCC--EEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC----CHHHHHHHHHHHh
Confidence 35566677 5 342 133446899999999999999989999888888777 8877753 6799999999999
Q ss_pred ccC--cHHHHHHHHHHH
Q 013878 409 SHE--GKKMRENVRHLK 423 (434)
Q Consensus 409 ~~~--~~~~r~~a~~l~ 423 (434)
+|. ..+|.++|++..
T Consensus 387 ~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 387 TDPDARQAYGEAGVAFL 403 (425)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 982 334555555544
No 52
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.24 E-value=0.00069 Score=73.39 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCceeeccCCHHhH---hccC--CcceEEec---CCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 323 GRGKIVLQAPQTQV---LGHF--SIGVFVTH---CGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 323 ~~~~v~~w~pq~~l---L~~~--~v~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
+++...+++++.++ +..+ ...+||.- =|+ .++.||+++|+|+|+....+ ....+..- ..|+-++..
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP~ 622 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDPH 622 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECCC
Confidence 44445577777654 3222 12367763 344 58889999999999987543 22233333 468777654
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
+.++|+++|.++++|. ..+|.+++++
T Consensus 623 --D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 623 --DQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred --CHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 7899999999999982 3334444443
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=0.00015 Score=65.94 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=69.8
Q ss_pred HHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCc
Q 013878 333 QTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEG 412 (434)
Q Consensus 333 q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~ 412 (434)
-..++..++ +.|+-+|. |+.|++..|+|.+++|+...|--.|...+.. |+-..+... +..+.....+.++++|
T Consensus 221 ma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~-l~~~~~~~~~~~i~~d-- 293 (318)
T COG3980 221 MAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYH-LKDLAKDYEILQIQKD-- 293 (318)
T ss_pred HHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCC-CchHHHHHHHHHhhhC--
Confidence 345777777 88988886 9999999999999999999999999999998 888887655 6777777788899998
Q ss_pred HHHHHHHHHHHH
Q 013878 413 KKMRENVRHLKE 424 (434)
Q Consensus 413 ~~~r~~a~~l~~ 424 (434)
...|++.-.-++
T Consensus 294 ~~~rk~l~~~~~ 305 (318)
T COG3980 294 YARRKNLSFGSK 305 (318)
T ss_pred HHHhhhhhhccc
Confidence 777776554443
No 54
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.17 E-value=5.9e-06 Score=81.65 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=74.4
Q ss_pred CCceeeccCCH-HhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChH-HHHHHHHHHHccEEEEcCCCcCHHHH
Q 013878 323 GRGKIVLQAPQ-TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHR-MNARLVEEVWGIGVKVEGIVLTKSGV 400 (434)
Q Consensus 323 ~~~~v~~w~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~l 400 (434)
.++.+.+|+++ .+++..++ +||+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -++++|
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~----~~~~~l 337 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS----ESPKEI 337 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec----CCHHHH
Confidence 45666788875 47777788 9999999899999999999999998766675 689889888 999865 388999
Q ss_pred HHHHHHHhcc-C--cHHHHHHHHHH
Q 013878 401 LQSLELMFSH-E--GKKMRENVRHL 422 (434)
Q Consensus 401 ~~av~~ll~~-~--~~~~r~~a~~l 422 (434)
+++|++++.| + ..+|++++++.
T Consensus 338 a~~i~~ll~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 338 ARIVAEWFGDKSDELEAMSENALKL 362 (382)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999986 2 34556665554
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.14 E-value=0.0011 Score=66.32 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=63.3
Q ss_pred Cceee-ccCCHHhH---hccCCcceEEe-c-----CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 324 RGKIV-LQAPQTQV---LGHFSIGVFVT-H-----CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 324 ~~~v~-~w~pq~~l---L~~~~v~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
+.... +|+|..++ |+.++ ++|. + -| -+.+.||+++|+|+|+... ......+++. +.|..++
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC-
Confidence 44444 78886655 66777 5552 1 12 3469999999999998654 2344566665 7898873
Q ss_pred CCcCHHHHHHHHHHHhcc---C--cHHHHHHHHHHH
Q 013878 393 IVLTKSGVLQSLELMFSH---E--GKKMRENVRHLK 423 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~---~--~~~~r~~a~~l~ 423 (434)
+.++|+++|.++++| . ..+|++++++.+
T Consensus 367 ---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999998 3 667777877755
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.07 E-value=0.0022 Score=63.93 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=63.0
Q ss_pred CCceeeccCCHHh---HhccCCcceEEecCCc------hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 323 GRGKIVLQAPQTQ---VLGHFSIGVFVTHCGA------NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 323 ~~~~v~~w~pq~~---lL~~~~v~~~I~HgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
+|+.+.+|+|+.+ +++.+++.++.+.-+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++.+
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCCC
Confidence 3676779998765 5777886666555432 2368999999999998754321 11122 2 578777654
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRHLK 423 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~l~ 423 (434)
+.++++++|.++++|+ ...+++++++..
T Consensus 359 --d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 359 --SVEALVAAIAALARQALLRPKLGTVAREYA 388 (412)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7899999999999872 345556655543
No 57
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0025 Score=61.75 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=65.8
Q ss_pred EEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 345 FVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 345 ~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
|+-+||+| .+|++++|+|+|.=|....|.+-++++.+. |.|+.++ +++.|.+++..+++|+ ..+|.+++.++
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~----~~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE----DADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC----CHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56699987 689999999999999999999999999999 9999996 3789999999998874 55666666666
Q ss_pred HHHHHHH
Q 013878 423 KEIVIEA 429 (434)
Q Consensus 423 ~~~~~~a 429 (434)
-+..+.|
T Consensus 401 v~~~~ga 407 (419)
T COG1519 401 LAQNRGA 407 (419)
T ss_pred HHHhhHH
Confidence 5555544
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.00 E-value=0.0021 Score=61.57 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCceeeccCC-HHhHhccCCcceEEecC----CchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAP-QTQVLGHFSIGVFVTHC----GANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~p-q~~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+++...++.. -.+++..++ ++|... --+++.||+++|+|+|+.+..+ +...+.+. +.|..++.+ +.
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~~--~~ 316 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPPG--DA 316 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECCC--CH
Confidence 4555556543 346677777 566533 2468999999999999976533 34445555 778877644 78
Q ss_pred HHHHHHHHHHhcc
Q 013878 398 SGVLQSLELMFSH 410 (434)
Q Consensus 398 ~~l~~av~~ll~~ 410 (434)
+++++++.+++.+
T Consensus 317 ~~~~~~i~~l~~~ 329 (359)
T cd03808 317 EALADAIERLIED 329 (359)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999988
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.99 E-value=0.0012 Score=62.87 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCceeeccC-CHHhHhccCCcceEEecC---C-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHc-cEEEEcCCCc
Q 013878 322 SGRGKIVLQA-PQTQVLGHFSIGVFVTHC---G-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWG-IGVKVEGIVL 395 (434)
Q Consensus 322 ~~~~~v~~w~-pq~~lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~ 395 (434)
..++.+.++. .-.+++..++ ++|.-. | -+++.||+++|+|+|+.+..+.+.. +.+. | .|..++..
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~~-- 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPNG-- 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCCC--
Confidence 3445555652 2346677777 555543 2 4689999999999998776554432 3343 5 78777543
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENV 419 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a 419 (434)
+.++++++|.++++| ++.+++.
T Consensus 305 ~~~~~~~~i~~ll~~--~~~~~~~ 326 (348)
T cd03820 305 DVEALAEALLRLMED--EELRKRM 326 (348)
T ss_pred CHHHHHHHHHHHHcC--HHHHHHH
Confidence 679999999999998 5544433
No 60
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.99 E-value=0.0031 Score=60.49 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=60.2
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe----cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT----HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+++.+.+++++.+ ++..++ ++|. -|.-+++.||+++|+|+|+.+. ......+.+. +.|..++..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC
Confidence 456777789997654 566677 5553 2445689999999999998775 3345555555 788877654
Q ss_pred CcCHHHHHHHHHHHhcc
Q 013878 394 VLTKSGVLQSLELMFSH 410 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~ 410 (434)
+.+++++++.+++++
T Consensus 327 --~~~~l~~~i~~~~~~ 341 (374)
T cd03801 327 --DPEALAEAILRLLDD 341 (374)
T ss_pred --CHHHHHHHHHHHHcC
Confidence 589999999999998
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.95 E-value=0.0024 Score=63.48 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCCceeeccCCHH---hHhccCCcceEEe---cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCC
Q 013878 322 SGRGKIVLQAPQT---QVLGHFSIGVFVT---HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIV 394 (434)
Q Consensus 322 ~~~~~v~~w~pq~---~lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 394 (434)
.+++.+.+++++. +++..++ +||. +-|+ .++.||+++|+|+|+....+ ....+.+. +.|..++.+
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~-~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADG-ETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccC-CceEECCCC-
Confidence 4577777999875 4577788 6553 3344 47999999999999876533 33445554 678777543
Q ss_pred cCHHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 395 LTKSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 395 ~~~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
+.++++++|.+++++. ..++++++++.
T Consensus 354 -d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 354 -DPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7899999999999882 23444444443
No 62
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.94 E-value=0.0029 Score=61.80 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCCceeeccCCH-HhHhccCCcceEEe---c-CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 322 SGRGKIVLQAPQ-TQVLGHFSIGVFVT---H-CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 322 ~~~~~v~~w~pq-~~lL~~~~v~~~I~---H-gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
.+++.+.++.++ .+++..++ ++|. . |.-.++.||+++|+|+|+.... ..+..+.+- ..|..++.+ +
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~~~--~ 322 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVDVG--D 322 (371)
T ss_pred CceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcCCC--C
Confidence 455666676654 46677777 5553 2 3345999999999999986543 345555554 577766543 7
Q ss_pred HHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 397 KSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 397 ~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
.+++++++.+++++. ..++++++++.
T Consensus 323 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 323 VEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 899999999999872 23445555554
No 63
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.79 E-value=0.0078 Score=58.08 Aligned_cols=92 Identities=22% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCceeeccCCHHhH---hccCCcceEEec-CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 322 SGRGKIVLQAPQTQV---LGHFSIGVFVTH-CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 322 ~~~~~v~~w~pq~~l---L~~~~v~~~I~H-gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
.+++.+.+|+++.++ +..+++-++-++ .| -+++.||+++|+|+|+.+..+ ....+.+ +.|...+. +
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~~---~ 331 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVDD---D 331 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeCC---C
Confidence 467777799996654 666774333232 23 357899999999999976432 3333333 67776653 4
Q ss_pred HHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 397 KSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 397 ~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
.++++++|.+++++. ..++.+++++.
T Consensus 332 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 332 VDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 499999999999982 23344444443
No 64
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.78 E-value=0.0035 Score=60.57 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=57.6
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe--c--------CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccE
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT--H--------CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIG 387 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~--H--------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 387 (434)
.++++.+.+|+++.+ ++..++ ++|. . |.-+++.||+++|+|+|+.+.. +. ...+.+. ..|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~-~~---~~~i~~~-~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS-GI---PELVEDG-ETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC-Cc---chhhhCC-Cce
Confidence 456777889998665 456677 5554 2 2346889999999999987653 22 2233333 488
Q ss_pred EEEcCCCcCHHHHHHHHHHHhcc
Q 013878 388 VKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 388 ~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
..++.+ +.+++++++.+++++
T Consensus 307 ~~~~~~--~~~~l~~~i~~~~~~ 327 (355)
T cd03799 307 LLVPPG--DPEALADAIERLLDD 327 (355)
T ss_pred EEeCCC--CHHHHHHHHHHHHhC
Confidence 887644 889999999999998
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.77 E-value=0.012 Score=56.57 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=58.7
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe----cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT----HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+++.+.+|+++.+ ++..++ ++|. -|.-+++.||+++|+|+|+-+..+ ....+.+. +.|...+..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~-~~g~~~~~~ 329 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYYAAAD--VFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDG-ENGLLVPPG 329 (377)
T ss_pred CcceEEEeCCCCHHHHHHHHHhcC--eeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCC-cceeEECCC
Confidence 346777779999764 456667 4542 244568899999999999876533 34455554 667777544
Q ss_pred CcCHHHHHHHHHHHhcc
Q 013878 394 VLTKSGVLQSLELMFSH 410 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~ 410 (434)
+.+++.+++.+++++
T Consensus 330 --~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 --DPEALAEAILRLLAD 344 (377)
T ss_pred --CHHHHHHHHHHHhcC
Confidence 789999999999998
No 66
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.68 E-value=0.0058 Score=58.61 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=55.1
Q ss_pred CCCceeeccCCHHh---HhccCCcceEEe--cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 322 SGRGKIVLQAPQTQ---VLGHFSIGVFVT--HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 322 ~~~~~v~~w~pq~~---lL~~~~v~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
.+++...+++++.+ +++.+++-++-+ +-|+ .++.||+++|+|+|+....+ +...+.+. ..|..++.
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~-~~g~l~~~--- 294 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDG-VTGFLVDS--- 294 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCC-CcEEEeCC---
Confidence 56777789998864 567777444433 2444 47999999999999877532 22333332 36777653
Q ss_pred CHHHHHHHHHHHhcc
Q 013878 396 TKSGVLQSLELMFSH 410 (434)
Q Consensus 396 ~~~~l~~av~~ll~~ 410 (434)
.+++++++++++..
T Consensus 295 -~~~l~~~l~~l~~~ 308 (335)
T cd03802 295 -VEELAAAVARADRL 308 (335)
T ss_pred -HHHHHHHHHHHhcc
Confidence 89999999998764
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.66 E-value=0.02 Score=56.49 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=61.6
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe---cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT---HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
+.+++.+.+++|+.+ ++..++ ++|. .-|+ .++.||+++|+|+|+.-..+ ....+.+. +.|..++
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC--
Confidence 346777889998864 566777 5553 2222 47889999999999875433 23345454 5677664
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
.+.++++++|.+++++. ..++++++++
T Consensus 349 -~~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 -PTPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred -CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 27899999999999982 3345555544
No 68
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.66 E-value=0.07 Score=56.88 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=41.9
Q ss_pred eEEe---cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 344 VFVT---HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 344 ~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
+||. .=|+ .++.||++||+|+|+.-..+ ....+.+- ..|.-++.. +.++++++|.+++
T Consensus 646 VfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg-~tGfLVdp~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 646 IFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDG-VSGFHIDPY--HGEEAAEKIVDFF 707 (784)
T ss_pred EEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEeCCC--CHHHHHHHHHHHH
Confidence 6665 2233 48899999999999876543 44455554 568888654 7799999998876
No 69
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.58 E-value=0.01 Score=56.56 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCceeeccCCH-HhHhccCCcceEEe--c--CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 322 SGRGKIVLQAPQ-TQVLGHFSIGVFVT--H--CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 322 ~~~~~v~~w~pq-~~lL~~~~v~~~I~--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
.+++.+.+|.+. .+++..++ ++|. + |.-+++.||+++|+|+|+.... .....+.+. +.|...+.. +
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~--~ 315 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG--D 315 (353)
T ss_pred CccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC--C
Confidence 456666677654 36777777 5553 2 2346789999999999986543 445566665 788887654 6
Q ss_pred HHHH---HHHHHHHhcc
Q 013878 397 KSGV---LQSLELMFSH 410 (434)
Q Consensus 397 ~~~l---~~av~~ll~~ 410 (434)
.+.+ .+++.+++.+
T Consensus 316 ~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 316 EAALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 6676 5666666666
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.54 E-value=0.024 Score=54.92 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=56.5
Q ss_pred cCCCceeeccCC-HH---hHhccCCcceEEecC----CchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 321 TSGRGKIVLQAP-QT---QVLGHFSIGVFVTHC----GANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 321 ~~~~~~v~~w~p-q~---~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
...++...+|++ +. .++..++ ++|.-. .-+++.||+++|+|+|+....+ ....+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCC-CceEEeCC
Confidence 445666669998 44 4577777 676643 3478999999999999876432 22233343 56776654
Q ss_pred CCcCHHHHHHHHHHHhcc
Q 013878 393 IVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~ 410 (434)
. +.+++++++.+++++
T Consensus 315 ~--~~~~~~~~l~~l~~~ 330 (365)
T cd03825 315 G--DPEDLAEGIEWLLAD 330 (365)
T ss_pred C--CHHHHHHHHHHHHhC
Confidence 3 789999999999988
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.50 E-value=0.033 Score=53.82 Aligned_cols=96 Identities=20% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCCceeeccCC-HHhHhccCCcceEEe--cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 322 SGRGKIVLQAP-QTQVLGHFSIGVFVT--HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 322 ~~~~~v~~w~p-q~~lL~~~~v~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
.+++.+.+|.+ ..+++..+++-++-+ +-|+ +++.||+++|+|+|+.-..+ +...+.+. +.|..++.+ +.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~-~~g~~~~~~--~~ 317 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPG-ETGLLVPPG--DA 317 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCC-CceEEeCCC--CH
Confidence 35666777743 346677788544433 2333 58999999999999875432 34445554 578877644 88
Q ss_pred HHHHHHHHHHhc-cC--cHHHHHHHHHHHH
Q 013878 398 SGVLQSLELMFS-HE--GKKMRENVRHLKE 424 (434)
Q Consensus 398 ~~l~~av~~ll~-~~--~~~~r~~a~~l~~ 424 (434)
++++++|.+++. ++ ..+++++|++..+
T Consensus 318 ~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 318 EALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999999965554 41 3445555555443
No 72
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.43 E-value=0.00013 Score=59.75 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=47.6
Q ss_pred ccCCH-HhHhccCCcceEEecCCchhHHHHHHcCcccccCC----CcCChHHHHHHHHHHHccEEEE
Q 013878 329 LQAPQ-TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRP----FFGDHRMNARLVEEVWGIGVKV 390 (434)
Q Consensus 329 ~w~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P----~~~DQ~~na~~v~~~~G~G~~l 390 (434)
.+-|- .+....++ ++|+|+|+||++|.|..|+|.|+++ +-..|-.-|..+++. |.=..-
T Consensus 69 ~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 69 DFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred ecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 45554 45566677 9999999999999999999999999 345688999999888 765554
No 73
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.43 E-value=0.095 Score=50.43 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=49.3
Q ss_pred ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 329 LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 329 ~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
.-+.-.++|.+++ +||+-|| ..+.||-..|+|.|.+ +-++-...-+.+.+. |.-... -+.+++.+.|++.+
T Consensus 238 ~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll~~~----~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 238 EPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLLYHS----TDPDEIVEYVRKNL 308 (335)
T ss_pred CCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCeEec----CCHHHHHHHHHHhh
Confidence 4455568999999 9999887 6778999999999975 223323344556666 762222 36778887776654
Q ss_pred c
Q 013878 409 S 409 (434)
Q Consensus 409 ~ 409 (434)
.
T Consensus 309 ~ 309 (335)
T PF04007_consen 309 G 309 (335)
T ss_pred h
Confidence 4
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.35 E-value=0.018 Score=57.21 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=53.5
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe---cCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
+.+++.+.+|+++.+ +++.++ ++|. +-|+| ++.||+++|+|+|+....+- ...+ .. |.+... .
T Consensus 248 l~~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i-~~-~~~~~~-~- 317 (398)
T cd03796 248 LQDRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVL-PP-DMILLA-E- 317 (398)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhe-eC-Cceeec-C-
Confidence 346677779998755 455677 5553 33444 99999999999999876432 2233 23 444333 2
Q ss_pred CcCHHHHHHHHHHHhcc
Q 013878 394 VLTKSGVLQSLELMFSH 410 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~ 410 (434)
.+.+++++++.+++++
T Consensus 318 -~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 -PDVESIVRKLEEAISI 333 (398)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 2789999999999986
No 75
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.31 E-value=0.047 Score=53.32 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=61.2
Q ss_pred CHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCC-cCChHHHHHHHHHHHccEEEEc-------------CCCcCH
Q 013878 332 PQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF-FGDHRMNARLVEEVWGIGVKVE-------------GIVLTK 397 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~l~-------------~~~~~~ 397 (434)
.-.+++..++ +.+.-.| ..|+|+...|+|||++=- ..=-...|+++... .. +.+. .+..++
T Consensus 253 ~~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~~~~ 327 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQEDATP 327 (373)
T ss_pred chHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhcccCCH
Confidence 3445666666 4444444 367899999999997632 22234455665543 32 2221 357899
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCCC
Q 013878 398 SGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGPK 433 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~g 433 (434)
+.|++++.++++| ++.++..+...+.+++.++.|
T Consensus 328 ~~i~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~ 361 (373)
T PF02684_consen 328 ENIAAELLELLEN--PEKRKKQKELFREIRQLLGPG 361 (373)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 666666666666666655543
No 76
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.22 E-value=0.077 Score=51.30 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=58.1
Q ss_pred cCCCceeeccCCH-HhHhccCCcceEEec----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 321 TSGRGKIVLQAPQ-TQVLGHFSIGVFVTH----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 321 ~~~~~~v~~w~pq-~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
..+++...++..+ .+++..++ ++|+- |--+++.||+++|+|+|+....+- ...+.+ +.|..+..+
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~--~~~~~~~~~-- 316 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD--LVKFLSLDE-- 316 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc--CccEEeCCC--
Confidence 3466666676433 46777777 44432 345789999999999998765442 222333 455554332
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENVRH 421 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a~~ 421 (434)
++++++++|.++++| ++.+++...
T Consensus 317 ~~~~~a~~i~~l~~~--~~~~~~~~~ 340 (358)
T cd03812 317 SPEIWAEEILKLKSE--DRRERSSES 340 (358)
T ss_pred CHHHHHHHHHHHHhC--cchhhhhhh
Confidence 579999999999999 555544433
No 77
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.12 E-value=0.23 Score=51.07 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=53.4
Q ss_pred HhHhccCCcceEEecCCchhHHHHHHcCcccccCC-CcCChHHHHHHHHH-----------HHccE--EEEc--CCCcCH
Q 013878 334 TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRP-FFGDHRMNARLVEE-----------VWGIG--VKVE--GIVLTK 397 (434)
Q Consensus 334 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~-----------~~G~G--~~l~--~~~~~~ 397 (434)
.++++.++ +.+.-+|- .|+|+..+|+|||++= ...=-...++++.+ ..|-. .++- .++.++
T Consensus 483 ~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECD--CALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 45566666 66666654 5789999999999852 11112344555554 10111 1111 246899
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhCC
Q 013878 398 SGVLQSLELMFSHEGKKMRENVRHLKEIVIEAAGP 432 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~~~ 432 (434)
++|++++ ++|.| ++.|++.++=-+.+++..++
T Consensus 560 e~La~~l-~lL~d--~~~r~~~~~~l~~lr~~Lg~ 591 (608)
T PRK01021 560 EEVAAAL-DILKT--SQSKEKQKDACRDLYQAMNE 591 (608)
T ss_pred HHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhcC
Confidence 9999997 78887 55555444444444444444
No 78
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.06 E-value=0.0028 Score=61.31 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=65.7
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe---cCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+|+.+.+|+++.+ ++..+++.++.+ +-|+| ++.||+++|+|+|+....+....... +. +.|..++.+
T Consensus 242 ~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~~ 317 (357)
T cd03795 242 LLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPPG 317 (357)
T ss_pred CcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCCC
Confidence 456788889999864 566677444433 23444 68899999999999776555543332 24 678777543
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRHLK 423 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~l~ 423 (434)
+.++++++|.++++|+ ..++++++++..
T Consensus 318 --d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (357)
T cd03795 318 --DPAALAEAIRRLLEDPELRERLGEAARERA 347 (357)
T ss_pred --CHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 7899999999999982 234445554443
No 79
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.77 E-value=0.0061 Score=59.03 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=71.5
Q ss_pred ccCCCceeeccCCHHhHhcc--CCcceEEecC-------Cc------hhHHHHHHcCcccccCCCcCChHHHHHHHHHHH
Q 013878 320 RTSGRGKIVLQAPQTQVLGH--FSIGVFVTHC-------GA------NSVCESIANGVLMICRPFFGDHRMNARLVEEVW 384 (434)
Q Consensus 320 ~~~~~~~v~~w~pq~~lL~~--~~v~~~I~Hg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 384 (434)
...+|+...+|+|+.++..+ .+++++...- .+ +-+.+++++|+|+|+++ +...+..|++.
T Consensus 204 ~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~- 278 (333)
T PRK09814 204 ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN- 278 (333)
T ss_pred ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-
Confidence 34567778899999877432 2444443321 11 12678899999999975 45677888888
Q ss_pred ccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 013878 385 GIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIE 428 (434)
Q Consensus 385 G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~ 428 (434)
++|+.++ +.+++.++++++..++-.+|++|++++++++++
T Consensus 279 ~~G~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 279 GLGFVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred CceEEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 9999996 568999999886432245789999999998864
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.72 E-value=0.0069 Score=52.21 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=63.1
Q ss_pred cCCCceeeccCCH---HhHhccCCcceEEec----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQ---TQVLGHFSIGVFVTH----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq---~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
..+++.+.++.++ ..++..++ ++|+. +.-.++.||+++|+|+|+.- -..+...+.+. +.|..++..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~~ 143 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDPN 143 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEESTT
T ss_pred ccccccccccccccccccccccce--eccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCCC
Confidence 4467777788873 35566777 77765 45568999999999999754 45666666665 679888765
Q ss_pred CcCHHHHHHHHHHHhccCcHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHEGKKMRENV 419 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~~~~~r~~a 419 (434)
+.++++++|.+++.+ ++.+++.
T Consensus 144 --~~~~l~~~i~~~l~~--~~~~~~l 165 (172)
T PF00534_consen 144 --DIEELADAIEKLLND--PELRQKL 165 (172)
T ss_dssp --SHHHHHHHHHHHHHH--HHHHHHH
T ss_pred --CHHHHHHHHHHHHCC--HHHHHHH
Confidence 999999999999998 5444433
No 81
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.71 E-value=0.0085 Score=58.40 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred cCCCceeeccCCHHhH---hccCCcceEEec----------CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccE
Q 013878 321 TSGRGKIVLQAPQTQV---LGHFSIGVFVTH----------CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIG 387 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~l---L~~~~v~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 387 (434)
..+++.+.+++|+.++ +..++ ++|.. |--+++.||+++|+|+|+-+..+ +...+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-Cee
Confidence 3567777799987655 66777 55532 22468999999999999877643 55556665 788
Q ss_pred EEEcCCCcCHHHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 388 VKVEGIVLTKSGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 388 ~~l~~~~~~~~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
..++.. +.+++++++.++++|. ..++++++++
T Consensus 316 ~~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 316 LLVPEG--DVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EEECCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 877643 7799999999999982 2234444444
No 82
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0089 Score=48.30 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=51.9
Q ss_pred HhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcC--------ChHHHHHHHHHHHccEEEEcCCCc-CHHHHHHHH
Q 013878 334 TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFG--------DHRMNARLVEEVWGIGVKVEGIVL-TKSGVLQSL 404 (434)
Q Consensus 334 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~~~-~~~~l~~av 404 (434)
..+...++ .+|+|||.||++.++..++|+|++|-.. .|-.-|..+++. +.=+....... -.+.++..+
T Consensus 60 Qsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spte~~L~a~l~~s~ 136 (161)
T COG5017 60 QSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPTELVLQAGLQVSV 136 (161)
T ss_pred HHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCCchhhHHhHhhhh
Confidence 34555566 9999999999999999999999999422 477778888887 77777653222 334444444
Q ss_pred HHHhc
Q 013878 405 ELMFS 409 (434)
Q Consensus 405 ~~ll~ 409 (434)
.+++.
T Consensus 137 ~~v~~ 141 (161)
T COG5017 137 ADVLH 141 (161)
T ss_pred hhhcC
Confidence 44544
No 83
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.59 E-value=0.012 Score=58.60 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCceeeccCCHHhHh---ccCCcceEEecCC----chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 323 GRGKIVLQAPQTQVL---GHFSIGVFVTHCG----ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 323 ~~~~v~~w~pq~~lL---~~~~v~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
+++...+|+++.++. ...++.+||...- -++++||+++|+|+|+....+ ....+.+. +.|..++. .-
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~-~~G~l~~~-~~ 362 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNG-GNGLLLSK-DP 362 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCC-CcEEEeCC-CC
Confidence 456667999987544 4444447775442 357899999999999865433 44455553 48887753 24
Q ss_pred CHHHHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
+.++++++|.++++|+ ..+++++|++.
T Consensus 363 ~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 363 TPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7899999999999972 34455555554
No 84
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.50 E-value=0.017 Score=57.03 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=57.1
Q ss_pred cCCCceeeccCCHHhH---hccCCcceEEec----CCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 321 TSGRGKIVLQAPQTQV---LGHFSIGVFVTH----CGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~l---L~~~~v~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
.+.++.+.+++++.++ ++.++ +||.. -|. .+++||+++|+|+|+....+ +...+.+. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEeC
Confidence 3456667799987655 66777 55542 343 56789999999999987532 33444454 56765421
Q ss_pred CCcCHHHHHHHHHHHhcc
Q 013878 393 IVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~ 410 (434)
..+.++++++|.++++|
T Consensus 328 -~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 328 -PMTSDSIISDINRTLAD 344 (380)
T ss_pred -CCCHHHHHHHHHHHHcC
Confidence 23789999999999998
No 85
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.31 E-value=0.027 Score=56.13 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=63.2
Q ss_pred cCCCceeeccCCHHhH---hccCCcceEEe--c-------CCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccE
Q 013878 321 TSGRGKIVLQAPQTQV---LGHFSIGVFVT--H-------CGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIG 387 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~l---L~~~~v~~~I~--H-------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 387 (434)
+.+++.+.+|+|+.++ +..++ +||. . =|. +++.||+++|+|+|+....+ ....+.+- ..|
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G 349 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSG 349 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-Cce
Confidence 4567777899998764 55677 5554 2 244 56899999999999976543 33344444 578
Q ss_pred EEEcCCCcCHHHHHHHHHHHhc-cC--cHHHHHHHHH
Q 013878 388 VKVEGIVLTKSGVLQSLELMFS-HE--GKKMRENVRH 421 (434)
Q Consensus 388 ~~l~~~~~~~~~l~~av~~ll~-~~--~~~~r~~a~~ 421 (434)
..++.+ +.++++++|.++++ |. ..++.+++++
T Consensus 350 ~lv~~~--d~~~la~ai~~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 350 WLVPEN--DAQALAQRLAAFSQLDTDELAPVVKRARE 384 (406)
T ss_pred EEeCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777654 78999999999998 71 2234444443
No 86
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.28 E-value=0.0069 Score=58.85 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=60.8
Q ss_pred ccCCCceeeccCCHHh---HhccCCcceEEecCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 320 RTSGRGKIVLQAPQTQ---VLGHFSIGVFVTHCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 320 ~~~~~~~v~~w~pq~~---lL~~~~v~~~I~HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
...+|+.+.+++|+.+ +++.+++-++-+.-|+| ++.||+++|+|+|+....+ ....+.+. +.|..++.+
T Consensus 239 ~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~-- 311 (351)
T cd03804 239 KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ-- 311 (351)
T ss_pred hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC--
Confidence 3567888889999854 57778843333444444 5679999999999986533 33345554 688887654
Q ss_pred CHHHHHHHHHHHhcc
Q 013878 396 TKSGVLQSLELMFSH 410 (434)
Q Consensus 396 ~~~~l~~av~~ll~~ 410 (434)
+.++++++|.++++|
T Consensus 312 ~~~~la~~i~~l~~~ 326 (351)
T cd03804 312 TVESLAAAVERFEKN 326 (351)
T ss_pred CHHHHHHHHHHHHhC
Confidence 788999999999988
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=96.28 E-value=0.022 Score=55.85 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=60.0
Q ss_pred CCceeeccCCH---HhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 323 GRGKIVLQAPQ---TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 323 ~~~~v~~w~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
+++.+.+-+++ ..++.+++ +||+-.|. .+.||+++|+|+|+.+-.++++. +.+. |.+..+. -++++
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~---~d~~~ 323 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG---TDKEN 323 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC---CCHHH
Confidence 45666554544 45566777 88887664 47999999999999876666653 3345 7776663 37899
Q ss_pred HHHHHHHHhccCcHHHHHHH
Q 013878 400 VLQSLELMFSHEGKKMRENV 419 (434)
Q Consensus 400 l~~av~~ll~~~~~~~r~~a 419 (434)
|.++++++++| ++.+++.
T Consensus 324 i~~ai~~ll~~--~~~~~~~ 341 (365)
T TIGR00236 324 ITKAAKRLLTD--PDEYKKM 341 (365)
T ss_pred HHHHHHHHHhC--hHHHHHh
Confidence 99999999988 6555443
No 88
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.22 E-value=0.016 Score=56.07 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=62.6
Q ss_pred cCCCceee-ccCCHHh---HhccCCcceEEe--c----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEE
Q 013878 321 TSGRGKIV-LQAPQTQ---VLGHFSIGVFVT--H----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKV 390 (434)
Q Consensus 321 ~~~~~~v~-~w~pq~~---lL~~~~v~~~I~--H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 390 (434)
..+++... +|+|+.+ ++..++ ++|. . |--+++.||+++|+|+|+.+..+ ...+.+. +.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 34566666 5688754 455666 5553 2 23457889999999999987654 2334455 778777
Q ss_pred cCCCcCHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 013878 391 EGIVLTKSGVLQSLELMFSHE--GKKMRENVRHLK 423 (434)
Q Consensus 391 ~~~~~~~~~l~~av~~ll~~~--~~~~r~~a~~l~ 423 (434)
+.. +.+++++++.+++++. ..++++++++..
T Consensus 317 ~~~--d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 349 (366)
T cd03822 317 PPG--DPAALAEAIRRLLADPELAQALRARAREYA 349 (366)
T ss_pred cCC--CHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 654 6899999999999982 344555555443
No 89
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.79 E-value=0.03 Score=54.86 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCceeeccCCH-HhHhccCCcceEEecC-C-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 322 SGRGKIVLQAPQ-TQVLGHFSIGVFVTHC-G-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 322 ~~~~~v~~w~pq-~~lL~~~~v~~~I~Hg-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
++++.+.++.++ ..++..+++-++.++. | -.++.||+++|+|+|+....+- ....+.+. ..|..++. -+.+
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~-~~G~lv~~--~d~~ 333 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDG-ENGYLVPK--GDIE 333 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccC-CCceEeCC--CcHH
Confidence 455555565544 3667777854555543 3 4589999999999998754321 23344454 67777754 3789
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHHH
Q 013878 399 GVLQSLELMFSHE--GKKMRENVRHLKEI 425 (434)
Q Consensus 399 ~l~~av~~ll~~~--~~~~r~~a~~l~~~ 425 (434)
+++++|.+++.+. ..++.++|++.++.
T Consensus 334 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 334 ALAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999982 34555666555443
No 90
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.57 E-value=0.051 Score=53.88 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=59.7
Q ss_pred CCceeeccCCH-HhHhccCCcceEEec--CCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 323 GRGKIVLQAPQ-TQVLGHFSIGVFVTH--CGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 323 ~~~~v~~w~pq-~~lL~~~~v~~~I~H--gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
+++.+.+++++ ..++..+++-++-++ .|.+ .+.||+++|+|+|+.+...+.- .... |.|..+. -+.+
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---~~~~ 350 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---ADPA 350 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC---CCHH
Confidence 46666788875 356777783332232 3543 6999999999999998643321 1233 6777664 3789
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHH
Q 013878 399 GVLQSLELMFSHE--GKKMRENVRHL 422 (434)
Q Consensus 399 ~l~~av~~ll~~~--~~~~r~~a~~l 422 (434)
+++++|.++++|. ..++.+++++.
T Consensus 351 ~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 351 DFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999982 23344555443
No 91
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=95.53 E-value=0.05 Score=54.81 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred cCCCceeeccCCHHhH---hccC--CcceEEecC---C-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEc
Q 013878 321 TSGRGKIVLQAPQTQV---LGHF--SIGVFVTHC---G-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVE 391 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~l---L~~~--~v~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 391 (434)
+.+++...+++++.++ +..+ ++.+||... | -.+++||+++|+|+|+.-..+ +...+.+. ..|..++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANC-RNGLLVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCC-CcEEEeC
Confidence 3456666688887665 4333 123777643 3 358999999999999886533 33444443 5688776
Q ss_pred CCCcCHHHHHHHHHHHhcc
Q 013878 392 GIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 392 ~~~~~~~~l~~av~~ll~~ 410 (434)
.+ ++++++++|.++++|
T Consensus 390 ~~--d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 390 VL--DLEAIASALEDALSD 406 (439)
T ss_pred CC--CHHHHHHHHHHHHhC
Confidence 54 789999999999998
No 92
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.48 E-value=1.3 Score=39.19 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEEee
Q 013878 50 FGSHGLTIFNLMLKLASAAPNLKFSFFS 77 (434)
Q Consensus 50 ~~GHv~P~l~La~~L~~r~~Gh~Vt~~t 77 (434)
..|+-.....|++.|.++ ||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~~--g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARR--GHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHc--CCeEEEEE
Confidence 679999999999999999 99999998
No 93
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=95.48 E-value=0.055 Score=52.77 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=55.6
Q ss_pred CCceeeccCCHH---hHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 323 GRGKIVLQAPQT---QVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 323 ~~~~v~~w~pq~---~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
+++.+.+...+. .++..++ +||+..| |.+.||+++|+|+|+++...+ +..+.+. |+++.+.. +.++
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~---~~~~ 326 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT---DPEA 326 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC---CHHH
Confidence 455555555544 4455677 9999998 778899999999999874322 3345555 77666532 5899
Q ss_pred HHHHHHHHhcc
Q 013878 400 VLQSLELMFSH 410 (434)
Q Consensus 400 l~~av~~ll~~ 410 (434)
|.++|++++++
T Consensus 327 i~~~i~~ll~~ 337 (363)
T cd03786 327 ILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHhcC
Confidence 99999999998
No 94
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.15 E-value=2.7 Score=40.80 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=62.2
Q ss_pred Cceee---ccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHH
Q 013878 324 RGKIV---LQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGV 400 (434)
Q Consensus 324 ~~~v~---~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l 400 (434)
|+.+. ++.+...++.++. +++|-.| |..-||-..|+|.+++=..-++|. ..+. |.-+-+. .+.+.|
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lvg---~~~~~i 331 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILVG---TDEENI 331 (383)
T ss_pred cEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEeC---ccHHHH
Confidence 44544 5678888898887 8888776 356799999999999999999998 2343 5555554 367999
Q ss_pred HHHHHHHhccCcHHHHH
Q 013878 401 LQSLELMFSHEGKKMRE 417 (434)
Q Consensus 401 ~~av~~ll~~~~~~~r~ 417 (434)
.+++++++++ ++..+
T Consensus 332 ~~~~~~ll~~--~~~~~ 346 (383)
T COG0381 332 LDAATELLED--EEFYE 346 (383)
T ss_pred HHHHHHHhhC--hHHHH
Confidence 9999999999 66665
No 95
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=94.90 E-value=0.1 Score=50.93 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=61.6
Q ss_pred cCCCceeeccCCH--Hh---HhccCCcceEEe--c--CCchhHHHHHHcCcccccCC-CcCChHHHHHHHHHHHccEEEE
Q 013878 321 TSGRGKIVLQAPQ--TQ---VLGHFSIGVFVT--H--CGANSVCESIANGVLMICRP-FFGDHRMNARLVEEVWGIGVKV 390 (434)
Q Consensus 321 ~~~~~~v~~w~pq--~~---lL~~~~v~~~I~--H--gG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l 390 (434)
+++++...+|+++ .. .+...+ ++|. + |--.++.||+++|+|+|+.- ..+ ....+.+. ..|..+
T Consensus 234 l~~~v~f~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv 306 (359)
T PRK09922 234 IEQRIIWHGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELY 306 (359)
T ss_pred CCCeEEEecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEE
Confidence 4567777788754 33 334455 5554 2 22468999999999999875 433 22344444 568777
Q ss_pred cCCCcCHHHHHHHHHHHhccC----cHHHHHHHHHHHH
Q 013878 391 EGIVLTKSGVLQSLELMFSHE----GKKMRENVRHLKE 424 (434)
Q Consensus 391 ~~~~~~~~~l~~av~~ll~~~----~~~~r~~a~~l~~ 424 (434)
+.. +.++++++|.++++++ ...++++++++.+
T Consensus 307 ~~~--d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 307 TPG--NIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred CCC--CHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 543 8999999999999983 1234555555544
No 96
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=94.89 E-value=0.081 Score=51.80 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCceeeccCC-HHhHhccCCcceEE--ec--CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAP-QTQVLGHFSIGVFV--TH--CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~p-q~~lL~~~~v~~~I--~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+++.+.+... -.+++..++ ++| ++ |--+++.||+++|+|+|+....+ +...+.+- ..|..++.+ +.
T Consensus 255 ~~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~~--d~ 325 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPPG--DA 325 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCCC--CH
Confidence 3444444332 346677777 555 32 33468999999999999977543 33344443 567777643 78
Q ss_pred HHHHHHHHHHhcc
Q 013878 398 SGVLQSLELMFSH 410 (434)
Q Consensus 398 ~~l~~av~~ll~~ 410 (434)
++++++|.+++++
T Consensus 326 ~~la~~i~~l~~~ 338 (374)
T TIGR03088 326 VALARALQPYVSD 338 (374)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999988
No 97
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=94.83 E-value=0.16 Score=48.66 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=51.3
Q ss_pred CCceeeccCC-HHhHhccCCcceEEecCC----chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAP-QTQVLGHFSIGVFVTHCG----ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~p-q~~lL~~~~v~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+++.+.+... -.+++..++ ++|.... -+++.||+++|+|+|+.... .+...+.+ .|..++.+ +.
T Consensus 251 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~~~--~~ 319 (365)
T cd03807 251 DKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVPPG--DP 319 (365)
T ss_pred ceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeCCC--CH
Confidence 4444444332 346777777 6665443 37899999999999986543 33444433 44455433 68
Q ss_pred HHHHHHHHHHhcc
Q 013878 398 SGVLQSLELMFSH 410 (434)
Q Consensus 398 ~~l~~av~~ll~~ 410 (434)
+++++++.+++++
T Consensus 320 ~~l~~~i~~l~~~ 332 (365)
T cd03807 320 EALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999998
No 98
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.78 E-value=0.18 Score=51.44 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCCceeeccCCHHhHhccCCcceEEec----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHH----H-ccEEEEcC
Q 013878 322 SGRGKIVLQAPQTQVLGHFSIGVFVTH----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEV----W-GIGVKVEG 392 (434)
Q Consensus 322 ~~~~~v~~w~pq~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~-G~G~~l~~ 392 (434)
.+|+.+.+...-.+++...+ ++|.- |--+++.||+++|+|+|+-.. ......+.+. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 45666667555667777777 55432 234689999999999998543 3333444441 0 26777754
Q ss_pred CCcCHHHHHHHHHHHhcc
Q 013878 393 IVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~ 410 (434)
. +.+++++++.++++|
T Consensus 427 ~--d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 A--DPEALARAILRLLKD 442 (475)
T ss_pred C--CHHHHHHHHHHHhcC
Confidence 3 789999999999998
No 99
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.70 E-value=0.13 Score=43.07 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHHhcchhHHHH
Q 013878 56 TIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQKATPENFKKG 135 (434)
Q Consensus 56 P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (434)
=+..|+++|.++ ||+|++++........+.. ..++++..++- +..... ....... ..
T Consensus 6 ~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~--~~~~~~~------------~~ 62 (160)
T PF13579_consen 6 YVRELARALAAR--GHEVTVVTPQPDPEDDEEE-----EDGVRVHRLPL--PRRPWP--LRLLRFL------------RR 62 (160)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEE---GGG-SEE-----ETTEEEEEE----S-SSSG--GGHCCHH------------HH
T ss_pred HHHHHHHHHHHC--CCEEEEEecCCCCcccccc-----cCCceEEeccC--Cccchh--hhhHHHH------------HH
Confidence 467899999999 9999999976543321111 12788777752 111100 0001111 11
Q ss_pred HHHHHhccCCCccEEEECCC-chhHHHHHH-HcCCCeEeEc
Q 013878 136 LNAAVFETGRKISCMLTDAF-LTFSGEMAR-DMHIPWLPVF 174 (434)
Q Consensus 136 l~~l~~~~~~~pd~vI~D~~-~~~~~~vA~-~lgIP~v~~~ 174 (434)
+.+++.....++|+|.+... ..+...+++ +.++|.+...
T Consensus 63 ~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 63 LRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 22222111258999986654 233344555 7899998765
No 100
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=94.55 E-value=0.031 Score=45.89 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=47.6
Q ss_pred CCceeeccCCH-HhHhccCCcceEEec--CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 323 GRGKIVLQAPQ-TQVLGHFSIGVFVTH--CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 323 ~~~~v~~w~pq-~~lL~~~~v~~~I~H--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
+|+...+|++. .++++.+++.+..+. -| -+++.|++++|+|+|+.+. .....++.. +.|..+ .+ +.+
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~~--~~~ 123 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-AN--DPE 123 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT---HH
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-CC--CHH
Confidence 46677788753 356777887666553 23 4889999999999999765 122233334 888777 33 899
Q ss_pred HHHHHHHHHhcc
Q 013878 399 GVLQSLELMFSH 410 (434)
Q Consensus 399 ~l~~av~~ll~~ 410 (434)
++.++++++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 101
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=94.49 E-value=0.025 Score=54.72 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=64.2
Q ss_pred HhHhccCCcceEEecCCchhHHHHHHcCcccccCCC--cCChHHHHHHHH---HHHccEEEE-------------cCCCc
Q 013878 334 TQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPF--FGDHRMNARLVE---EVWGIGVKV-------------EGIVL 395 (434)
Q Consensus 334 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~~G~G~~l-------------~~~~~ 395 (434)
.+++..++ ++|+-.|..|+ |+..+|+|+|+ +. ..=|..||+++. .. |..-.+ -.++.
T Consensus 230 ~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccC
Confidence 46787788 99999999999 99999999998 43 346889999998 44 444222 23678
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENVRHLKEIV 426 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~ 426 (434)
|+++|.+++.+ ... +++++..+++.+.+
T Consensus 305 t~~~la~~i~~-~~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 305 TVENLLKAYKE-MDR--EKFFKKSKELREYL 332 (347)
T ss_pred CHHHHHHHHHH-HHH--HHHHHHHHHHHHHh
Confidence 99999999987 344 56777777766655
No 102
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=94.40 E-value=0.14 Score=49.28 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=57.3
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe--cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT--HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~--HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
..+++.+.+|+|+.+ ++..+++-++-+ -+.-+++.||+++|+|+|+....+ ....+. ..|..++..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~~-- 321 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDPL-- 321 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCCC--
Confidence 456777779998764 466667333222 123458999999999999865422 111122 234455433
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENVRH 421 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a~~ 421 (434)
+.+++++++.++++| ++.+.+..+
T Consensus 322 ~~~~~~~~i~~l~~~--~~~~~~~~~ 345 (365)
T cd03809 322 DPEALAAAIERLLED--PALREELRE 345 (365)
T ss_pred CHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 789999999999998 555444433
No 103
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=94.27 E-value=0.37 Score=47.33 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred ccCCHHh---HhccCCcceEEec---CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC----H
Q 013878 329 LQAPQTQ---VLGHFSIGVFVTH---CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT----K 397 (434)
Q Consensus 329 ~w~pq~~---lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~----~ 397 (434)
+++++.+ ++..++ +||.- -| -.++.||+++|+|+|+.... .....+.+. +.|..++.+..+ .
T Consensus 267 ~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 267 KMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNSDADGFQ 339 (388)
T ss_pred CCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCCcccchH
Confidence 6777654 466777 66642 23 34679999999999987643 344555555 678888655332 2
Q ss_pred HHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 398 SGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 398 ~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
++++++|.++++|. ..++.+++++
T Consensus 340 ~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 340 AELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 89999999999882 2334444443
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.26 E-value=0.22 Score=52.86 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=64.4
Q ss_pred cCCCceeeccCCH-HhHhccCCcceEEe---cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 321 TSGRGKIVLQAPQ-TQVLGHFSIGVFVT---HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 321 ~~~~~~v~~w~pq-~~lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
+.+++.+.+|.++ ..++...+ +||. +-|+ +++.||+++|+|+|+....+ ....+.+- ..|..++.+..
T Consensus 572 L~~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg-~~GlLv~~~d~ 644 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEG-VTGLTLPADTV 644 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCC-CCEEEeCCCCC
Confidence 3466777788764 35666677 5554 4554 68899999999999987532 33445554 57888887766
Q ss_pred CHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHE--GKKMRENVRHLK 423 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~--~~~~r~~a~~l~ 423 (434)
+.+++++++.+++.+- .+.+++++++..
T Consensus 645 ~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 645 TAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred ChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 7777777776665431 277777776544
No 105
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=94.17 E-value=0.12 Score=49.93 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=52.7
Q ss_pred CCceeeccCCH-HhHhccCCcceEEe--c-CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIVLQAPQ-TQVLGHFSIGVFVT--H-CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~~w~pq-~~lL~~~~v~~~I~--H-gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+|+.+.++..+ .+++..++ ++|. + .| -+++.||+++|+|+|+.. ...+...+.+. |.. ++. -+.
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~-g~~--~~~--~~~ 313 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGDS-GLI--VPI--SDP 313 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecCC-ceE--eCC--CCH
Confidence 45666665543 46777777 4444 2 22 467889999999999754 34444455443 443 333 378
Q ss_pred HHHHHHHHHHhccCcHHHHH
Q 013878 398 SGVLQSLELMFSHEGKKMRE 417 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~ 417 (434)
+++++++.+++++. +.+++
T Consensus 314 ~~~~~~i~~ll~~~-~~~~~ 332 (360)
T cd04951 314 EALANKIDEILKMS-GEERD 332 (360)
T ss_pred HHHHHHHHHHHhCC-HHHHH
Confidence 99999999998431 44444
No 106
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=94.01 E-value=0.23 Score=50.85 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCCceeeccCCHHhHhccCCcceEEe---cCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC--Cc
Q 013878 322 SGRGKIVLQAPQTQVLGHFSIGVFVT---HCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI--VL 395 (434)
Q Consensus 322 ~~~~~v~~w~pq~~lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~ 395 (434)
.+++...++.+..+++..++ +||. .=|+ .++.||+++|+|+|+.-..+. +...+++- .-|.-++.. .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccCC-CCEEEEeCCcccc
Confidence 45566668888888898888 5665 3444 588999999999999765321 23334443 467776521 12
Q ss_pred C----HHHHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 013878 396 T----KSGVLQSLELMFSHE-GKKMRENVRHLKEI 425 (434)
Q Consensus 396 ~----~~~l~~av~~ll~~~-~~~~r~~a~~l~~~ 425 (434)
+ .++|+++|.++++++ ..+|.++|.+.++.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 2 788999999999653 44566666665443
No 107
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.75 E-value=0.87 Score=37.39 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=60.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHH
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAV 121 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~ 121 (434)
+|++++-....| ...+++.|.++ ||+|++++........... .++.+..++-.. ......+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~--g~~V~ii~~~~~~~~~~~~------~~i~~~~~~~~~--------k~~~~~~ 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR--GYDVHIITPRNDYEKYEII------EGIKVIRLPSPR--------KSPLNYI 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC--CCEEEEEEcCCCchhhhHh------CCeEEEEecCCC--------CccHHHH
Confidence 367777766566 46889999999 9999999986533222211 278888885221 1112222
Q ss_pred HHHHHhcchhHHHHHHHHHhccCCCccEEEECCCc---hhHHHHHHHcC-CCeEeEc
Q 013878 122 ELLQKATPENFKKGLNAAVFETGRKISCMLTDAFL---TFSGEMARDMH-IPWLPVF 174 (434)
Q Consensus 122 ~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~---~~~~~vA~~lg-IP~v~~~ 174 (434)
. + . .+..++.+ .+||+|.+.... ..+..++...+ +|.+...
T Consensus 62 ~-~--------~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 62 K-Y--------F-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred H-H--------H-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1 1 1 22333433 379999765543 22344567788 8887543
No 108
>PHA01633 putative glycosyl transferase group 1
Probab=93.34 E-value=0.37 Score=46.50 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCceee---ccCCHH---hHhccCCcceEEec---CCc-hhHHHHHHcCcccccCCC------cCCh------HHHHHH
Q 013878 322 SGRGKIV---LQAPQT---QVLGHFSIGVFVTH---CGA-NSVCESIANGVLMICRPF------FGDH------RMNARL 379 (434)
Q Consensus 322 ~~~~~v~---~w~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~ 379 (434)
++++... +++++. ++++.++ +||.- =|+ .++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3455555 455554 4466677 67652 344 478899999999997632 3333 222322
Q ss_pred HH--HHHccEEEEcCCCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 013878 380 VE--EVWGIGVKVEGIVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEI 425 (434)
Q Consensus 380 v~--~~~G~G~~l~~~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~ 425 (434)
.. +. |.|..++ ..+++++++++++++..+ .++...++++.++.
T Consensus 278 ~~~~~~-g~g~~~~--~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~ 323 (335)
T PHA01633 278 YYDKEH-GQKWKIH--KFQIEDMANAIILAFELQDREERSMKLKELAKK 323 (335)
T ss_pred hcCccc-Cceeeec--CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHh
Confidence 22 23 6666664 469999999999985432 22334445544444
No 109
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=92.60 E-value=0.37 Score=48.22 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=54.1
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe-----cCCchhHHHHHHcCcccccCCCcCChHHHHHHHH---HHHccEEE
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT-----HCGANSVCESIANGVLMICRPFFGDHRMNARLVE---EVWGIGVK 389 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~-----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~G~~ 389 (434)
+.+++...+++|+.+ +|..++ ++|+ |-| .++.||+++|+|.|+.-..+.-. ..+. +. ..|.-
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g-~~G~l 375 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGG-PTGFL 375 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCch---heeeccCCC-CceEE
Confidence 456777789998775 455677 5554 444 37899999999999865433211 1122 23 56766
Q ss_pred EcCCCcCHHHHHHHHHHHhcc
Q 013878 390 VEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 390 l~~~~~~~~~l~~av~~ll~~ 410 (434)
.+ +++++++++.+++++
T Consensus 376 ~~----d~~~la~ai~~ll~~ 392 (419)
T cd03806 376 AS----TAEEYAEAIEKILSL 392 (419)
T ss_pred eC----CHHHHHHHHHHHHhC
Confidence 42 889999999999986
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=92.57 E-value=0.54 Score=46.18 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCceeeccCCHHhH---hccCCcceEE------ecCCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 323 GRGKIVLQAPQTQV---LGHFSIGVFV------THCGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 323 ~~~~v~~w~pq~~l---L~~~~v~~~I------~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
+|+...+++|+.++ +.+.++.++- +.++. +.+.|++++|+|+|+.++ ...+... + +..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 67888899987765 5667754432 22332 458999999999998763 1222332 3 333323
Q ss_pred CCcCHHHHHHHHHHHhcc
Q 013878 393 IVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~ 410 (434)
+ +.+++.++|++++.+
T Consensus 325 ~--d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 D--DPEEFVAAIEKALLE 340 (373)
T ss_pred C--CHHHHHHHHHHHHhc
Confidence 2 799999999997654
No 111
>PLN02275 transferase, transferring glycosyl groups
Probab=92.53 E-value=0.35 Score=47.46 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=52.1
Q ss_pred Cceee-ccCCHHhH---hccCCcceEEe-c-----CC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 324 RGKIV-LQAPQTQV---LGHFSIGVFVT-H-----CG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 324 ~~~v~-~w~pq~~l---L~~~~v~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
|+... +|+|+.++ ++.++ +||. + -| -+.+.||+++|+|+|+....+ +...+.+. +.|..++
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g-~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDG-KNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCC-CCeEEEC-
Confidence 44444 58888666 77788 5552 1 12 247999999999999975422 55566665 6898875
Q ss_pred CCcCHHHHHHHHHHHh
Q 013878 393 IVLTKSGVLQSLELMF 408 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll 408 (434)
+.++++++|.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4899999998874
No 112
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=92.22 E-value=0.79 Score=34.79 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=38.2
Q ss_pred cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHc-cEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 348 HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWG-IGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 348 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
+|-..-+.|++++|+|+|+-.. ......+.+ | -++..+ +.+++.++|+.+++|
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~----~~~el~~~i~~ll~~ 62 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN----DPEELAEKIEYLLEN 62 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC----CHHHHHHHHHHHHCC
Confidence 3445688999999999998864 333333322 4 344443 899999999999999
No 113
>PLN02949 transferase, transferring glycosyl groups
Probab=91.75 E-value=0.31 Score=49.41 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=57.3
Q ss_pred cCCCceeeccCCHHh---HhccCCcceEEe---cCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHH--HHccEEEEc
Q 013878 321 TSGRGKIVLQAPQTQ---VLGHFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEE--VWGIGVKVE 391 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~G~~l~ 391 (434)
+.+++...+++++.+ +|..++ ++|+ +=|+| ++.||+++|+|.|+....+--.+ .+.+ .-..|.-.
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC-
Confidence 456777779998765 466676 6663 23333 78999999999999875441100 0000 00124332
Q ss_pred CCCcCHHHHHHHHHHHhcc-C--cHHHHHHHHHH
Q 013878 392 GIVLTKSGVLQSLELMFSH-E--GKKMRENVRHL 422 (434)
Q Consensus 392 ~~~~~~~~l~~av~~ll~~-~--~~~~r~~a~~l 422 (434)
+ +.+++++++.+++++ + ..++++++++-
T Consensus 407 -~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~ 437 (463)
T PLN02949 407 -T--TVEEYADAILEVLRMRETERLEIAAAARKR 437 (463)
T ss_pred -C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 789999999999983 1 33455555543
No 114
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.73 E-value=1.8 Score=37.23 Aligned_cols=92 Identities=7% Similarity=0.064 Sum_probs=53.1
Q ss_pred CCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccch--HHHHHHHHHhcchhHHHHHHHHHhccCCC
Q 013878 69 PNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNR--LEAVELLQKATPENFKKGLNAAVFETGRK 146 (434)
Q Consensus 69 ~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 146 (434)
+||+|++++.... .... . |++.+.+... .+.... ..+ .++-..+.+. +.....+.++.++ +..
T Consensus 2 ~gh~v~fl~~~~~-~~~~-~-------GV~~~~y~~~--~~~~~~-~~~~~~~~e~~~~rg--~av~~a~~~L~~~-Gf~ 66 (171)
T PF12000_consen 2 RGHEVVFLTERKR-PPIP-P-------GVRVVRYRPP--RGPTPG-THPYVRDFEAAVLRG--QAVARAARQLRAQ-GFV 66 (171)
T ss_pred CCCEEEEEecCCC-CCCC-C-------CcEEEEeCCC--CCCCCC-CCcccccHHHHHHHH--HHHHHHHHHHHHc-CCC
Confidence 3999999996542 2222 2 7887776431 111000 111 1111112221 2344445555444 568
Q ss_pred ccEEEECCCchhHHHHHHHc-CCCeEeEcC
Q 013878 147 ISCMLTDAFLTFSGEMARDM-HIPWLPVFV 175 (434)
Q Consensus 147 pd~vI~D~~~~~~~~vA~~l-gIP~v~~~~ 175 (434)
||+||...-...++-+-+.+ ++|.+.++=
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 99999999888888888888 899888763
No 115
>PLN00142 sucrose synthase
Probab=91.05 E-value=2.4 Score=45.67 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=40.2
Q ss_pred eEEec---CCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHh
Q 013878 344 VFVTH---CGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMF 408 (434)
Q Consensus 344 ~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll 408 (434)
+||.- =|+| ++.||+++|+|+|+....+ ....|.+- ..|.-++.. +.++++++|.+++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG-~tG~LV~P~--D~eaLA~aI~~lL 730 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDG-VSGFHIDPY--HGDEAANKIADFF 730 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEeCCC--CHHHHHHHHHHHH
Confidence 66652 4554 8899999999999876543 33445453 468888654 6788888876644
No 116
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.56 E-value=1.1 Score=43.24 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=48.3
Q ss_pred cCCCceeeccCCHHhH---hccCCcceEEecC----Cc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcC
Q 013878 321 TSGRGKIVLQAPQTQV---LGHFSIGVFVTHC----GA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEG 392 (434)
Q Consensus 321 ~~~~~~v~~w~pq~~l---L~~~~v~~~I~Hg----G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 392 (434)
..+++.+.+++++.++ +..++ +++-+. |. +++.||+++|+|+|+....+.. ..+.. .|...+.
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~----e~~~~---~g~~~~~ 316 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR----EVLGD---KAIYFKV 316 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCccc----eeecC---CeeEecC
Confidence 3467777799998764 44455 444432 33 4789999999999987653221 11222 2333322
Q ss_pred CCcCHHHHHHHHHHHhcc
Q 013878 393 IVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 393 ~~~~~~~l~~av~~ll~~ 410 (434)
. +.+++++.+++++
T Consensus 317 ~----~~l~~~i~~l~~~ 330 (363)
T cd04955 317 G----DDLASLLEELEAD 330 (363)
T ss_pred c----hHHHHHHHHHHhC
Confidence 2 2299999999998
No 117
>PRK00654 glgA glycogen synthase; Provisional
Probab=89.71 E-value=3.8 Score=41.61 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=51.4
Q ss_pred cCCCceee-ccCCH--HhHhccCCcceEEe---cCCch-hHHHHHHcCcccccCCCcC--ChHHHHHHHHHHHccEEEEc
Q 013878 321 TSGRGKIV-LQAPQ--TQVLGHFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFG--DHRMNARLVEEVWGIGVKVE 391 (434)
Q Consensus 321 ~~~~~~v~-~w~pq--~~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~ 391 (434)
.+.++.+. +|-.. ..+++.++ +||. +-|+| +.+||+++|+|.|+.-..+ |.-.+...-.+. +.|..++
T Consensus 335 ~~~~v~~~~g~~~~~~~~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~ 411 (466)
T PRK00654 335 YPGKVGVQIGYDEALAHRIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD 411 (466)
T ss_pred CCCcEEEEEeCCHHHHHHHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC
Confidence 44555443 66322 24677777 6664 33444 7889999999999875432 211111000222 6788776
Q ss_pred CCCcCHHHHHHHHHHHhc
Q 013878 392 GIVLTKSGVLQSLELMFS 409 (434)
Q Consensus 392 ~~~~~~~~l~~av~~ll~ 409 (434)
.. +++++++++.+++.
T Consensus 412 ~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 412 DF--NAEDLLRALRRALE 427 (466)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 54 78999999999876
No 118
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=89.56 E-value=2.3 Score=41.54 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred CCceeeccC--CHH---hHhccCCcceEEecC---C-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 323 GRGKIVLQA--PQT---QVLGHFSIGVFVTHC---G-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 323 ~~~~v~~w~--pq~---~lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
+++.+.++. ++. .+++.++ +|+.-. | -.++.||+++|+|+|+....+ ....+.+- ..|..++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC--
Confidence 455556665 443 4566666 676533 3 348999999999999876533 22334443 5677654
Q ss_pred CcCHHHHHHHHHHHhccC--cHHHHHHHHH
Q 013878 394 VLTKSGVLQSLELMFSHE--GKKMRENVRH 421 (434)
Q Consensus 394 ~~~~~~l~~av~~ll~~~--~~~~r~~a~~ 421 (434)
+.++++.++.++++++ ..++.++|++
T Consensus 323 --~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 --TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred --CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4578888999999882 2334444444
No 119
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=0.47 Score=44.10 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=56.7
Q ss_pred CCCceee-ccCCHHhHhccCCcceEEecCCchhHH-HHHHcCcccccCCCcCChHHHH--HHHHHHHccEEEEcCCCcCH
Q 013878 322 SGRGKIV-LQAPQTQVLGHFSIGVFVTHCGANSVC-ESIANGVLMICRPFFGDHRMNA--RLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 322 ~~~~~v~-~w~pq~~lL~~~~v~~~I~HgG~gs~~-eal~~GvP~v~~P~~~DQ~~na--~~v~~~~G~G~~l~~~~~~~ 397 (434)
++|..+. .|-.+.++|.+.+ +.|-- +||.. .++-.|||+|.+|-.+-|+.-. .+=.+.+|+.+.+-.+ .+
T Consensus 293 kdnc~l~lsqqsfadiLH~ad--aalgm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~a 366 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAAD--AALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EA 366 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHH--HHHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--ch
Confidence 3455555 6666677776666 33322 33333 4677899999999999997554 4555555888777443 33
Q ss_pred HHHHHHHHHHhccCcHHHHHHHH
Q 013878 398 SGVLQSLELMFSHEGKKMRENVR 420 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~~a~ 420 (434)
..-..++++++.| +.+..+++
T Consensus 367 q~a~~~~q~ll~d--p~r~~air 387 (412)
T COG4370 367 QAAAQAVQELLGD--PQRLTAIR 387 (412)
T ss_pred hhHHHHHHHHhcC--hHHHHHHH
Confidence 3344445559998 66655544
No 120
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=88.65 E-value=0.26 Score=47.88 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=52.6
Q ss_pred CCceeeccC---CHHhHhccCCcceEEecCCchhHH-HHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHH
Q 013878 323 GRGKIVLQA---PQTQVLGHFSIGVFVTHCGANSVC-ESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKS 398 (434)
Q Consensus 323 ~~~~v~~w~---pq~~lL~~~~v~~~I~HgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 398 (434)
+|+.+.+-+ ....+|.+++ ++|+..| |+. ||.+.|||.|.+=..++.+.. ... |..+-+. .+.+
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~nvlv~---~~~~ 306 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG----RER-GSNVLVG---TDPE 306 (346)
T ss_dssp TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-HHH----HHT-TSEEEET---SSHH
T ss_pred CCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cceEEeC---CCHH
Confidence 477776544 4566777888 9999999 666 999999999999322332222 223 5555543 6899
Q ss_pred HHHHHHHHHhccCcHHHHHH
Q 013878 399 GVLQSLELMFSHEGKKMREN 418 (434)
Q Consensus 399 ~l~~av~~ll~~~~~~~r~~ 418 (434)
+|.+++++++.+ +...++
T Consensus 307 ~I~~ai~~~l~~--~~~~~~ 324 (346)
T PF02350_consen 307 AIIQAIEKALSD--KDFYRK 324 (346)
T ss_dssp HHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHhC--hHHHHh
Confidence 999999999986 444444
No 121
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=88.09 E-value=1 Score=45.17 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCCceeeccCCHHhHhcc-CCcceEEe---cCCchhHHHHHHcCcccccCCCcC-ChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 322 SGRGKIVLQAPQTQVLGH-FSIGVFVT---HCGANSVCESIANGVLMICRPFFG-DHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 322 ~~~~~v~~w~pq~~lL~~-~~v~~~I~---HgG~gs~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
++|..+.++.++.+-|.. ..+.+++- .+|..|++|||..|||+|++|--. =...-+..+... |+.--+-.. .
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~s--~ 417 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIADS--E 417 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-SS--H
T ss_pred hhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCCC--H
Confidence 456666677776655432 22225553 578899999999999999999422 223334455554 776333211 3
Q ss_pred HHHHHHHHHHHhcc
Q 013878 397 KSGVLQSLELMFSH 410 (434)
Q Consensus 397 ~~~l~~av~~ll~~ 410 (434)
.+=+..||+ +-+|
T Consensus 418 ~eYv~~Av~-La~D 430 (468)
T PF13844_consen 418 EEYVEIAVR-LATD 430 (468)
T ss_dssp HHHHHHHHH-HHH-
T ss_pred HHHHHHHHH-HhCC
Confidence 345666664 5455
No 122
>PLN02275 transferase, transferring glycosyl groups
Probab=87.25 E-value=17 Score=35.50 Aligned_cols=127 Identities=13% Similarity=-0.030 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCc-EEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCcc
Q 013878 37 SSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNL-KFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTES 115 (434)
Q Consensus 37 ~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh-~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~ 115 (434)
|.++.++.+++.+-.|.-.-+..++..|+++ || +|++++.+......+.. ...+++...++. +...... .
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~--~~~~v~vi~~~~~~~~~~~~----~~~~v~v~r~~~--~~~~~~~-~ 71 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQ--ASFQVDVVAYGGSEPIPALL----NHPSIHIHLMVQ--PRLLQRL-P 71 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhc--CCceEEEEEecCCCCCHHHh----cCCcEEEEECCC--ccccccc-c
Confidence 3445577777778889999999999999998 75 79999875422111111 012688877763 2111111 1
Q ss_pred chHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECC-Cch----hHHHHHHHcCCCeEeEc
Q 013878 116 NRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDA-FLT----FSGEMARDMHIPWLPVF 174 (434)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~-~~~----~~~~vA~~lgIP~v~~~ 174 (434)
.....+..+.... -.+...+.-+... ..+||+|++.. ... .+..++...++|.+..+
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~ 133 (371)
T PLN02275 72 RVLYALALLLKVA-IQFLMLLWFLCVK-IPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDW 133 (371)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 1112111111100 0111111111111 25899998742 221 23345667899998754
No 123
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=86.61 E-value=1.7 Score=43.46 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=62.2
Q ss_pred hHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEE-EcCCCcCHHHHHHHHHHHhccC--
Q 013878 335 QVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVK-VEGIVLTKSGVLQSLELMFSHE-- 411 (434)
Q Consensus 335 ~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~l~~av~~ll~~~-- 411 (434)
.++++++ ++|..= .-++.-|+..|||.+.++. |....+. +.+. |..-. .+.+.++.++|.+.+++++++.
T Consensus 323 ~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~~~~-~~~l-g~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 323 KILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--EHKSAGI-MQQL-GLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred HHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--hHHHHHH-HHHc-CCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 6677777 888633 2256678889999999985 5555444 3665 88755 6778899999999999999983
Q ss_pred -cHHHHHHHHHHHHHHHH
Q 013878 412 -GKKMRENVRHLKEIVIE 428 (434)
Q Consensus 412 -~~~~r~~a~~l~~~~~~ 428 (434)
.+++++++.++++...+
T Consensus 396 ~~~~l~~~v~~~r~~~~~ 413 (426)
T PRK10017 396 LNARLAEAVSRERQTGMQ 413 (426)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45566666666665444
No 124
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=86.57 E-value=7.4 Score=39.12 Aligned_cols=106 Identities=8% Similarity=0.080 Sum_probs=55.1
Q ss_pred CcHHHHHHHHHHHHhcCCCc--EEEEeecCC--------ccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHH
Q 013878 52 SHGLTIFNLMLKLASAAPNL--KFSFFSTKK--------SNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAV 121 (434)
Q Consensus 52 GHv~P~l~La~~L~~r~~Gh--~Vt~~t~~~--------~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~ 121 (434)
|=-.-+..|+++|+++ || +|+++|... +...... ...|++++.++.+ +..... .....
T Consensus 27 G~~~~v~~La~~L~~~--G~~~~V~v~t~~~~~~~~~~~~~~~~~~-----~~~gv~v~r~~~~-~~~~~~----~~~~~ 94 (439)
T TIGR02472 27 GQTKYVLELARALARR--SEVEQVDLVTRLIKDAKVSPDYAQPIER-----IAPGARIVRLPFG-PRRYLR----KELLW 94 (439)
T ss_pred CcchHHHHHHHHHHhC--CCCcEEEEEeccccCcCCCCccCCCeeE-----eCCCcEEEEecCC-CCCCcC----hhhhh
Confidence 4445678999999999 98 999999531 1111111 1136777776532 111100 00111
Q ss_pred HHHHHhcchhHHHHHHHHHhccCCCccEEEECCC--chhHHHHHHHcCCCeEeEc
Q 013878 122 ELLQKATPENFKKGLNAAVFETGRKISCMLTDAF--LTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 122 ~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~--~~~~~~vA~~lgIP~v~~~ 174 (434)
. .. ..+...+.+++++...+||+|-+... ...+..+++.+++|++...
T Consensus 95 ~-~~----~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 95 P-YL----DELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred h-hH----HHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 1 11 11222222233322236999987643 2344556788999987653
No 125
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=85.61 E-value=8.3 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 49 RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 49 ~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
...|=-.-+..|+++|+++ ||+|++++...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKR--GHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHT--T-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHHC--CCEEEEEEcCC
Confidence 4557778899999999999 99999997764
No 126
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=85.50 E-value=7.2 Score=34.48 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
||||+.-==+. +--=+..|.++|.+. ||+|+++++...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~--g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL--GHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT--SSEEEEEEESSST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence 35666655444 445577899999877 8999999987543
No 127
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.28 E-value=7.4 Score=40.16 Aligned_cols=75 Identities=21% Similarity=0.118 Sum_probs=48.9
Q ss_pred cCCCceeeccCCH-HhHhccCCcceEEe---cCC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 321 TSGRGKIVLQAPQ-TQVLGHFSIGVFVT---HCG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 321 ~~~~~~v~~w~pq-~~lL~~~~v~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
+.+++.+.+|..+ ..++..++ +||. .-| -+++.||+++|+|+|+.... .+...+.+- ..|..++.+
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~~-- 523 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDDA-- 523 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECCC--
Confidence 3466777777543 35577777 7765 344 46899999999999987653 344555565 678888654
Q ss_pred CHHHHHHHH
Q 013878 396 TKSGVLQSL 404 (434)
Q Consensus 396 ~~~~l~~av 404 (434)
+.+.+++++
T Consensus 524 D~~aLa~ai 532 (578)
T PRK15490 524 QTVNLDQAC 532 (578)
T ss_pred ChhhHHHHH
Confidence 344444443
No 128
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.24 E-value=24 Score=32.61 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
++|||++.-==+. |--=+..|+++|.+. | +|+++++..
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~--g-~V~VvAP~~ 41 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKI--G-RVTVVAPAE 41 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhC--C-CEEEEcCCC
Confidence 3678887765433 445578899999988 8 798887764
No 129
>PLN02846 digalactosyldiacylglycerol synthase
Probab=82.63 E-value=7.7 Score=39.23 Aligned_cols=70 Identities=10% Similarity=0.235 Sum_probs=50.4
Q ss_pred ccCCHHhHhccCCcceEEecC----CchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHH
Q 013878 329 LQAPQTQVLGHFSIGVFVTHC----GANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSL 404 (434)
Q Consensus 329 ~w~pq~~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av 404 (434)
+..+..+++...+ +||.-. =-++++||+++|+|+|+.-..+. ..+.+- +-|...+ +.+++++++
T Consensus 290 G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~~----~~~~~a~ai 357 (462)
T PLN02846 290 GRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTYD----DGKGFVRAT 357 (462)
T ss_pred CCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEecC----CHHHHHHHH
Confidence 6666677888887 888753 34688999999999998864432 333333 5554442 688999999
Q ss_pred HHHhcc
Q 013878 405 ELMFSH 410 (434)
Q Consensus 405 ~~ll~~ 410 (434)
.++|.+
T Consensus 358 ~~~l~~ 363 (462)
T PLN02846 358 LKALAE 363 (462)
T ss_pred HHHHcc
Confidence 999985
No 130
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=80.99 E-value=3.1 Score=36.44 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=45.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc-ccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHH
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS-LLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAV 121 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~-~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~ 121 (434)
++-+=..|-|-++-...|.++|.+++||++|.+-++...... ..+.. ++.+....+|-+. .
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~----~~~v~~~~~P~D~-----------~--- 84 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL----PDRVDVQYLPLDF-----------P--- 84 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-----GGG-SEEE---SS-----------H---
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC----CCCeEEEEeCccC-----------H---
Confidence 333335778999999999999999989999888776543322 22221 1123333344211 1
Q ss_pred HHHHHhcchhHHHHHHHHHhccCCCccEEE-ECCCch-hHHHHHHHcCCCeEeEcC
Q 013878 122 ELLQKATPENFKKGLNAAVFETGRKISCML-TDAFLT-FSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 122 ~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI-~D~~~~-~~~~vA~~lgIP~v~~~~ 175 (434)
...+..++.+ +||++| .+.=.+ --...|++.|||.+.+..
T Consensus 85 --------~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 --------WAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --------HHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --------HHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1233334444 677666 443332 233468889999998763
No 131
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=80.10 E-value=7.9 Score=37.50 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=22.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 47 AFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 47 ~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
..+++.+..=+-.|.++|+++ +|+++.++.+..
T Consensus 5 ~~gtr~~~~~~~pl~~~l~~~-~~~~~~~~~tg~ 37 (363)
T cd03786 5 VTGTRPEYIKLAPLIRALKKD-PGFELVLVVTGQ 37 (363)
T ss_pred EEecCHHHHHHHHHHHHHhcC-CCCCEEEEEeCC
Confidence 345555666666677788876 589999877753
No 132
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.04 E-value=22 Score=33.64 Aligned_cols=107 Identities=13% Similarity=0.019 Sum_probs=66.2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc-cccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHH
Q 013878 48 FRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS-NDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQK 126 (434)
Q Consensus 48 ~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~-~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (434)
..-.-|++=|-.|-++|.++ ||+|.+.+-+.. ..++...+ |+.+..+...- . . ....++.....+
T Consensus 7 I~n~~hvhfFk~lI~elekk--G~ev~iT~rd~~~v~~LLd~y------gf~~~~Igk~g---~-~--tl~~Kl~~~~eR 72 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKK--GHEVLITCRDFGVVTELLDLY------GFPYKSIGKHG---G-V--TLKEKLLESAER 72 (346)
T ss_pred cCCcchhhHHHHHHHHHHhC--CeEEEEEEeecCcHHHHHHHh------CCCeEeecccC---C-c--cHHHHHHHHHHH
Confidence 34445899999999999999 999877654321 12333443 77777775211 0 0 111122222222
Q ss_pred hcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCch
Q 013878 127 ATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVAM 177 (434)
Q Consensus 127 ~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~~ 177 (434)
. -.+.++..+ .+||+.+. ....-+..+|-.+|+|.+.+.-..
T Consensus 73 ~------~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 V------YKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred H------HHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 1 112333333 48999998 667788899999999999987543
No 133
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=79.83 E-value=8.4 Score=39.83 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=47.7
Q ss_pred CHHhHhccCCcceEEe-cCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHc--cEEEEcCC-----CcCHHHHHH
Q 013878 332 PQTQVLGHFSIGVFVT-HCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWG--IGVKVEGI-----VLTKSGVLQ 402 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~-HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G--~G~~l~~~-----~~~~~~l~~ 402 (434)
+..+++.-+++.++-+ +=||| +.+||+++|+|+|+....+= ..+...+... + .|+.+... .-+.++|++
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf-~~~v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGF-GCFMEEHIED-PESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcch-hhhhHHHhcc-CCCceEEEecCCccchHHHHHHHHH
Confidence 4677777777444433 45655 88999999999999876331 1222222221 2 57776421 124578888
Q ss_pred HHHHHhcc
Q 013878 403 SLELMFSH 410 (434)
Q Consensus 403 av~~ll~~ 410 (434)
++.+++..
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 88888865
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=79.35 E-value=5.3 Score=38.58 Aligned_cols=37 Identities=16% Similarity=-0.037 Sum_probs=25.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 44 AVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 44 ll~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
++.-++-+.++.--.-+-++|... |++|+++-.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~ 39 (331)
T PHA01630 3 LVRDYPDHSFVRQKKLLEEHLKML--GHKVTVFEKPTLT 39 (331)
T ss_pred EEEEccccchHHHHHHHHHHHHHh--CCeeEEEeccchh
Confidence 444556655555555667889988 9999999777543
No 135
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.20 E-value=5.9 Score=39.16 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=28.6
Q ss_pred CCeEEEEcC-CCCCcHHHHHHHHHHHHhcCC-CcEEEEe
Q 013878 40 EQHVAVLAF-RFGSHGLTIFNLMLKLASAAP-NLKFSFF 76 (434)
Q Consensus 40 ~~~Ill~~~-~~~GHv~P~l~La~~L~~r~~-Gh~Vt~~ 76 (434)
.++|++++. -+.||...--+|..+|.++++ +.+|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 358999998 677999999999999998832 2455544
No 136
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=78.60 E-value=5 Score=40.76 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=51.2
Q ss_pred cCCCceeeccCCHH---hHhccCCcceEEe---cCCch-hHHHHHHcCcccccCCCcC--ChHHHHHHHHHHHccEEEEc
Q 013878 321 TSGRGKIVLQAPQT---QVLGHFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFG--DHRMNARLVEEVWGIGVKVE 391 (434)
Q Consensus 321 ~~~~~~v~~w~pq~---~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~ 391 (434)
.+.++.+....+.. .+++.++ +||. +-|.| +.+||+++|+|.|+....+ |.-.+..--... +.|..++
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~ 420 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE 420 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC
Confidence 34555555444443 4666677 6664 23444 7789999999999876532 211111000122 5777775
Q ss_pred CCCcCHHHHHHHHHHHhc
Q 013878 392 GIVLTKSGVLQSLELMFS 409 (434)
Q Consensus 392 ~~~~~~~~l~~av~~ll~ 409 (434)
.. ++++++++|.+++.
T Consensus 421 ~~--d~~~la~~i~~~l~ 436 (473)
T TIGR02095 421 EY--DPGALLAALSRALR 436 (473)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 43 78999999999887
No 137
>PLN00142 sucrose synthase
Probab=78.31 E-value=6.9 Score=42.26 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=25.0
Q ss_pred CCCccEEEECCCc--hhHHHHHHHcCCCeEeEcC
Q 013878 144 GRKISCMLTDAFL--TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 144 ~~~pd~vI~D~~~--~~~~~vA~~lgIP~v~~~~ 175 (434)
..+||+|.+.... ..|..+|+++|||.+...=
T Consensus 406 ~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 406 QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 3579999988663 4577899999999997653
No 138
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=78.24 E-value=13 Score=37.17 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc---c---cccccCCCCCCeEEEEc--C-CCCCCCCCCCccchHHHHH
Q 013878 52 SHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS---L---LSASKSRLPDNIKVYDI--E-DGVPMKNASTESNRLEAVE 122 (434)
Q Consensus 52 GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~---~---~~~~~~~~~~gi~f~~l--~-~~~~~~~~~~~~~~~~~~~ 122 (434)
|==.-++..+++|+++++||+|+++|+...... + .+........++.++-+ . ..++...- .. ...+.
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~r-~~~~~ 90 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTY---PR-FTLLG 90 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccC---Cc-eeeHH
Confidence 555778889999999878899999998743311 0 00100011235554443 1 11211100 00 00111
Q ss_pred HHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHH-cCCCeEeEcC
Q 013878 123 LLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARD-MHIPWLPVFV 175 (434)
Q Consensus 123 ~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~-lgIP~v~~~~ 175 (434)
.+.. .+.-.++.+. +.+||++|.++....+..+++. .++|.+..+=
T Consensus 91 ~~~~----~~~~~~~~~~---~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 91 QALG----SMILGLEALL---KLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred HHHH----HHHHHHHHHH---hcCCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 1111 1111122221 1369999988866666677765 4778777654
No 139
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.49 E-value=23 Score=33.81 Aligned_cols=47 Identities=9% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC
Q 013878 50 FGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 50 ~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~ 103 (434)
..|=-.=...|+++|.++ ||+|++++........... ..++++..++
T Consensus 14 ~gG~~~~~~~la~~L~~~--g~~v~v~~~~~~~~~~~~~-----~~~i~~~~~~ 60 (363)
T cd04955 14 YGGFETFVEELAPRLVAR--GHEVTVYCRSPYPKQKETE-----YNGVRLIHIP 60 (363)
T ss_pred cCcHHHHHHHHHHHHHhc--CCCEEEEEccCCCCCcccc-----cCCceEEEcC
Confidence 344455667999999999 9999999976432221111 1278877776
No 140
>PRK00654 glgA glycogen synthase; Provisional
Probab=77.30 E-value=4.7 Score=40.94 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=28.8
Q ss_pred CeEEEEcCC------CCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAFR------FGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~~------~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|||+++++- ..|--.-.-.|+++|+++ ||+|++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~--G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAAL--GHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHC--CCcEEEEecC
Confidence 468887752 345556668999999999 9999999854
No 141
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=76.69 E-value=5.5 Score=32.99 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~ 103 (434)
|+++|++.+.++-+|-.-..-++..|..+ |++|++.-.....+.+.+.-. ..+..++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~--G~eVi~LG~~vp~e~i~~~a~---~~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA--GFEVINLGVMTSQEEFIDAAI---ETDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHH---HcCCCEEEEc
Confidence 47799999999999999999999999999 999999876543343332211 1145566665
No 142
>PRK14098 glycogen synthase; Provisional
Probab=76.21 E-value=6.6 Score=40.20 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=52.1
Q ss_pred cCCCceeeccCCHH---hHhccCCcceEEec---CCc-hhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCC
Q 013878 321 TSGRGKIVLQAPQT---QVLGHFSIGVFVTH---CGA-NSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGI 393 (434)
Q Consensus 321 ~~~~~~v~~w~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 393 (434)
.++|+.+.+.++.. .+++.++ +||.- =|. .+.+||+++|+|.|+.-..+-.........+. +.|..++..
T Consensus 360 ~~~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~~ 436 (489)
T PRK14098 360 HPEQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHDY 436 (489)
T ss_pred CCCCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCCC
Confidence 45677777777764 5677777 66642 222 26789999999888776533211100011123 677777543
Q ss_pred CcCHHHHHHHHHHHh
Q 013878 394 VLTKSGVLQSLELMF 408 (434)
Q Consensus 394 ~~~~~~l~~av~~ll 408 (434)
++++++++|.+++
T Consensus 437 --d~~~la~ai~~~l 449 (489)
T PRK14098 437 --TPEALVAKLGEAL 449 (489)
T ss_pred --CHHHHHHHHHHHH
Confidence 7899999999865
No 143
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=76.17 E-value=10 Score=38.47 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=55.3
Q ss_pred ccCCHHhH---hccCCcceEEe---cCCch-hHHHHHHcCcc----cccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 329 LQAPQTQV---LGHFSIGVFVT---HCGAN-SVCESIANGVL----MICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 329 ~w~pq~~l---L~~~~v~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+.+++.++ +.-++ +||. +=|.| +..||+++|+| +|+--+.+... +. +-|+.++.. +.
T Consensus 342 ~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-------~l-~~gllVnP~--d~ 409 (456)
T TIGR02400 342 RSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-------EL-NGALLVNPY--DI 409 (456)
T ss_pred CCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-------Hh-CCcEEECCC--CH
Confidence 44567665 44566 6664 44654 77799999999 66665554322 12 446666543 78
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 013878 398 SGVLQSLELMFSHEGKKMRENVRHLKEIVI 427 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~~r~~a~~l~~~~~ 427 (434)
+++++||.++|++..++-+++.+++.+.+.
T Consensus 410 ~~lA~aI~~aL~~~~~er~~r~~~~~~~v~ 439 (456)
T TIGR02400 410 DGMADAIARALTMPLEEREERHRAMMDKLR 439 (456)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999999998521345555555555543
No 144
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=76.02 E-value=13 Score=36.25 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=56.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc---cccccccCCCCCCeEE-EEcCCCCCCCCCCCccch
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND---SLLSASKSRLPDNIKV-YDIEDGVPMKNASTESNR 117 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~---~~~~~~~~~~~~gi~f-~~l~~~~~~~~~~~~~~~ 117 (434)
+|++ -.+++-|+.=+-.|.++|.++ ++.++.++.|..... .+.+.. ++.. +.+. +.. . ....
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~------~i~~~~~~~--~~~-~---~~~~ 67 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKKY-PEIDSYVIVTAQHREMLDQVLDLF------HLPPDYDLN--IMS-P---GQTL 67 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhhC-CCCCEEEEEeCCCHHHHHHHHHhc------CCCCCeeee--cCC-C---CCCH
Confidence 4554 456777888899999999975 367776666653221 111110 2211 1111 100 0 0111
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEE--CCCc-hhHHHHHHHcCCCeEeE
Q 013878 118 LEAVELLQKATPENFKKGLNAAVFETGRKISCMLT--DAFL-TFSGEMARDMHIPWLPV 173 (434)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~--D~~~-~~~~~vA~~lgIP~v~~ 173 (434)
.+..... + ..+.+++++ .+||+|++ |... .++..+|..+|||++.+
T Consensus 68 ~~~~~~~-------~-~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 68 GEITSNM-------L-EGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHH-------H-HHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 1211111 1 123333333 37999986 4443 55677899999999865
No 145
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=75.50 E-value=3.6 Score=39.93 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=39.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
|+|+++-..+.||+.=...+.+.|++++|+.+|++++.+.+.+-+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 379999999999999999999999999999999999987644333
No 146
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=75.39 E-value=35 Score=32.39 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 50 FGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 50 ~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
..|.-.-...|+++|.+. ||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAAR--GIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhC--CCceEEEecCCC
Confidence 668888899999999999 999999998753
No 147
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=74.89 E-value=3.7 Score=39.91 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
.++|+++-....||+.=...+.+.|++++|+.+|++++.+.+.+-+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 4489999999999999999999999999999999999998654433
No 148
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=74.81 E-value=14 Score=36.27 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=48.8
Q ss_pred CCceeecc---CCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEE-EcCCCcCHH
Q 013878 323 GRGKIVLQ---APQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVK-VEGIVLTKS 398 (434)
Q Consensus 323 ~~~~v~~w---~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~ 398 (434)
+|+.+.+- .....++.+++ ++|+..+.|- .||.+.|||.|.+- +.+ ...+. |..+. + ..+++
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v---g~~~~ 327 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV---DPDKE 327 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe---CCCHH
Confidence 45566554 44556777888 9998886555 99999999999763 322 11233 44333 3 24789
Q ss_pred HHHHHHHHHhc
Q 013878 399 GVLQSLELMFS 409 (434)
Q Consensus 399 ~l~~av~~ll~ 409 (434)
+|.++++++++
T Consensus 328 ~I~~a~~~~~~ 338 (365)
T TIGR03568 328 EIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999554
No 149
>PLN02501 digalactosyldiacylglycerol synthase
Probab=74.46 E-value=6.3 Score=41.70 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=49.5
Q ss_pred ceeeccCCHH-hHhccCCcceEEe---cCC-chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHH
Q 013878 325 GKIVLQAPQT-QVLGHFSIGVFVT---HCG-ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSG 399 (434)
Q Consensus 325 ~~v~~w~pq~-~lL~~~~v~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 399 (434)
+...++.++. +++...+ +||. .=| -.+++||+++|+|+|+.-..+... +.+ |.+-.+. -+.++
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~---~D~Ea 670 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY---KTSED 670 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec---CCHHH
Confidence 3344666654 4787777 6665 233 468889999999999987655321 222 3332232 36899
Q ss_pred HHHHHHHHhcc
Q 013878 400 VLQSLELMFSH 410 (434)
Q Consensus 400 l~~av~~ll~~ 410 (434)
++++|.++|.+
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 150
>PLN02891 IMP cyclohydrolase
Probab=73.41 E-value=14 Score=37.51 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=64.4
Q ss_pred cccccccccccCCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC
Q 013878 25 VRTATSVQEATQSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED 104 (434)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~ 104 (434)
.+.++++|.+++.. +.|.++-.+==.| ++.||+.|.+. |++ +++|..-...+... ||.+..+.+
T Consensus 8 ~~~~~~~~~~~~~~-~krALISVsDKtg----i~~fAk~L~~~--gve--IiSTgGTak~L~e~-------Gi~v~~Vsd 71 (547)
T PLN02891 8 ARAPAQPQSSPSSG-KKQALISLSDKTD----LALLANGLQEL--GYT--IVSTGGTASALEAA-------GVSVTKVEE 71 (547)
T ss_pred ccccccccCCCCcc-ccEEEEEEecccC----HHHHHHHHHHC--CCE--EEEcchHHHHHHHc-------CCceeeHHh
Confidence 35566777776655 5566665554443 68999999998 888 67776544455555 888888764
Q ss_pred --CCCCCCC-CCccchHHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCC
Q 013878 105 --GVPMKNA-STESNRLEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAF 155 (434)
Q Consensus 105 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~ 155 (434)
++|+-.. +.+...++...-++.. ....+.++++.+..-.+.|+||++..
T Consensus 72 ~TgfPEiL~GRVKTLHPkIhgGILa~--r~~~~h~~~l~~~~I~~IDlVvVNLY 123 (547)
T PLN02891 72 LTNFPEMLDGRVKTLHPAVHGGILAR--RDQEHHMEALNEHGIGTIDVVVVNLY 123 (547)
T ss_pred ccCCchhhCCcccccCchhhhhhhcC--CCCHHHHHHHHHcCCCceeeEEEecc
Confidence 5655332 2222223333222211 12233344443321157899998865
No 151
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=73.22 E-value=4.4 Score=41.11 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCceee-ccCCHH---hHhccCCcceEEec---CCc-hhHHHHHHcCcccccCCCcC--ChHHHHHHHHHHHccEEEEc
Q 013878 322 SGRGKIV-LQAPQT---QVLGHFSIGVFVTH---CGA-NSVCESIANGVLMICRPFFG--DHRMNARLVEEVWGIGVKVE 391 (434)
Q Consensus 322 ~~~~~v~-~w~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~ 391 (434)
++|+.+. ++. +. .+++.++ ++|.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+. |.|..++
T Consensus 350 ~~~v~~~~~~~-~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~ 425 (476)
T cd03791 350 PGRVAVLIGYD-EALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFE 425 (476)
T ss_pred CCcEEEEEeCC-HHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeC
Confidence 4566555 443 32 3566667 66542 122 36789999999999776533 111111000122 4788886
Q ss_pred CCCcCHHHHHHHHHHHhc
Q 013878 392 GIVLTKSGVLQSLELMFS 409 (434)
Q Consensus 392 ~~~~~~~~l~~av~~ll~ 409 (434)
.. +.+++++++++++.
T Consensus 426 ~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 426 GY--NADALLAALRRALA 441 (476)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 54 68999999999886
No 152
>PLN02846 digalactosyldiacylglycerol synthase
Probab=72.96 E-value=5.6 Score=40.21 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCC----CCcHHHHHHHHHHHHhcCCC-cEEEEeecC
Q 013878 37 SSSEQHVAVLAFRF----GSHGLTIFNLMLKLASAAPN-LKFSFFSTK 79 (434)
Q Consensus 37 ~~~~~~Ill~~~~~----~GHv~P~l~La~~L~~r~~G-h~Vt~~t~~ 79 (434)
|.+||||+|++-.. .|=..-.+.++..|+++ | |+|+++.+.
T Consensus 1 ~~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~--G~heV~vvaP~ 46 (462)
T PLN02846 1 MQKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD--GDREVTLVIPW 46 (462)
T ss_pred CCCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc--CCcEEEEEecC
Confidence 34688999998633 34436667788899999 9 899999874
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=72.78 E-value=21 Score=33.19 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=49.9
Q ss_pred CCceeeccCCH---HhHhccCCcceEEec---CCchh-HHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCc
Q 013878 323 GRGKIVLQAPQ---TQVLGHFSIGVFVTH---CGANS-VCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVL 395 (434)
Q Consensus 323 ~~~~v~~w~pq---~~lL~~~~v~~~I~H---gG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 395 (434)
+++...+|+++ ..++..++ +++.. .|.|. +.||+++|+|+|.... ......+.+. +.|. +....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~~~- 327 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVPPG- 327 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecCCC-
Confidence 45555688883 34555565 56554 46544 5999999999976654 3222233332 2466 32222
Q ss_pred CHHHHHHHHHHHhcc
Q 013878 396 TKSGVLQSLELMFSH 410 (434)
Q Consensus 396 ~~~~l~~av~~ll~~ 410 (434)
+.+++.+++.+++++
T Consensus 328 ~~~~~~~~i~~~~~~ 342 (381)
T COG0438 328 DVEELADALEQLLED 342 (381)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999999999988
No 154
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=71.89 E-value=4.4 Score=38.82 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=39.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
|||+++-....||+.=...+.+.|++++|+.+||+++.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 4899999999999999999999999999999999999886443
No 155
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=70.30 E-value=7.4 Score=38.28 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=24.1
Q ss_pred EEEcC-CCCCcHHHHHHHHHHHHhc-CCCcEEEEe
Q 013878 44 AVLAF-RFGSHGLTIFNLMLKLASA-APNLKFSFF 76 (434)
Q Consensus 44 ll~~~-~~~GHv~P~l~La~~L~~r-~~Gh~Vt~~ 76 (434)
++++. -+.||...--+|.++|.++ +++.+|+++
T Consensus 2 lils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 2 LILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 34444 7779999999999999875 234666664
No 156
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=70.22 E-value=89 Score=28.68 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
|||+.-==+. |--=+..|.++|++. | +|+++++...
T Consensus 2 ~ILltNDDGi-~a~Gi~aL~~~l~~~--g-~V~VvAP~~~ 37 (244)
T TIGR00087 2 KILLTNDDGI-HSPGIRALYQALKEL--G-EVTVVAPARQ 37 (244)
T ss_pred eEEEECCCCC-CCHhHHHHHHHHHhC--C-CEEEEeCCCC
Confidence 4554433222 334467899999988 8 8988887653
No 157
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=69.00 E-value=5.7 Score=38.05 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=29.6
Q ss_pred EEEEcC--CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 43 VAVLAF--RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 43 Ill~~~--~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|+++.. ...|+......|+++|.++ ||+|++++...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAK--GHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccC--CceEEEEEEeC
Confidence 455544 4589999999999999999 99999998643
No 158
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=68.11 E-value=71 Score=27.47 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=24.8
Q ss_pred EEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 45 VLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 45 l~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
++..++.||..=|+.|.+.+......++..++|..+
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 445677899999999999992221146666666554
No 159
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=68.08 E-value=5.5 Score=41.03 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=57.5
Q ss_pred CCceeeccCCH---HhHhccCCcceEEecC---CchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 323 GRGKIVLQAPQ---TQVLGHFSIGVFVTHC---GANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 323 ~~~~v~~w~pq---~~lL~~~~v~~~I~Hg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
.++.+.++... ..++.+.+ ++|.=+ |.++..||+.+|+|+| .......|.+. .=|.-+ -+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li----~d 474 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII----DD 474 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe----CC
Confidence 45555577663 35566666 777644 7789999999999999 22223344443 445555 37
Q ss_pred HHHHHHHHHHHhccC--cHHHHHHHHHHHHH
Q 013878 397 KSGVLQSLELMFSHE--GKKMRENVRHLKEI 425 (434)
Q Consensus 397 ~~~l~~av~~ll~~~--~~~~r~~a~~l~~~ 425 (434)
..+|++||..+|.+- ...+...|-+.++.
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 799999999999982 33444444444433
No 160
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.83 E-value=8.8 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCchhHHHHHHcCcccccCCCcCChHHHHH-HHHHHHccEEEEcCCCcCHHHHHHHHH
Q 013878 349 CGANSVCESIANGVLMICRPFFGDHRMNAR-LVEEVWGIGVKVEGIVLTKSGVLQSLE 405 (434)
Q Consensus 349 gG~gs~~eal~~GvP~v~~P~~~DQ~~na~-~v~~~~G~G~~l~~~~~~~~~l~~av~ 405 (434)
.|..|.++.|..|||||.+|.------.|. .+... |+|--+-+ -..|-...||+
T Consensus 846 nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak--~~eEY~~iaV~ 900 (966)
T KOG4626|consen 846 NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK--NREEYVQIAVR 900 (966)
T ss_pred CCcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh--hHHHHHHHHHH
Confidence 468899999999999999996332233333 33444 88864322 12333444554
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=67.78 E-value=19 Score=30.70 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=41.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED 104 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~ 104 (434)
++|.+.-.|+.|-..-...++..|.+. |++|-=+-++.-++.=.+. |++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~-------GF~Ivdl~t 60 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRI-------GFKIVDLAT 60 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEe-------eeEEEEccC
Confidence 478888889999999999999999999 9999544444334332233 788888763
No 162
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=67.77 E-value=7.9 Score=31.56 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
+||++...++.+=.. ...+.++|.++ |++|+++.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~--g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA--GWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT--TSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC--CCEEEEEECCcH
Confidence 478999898876666 99999999999 999999999853
No 163
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=67.45 E-value=6.3 Score=37.63 Aligned_cols=45 Identities=7% Similarity=0.139 Sum_probs=39.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLL 86 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~ 86 (434)
+|+++-....||+.=...+.++|++++|+.+|++++.+.+.+-++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 589999999999999999999999999999999999986544333
No 164
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=67.10 E-value=7.3 Score=38.15 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=23.7
Q ss_pred CccEEEE--CCCc-hhHHHHHHHcCCCeEeEcCc
Q 013878 146 KISCMLT--DAFL-TFSGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 146 ~pd~vI~--D~~~-~~~~~vA~~lgIP~v~~~~~ 176 (434)
+||+||+ |.+. ..+..+|..+|||++.+.-.
T Consensus 93 ~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 93 KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 7998884 6664 56677899999999976544
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=67.07 E-value=1.1e+02 Score=28.35 Aligned_cols=35 Identities=14% Similarity=-0.040 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|||+.-==+. |--=+..|.++|++ +|+|+++++..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~---~~~V~VvAP~~ 36 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE---KHEVFVVAPDK 36 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh---CCcEEEEccCC
Confidence 5555544332 33346788888864 57999988764
No 166
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=66.98 E-value=66 Score=32.48 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 55 LTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 55 ~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
.-.-.|+++|+++ ||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~--G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKL--GHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHC--CCeEEEEecC
Confidence 3345699999999 9999999854
No 167
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=66.89 E-value=9.2 Score=30.53 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeec
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFST 78 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~ 78 (434)
+|++.+.++-.|.....-++..|.++ |++|.+.-.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~--G~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA--GFEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC--CCEEEECCC
Confidence 48999999999999999999999999 999977654
No 168
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.44 E-value=56 Score=31.35 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=35.5
Q ss_pred CeEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 41 QHVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 41 ~~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
+||++++. ++-|-..---++|..|++. |.+|.++++++.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCC
Confidence 38999999 9999999999999999999 9889999888754
No 169
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=66.05 E-value=28 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeecCCcccccccc
Q 013878 57 IFNLMLKLASAAPNLKFSFFSTKKSNDSLLSA 88 (434)
Q Consensus 57 ~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~ 88 (434)
++.+++.|.+. |++| ++|+.-...+++.
T Consensus 2 ~~~~~~~l~~l--G~~i--~AT~gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAEL--GFEL--VATGGTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHC--CCEE--EEccHHHHHHHHC
Confidence 46899999999 9996 4555434444444
No 170
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=66.03 E-value=17 Score=35.45 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 49 RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 49 ~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
...|=..-...|++.|.+. ||+|++++...
T Consensus 10 ~~GGv~~~~~~l~~~l~~~--g~~v~~~~~~~ 39 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDL--GVDTRWEVIKG 39 (372)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCCceEEecCC
Confidence 5667777788999999999 99999998643
No 171
>PRK10125 putative glycosyl transferase; Provisional
Probab=65.79 E-value=12 Score=37.33 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=40.9
Q ss_pred hHhccCCcceEEec----CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHH
Q 013878 335 QVLGHFSIGVFVTH----CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLE 405 (434)
Q Consensus 335 ~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~ 405 (434)
++++.++ +||.- |--.++.||+++|+|+|+....+ -++ +.+. +.|..++.+ +.++|+++++
T Consensus 302 ~~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~E----iv~~-~~G~lv~~~--d~~~La~~~~ 366 (405)
T PRK10125 302 SALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA-ARE----VLQK-SGGKTVSEE--EVLQLAQLSK 366 (405)
T ss_pred HHHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC-hHH----hEeC-CcEEEECCC--CHHHHHhccC
Confidence 3444566 66652 33468889999999999998755 222 3344 678888765 6778887554
No 172
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=65.52 E-value=8.7 Score=29.39 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHHhcchhHHHHH
Q 013878 57 IFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQKATPENFKKGL 136 (434)
Q Consensus 57 ~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (434)
++.+|+.|++. ||+ +++|+.-...+.+. |+....+..-...+ +....+. .+
T Consensus 2 ~~~~a~~l~~l--G~~--i~AT~gTa~~L~~~-------Gi~~~~v~~~~~~~-~~~~g~~-----------------~i 52 (95)
T PF02142_consen 2 IVPLAKRLAEL--GFE--IYATEGTAKFLKEH-------GIEVTEVVNKIGEG-ESPDGRV-----------------QI 52 (95)
T ss_dssp HHHHHHHHHHT--TSE--EEEEHHHHHHHHHT-------T--EEECCEEHSTG--GGTHCH-----------------HH
T ss_pred HHHHHHHHHHC--CCE--EEEChHHHHHHHHc-------CCCceeeeeecccC-ccCCchh-----------------HH
Confidence 57899999999 987 66776544455555 78866664211110 0000011 22
Q ss_pred HHHHhccCCCccEEEECCCchh---------HHHHHHHcCCCeE
Q 013878 137 NAAVFETGRKISCMLTDAFLTF---------SGEMARDMHIPWL 171 (434)
Q Consensus 137 ~~l~~~~~~~pd~vI~D~~~~~---------~~~vA~~lgIP~v 171 (434)
.++++. .+.|+||...--.- -..+|..++||++
T Consensus 53 ~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 53 MDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 223333 48999997644211 2457888999875
No 173
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=64.25 E-value=25 Score=33.38 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCceee-ccCC---HHhHhccCCcceEEec--CCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 323 GRGKIV-LQAP---QTQVLGHFSIGVFVTH--CGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 323 ~~~~v~-~w~p---q~~lL~~~~v~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
++..+. ..+| +.++|++++++.|+|+ =|.|++.-.+..|||.++- .+-++|.... +. |+-+-.+.+.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e~-gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-EQ-GLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-hC-CCeEEecCCccc
Confidence 566655 5555 6788999999999985 5899999999999999975 3455665533 33 777766788899
Q ss_pred HHHHHHHHHHHhc-c-C-----cHHHHHHHHHHHHHHHHHhCC
Q 013878 397 KSGVLQSLELMFS-H-E-----GKKMRENVRHLKEIVIEAAGP 432 (434)
Q Consensus 397 ~~~l~~av~~ll~-~-~-----~~~~r~~a~~l~~~~~~a~~~ 432 (434)
...++++=+++.. | + .|.| .+.+++.++.+.++
T Consensus 281 ~~~v~e~~rql~~~dk~~I~Ff~pn~---~~~W~~~l~~~~g~ 320 (322)
T PRK02797 281 EDIVREAQRQLASVDKNIIAFFSPNY---LQGWRNALAIAAGE 320 (322)
T ss_pred HHHHHHHHHHHHhhCcceeeecCHhH---HHHHHHHHHHhhCC
Confidence 9999888665433 2 1 1333 34556666665554
No 174
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=63.25 E-value=8.3 Score=35.98 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=38.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
+|+++-..+.||+.=+..+.++|++++|+.+|++++.+...+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 58999999999999999999999999899999999998644433
No 175
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=61.03 E-value=1.4e+02 Score=27.60 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 57 IFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 57 ~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
+..|+++|++ +|+|+++++...
T Consensus 16 l~aL~~~l~~---~~~V~VvAP~~~ 37 (253)
T PRK13933 16 INTLAELLSK---YHEVIIVAPENQ 37 (253)
T ss_pred HHHHHHHHHh---CCcEEEEccCCC
Confidence 7788999964 579999877653
No 176
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=60.71 E-value=33 Score=32.60 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=28.7
Q ss_pred EEEEcC--C-CCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 43 VAVLAF--R-FGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 43 Ill~~~--~-~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|++++. | ..|--.=...|+++|.++ ||+|++++...
T Consensus 2 I~~v~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~ 40 (366)
T cd03822 2 IALVSPYPPRKCGIATFTTDLVNALSAR--GPDVLVVSVAA 40 (366)
T ss_pred eEEecCCCCCCCcHHHHHHHHHHHhhhc--CCeEEEEEeec
Confidence 566554 3 457778889999999999 99999998764
No 177
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=60.09 E-value=8.6 Score=37.97 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=26.5
Q ss_pred cC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 47 AF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 47 ~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|+ |-.|+-.-..+|.++|+++ |+|+++|...
T Consensus 9 P~P~~~G~~~r~~~~~~~L~~~---~~v~l~~~~~ 40 (397)
T TIGR03087 9 PYPPNKGDKIRSFHLLRHLAAR---HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCcEeHHHHHHHHHhc---CcEEEEEeCC
Confidence 44 6679999999999999876 9999999864
No 178
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=59.80 E-value=1.3e+02 Score=27.67 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
+|++.-==+. |--=+-.|+++|. . +++|+++++...+
T Consensus 2 rILlTNDDGi-~a~Gi~aL~~al~-~--~~dV~VVAP~~~q 38 (252)
T COG0496 2 RILLTNDDGI-HAPGIRALARALR-E--GADVTVVAPDREQ 38 (252)
T ss_pred eEEEecCCcc-CCHHHHHHHHHHh-h--CCCEEEEccCCCC
Confidence 3444433222 4444667888888 7 8999999987543
No 179
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=58.56 E-value=80 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=24.3
Q ss_pred HhHhccCCcceEEe--cCCchhHHH----HHHcCcccccC
Q 013878 334 TQVLGHFSIGVFVT--HCGANSVCE----SIANGVLMICR 367 (434)
Q Consensus 334 ~~lL~~~~v~~~I~--HgG~gs~~e----al~~GvP~v~~ 367 (434)
..++.+-.+.++|| -||.|++.| |...|+|+|++
T Consensus 190 ~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred HHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEE
Confidence 46777788889998 677766654 55667777754
No 180
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=58.30 E-value=10 Score=36.59 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=67.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeE-EEEcCCCCCCCCCCCccchHHH
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIK-VYDIEDGVPMKNASTESNRLEA 120 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~-f~~l~~~~~~~~~~~~~~~~~~ 120 (434)
||+++-..+.||+.=...+.+.|++++|+.+|++++.+.+.+-++.. +.|. +..++... . . .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------p~vd~vi~~~~~~--~--~--~~~~~- 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN------PDINALYGLDRKK--A--K--AGERK- 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC------CCccEEEEeChhh--h--c--chHHH-
Confidence 58999999999999999999999999999999999998654333332 1443 33333110 0 0 00000
Q ss_pred HHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 121 VELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
+. ...+.+.++.+ .++|++|.=....-...++...|+|.-+-+
T Consensus 68 ---~~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 68 ---LA-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred ---HH-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 00 11122333322 479988854444455677888898865543
No 181
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=58.28 E-value=15 Score=37.15 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.9
Q ss_pred ccCCHHhH---hccCCcceEEe---cCCch-hHHHHHHcCcc----cccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 329 LQAPQTQV---LGHFSIGVFVT---HCGAN-SVCESIANGVL----MICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 329 ~w~pq~~l---L~~~~v~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+++++.++ +..++ +||. .-|+| ++.||+++|+| +|+--..+--.. . .-|..++.. +.
T Consensus 347 g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~-~~g~lv~p~--d~ 414 (460)
T cd03788 347 RSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------L-SGALLVNPY--DI 414 (460)
T ss_pred CCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------c-CCCEEECCC--CH
Confidence 67787766 55566 5553 45654 66899999999 554433221111 2 346666543 78
Q ss_pred HHHHHHHHHHhcc
Q 013878 398 SGVLQSLELMFSH 410 (434)
Q Consensus 398 ~~l~~av~~ll~~ 410 (434)
++++++|.+++++
T Consensus 415 ~~la~ai~~~l~~ 427 (460)
T cd03788 415 DEVADAIHRALTM 427 (460)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999986
No 182
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=58.27 E-value=18 Score=29.13 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=25.0
Q ss_pred eEEEEcCCCCC---cHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGS---HGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~G---Hv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+|+|+--|-.+ .-.-.++|+.+.++| ||+|.++...+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~R--Ghev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRR--GHEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHT--T-EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHC--CCEEEEEEcCc
Confidence 56666666543 224578999999999 99999998764
No 183
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=57.72 E-value=75 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred CeEEEEcC--CCCCcH-HHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 41 QHVAVLAF--RFGSHG-LTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 41 ~~Ill~~~--~~~GHv-~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|+|+++.. +..|=+ .=++.|+++|.+++.||+|++++...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 46777766 232444 56688999999885568998887653
No 184
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.40 E-value=11 Score=36.21 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=37.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
||+++-..+.||+.=...+.+.|++.+|+.+|++++.+.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~ 40 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWC 40 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhh
Confidence 5899999999999999999999999999999999998754
No 185
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.98 E-value=17 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+++||++.+.+..||=.-.--+++.|+.. |++|......
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~--GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA--GFEVINLGLF 49 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC--CceEEecCCc
Confidence 58899999999999999999999999999 9999776543
No 186
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=56.72 E-value=1.1e+02 Score=28.56 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 49 RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 49 ~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
...|.-.....|+++|.+. ||+|.+++...
T Consensus 10 ~~gG~~~~~~~l~~~l~~~--~~~v~~~~~~~ 39 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRD--RFEHVVISLTD 39 (365)
T ss_pred cCccHHHHHHHHHHHhhhc--cceEEEEecCc
Confidence 5589999999999999998 99999998653
No 187
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=55.07 E-value=23 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEe
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFF 76 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~ 76 (434)
-++++..+...|..-+-.||+.|.++ |+.|..+
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~--G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQ--GYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhC--CCEEEEE
Confidence 69999999999999999999999999 9997654
No 188
>PRK05595 replicative DNA helicase; Provisional
Probab=54.68 E-value=50 Score=33.32 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=32.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|=..=.+.+|..++ +. |+.|.|++.+-..+++
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l 245 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHH
Confidence 344555699999999999999876 56 8999999988544333
No 189
>PLN02316 synthase/transferase
Probab=54.36 E-value=45 Score=37.33 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCCceeeccCCHH---hHhccCCcceEEec---CC-chhHHHHHHcCcccccCCCcC--ChHHH-------HHHHHHHHc
Q 013878 322 SGRGKIVLQAPQT---QVLGHFSIGVFVTH---CG-ANSVCESIANGVLMICRPFFG--DHRMN-------ARLVEEVWG 385 (434)
Q Consensus 322 ~~~~~v~~w~pq~---~lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G 385 (434)
++++.+....+.. .+++.++ +||.- =| -.+.+||+++|+|.|+.-..+ |.-.. +...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 3455554333332 4666667 77742 12 248899999999888765432 22111 1000012 4
Q ss_pred cEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 386 IGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 386 ~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
.|..++. -+++.|..+|.+++.+
T Consensus 976 tGflf~~--~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSFDG--ADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEeCC--CCHHHHHHHHHHHHhh
Confidence 5777654 3788999999999875
No 190
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=54.26 E-value=20 Score=31.59 Aligned_cols=38 Identities=5% Similarity=-0.034 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCCcHHH-HHHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLT-IFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P-~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.++|++.-.++. ...- .+.|.++|.++ ||+|+++.|+.
T Consensus 5 ~k~IllgVTGsi-aa~k~a~~lir~L~k~--G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGLTGSH-CTYDEVMPEIEKLVDE--GAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEEcCHH-HHHHHHHHHHHHHHhC--cCEEEEEECHh
Confidence 558888888876 4555 69999999999 99999999885
No 191
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=54.18 E-value=1.5e+02 Score=26.01 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=44.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc-ccccccccCCCCCCeEEEEcCCCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN-DSLLSASKSRLPDNIKVYDIEDGV 106 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~gi~f~~l~~~~ 106 (434)
+-.|.+++..+.|-....+.+|.+.+.+ |++|.++=.-... ..=+....... .++++.....++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~ 86 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGF 86 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCC
Confidence 4489999999999999999999999998 9999988544321 00000000111 278888877543
No 192
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.64 E-value=30 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|+++.+.+..-|-.-+..|+..|.++ ||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~--G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKA--GHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHT--TBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHC--CCeEEEECCC
Confidence 78999999999999999999999999 9999988443
No 193
>PLN02939 transferase, transferring glycosyl groups
Probab=52.89 E-value=44 Score=36.89 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCCceeeccCCHH---hHhccCCcceEEec-----CCchhHHHHHHcCcccccCCCcC--ChHHH--HHHH-HHHHccEE
Q 013878 322 SGRGKIVLQAPQT---QVLGHFSIGVFVTH-----CGANSVCESIANGVLMICRPFFG--DHRMN--ARLV-EEVWGIGV 388 (434)
Q Consensus 322 ~~~~~v~~w~pq~---~lL~~~~v~~~I~H-----gG~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v-~~~~G~G~ 388 (434)
.+++...++.+.. .+++.++ +||.- || .+.+||+++|+|.|+....+ |--.+ ...+ .+- +-|.
T Consensus 836 ~drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfG-LvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGf 911 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCG-LTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGF 911 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCc-HHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceE
Confidence 3456666777654 4677777 77752 33 37899999999999876544 21111 1111 112 4676
Q ss_pred EEcCCCcCHHHHHHHHHHHhc
Q 013878 389 KVEGIVLTKSGVLQSLELMFS 409 (434)
Q Consensus 389 ~l~~~~~~~~~l~~av~~ll~ 409 (434)
.++. -+++.+++++.+++.
T Consensus 912 Lf~~--~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 912 TFLT--PDEQGLNSALERAFN 930 (977)
T ss_pred EecC--CCHHHHHHHHHHHHH
Confidence 6654 378889999988764
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.27 E-value=1.5e+02 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEe
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFF 76 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~ 76 (434)
.-|.+++..+.|-..-.+.+|.+.+.+ |++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEE
Confidence 368888899999999999999999998 9999665
No 195
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=50.47 E-value=25 Score=35.73 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=28.0
Q ss_pred CeEEEEcC---C---CCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAF---R---FGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~---~---~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|||+++++ | ..|=-.-.-.|+++|+++ ||+|++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~--G~~v~v~~p~ 43 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAAL--GHDVRVLLPA 43 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHc--CCeEEEEecC
Confidence 46888875 2 334445567899999999 9999999854
No 196
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=50.19 E-value=39 Score=34.04 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=58.5
Q ss_pred CCceee-ccCC--HHhHhccCCcceEEecCC--chhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCH
Q 013878 323 GRGKIV-LQAP--QTQVLGHFSIGVFVTHCG--ANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTK 397 (434)
Q Consensus 323 ~~~~v~-~w~p--q~~lL~~~~v~~~I~HgG--~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 397 (434)
+|+.+. +..+ -.+++..+++-+-++|+. ..++.||+.+|+|++..=...... ..+.. |--+.. -+.
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~--~~~ 398 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEH--NEV 398 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecC--CCH
Confidence 566666 6666 357888899878888877 578999999999999765332111 11111 333333 367
Q ss_pred HHHHHHHHHHhccCcHH-HHHHHH
Q 013878 398 SGVLQSLELMFSHEGKK-MRENVR 420 (434)
Q Consensus 398 ~~l~~av~~ll~~~~~~-~r~~a~ 420 (434)
+++.++|+++|.+ ++ ++++..
T Consensus 399 ~~m~~~i~~lL~d--~~~~~~~~~ 420 (438)
T TIGR02919 399 DQLISKLKDLLND--PNQFRELLE 420 (438)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHH
Confidence 9999999999998 64 444333
No 197
>PRK06321 replicative DNA helicase; Provisional
Probab=49.49 E-value=1.2e+02 Score=30.93 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+++|...+ +. |..|.|+|.+-....+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~--g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQN--RLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHH
Confidence 355566699999999999999987 45 8899999988544433
No 198
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=38 Score=34.81 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCceeeccCCHHhHhcc---CCcceEEe---cCCchhHHHHHHcCcccccCCCcCChHH--HHHHHHHHHccEEEEcCCC
Q 013878 323 GRGKIVLQAPQTQVLGH---FSIGVFVT---HCGANSVCESIANGVLMICRPFFGDHRM--NARLVEEVWGIGVKVEGIV 394 (434)
Q Consensus 323 ~~~~v~~w~pq~~lL~~---~~v~~~I~---HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~ 394 (434)
+|.++.+-.|..+-++. ++ +|+- =||..|+.|+|-.|||+|+++ ++||- |+.-+....|+--.+ -.
T Consensus 489 eRL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v--A~ 562 (620)
T COG3914 489 ERLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV--AD 562 (620)
T ss_pred hheeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh--cC
Confidence 44444455555444332 34 5554 589999999999999999996 88875 333343331332222 11
Q ss_pred cCHHHHHHHHH
Q 013878 395 LTKSGVLQSLE 405 (434)
Q Consensus 395 ~~~~~l~~av~ 405 (434)
-.++-+++||+
T Consensus 563 s~~dYV~~av~ 573 (620)
T COG3914 563 SRADYVEKAVA 573 (620)
T ss_pred CHHHHHHHHHH
Confidence 23445566653
No 199
>PTZ00445 p36-lilke protein; Provisional
Probab=48.89 E-value=73 Score=28.51 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.0
Q ss_pred CcHHH-HHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 52 SHGLT-IFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 52 GHv~P-~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
+|+.| +..|.++|.++ |..|+++|..+.
T Consensus 74 ~~~tpefk~~~~~l~~~--~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNS--NIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHC--CCeEEEEEccch
Confidence 46677 89999999999 999999998753
No 200
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=48.51 E-value=2.3e+02 Score=26.33 Aligned_cols=101 Identities=8% Similarity=0.011 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhc-CCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHHhcchhHHH
Q 013878 56 TIFNLMLKLASA-APNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQKATPENFKK 134 (434)
Q Consensus 56 P~l~La~~L~~r-~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (434)
=+..|+++|.+. .+|++|+++++...+. -...+.. ....+++..+.++ .......|.+- +.=
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS-g~ghaiT-~~~pl~~~~~~~~----~yav~GTPaDC-----------V~l 77 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQS-GVGHCIS-YTHPMMIAELGPR----RFAAEGSPADC-----------VLA 77 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCC-CCccccc-CCCCeEEEEeCCC----eEEEcCchHHH-----------HHH
Confidence 356677777662 2258999988775332 1122111 1123555544321 11111222221 111
Q ss_pred HHHHHHhccCCCccEEEEC----------CCch---hHHHHHHHcCCCeEeEcC
Q 013878 135 GLNAAVFETGRKISCMLTD----------AFLT---FSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 135 ~l~~l~~~~~~~pd~vI~D----------~~~~---~~~~vA~~lgIP~v~~~~ 175 (434)
.+..++.. .+||+||+- .+.. .+..-|..+|||.+.++.
T Consensus 78 al~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 78 ALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 12222211 378999874 3322 244456679999999986
No 201
>PRK04940 hypothetical protein; Provisional
Probab=47.93 E-value=47 Score=28.90 Aligned_cols=31 Identities=3% Similarity=-0.178 Sum_probs=25.9
Q ss_pred CccEEEECCC-chhHHHHHHHcCCCeEeEcCc
Q 013878 146 KISCMLTDAF-LTFSGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 146 ~pd~vI~D~~-~~~~~~vA~~lgIP~v~~~~~ 176 (434)
++.+||..++ -+||.-+|+++|+|.|.+.+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 4678887666 599999999999999999764
No 202
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=46.75 E-value=62 Score=31.25 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCceee-ccCC---HHhHhccCCcceEEe--cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcC
Q 013878 323 GRGKIV-LQAP---QTQVLGHFSIGVFVT--HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLT 396 (434)
Q Consensus 323 ~~~~v~-~w~p---q~~lL~~~~v~~~I~--HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 396 (434)
++..+. +.+| +.++|+.++++.|.| .=|.|++.-.|..|||++.- .+-++|-. +.+. |+-+-...+.++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~-l~~~-~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQD-LKEQ-GIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHH-HHhC-CCeEEeccccCC
Confidence 455554 6666 567889999988888 56899999999999999864 34455444 4454 777777778999
Q ss_pred HHHHHHHHHHHhc
Q 013878 397 KSGVLQSLELMFS 409 (434)
Q Consensus 397 ~~~l~~av~~ll~ 409 (434)
...|++|=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888876
No 203
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=46.60 E-value=48 Score=29.04 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHhccCCCccEEEECCC-chhHHHHHHHcCCCeEeEcCc
Q 013878 136 LNAAVFETGRKISCMLTDAF-LTFSGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 136 l~~l~~~~~~~pd~vI~D~~-~~~~~~vA~~lgIP~v~~~~~ 176 (434)
+++++++......++|..++ .+++..+|+++|+|.|.+.+.
T Consensus 49 l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 49 LEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 34444443222357776666 578889999999999888764
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=46.23 E-value=21 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccccc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSA 88 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~ 88 (434)
...++++-.|+.|-.+=..++|.+|.++ |+.|+|++.+.....+..+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHH
Confidence 3479999999999999999999999988 9999999998766655543
No 205
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=46.03 E-value=1e+02 Score=24.34 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=51.7
Q ss_pred EEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHH
Q 013878 45 VLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELL 124 (434)
Q Consensus 45 l~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (434)
+++.... +=.=++.+++.|.+. |++| ++++.....+... |+.+..+.. ... ... .+.
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~--G~~i--~aT~gTa~~L~~~-------gi~~~~v~~-~~~-~~~--~~~------- 60 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKL--GYKL--YATEGTADFLLEN-------GIPVTPVAW-PSE-EPQ--NDK------- 60 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHC--CCEE--EEccHHHHHHHHc-------CCCceEeee-ccC-CCC--CCc-------
Confidence 4444433 555688999999999 9996 4555434444444 565544421 000 000 000
Q ss_pred HHhcchhHHHHHHHHHhccCCCccEEEECCC---------chhHHHHHHHcCCCeE
Q 013878 125 QKATPENFKKGLNAAVFETGRKISCMLTDAF---------LTFSGEMARDMHIPWL 171 (434)
Q Consensus 125 ~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~---------~~~~~~vA~~lgIP~v 171 (434)
+.+.+. +.+ .++|+||.-.. .+.-...|-++|||++
T Consensus 61 -----~~i~~~----i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 -----PSLREL----LAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred -----hhHHHH----HHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 112222 222 47899998432 2445677899999996
No 206
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=45.19 E-value=67 Score=30.67 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCCCcCChHHHH---HHHHHHHccEEEEc
Q 013878 331 APQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRPFFGDHRMNA---RLVEEVWGIGVKVE 391 (434)
Q Consensus 331 ~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na---~~v~~~~G~G~~l~ 391 (434)
-|+...|+.++ .+|||-=-.+-+.||+..|+|+.++|.-.-..-.. ..+.+. |.-..+.
T Consensus 220 nPy~~~La~ad-~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 220 NPYLGFLAAAD-AIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred CcHHHHHHhCC-EEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEECC
Confidence 37888999888 25666666788999999999999999866222222 234444 6655553
No 207
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=45.10 E-value=34 Score=29.16 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=21.9
Q ss_pred cceEEecCCch------hHHHHHHcCcccccCC
Q 013878 342 IGVFVTHCGAN------SVCESIANGVLMICRP 368 (434)
Q Consensus 342 v~~~I~HgG~g------s~~eal~~GvP~v~~P 368 (434)
.+++++|+|-| ++.||...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34888888855 6679999999999985
No 208
>PHA02754 hypothetical protein; Provisional
Probab=45.06 E-value=34 Score=23.26 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENVRHLKEIVIEAA 430 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~a~ 430 (434)
++++|.++ +.+ +.|++..+++++.+.+++
T Consensus 3 kAeEi~k~----i~e--K~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 3 KAEEIPKA----IME--KDFKEAMRELKDILSEAG 31 (67)
T ss_pred cHHHHHHH----HHH--hHHHHHHHHHHHHHhhCc
Confidence 34555544 445 789999999999998876
No 209
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=44.91 E-value=2.6e+02 Score=26.01 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
||++.-==+. |--=+..|+++|.+. | +|+++++..
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~--g-~V~VvAP~~ 36 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPL--G-EVDVVAPET 36 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhC--C-cEEEEccCC
Confidence 4555444333 445578899999988 7 799887764
No 210
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=44.89 E-value=1.3e+02 Score=23.37 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHHhcchhH
Q 013878 53 HGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQKATPENF 132 (434)
Q Consensus 53 Hv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (434)
+=.=++.+++.|.+. |+++ ++++.....+... |+.+..+... ..+ . +.+
T Consensus 11 ~k~~~~~~~~~l~~~--G~~l--~aT~gT~~~l~~~-------gi~~~~v~~~-~~~------~-------------~~i 59 (110)
T cd01424 11 DKPEAVEIAKRLAEL--GFKL--VATEGTAKYLQEA-------GIPVEVVNKV-SEG------R-------------PNI 59 (110)
T ss_pred cHhHHHHHHHHHHHC--CCEE--EEchHHHHHHHHc-------CCeEEEEeec-CCC------c-------------hhH
Confidence 556788999999999 9996 4565444444444 6665554311 100 0 112
Q ss_pred HHHHHHHHhccCCCccEEEECCC-------chhHHHHHHHcCCCeEe
Q 013878 133 KKGLNAAVFETGRKISCMLTDAF-------LTFSGEMARDMHIPWLP 172 (434)
Q Consensus 133 ~~~l~~l~~~~~~~pd~vI~D~~-------~~~~~~vA~~lgIP~v~ 172 (434)
.+ ++++ .+.|+||.-.- .++-...|-.+|||++.
T Consensus 60 ~~----~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 60 VD----LIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HH----HHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 22 2222 47899987432 35566789999999984
No 211
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.61 E-value=42 Score=29.66 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+.+|++.+.++-.|-....-++..|..+ |++|++....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~--G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN--GFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC--CCEEEECCCC
Confidence 5699999999999999999999999999 9999877543
No 212
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=43.96 E-value=81 Score=31.64 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=27.9
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 37 SSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 37 ~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|.+.|+|+++-.+++=| +|+++|++. ++...+++.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~--~~~~~~~~~pg 37 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKS--NLLSELKVFPG 37 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhC--CCCCEEEEECC
Confidence 44567999999998877 689999988 76555555554
No 213
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=43.30 E-value=98 Score=30.30 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=53.2
Q ss_pred HhccCCcceEEecCCchhHHHHHHcCcccccCCCc-CChHHHHHHHHHHHccEEE---Ec--------CCCcCHHHHHHH
Q 013878 336 VLGHFSIGVFVTHCGANSVCESIANGVLMICRPFF-GDHRMNARLVEEVWGIGVK---VE--------GIVLTKSGVLQS 403 (434)
Q Consensus 336 lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P~~-~DQ~~na~~v~~~~G~G~~---l~--------~~~~~~~~l~~a 403 (434)
.+..++ +.+.-+|- -++|+..+|+|||+.=-. .=-.+.+++....|=++.- .+ .++.+++.|+++
T Consensus 261 a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~ 337 (381)
T COG0763 261 AFAAAD--AALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARA 337 (381)
T ss_pred HHHHhh--HHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHH
Confidence 344444 44444544 467999999999975211 0112344554444222211 01 356889999999
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHHHH
Q 013878 404 LELMFSHE--GKKMRENVRHLKEIVIE 428 (434)
Q Consensus 404 v~~ll~~~--~~~~r~~a~~l~~~~~~ 428 (434)
+..++.|+ .+++++..+++.+.++.
T Consensus 338 l~~ll~~~~~~~~~~~~~~~l~~~l~~ 364 (381)
T COG0763 338 LEELLLNGDRREALKEKFRELHQYLRE 364 (381)
T ss_pred HHHHhcChHhHHHHHHHHHHHHHHHcC
Confidence 99999983 24566666666665543
No 214
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=43.03 E-value=2.4e+02 Score=26.87 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=20.2
Q ss_pred CccEEEECCC--chhHHHHHHHcCCCeEeE
Q 013878 146 KISCMLTDAF--LTFSGEMARDMHIPWLPV 173 (434)
Q Consensus 146 ~pd~vI~D~~--~~~~~~vA~~lgIP~v~~ 173 (434)
+||+|.+... ...+..+++++|+|.+..
T Consensus 82 ~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 82 RPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred CCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 7998886432 244566789999999864
No 215
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=42.85 E-value=10 Score=38.27 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=42.5
Q ss_pred cCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHH
Q 013878 348 HCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRH 421 (434)
Q Consensus 348 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~ 421 (434)
|-|. ++.||+++|.|+++.=-.+ -+.-++.. -.|.-++.+.-....+++++.++..| ++++.+..+
T Consensus 377 ~FGi-v~IEAMa~glPvvAt~~GG----P~EiV~~~-~tG~l~dp~~e~~~~~a~~~~kl~~~--p~l~~~~~~ 442 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVATNNGG----PAEIVVHG-VTGLLIDPGQEAVAELADALLKLRRD--PELWARMGK 442 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEecCCC----ceEEEEcC-CcceeeCCchHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 4444 8899999999999873222 22333332 34555555322333799999999999 777666543
No 216
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=42.13 E-value=1.8e+02 Score=28.07 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc---cccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHHHHHHHH
Q 013878 50 FGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND---SLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEAVELLQK 126 (434)
Q Consensus 50 ~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~---~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (434)
..|--.=++.|++.|.++ ||++++++...... ..... ++++..++... . .. ...+.
T Consensus 13 ~GG~e~~~~~l~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~-------~i~~~~~~~~~--~-----~~-~~~~~---- 71 (374)
T TIGR03088 13 VGGLENGLVNLINHLPAD--RYRHAVVALTEVSAFRKRIQRP-------DVAFYALHKQP--G-----KD-VAVYP---- 71 (374)
T ss_pred CCcHHHHHHHHHhhcccc--ccceEEEEcCCCChhHHHHHhc-------CceEEEeCCCC--C-----CC-hHHHH----
Confidence 456668899999999999 99988887543221 12222 77777765210 0 11 11111
Q ss_pred hcchhHHHHHHHHHhccCCCccEEEECCC-chhHHHHHHHcCCCeEe
Q 013878 127 ATPENFKKGLNAAVFETGRKISCMLTDAF-LTFSGEMARDMHIPWLP 172 (434)
Q Consensus 127 ~~~~~~~~~l~~l~~~~~~~pd~vI~D~~-~~~~~~vA~~lgIP~v~ 172 (434)
.+...+++ .+||+|-+... ..++..++...++|...
T Consensus 72 ----~l~~~l~~------~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 72 ----QLYRLLRQ------LRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred ----HHHHHHHH------hCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 12222222 37998876543 33445567778998643
No 217
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=42.12 E-value=34 Score=35.58 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=53.4
Q ss_pred CCHHhHhccCCcceEEecC-Cch-hHHHHHHcCcccccCCCcC-ChHHHHHHHHHHHccEEEE-cCCCcCHHHHHHHHHH
Q 013878 331 APQTQVLGHFSIGVFVTHC-GAN-SVCESIANGVLMICRPFFG-DHRMNARLVEEVWGIGVKV-EGIVLTKSGVLQSLEL 406 (434)
Q Consensus 331 ~pq~~lL~~~~v~~~I~Hg-G~g-s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l-~~~~~~~~~l~~av~~ 406 (434)
+++.+++.-++.++|-+== =|| |-+||.+.|||.|+-=+.+ -++.+-..-... --|+.+ ++..-+.++..+++.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~-~~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPE-EYGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHG-GGTEEEE-SSSS-HHHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCc-CCcEEEEeCCCCCHHHHHHHHHH
Confidence 3788888888877777621 133 8899999999999877643 233222111111 235443 5556677877777777
Q ss_pred HhccC-------cHHHHHHHHHHHHH
Q 013878 407 MFSHE-------GKKMRENVRHLKEI 425 (434)
Q Consensus 407 ll~~~-------~~~~r~~a~~l~~~ 425 (434)
.|.+- ....|.+|+++++.
T Consensus 540 ~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 540 FLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66531 35567777777754
No 218
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=42.09 E-value=44 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 53 HGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 53 Hv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
=-.-.-.|+++|++. ||+|+++++.
T Consensus 18 Lgdv~~~L~kaL~~~--G~~V~Vi~P~ 42 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQ--GHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHHHT--T-EEEEEEE-
T ss_pred HhHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 334456899999999 9999999865
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.08 E-value=1.7e+02 Score=29.48 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=33.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~ 83 (434)
-|+++..++.|-..-...||..|. ++ |.+|.+++.+.++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccch
Confidence 344555599999999999999997 57 99999999987654
No 220
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=41.88 E-value=1.4e+02 Score=29.69 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=32.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCcccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~ 84 (434)
=+++...|+.|=..=.+.+|..++ +. |+.|.|++.+....+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSlEm~~~~ 237 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSLEMSAEQ 237 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHH
Confidence 355566699999999999998887 66 899999998854443
No 221
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.87 E-value=1.7e+02 Score=28.65 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=26.8
Q ss_pred CCeEEEEc-CCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLA-FRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~-~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
.++|+++- .|..|. .+|+.|.++ ||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~--G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLS--GYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHC--CCeEEEeCCC
Confidence 45899997 787775 589999999 9999998753
No 222
>PHA02542 41 41 helicase; Provisional
Probab=41.78 E-value=73 Score=32.44 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=32.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
|++..-|+.|-..=.+.+|...++. |+.|-|++-+-..+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~--g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQ--GYNVLYISMEMAEE 231 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEEeccCCHH
Confidence 4455559999999999999999988 99999999875444
No 223
>PRK08506 replicative DNA helicase; Provisional
Probab=41.71 E-value=1.4e+02 Score=30.46 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+.+|...++. |+.|.|++.+-...++
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCcCCHHHH
Confidence 35556669999999999999999888 9999999988544433
No 224
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=41.64 E-value=72 Score=30.66 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=44.4
Q ss_pred eeeeccccceeceeeeecccccccccccCCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 8 YLYGDISRTVGRFLQFHVRTATSVQEATQSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
++.=+||.+++.+...-...+.+- .......-.=|.=++.++.|-.--.+.|+++|++| |.++.++|=. |..
T Consensus 18 ~lL~PlS~ly~~i~~~r~~~~~~g-~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~r--G~~~gvvSRG-Ygg 89 (336)
T COG1663 18 FLLLPLSWLYAFIAGLRRKLAKKG-SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQAR--GVRVGVVSRG-YGG 89 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhc--CCeeEEEecC-cCC
Confidence 334456666666555544444442 11111101123335679999999999999999999 9999999654 443
No 225
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=41.13 E-value=74 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHh-cCCCcEEEEe
Q 013878 53 HGLTIFNLMLKLAS-AAPNLKFSFF 76 (434)
Q Consensus 53 Hv~P~l~La~~L~~-r~~Gh~Vt~~ 76 (434)
|...--+|+.+|.+ ++++.+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 67777889999988 4456677654
No 226
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.62 E-value=45 Score=32.16 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=38.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
|+|+++-....||+.=...+-..|++++|+.++++++.+.+.
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~ 43 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFA 43 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchH
Confidence 489999999999999999999999999999999999988643
No 227
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.88 E-value=97 Score=31.14 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.1
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 146 KISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 146 ~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
+||++|.... ...+|+++|||++.+.
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 7999999874 5788999999998665
No 228
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.86 E-value=55 Score=28.88 Aligned_cols=104 Identities=11% Similarity=-0.024 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHH
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLE 119 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~ 119 (434)
+.+|++.+.++-.|-....-++..|..+ |++|++....--.+.+.+.-. ..+..++.++-....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~--G~~vi~LG~~vp~e~~v~~~~---~~~pd~v~lS~~~~~----------- 147 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN--GFDVIDLGRDVPIDTVVEKVK---KEKPLMLTGSALMTT----------- 147 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC--CcEEEECCCCCCHHHHHHHHH---HcCCCEEEEcccccc-----------
Confidence 5699999999999999999999999999 999998865533333322210 014555555522211
Q ss_pred HHHHHHHhcchhHHHHHHHHHhcc-CCCccEEEECCCchhHHHHHHHcCCC
Q 013878 120 AVELLQKATPENFKKGLNAAVFET-GRKISCMLTDAFLTFSGEMARDMHIP 169 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~l~~~~-~~~pd~vI~D~~~~~~~~vA~~lgIP 169 (434)
..+.+.+.++.+.+.. ..++.++|.-..+ ....|+++|.=
T Consensus 148 --------~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 148 --------TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred --------CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 0122344444544432 1245566665443 35678887753
No 229
>PRK08760 replicative DNA helicase; Provisional
Probab=39.80 E-value=1.3e+02 Score=30.76 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=32.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCcccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~ 84 (434)
=|++..-|+.|-..=.+.+|...+ +. |+.|.|++.+....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~q 272 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQ 272 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHH
Confidence 355566699999999999999886 45 889999998754443
No 230
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.78 E-value=49 Score=31.48 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=34.1
Q ss_pred eEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 42 HVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
|++|+.. ++-|-..--.++|.+++++ |++|-++|+++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--GKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCc
Confidence 6778877 9999999999999999999 9999999998754
No 231
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=39.44 E-value=1.1e+02 Score=30.68 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.2
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
.+||++|... -+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 3899999884 35778999999998765
No 232
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=39.06 E-value=77 Score=26.98 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=22.1
Q ss_pred cceEEecCCch------hHHHHHHcCcccccCC
Q 013878 342 IGVFVTHCGAN------SVCESIANGVLMICRP 368 (434)
Q Consensus 342 v~~~I~HgG~g------s~~eal~~GvP~v~~P 368 (434)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44888888855 6779999999999985
No 233
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.99 E-value=54 Score=26.28 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=33.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
||++.+.++-.|-.-..-++..|..+ |++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~--G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA--GFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC--CCEEEECCCC
Confidence 58999999999999999999999999 9999998764
No 234
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=38.89 E-value=3.2e+02 Score=25.21 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
||++.-==+. |--=+..|.++|++. |+|+++++..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~---~~V~VvAP~~ 36 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL---ADVTVVAPDR 36 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC---CCEEEEeCCC
Confidence 4555443222 333467899999887 5899887764
No 235
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.78 E-value=86 Score=27.43 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC--CCCCCCC-CCccchHHHHHHHHHhcchh
Q 013878 55 LTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED--GVPMKNA-STESNRLEAVELLQKATPEN 131 (434)
Q Consensus 55 ~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 131 (434)
.=++.||+.|.+. |+++ ++|......+... |+.+..+.. ++|+-.. +.....++...-++.. ..
T Consensus 11 ~~l~~lAk~L~~l--Gf~I--~AT~GTAk~L~e~-------GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~--~~ 77 (187)
T cd01421 11 TGLVEFAKELVEL--GVEI--LSTGGTAKFLKEA-------GIPVTDVSDITGFPEILGGRVKTLHPKIHGGILAR--RD 77 (187)
T ss_pred ccHHHHHHHHHHC--CCEE--EEccHHHHHHHHc-------CCeEEEhhhccCCcHhhCCccccCChhhhhhhhcC--CC
Confidence 3468899999999 9996 4555444555555 777766642 4554322 2222333333333321 11
Q ss_pred HHHHHHHHHhccCCCccEEEECCC
Q 013878 132 FKKGLNAAVFETGRKISCMLTDAF 155 (434)
Q Consensus 132 ~~~~l~~l~~~~~~~pd~vI~D~~ 155 (434)
..+.. ++.+..-.+.|+||++..
T Consensus 78 ~~~~~-~~~~~~i~~idlVvvNlY 100 (187)
T cd01421 78 NEEHK-DLEEHGIEPIDLVVVNLY 100 (187)
T ss_pred ChhHH-HHHHcCCCCeeEEEEccc
Confidence 22222 332211157899999965
No 236
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=38.10 E-value=44 Score=29.31 Aligned_cols=37 Identities=5% Similarity=-0.038 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
||++.-.++.|=+.-.+.|.++|.++ |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~--g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE--GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC--cCEEEEEEchh
Confidence 68888888887777777999999999 99999998875
No 237
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.75 E-value=80 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~ 84 (434)
|||+++..-+-| ..|++.|.++ |+ |.+-+...+...
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~--g~-v~~sv~t~~g~~ 36 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEA--GY-VIVSVATSYGGE 36 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhc--CC-EEEEEEhhhhHh
Confidence 467777655554 4789999999 88 655444444433
No 238
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=37.35 E-value=42 Score=32.00 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+|+|+++-.++.| .-+|..|+++ ||+|++++-..
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~--g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARA--GFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHC--CCeEEEEEeCC
Confidence 5689999888877 3578889999 99999998654
No 239
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=48 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=24.0
Q ss_pred CCCccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 144 GRKISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 144 ~~~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
+.-||+|+ .|.-. --|..=|.++|||++.++=
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 34588775 78775 4456679999999998874
No 240
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.26 E-value=47 Score=28.92 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=31.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
||++.-.++.|=+. ...|.+.|+++ |++|.++.++..
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~--g~~V~vv~T~~A 39 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKR--GYQVTVLMTKAA 39 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHC--CCEEEEEEChhH
Confidence 78888888876554 89999999999 999999998853
No 241
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=37.18 E-value=1.1e+02 Score=30.59 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
++.++..+.. .+.+++.|.+- |-+|..+.+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~el--Gmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLES--GADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHC--CCEEEEEecC
Confidence 7777777665 88899999988 9999888666
No 242
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.04 E-value=3.3e+02 Score=24.94 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=32.5
Q ss_pred eEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.|++... ++-|=..=.-+||..|++. |.+|..+=..+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~--G~~VlaID~dp 40 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARL--GESVLAIDLDP 40 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCc
Confidence 7778877 9999999999999999999 99998886543
No 243
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=36.90 E-value=37 Score=31.47 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=32.7
Q ss_pred ceeeccCCHHhHhccCCcceEEecCCchhHHHHHHcCcccccCC
Q 013878 325 GKIVLQAPQTQVLGHFSIGVFVTHCGANSVCESIANGVLMICRP 368 (434)
Q Consensus 325 ~~v~~w~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~v~~P 368 (434)
..+.+-++-.++|.+++ ++||-.+- .-.||+.+|+|+++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECCH-HHHHHHHcCCceEEec
Confidence 33446678889999988 88887654 6679999999999875
No 244
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=36.82 E-value=53 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred cceEEecCCch------hHHHHHHcCcccccCC
Q 013878 342 IGVFVTHCGAN------SVCESIANGVLMICRP 368 (434)
Q Consensus 342 v~~~I~HgG~g------s~~eal~~GvP~v~~P 368 (434)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44777777644 6678999999999985
No 245
>PRK10867 signal recognition particle protein; Provisional
Probab=36.53 E-value=2.6e+02 Score=28.15 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=33.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~ 84 (434)
-|+++..++.|-..-...||..|+++. |++|.+++.+.++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchH
Confidence 355555599999999999999998762 799999999876543
No 246
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=36.43 E-value=1.7e+02 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=32.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
|.=++.++.|-.-=.+.|++.|+++ |++|.+++-. |..
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~--G~~~~IlSRG-Yg~ 77 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQAR--GYRPAILSRG-YGR 77 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhc--CCceEEEcCC-CCC
Confidence 4556779999999999999999999 9999999754 444
No 247
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.31 E-value=4.8e+02 Score=28.11 Aligned_cols=120 Identities=16% Similarity=-0.023 Sum_probs=60.9
Q ss_pred eEEEEcC--CCCCcHHHHHHHHHHHHhcCCCc--------------EEEEeecC------CccccccccccCCCCCCeEE
Q 013878 42 HVAVLAF--RFGSHGLTIFNLMLKLASAAPNL--------------KFSFFSTK------KSNDSLLSASKSRLPDNIKV 99 (434)
Q Consensus 42 ~Ill~~~--~~~GHv~P~l~La~~L~~r~~Gh--------------~Vt~~t~~------~~~~~~~~~~~~~~~~gi~f 99 (434)
+|+++.. ...|==.-++.|+.+|.++ ++ +|++++.. .+...+.+. |++.
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~--~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~-------Gv~v 353 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSA--IQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADA-------GIPV 353 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhc--ccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhC-------CCeE
Confidence 6777754 5578888999999999998 43 56665321 122233333 7777
Q ss_pred EEcCCCCCCCCCCCccchHHHHHHHHHhcc---hhHHHHHHHHHhccCCCccEEEECCC-c-hhHHHHHHHcCCCeEeE
Q 013878 100 YDIEDGVPMKNASTESNRLEAVELLQKATP---ENFKKGLNAAVFETGRKISCMLTDAF-L-TFSGEMARDMHIPWLPV 173 (434)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~pd~vI~D~~-~-~~~~~vA~~lgIP~v~~ 173 (434)
..++..-..... ........+..+..... ......+.+++++ .+||+|.+-.. . ..+..++...++|.+..
T Consensus 354 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~ 429 (694)
T PRK15179 354 SVYSDMQAWGGC-EFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSVVHIWQDGSIFACALAALLAGVPRIVL 429 (694)
T ss_pred EEeccCCccCcc-cccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence 777532100000 00001111111111110 0111223333333 37999987543 2 34566677789998653
No 248
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=36.10 E-value=2.2e+02 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhcC
Q 013878 44 AVLAFRFGSHGLTIFNLMLKLASAA 68 (434)
Q Consensus 44 ll~~~~~~GHv~P~l~La~~L~~r~ 68 (434)
.++-.++.||.-=|+.|-+.|.+++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhc
Confidence 4455688999999999999998883
No 249
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=36.03 E-value=62 Score=30.31 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhccCCCccEEEECCCchh-----HHHHHHHcCCCeEeEcCc
Q 013878 130 ENFKKGLNAAVFETGRKISCMLTDAFLTF-----SGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 130 ~~~~~~l~~l~~~~~~~pd~vI~D~~~~~-----~~~vA~~lgIP~v~~~~~ 176 (434)
+.+++.+++++++. .+.-+||.|.|+-. ..++|.+.+||++++--.
T Consensus 133 p~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 133 PHIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 46788888877654 57889999998643 446777999999987543
No 250
>PRK07773 replicative DNA helicase; Validated
Probab=35.91 E-value=1.7e+02 Score=32.52 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=32.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
|++..-|+.|-..=.+++|...+.++ |..|.|++.+....++
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~-~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRH-RLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCCCHHHH
Confidence 55556699999999999999987542 7889999987654443
No 251
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=35.89 E-value=38 Score=29.60 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=22.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|=+++-.|.|.+- ..||+++..+ |++||+++.+.
T Consensus 20 VR~ItN~SSG~~G--~~lA~~~~~~--Ga~V~li~g~~ 53 (185)
T PF04127_consen 20 VRFITNRSSGKMG--AALAEEAARR--GAEVTLIHGPS 53 (185)
T ss_dssp SEEEEES--SHHH--HHHHHHHHHT--T-EEEEEE-TT
T ss_pred ceEecCCCcCHHH--HHHHHHHHHC--CCEEEEEecCc
Confidence 3355566666654 5789999999 99999999884
No 252
>PRK06849 hypothetical protein; Provisional
Probab=35.79 E-value=68 Score=31.57 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 38 SSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 38 ~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.++++|+++... ..--+++++.|.++ ||+|+++....
T Consensus 2 ~~~~~VLI~G~~----~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGAR----APAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 345678777432 23579999999999 99999987654
No 253
>PRK14099 glycogen synthase; Provisional
Probab=35.41 E-value=41 Score=34.37 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=28.6
Q ss_pred CCeEEEEcC------CCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAF------RFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~------~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+|+|++++. =+.|=-.-.-.|.++|+++ ||+|.++++.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~--g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAH--GVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 678999874 1233334467899999999 9999999774
No 254
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=34.87 E-value=2.3e+02 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=33.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHh-cCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLAS-AAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~-r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=+++...|+.|=-.=.++++..++. . |+.|.|++.+.....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHH
Confidence 4555666999999999999999875 5 8999999988654443
No 255
>PRK09165 replicative DNA helicase; Provisional
Probab=34.55 E-value=1.9e+02 Score=29.63 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcC-------------CCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAA-------------PNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~-------------~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+.+|...+.++ .|..|.|++.+-..+++
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 355566699999999999998887531 16889999988654444
No 256
>PLN02316 synthase/transferase
Probab=34.48 E-value=72 Score=35.79 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCeEEEEcC---C---CCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAF---R---FGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~---~---~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
.|||+++++ | ..|=-.-.-.|+++|+++ ||+|.+++..
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~--Gh~V~VitP~ 630 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDL--NHNVDIILPK 630 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHc--CCEEEEEecC
Confidence 368999885 3 223333457899999999 9999999875
No 257
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=34.28 E-value=61 Score=31.48 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=21.5
Q ss_pred CccEEE--ECCCc-hhHHHHHHHcCCCeEeEcCc
Q 013878 146 KISCML--TDAFL-TFSGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 146 ~pd~vI--~D~~~-~~~~~vA~~lgIP~v~~~~~ 176 (434)
+||+|| .|.+. .++..+|..++||.+.+...
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 789887 58885 55677899999998887643
No 258
>PRK14099 glycogen synthase; Provisional
Probab=34.23 E-value=68 Score=32.79 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=37.6
Q ss_pred eEEe---cCCc-hhHHHHHHcCcccccCCCcC--ChHHHHHH---HHHHHccEEEEcCCCcCHHHHHHHHHH---Hhcc
Q 013878 344 VFVT---HCGA-NSVCESIANGVLMICRPFFG--DHRMNARL---VEEVWGIGVKVEGIVLTKSGVLQSLEL---MFSH 410 (434)
Q Consensus 344 ~~I~---HgG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~---v~~~~G~G~~l~~~~~~~~~l~~av~~---ll~~ 410 (434)
+||. +=|. .+.+||+++|.|.|+.-..+ |--..... .+.. +.|..++.. ++++|++++.+ +++|
T Consensus 372 ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~--d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 372 ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPV--TADALAAALRKTAALFAD 447 (485)
T ss_pred EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCC--CHHHHHHHHHHHHHHhcC
Confidence 6665 3343 36789999997766654322 21111100 0111 367777654 78999999987 5666
No 259
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.17 E-value=1e+02 Score=26.07 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcc-CCCccEEEECCCc----------hhHHHHHHHcCCCeEeEcCch
Q 013878 132 FKKGLNAAVFET-GRKISCMLTDAFL----------TFSGEMARDMHIPWLPVFVAM 177 (434)
Q Consensus 132 ~~~~l~~l~~~~-~~~pd~vI~D~~~----------~~~~~vA~~lgIP~v~~~~~~ 177 (434)
.++++.++.... .+.||+|++.--+ --+..+|+++|||+.-.+...
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 456666654321 3689999975332 236789999999998776543
No 260
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.71 E-value=3.2e+02 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCcHHHH---HHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLTI---FNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~---l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+..-+-++.++.||=.++ ++|+.+|... -++|.++..+.
T Consensus 110 ~~pgve~stGSLGqGLsvavGmAlg~kl~~~--~~~VyvilGDG 151 (243)
T COG3959 110 KTPGVEVSTGSLGQGLSVAVGMALGAKLKGS--PYRVYVILGDG 151 (243)
T ss_pred CCCceeecCCcccccchHHHHHHHHHhhcCC--CceEEEEecCc
Confidence 445788889999998776 7888888877 79999998774
No 261
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.69 E-value=70 Score=29.78 Aligned_cols=26 Identities=8% Similarity=0.205 Sum_probs=21.8
Q ss_pred ceEEecCCchhHHHHHH------cCcccccCC
Q 013878 343 GVFVTHCGANSVCESIA------NGVLMICRP 368 (434)
Q Consensus 343 ~~~I~HgG~gs~~eal~------~GvP~v~~P 368 (434)
.++|+-||-||++.+++ .++|++.+-
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 39999999999999986 477877765
No 262
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.62 E-value=63 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=24.7
Q ss_pred HHHHHHhccCCCccEEEECCCchh--HHHHHHHcCCCeEeEc
Q 013878 135 GLNAAVFETGRKISCMLTDAFLTF--SGEMARDMHIPWLPVF 174 (434)
Q Consensus 135 ~l~~l~~~~~~~pd~vI~D~~~~~--~~~vA~~lgIP~v~~~ 174 (434)
-+|.+++. +||+||......- ....-++.|||++.+.
T Consensus 61 n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 35666543 7999997654322 3445678999998775
No 263
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=33.59 E-value=2.5e+02 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=30.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
+++...|+.|=-.=.++++..++... |+.|.|++.+....
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~~~~ 55 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKE 55 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCCCHH
Confidence 45555688899999999988877642 89999999886443
No 264
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.47 E-value=79 Score=28.30 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+.+|++.+.++-.|-....-++..|..+ |++|++.-...
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~--G~~Vi~LG~~v 126 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNN--GYEVIDLGVMV 126 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC--CCEEEECCCCC
Confidence 5699999999999999999999999999 99999987543
No 265
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=33.03 E-value=78 Score=28.62 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=32.1
Q ss_pred eEEEEcC--CCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 42 HVAVLAF--RFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 42 ~Ill~~~--~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+|.++++ ++-|-..-.-+|+.+|+++ |++|.++-+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~--GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL--GKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc--CCeEEEEecC
Confidence 6777777 8889999999999999999 9999998765
No 266
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.67 E-value=1.3e+02 Score=23.73 Aligned_cols=30 Identities=3% Similarity=0.123 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 50 FGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 50 ~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
..|.-..++.+.+.++++ |..|..+|....
T Consensus 62 ~sg~~~~~~~~~~~ak~~--g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKER--GAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHT--TSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhc--CCeEEEEeCCCC
Confidence 668999999999999999 999988887653
No 267
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.54 E-value=64 Score=28.73 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
+||++.-.++.+ ..=.+.|.++|.+. |++|+++.++..
T Consensus 4 krIllgITGsia-a~ka~~lvr~L~~~--g~~V~vi~T~~A 41 (204)
T PRK05920 4 KRIVLAITGASG-AIYGVRLLECLLAA--DYEVHLVISKAA 41 (204)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHHC--CCEEEEEEChhH
Confidence 478888777764 46899999999999 999999999863
No 268
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=32.50 E-value=63 Score=28.24 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHh-cCCCcEEEEeecCCc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLAS-AAPNLKFSFFSTKKS 81 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~-r~~Gh~Vt~~t~~~~ 81 (434)
||++.-.++.| ..=...|.++|.+ . |++|+++.|+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~--g~~V~vv~T~~A 40 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVG--EIETHLVISQAA 40 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhc--CCeEEEEECHHH
Confidence 78888888876 6669999999999 6 899999999853
No 269
>PRK08006 replicative DNA helicase; Provisional
Probab=32.32 E-value=2.8e+02 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCcccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~ 84 (434)
=|++..-|+.|-..=.+.+|...+ +. |+.|.|++.+-..++
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlEM~~~q 267 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLEMPGEQ 267 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEeccCCHHH
Confidence 355555699999999999999987 45 899999998854433
No 270
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=32.31 E-value=72 Score=34.90 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=44.2
Q ss_pred cCCHHh---HhccCCcceEEe---cCCch-hHHHHHHcCcc---cccCC-CcCChHHHHHHHHHHHc-cEEEEcCCCcCH
Q 013878 330 QAPQTQ---VLGHFSIGVFVT---HCGAN-SVCESIANGVL---MICRP-FFGDHRMNARLVEEVWG-IGVKVEGIVLTK 397 (434)
Q Consensus 330 w~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP---~v~~P-~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 397 (434)
.+++.+ ++.-++ +||. .-|+| +..|+++||+| ++++. +.+. +.. . | -|+.++.. +.
T Consensus 363 ~v~~~el~aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~----~~~---l-~~~allVnP~--D~ 430 (797)
T PLN03063 363 SVDFNYLCALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA----GQS---L-GAGALLVNPW--NI 430 (797)
T ss_pred CCCHHHHHHHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc----hhh---h-cCCeEEECCC--CH
Confidence 345444 455567 5554 45776 66699999999 44443 3321 111 2 4 57777654 88
Q ss_pred HHHHHHHHHHhc
Q 013878 398 SGVLQSLELMFS 409 (434)
Q Consensus 398 ~~l~~av~~ll~ 409 (434)
+++++||.++|+
T Consensus 431 ~~lA~AI~~aL~ 442 (797)
T PLN03063 431 TEVSSAIKEALN 442 (797)
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 271
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=32.28 E-value=58 Score=21.03 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 013878 396 TKSGVLQSLELMFSHEGKKMRENVRHL 422 (434)
Q Consensus 396 ~~~~l~~av~~ll~~~~~~~r~~a~~l 422 (434)
++++|.+||..+.+++ -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~-~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 5789999999988763 5677777764
No 272
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=32.00 E-value=87 Score=26.07 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~ 103 (434)
+.+|++++.-+.+|+.=.+.+.+.+++..|.+++.++.-.-....+.... ...+++++..+.
T Consensus 59 ~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~--~~~~n~evr~Fn 120 (142)
T PF07801_consen 59 SSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLK--KNFCNVEVRKFN 120 (142)
T ss_pred CCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH--hcCCceEEEECC
Confidence 45899999999999999999999999999999999987543222222110 111378888875
No 273
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.99 E-value=2.2e+02 Score=28.29 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.4
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEeE
Q 013878 146 KISCMLTDAFLTFSGEMARDMHIPWLPV 173 (434)
Q Consensus 146 ~pd~vI~D~~~~~~~~vA~~lgIP~v~~ 173 (434)
+||++|.... ...+|+++|||++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 7999999854 467899999998743
No 274
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=31.86 E-value=1.4e+02 Score=26.13 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=41.4
Q ss_pred cCCCcCChHHHHHHHHHHHccEEEEc------------CCCcCHHHHH----HHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 013878 366 CRPFFGDHRMNARLVEEVWGIGVKVE------------GIVLTKSGVL----QSLELMFSHEGKKMRENVRHLKEIVIEA 429 (434)
Q Consensus 366 ~~P~~~DQ~~na~~v~~~~G~G~~l~------------~~~~~~~~l~----~av~~ll~~~~~~~r~~a~~l~~~~~~a 429 (434)
+.|...||...-..+-+..-+|+.-. ...++++.++ +-|+++|.| +.+=+|-+++.+.+.+|
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d--~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD--AGIIRHRGKIQAIIGNA 99 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC--chhHHhHHHHHHHHHHH
Confidence 45678999998887666556676532 2457777776 678889988 66655555555555444
No 275
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=31.86 E-value=97 Score=31.60 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=20.8
Q ss_pred CCCccEEEECCC--chhHHHHHHHcCCCeEeEc
Q 013878 144 GRKISCMLTDAF--LTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 144 ~~~pd~vI~D~~--~~~~~~vA~~lgIP~v~~~ 174 (434)
..+||+|+.... -..|..+++++|||.+...
T Consensus 399 ~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred CCCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 458999997654 3557789999999987654
No 276
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=31.60 E-value=3.2e+02 Score=23.16 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=40.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc-ccccccccCCCCCCeEEEEcCCCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN-DSLLSASKSRLPDNIKVYDIEDGV 106 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~gi~f~~l~~~~ 106 (434)
-|-+++.++.|-....+.+|.+.+.+ |++|.|+=.-... ..=+....... +++++.....+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~ 66 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGF 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCC
Confidence 57888999999999999999999988 9999994332211 00000001112 278888876543
No 277
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=31.44 E-value=5e+02 Score=25.55 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHH
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEA 120 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~ 120 (434)
++|.+++.=..||+.= -.|-++|.+++| +|.|+.-. .+.+++. |+ .++-+ .+ .-..+.+
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~--~~efvGvg--G~~m~ae-------G~--~sl~~-----~~--elsvmGf 60 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYP--DVEFVGVG--GEKMEAE-------GL--ESLFD-----ME--ELSVMGF 60 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCC--CeEEEEec--cHHHHhc-------cC--ccccC-----HH--HHHHhhH
Confidence 3788888877788764 357778888754 55566543 3455554 32 22210 00 0111222
Q ss_pred HHHHHHh--cchhHHHHHHHHHhccCCCccEEE-ECCCc--hhHHHHHHHcC--CCeEeEcCc
Q 013878 121 VELLQKA--TPENFKKGLNAAVFETGRKISCML-TDAFL--TFSGEMARDMH--IPWLPVFVA 176 (434)
Q Consensus 121 ~~~~~~~--~~~~~~~~l~~l~~~~~~~pd~vI-~D~~~--~~~~~vA~~lg--IP~v~~~~~ 176 (434)
...+-+. .....++.++.+.+ .+||++| .|+-- .-...-.++.| ||.+.+...
T Consensus 61 ~EVL~~lp~llk~~~~~~~~i~~---~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~P 120 (381)
T COG0763 61 VEVLGRLPRLLKIRRELVRYILA---NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSP 120 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECc
Confidence 2222211 11223444444443 4899888 67542 22233455677 998877543
No 278
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.37 E-value=94 Score=29.38 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred eEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 344 VFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 344 ~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
++|+-||-||++++++. ++|++.+-.. .+|- ....+.+++.+++++++++
T Consensus 66 ~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF---L~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 66 LAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF---ITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred EEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc---cccCCHHHHHHHHHHHHcC
Confidence 99999999999999874 5676655421 1121 1134567777777777664
No 279
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.16 E-value=3.6e+02 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
+|+++..-+-| ..|++.|.++ |++|++.+...+.
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~~--g~~v~~Svat~~g 37 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAAA--GVDIVLSLAGRTG 37 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHhC--CCeEEEEEccCCC
Confidence 78887665554 4789999999 9988776665444
No 280
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=31.06 E-value=69 Score=26.67 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=21.1
Q ss_pred cceEEecCCc------hhHHHHHHcCcccccCC
Q 013878 342 IGVFVTHCGA------NSVCESIANGVLMICRP 368 (434)
Q Consensus 342 v~~~I~HgG~------gs~~eal~~GvP~v~~P 368 (434)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 4488888664 46778899999999885
No 281
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=30.64 E-value=46 Score=26.46 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHcCcccccCCCcCChHHHHHHHHHHHccEEEEc-----------C---CCcCHHHHHHHHHHH
Q 013878 358 IANGVLMICRPFFGDHRMNARLVEEVWGIGVKVE-----------G---IVLTKSGVLQSLELM 407 (434)
Q Consensus 358 l~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-----------~---~~~~~~~l~~av~~l 407 (434)
.+++.++...|..+|.-.|+-|+.+ |.-.-++ + -+.+.|++..+|+-+
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M 121 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFM 121 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHH
Confidence 6788899999999999999999987 4432221 1 257889999999754
No 282
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.52 E-value=1e+02 Score=29.85 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=36.5
Q ss_pred CHHhHhccCCcceEEe------cCC---chhHHHHHHcCccccc---CCCcCChHHHHHHHHHHHccEEEEc
Q 013878 332 PQTQVLGHFSIGVFVT------HCG---ANSVCESIANGVLMIC---RPFFGDHRMNARLVEEVWGIGVKVE 391 (434)
Q Consensus 332 pq~~lL~~~~v~~~I~------HgG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~G~~l~ 391 (434)
...++|.++.+.+||- |+| ..-+.+||.+|+++|+ -|+...-..-.+...+. |+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 4556776665556665 443 3456799999999999 48754333333444454 7766543
No 283
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=29.82 E-value=45 Score=28.11 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=24.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
|.++-.+..|+ +||..|+++ ||+|++.+.+.
T Consensus 2 I~ViGaG~~G~-----AlA~~la~~--g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGT-----ALAALLADN--GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHH-----HHHHHHHHC--TEEEEEETSCH
T ss_pred EEEECcCHHHH-----HHHHHHHHc--CCEEEEEeccH
Confidence 56666666665 789999999 99999998874
No 284
>PRK06904 replicative DNA helicase; Validated
Probab=29.48 E-value=1.9e+02 Score=29.47 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHh-cCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLAS-AAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~-r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+.+|...+. . |+.|.|++.+-..+++
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHH
Confidence 3555556999999999999998864 5 8999999988554443
No 285
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.43 E-value=2.8e+02 Score=23.70 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHH
Q 013878 373 HRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHE-GKKMRENVRHLKEIVI 427 (434)
Q Consensus 373 Q~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~-~~~~r~~a~~l~~~~~ 427 (434)
+-.|+++.++. |.--.+--+..+.++|..+.++=|.|+ ..+++....++.++.+
T Consensus 110 ~~LN~aY~~rF-gfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 110 TELNAAYVERF-GFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHHHhc-CCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 46789999887 887555445567888888888777775 6778877777766543
No 286
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=40 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=33.1
Q ss_pred cCCchhHH--HHHHcCcccccCCCcCChHHHHHH-HHHHHccE
Q 013878 348 HCGANSVC--ESIANGVLMICRPFFGDHRMNARL-VEEVWGIG 387 (434)
Q Consensus 348 HgG~gs~~--eal~~GvP~v~~P~~~DQ~~na~~-v~~~~G~G 387 (434)
-||||+++ .|-.+||-++++-+...|..+++. +.+. |+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 39999776 566679999999999999999965 7777 888
No 287
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.36 E-value=1.1e+02 Score=23.40 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=25.4
Q ss_pred CccEEE--ECCCc----hhHHHHHHHcCCCeEeEcCchhhHH
Q 013878 146 KISCML--TDAFL----TFSGEMARDMHIPWLPVFVAMPYNV 181 (434)
Q Consensus 146 ~pd~vI--~D~~~----~~~~~vA~~lgIP~v~~~~~~~~~~ 181 (434)
++|+|| +|... .-+...|++.|+|++..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 578876 57653 3356789999999998875555443
No 288
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.18 E-value=63 Score=27.95 Aligned_cols=45 Identities=7% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLL 86 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~ 86 (434)
+..++++-.++.|--+=..++++++.++ |+.|.|++.+.....+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeecCceecccc
Confidence 4579999999999999999999999999 99999998875544443
No 289
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.17 E-value=66 Score=32.69 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHH------------HHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLTI------------FNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~------------l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.++|++...|+.=-+.|. ..||+++..+ |++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~--GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA--GAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC--CCcEEEEeCCc
Confidence 558998888888888887 5789999999 99999999874
No 290
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.12 E-value=94 Score=29.31 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=34.7
Q ss_pred ccCCcceEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 338 GHFSIGVFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 338 ~~~~v~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
..++ ++|+-||-||++.+.+. ++|++.+-... +|- ...++.+++.+++++++.+
T Consensus 63 ~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF---Lt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHAGH--------------LGF---LTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeCCC--------------ccc---CCcCCHHHHHHHHHHHHcC
Confidence 3455 99999999999988764 66766553210 111 1234567777777777664
No 291
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=29.07 E-value=3.5e+02 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.4
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEeE
Q 013878 146 KISCMLTDAFLTFSGEMARDMHIPWLPV 173 (434)
Q Consensus 146 ~pd~vI~D~~~~~~~~vA~~lgIP~v~~ 173 (434)
+||++|... ....+|+++|||++.+
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 799999873 4577899999999865
No 292
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.07 E-value=1.1e+02 Score=30.25 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=35.0
Q ss_pred CCeEEEE-cCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc
Q 013878 40 EQHVAVL-AFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 40 ~~~Ill~-~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~ 84 (434)
++.|+++ -.-+.|-..-+-.||..++++ |+++-++..+-|++.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkk--G~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKK--GYKVALVCADTFRAG 143 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhc--CCceeEEeecccccc
Confidence 3445554 458889999999999999999 999999998877643
No 293
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=28.75 E-value=1.1e+02 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.+++++..++. +-|++.++++|.++ |.+|+++-...
T Consensus 99 ~~~llIaGGiG--iaPl~~l~~~l~~~--~~~v~l~~g~r 134 (281)
T PRK06222 99 GTVVCVGGGVG--IAPVYPIAKALKEA--GNKVITIIGAR 134 (281)
T ss_pred CeEEEEeCcCc--HHHHHHHHHHHHHC--CCeEEEEEecC
Confidence 47888887663 99999999999998 88998776544
No 294
>PRK05636 replicative DNA helicase; Provisional
Probab=28.71 E-value=1.7e+02 Score=30.05 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|--.=.+.+|...+ ++ |..|.|++.+-...++
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEeeCCHHHH
Confidence 456666699999999999998876 45 7889999887544433
No 295
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.48 E-value=2.5e+02 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.8
Q ss_pred CCccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 145 RKISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 145 ~~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
..||+|| .|... ..+..-|.++|||.+.++-
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVD 158 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEec
Confidence 5788887 57653 4566779999999999874
No 296
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=28.41 E-value=90 Score=27.88 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=38.2
Q ss_pred ccccccccccCCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccc
Q 013878 26 RTATSVQEATQSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSND 83 (434)
Q Consensus 26 ~~~~~~~~~~~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~ 83 (434)
....+|+.+.+.. ++||++...++. -..-...|.+.|+ + |++|.++.|+....
T Consensus 6 ~~~~~~~~~~~~~-~k~IllgVtGSI-AAyk~~~lvr~L~-~--g~~V~VvmT~~A~~ 58 (209)
T PLN02496 6 PEVDAMEVNTAPR-KPRILLAASGSV-AAIKFGNLCHCFS-E--WAEVRAVVTKASLH 58 (209)
T ss_pred CCccchhhccCCC-CCEEEEEEeCHH-HHHHHHHHHHHhc-C--CCeEEEEEChhHhh
Confidence 3445666664433 568988888876 5666688999997 6 89999999986433
No 297
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=28.35 E-value=2.6e+02 Score=27.87 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCCCCCCCCCCCccch
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNR 117 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~ 117 (434)
...+|+++.-+.. .+.|++.|. +- |.+|..+++........+......+.+.-.+.-.+.+
T Consensus 287 ~Gk~vai~~~~~~-----~~~la~~l~~el--G~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~----------- 348 (415)
T cd01977 287 KGKKVCIWTGGPK-----LWHWTKVIEDEL--GMQVVAMSSKFGHQEDFEKVIARGGEGTIYIDDPNEL----------- 348 (415)
T ss_pred CCCEEEEECCCch-----HHHHHHHHHHhc--CCEEEEEEEEeccHHHHHHHHHhcCCceEEEeCCCHH-----------
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeE
Q 013878 118 LEAVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPV 173 (434)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~ 173 (434)
.+.+.+++. +||+||.....- .+|+++|||++..
T Consensus 349 -------------e~~~~~~~~------~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 349 -------------EFFEILEML------KPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred -------------HHHHHHHhc------CCCEEEecCccc---hhhhhcCCCEEec
No 298
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=28.25 E-value=71 Score=31.84 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=27.5
Q ss_pred EEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEE-EeecCCc
Q 013878 43 VAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFS-FFSTKKS 81 (434)
Q Consensus 43 Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt-~~t~~~~ 81 (434)
|++... .+.|-..-.+.|.++|++| |++|. |=+.|+|
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~r--g~~VqpfKvGPDY 41 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRR--GLKVQPFKVGPDY 41 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhc--CCcccccccCCCc
Confidence 444443 7789999999999999999 99984 3334444
No 299
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.16 E-value=1.5e+02 Score=26.85 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=34.7
Q ss_pred eEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 42 HVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
-|.+++. |+.|-..-.+.||.+|+++ |-+|+++=.++++
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~--G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAAR--GARVALIDADPNQ 42 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 5777777 9999999999999999999 9999999887754
No 300
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=27.91 E-value=65 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.4
Q ss_pred cceEEecCCch------hHHHHHHcCcccccC
Q 013878 342 IGVFVTHCGAN------SVCESIANGVLMICR 367 (434)
Q Consensus 342 v~~~I~HgG~g------s~~eal~~GvP~v~~ 367 (434)
.+++++|.|-| ++++|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44888888754 677999999999998
No 301
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.68 E-value=70 Score=27.84 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=28.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
|++.-.++.|-+.- ..|.+.|+++ |++|.++.|+..
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~--g~~V~vv~T~~A 37 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEA--GVEVHLVISDWA 37 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHC--CCEEEEEECccH
Confidence 55555666655554 8999999999 999999999863
No 302
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.53 E-value=1.1e+02 Score=26.37 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccCCCccEEEECCCchhHHHHHHHcCCCeEeEcCc
Q 013878 132 FKKGLNAAVFETGRKISCMLTDAFLTFSGEMARDMHIPWLPVFVA 176 (434)
Q Consensus 132 ~~~~l~~l~~~~~~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~~ 176 (434)
+...++++.+ .+.|+||.+.. +..+|+++|+|++.+.++
T Consensus 114 ~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 114 IEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 4445555443 37999999964 478999999999988764
No 303
>PRK08840 replicative DNA helicase; Provisional
Probab=27.34 E-value=3.5e+02 Score=27.49 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=32.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+.+|...+ +. |+.|.|++.+-..+++
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLEMPAEQL 261 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEeccCCHHHH
Confidence 355556699999999999999987 45 8999999988544443
No 304
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.28 E-value=1.2e+02 Score=27.46 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=23.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|=+++-.+.|-+= .+||++|.++ ||+|+++...
T Consensus 17 VR~itN~SSG~iG--~aLA~~L~~~--G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQLG--KIIAETFLAA--GHEVTLVTTK 49 (229)
T ss_pred ceeecCccchHHH--HHHHHHHHhC--CCEEEEEECc
Confidence 5556666666443 4678999999 9999998744
No 305
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.08 E-value=83 Score=30.22 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=24.2
Q ss_pred CCccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 145 RKISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 145 ~~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
..||+|| .|..- ..+..=|.++|||.+.++=
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 4688876 67664 5667779999999998874
No 306
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=27.05 E-value=4.4e+02 Score=23.24 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=56.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc-ccccccccCCCCCCeEEEEcCCCCCCCCCCCccchHHH
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN-DSLLSASKSRLPDNIKVYDIEDGVPMKNASTESNRLEA 120 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~gi~f~~l~~~~~~~~~~~~~~~~~~ 120 (434)
=|.+++..+.|-..--+.+|.+-.-+ |.+|.++=.=... ..=+.......+..+.|+.+++++..+... ...-
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh--G~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~----~~~d 103 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH--GLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQD----READ 103 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC--CCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcC----cHHH
Confidence 57888889999998888888888877 8898776432211 000000000112368888888766433221 1111
Q ss_pred HHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCch
Q 013878 121 VELLQKATPENFKKGLNAAVFETGRKISCMLTDAFLT 157 (434)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~~ 157 (434)
+ .++........+. +.+ .+.|+||.|-+++
T Consensus 104 ~----~aa~~~w~~a~~~-l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 104 I----AAAKAGWEHAKEA-LAD--GKYDLVILDELNY 133 (198)
T ss_pred H----HHHHHHHHHHHHH-HhC--CCCCEEEEehhhH
Confidence 1 1121222222222 222 4799999997654
No 307
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=26.91 E-value=48 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 374 RMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 374 ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
.+.+.+=++- |+|+.+ |+|+|.++|.+.++.
T Consensus 102 ~d~~~Fe~~c-GVGV~V-----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 102 IDVAEFEKAC-GVGVVV-----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp --HHHHHHTT-TTT---------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHc-CCCeEE-----CHHHHHHHHHHHHHH
Confidence 3444444444 999987 899999999999975
No 308
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=26.90 E-value=5.1e+02 Score=23.98 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+++|+++.+++...-. .+..+|.++ |++|.++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~a--G~~v~~v~~~ 37 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRL--GVEPEYVHIN 37 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHC--CCcEEEEeec
Confidence 5689999998776543 557889888 9999888764
No 309
>PRK05748 replicative DNA helicase; Provisional
Probab=26.83 E-value=3.5e+02 Score=27.24 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=33.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++...|+.|=..=.++++...+ ++ |..|.|++.+...+++
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHH
Confidence 466666699999999999999876 56 8999999987554443
No 310
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=26.74 E-value=65 Score=33.82 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.8
Q ss_pred cceEEecCCc------hhHHHHHHcCcccccCC
Q 013878 342 IGVFVTHCGA------NSVCESIANGVLMICRP 368 (434)
Q Consensus 342 v~~~I~HgG~------gs~~eal~~GvP~v~~P 368 (434)
.+++++|.|- +++++|...++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4488888774 47789999999999883
No 311
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.60 E-value=1.5e+02 Score=30.37 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC--CCCCCCCC-CccchHHHHHHHHHhcchh
Q 013878 55 LTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED--GVPMKNAS-TESNRLEAVELLQKATPEN 131 (434)
Q Consensus 55 ~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 131 (434)
.=++.||+.|.+. |+++ ++|......+... ||.+..+.+ ++|+-... .....+....-++. ...
T Consensus 15 ~~iv~lAk~L~~l--GfeI--~AT~GTak~L~e~-------GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa--~r~ 81 (513)
T PRK00881 15 TGIVEFAKALVEL--GVEI--LSTGGTAKLLAEA-------GIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILA--RRD 81 (513)
T ss_pred ccHHHHHHHHHHC--CCEE--EEcchHHHHHHHC-------CCeeEEeecccCCchhcCCccccCCchhhhhhcc--CCC
Confidence 4478999999999 9996 4565545555555 777766543 55543321 11222222222221 111
Q ss_pred HHHHHHHHHhccCCCccEEEECCC
Q 013878 132 FKKGLNAAVFETGRKISCMLTDAF 155 (434)
Q Consensus 132 ~~~~l~~l~~~~~~~pd~vI~D~~ 155 (434)
..+..+++.+..=.+.|+||++..
T Consensus 82 ~~~h~~~l~~~~i~~IDlVvvNLY 105 (513)
T PRK00881 82 NPEHVAALEEHGIEPIDLVVVNLY 105 (513)
T ss_pred CHHHHHHHHHcCCCceeEEEEeCc
Confidence 233334433221146788888755
No 312
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=26.41 E-value=61 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 54 GLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 54 v~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+--.+-|+..|+++ ||+|+++.++.
T Consensus 13 ~p~alYl~~~Lk~~--G~~v~Va~npA 37 (139)
T PF09001_consen 13 TPSALYLSYKLKKK--GFEVVVAGNPA 37 (139)
T ss_dssp HHHHHHHHHHHHCT--TEEEEEEE-HH
T ss_pred hHHHHHHHHHHHhc--CCeEEEecCHH
Confidence 45578899999999 99999999985
No 313
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.28 E-value=1.1e+02 Score=26.70 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred eEEEEcC---CC-CCcHHHH-HHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC
Q 013878 42 HVAVLAF---RF-GSHGLTI-FNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 42 ~Ill~~~---~~-~GHv~P~-l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~ 103 (434)
||.++-. |+ .|=+--+ -.|+..|.++ ||+||++............+ .|++.+.++
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~~~~y-----~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYKEFEY-----NGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCCCccc-----CCeEEEEeC
Confidence 6777654 22 4444433 3588888888 99999997764433222222 278888886
No 314
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=25.86 E-value=1.6e+02 Score=30.03 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcCC--CCCCCCC-CCccchHHHHHHHHHhcchhH
Q 013878 56 TIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIED--GVPMKNA-STESNRLEAVELLQKATPENF 132 (434)
Q Consensus 56 P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 132 (434)
=++.|++.|.+. |+++ ++|......+... |+.+..+.+ ++|+-.+ +.+...++.-.-++.. ...
T Consensus 12 ~iv~lAk~L~~l--GfeI--iATgGTak~L~e~-------GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLar--r~~ 78 (511)
T TIGR00355 12 GIVEFAQGLVER--GVEL--LSTGGTAKLLAEA-------GVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILAR--RGD 78 (511)
T ss_pred cHHHHHHHHHHC--CCEE--EEechHHHHHHHC-------CCeEEEeecccCCchhhCCccccCCchhhhhhhcC--CCc
Confidence 367899999999 9996 4565545555555 777766643 5555332 2222223322222221 112
Q ss_pred HHHHHHHHhccCCCccEEEECCC
Q 013878 133 KKGLNAAVFETGRKISCMLTDAF 155 (434)
Q Consensus 133 ~~~l~~l~~~~~~~pd~vI~D~~ 155 (434)
.+ ++++.+..=.+.|+||++..
T Consensus 79 ~~-~~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 79 DD-DADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred hH-HHHHHHcCCCceeEEEEecc
Confidence 23 33433221157899998855
No 315
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.63 E-value=1.4e+02 Score=24.55 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=41.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccccccccCCCCCCeEEEEcC
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~~~~~~~~~~gi~f~~l~ 103 (434)
++|++-+..+-+|-.=---++..|..+ |++|...-.....+++.++.. ..+..++.++
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~--GfeVi~LG~~v~~e~~v~aa~---~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNA--GFNVVNLGVLSPQEEFIKAAI---ETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHH---HcCCCEEEEe
Confidence 589999999999999999999999998 999998765433333332211 0145566665
No 316
>PRK09620 hypothetical protein; Provisional
Probab=25.36 E-value=95 Score=28.16 Aligned_cols=31 Identities=6% Similarity=-0.215 Sum_probs=23.3
Q ss_pred EEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 45 VLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 45 l~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+++-.|.|-+= ..||++|.++ |++|+++...
T Consensus 22 ~itN~SSGfiG--s~LA~~L~~~--Ga~V~li~g~ 52 (229)
T PRK09620 22 GHTNMAKGTIG--RIIAEELISK--GAHVIYLHGY 52 (229)
T ss_pred EecCCCcCHHH--HHHHHHHHHC--CCeEEEEeCC
Confidence 44445556555 5789999999 9999999765
No 317
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=25.19 E-value=1.1e+02 Score=26.40 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=29.5
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
||++.-.++. ...-...|.+.|+++ |++|.++.++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~--g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKL--GYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHC--CCEEEEEEChH
Confidence 6777777765 555677999999999 99999999885
No 318
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.06 E-value=99 Score=28.44 Aligned_cols=37 Identities=14% Similarity=-0.040 Sum_probs=32.2
Q ss_pred eEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
||++++. |+.|...-..+||..+++. |++|-+++.+.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~--g~~vLlvd~D~ 38 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQ--GKKVLLVSTDP 38 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHC--CCCceEEeCCC
Confidence 3566665 9999999999999999999 99999998875
No 319
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.97 E-value=1.6e+02 Score=18.60 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.1
Q ss_pred cCCCcCHHHHHHHHHHHhccCcHHHHHHHHH
Q 013878 391 EGIVLTKSGVLQSLELMFSHEGKKMRENVRH 421 (434)
Q Consensus 391 ~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~ 421 (434)
+..-++.+.+.++|.+-|.|+.++.|+.|-+
T Consensus 10 dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 10 DPTLLDSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred CccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3456778899999999888866778887754
No 320
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.92 E-value=1.6e+02 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
..+.+||+|---..+..-|++.|||.+.+.
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 357899999877788999999999998765
No 321
>PRK13604 luxD acyl transferase; Provisional
Probab=24.74 E-value=1.4e+02 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEe
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFF 76 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~ 76 (434)
+...+++.++..++-.-+..+|+.|.++ |+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~--G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSN--GFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHC--CCEEEEe
Confidence 3367888888888877799999999999 9997655
No 322
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.59 E-value=91 Score=27.96 Aligned_cols=35 Identities=6% Similarity=-0.000 Sum_probs=28.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeec
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFST 78 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~ 78 (434)
-|.+.-+|+.|-..-.-.|+++|.++ +|+|.-.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~--i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE--IWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh--hhhccccch
Confidence 34555569999999999999999999 999766544
No 323
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=24.54 E-value=97 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.3
Q ss_pred CccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 146 KISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 146 ~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
.||+|| .|... .-+..-|.++|||.+.++-
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEee
Confidence 577765 78774 5566779999999999874
No 324
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=24.24 E-value=1.8e+02 Score=23.16 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=28.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
++++.++..|+-.-+..+++.|+++ |+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~--G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQ--GYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHT--TEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCEEEEEecC
Confidence 3566777777888899999999999 9998887544
No 325
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=23.98 E-value=1.5e+02 Score=27.27 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCC--cEEEEeecCCcc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPN--LKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~G--h~Vt~~t~~~~~ 82 (434)
+|+++..++. +.|+.++++++.+. | .+|+++......
T Consensus 109 ~vlliagGtG--~aPl~~i~~~~~~~--~~~~~V~~~~G~~~~ 147 (252)
T COG0543 109 PVLLIAGGTG--IAPLYAIAKELKEK--GDANKVTLLYGARTA 147 (252)
T ss_pred cEEEEecccC--HhHHHHHHHHHHhc--CCCceEEEEEeccCh
Confidence 4777776664 78999999999999 9 999999876543
No 326
>PRK07004 replicative DNA helicase; Provisional
Probab=23.96 E-value=4e+02 Score=27.06 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHH-hcCCCcEEEEeecCCccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLA-SAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~-~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
=|++..-|+.|-..=.+.++..++ +. |..|.|+|.+-...++
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSMEMPGTQL 257 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHH
Confidence 355566699999999999999886 45 8999999988544443
No 327
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.94 E-value=1e+02 Score=29.38 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=35.4
Q ss_pred cceEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 342 IGVFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 342 v~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
+.++|+=||-||++.+.+. ++|++.+-.. .+|- .-.++.+++.+++++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF---Lt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF---LTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc---cccCCHHHHHHHHHHHHcC
Confidence 3499999999999999775 7787776421 1111 1224567777888777765
No 328
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=23.94 E-value=9.2e+02 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=28.7
Q ss_pred eEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEee
Q 013878 42 HVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFS 77 (434)
Q Consensus 42 ~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t 77 (434)
.|.+.+. ...|=..-.+.|++.|+++ |++|.++=
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~--G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK--GVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEeC
Confidence 5666655 6689999999999999999 99999874
No 329
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=23.94 E-value=1.1e+02 Score=26.40 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.5
Q ss_pred EEEEcCCCCCcHHH-HHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 43 VAVLAFRFGSHGLT-IFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 43 Ill~~~~~~GHv~P-~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
|+..-.++ ||... .+.+.++|+++. |++|.++.++..
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~-g~eV~vv~S~~A 39 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRY-GDEIDVFLSKAG 39 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhc-CCEEEEEECHhH
Confidence 44444454 78866 889999998542 999999999853
No 330
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=23.81 E-value=1.1e+02 Score=31.68 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=22.3
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
.+||+||.+. +...+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3799999997 45667999999998765
No 331
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.77 E-value=1.6e+02 Score=29.38 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=35.5
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDS 84 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~ 84 (434)
-|+++-.-+.|-..-.-.||+.|+++ |++|-+++.+-|+..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpA 142 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPA 142 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChH
Confidence 46666668889999999999999999 999999999877653
No 332
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.75 E-value=1e+02 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=23.2
Q ss_pred CccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 146 KISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 146 ~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
.||+|| .|... .-+..=|.++|||.+.++-
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEe
Confidence 578776 68774 5566679999999999874
No 333
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.70 E-value=1.8e+02 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred eEEecCCchhHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEE
Q 013878 344 VFVTHCGANSVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKV 390 (434)
Q Consensus 344 ~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 390 (434)
.-++|||+..+.- ..-|-.++|+ +-.+.+++. |.==.|
T Consensus 271 ~~~~HgGYD~~~a---n~D~N~v~Pl-----D~LreL~~E-G~IG~l 308 (349)
T PF07355_consen 271 YMTIHGGYDPAYA---NEDPNRVFPL-----DRLRELEKE-GVIGSL 308 (349)
T ss_pred eEeeccccChhHh---ccCCCeeeeH-----HHHHHHHHc-CCcccc
Confidence 8899999987653 4778889994 566777777 653333
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=23.56 E-value=2e+02 Score=27.34 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN 82 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~ 82 (434)
+|.+.-.|+.|-=.=.=.|+++|.++ ||+|.+++.++..
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~--G~rVaVlAVDPSS 91 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRER--GHRVAVLAVDPSS 91 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHC--CcEEEEEEECCCC
Confidence 67777779999999999999999999 9999999877643
No 335
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=23.53 E-value=62 Score=33.82 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=22.4
Q ss_pred CcceEEecCCch------hHHHHHHcCcccccCC
Q 013878 341 SIGVFVTHCGAN------SVCESIANGVLMICRP 368 (434)
Q Consensus 341 ~v~~~I~HgG~g------s~~eal~~GvP~v~~P 368 (434)
+.+++++|.|-| ++++|...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344888888865 5779999999999883
No 336
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.38 E-value=1.6e+02 Score=27.81 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 38 SSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 38 ~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+|...|.++.=++-|-..-.+.||-.|++. |++|-++=.+
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~--g~kVLliD~D 41 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEM--GQKILIVGCD 41 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEecc
Confidence 333356666448999999999999999999 9999999544
No 337
>PRK14098 glycogen synthase; Provisional
Probab=23.14 E-value=1.4e+02 Score=30.64 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=27.7
Q ss_pred CeEEEEcC------CCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAF------RFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~------~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|+|++++. -+.|=-.-.-.|.++|+++ ||+|.++++.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~--g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEE--GFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHC--CCeEEEEcCC
Confidence 68998864 1233344467899999999 9999999764
No 338
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=23.06 E-value=97 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCcEEEEeecC
Q 013878 58 FNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 58 l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+..|..|+++ |++|+++=..
T Consensus 9 l~aA~~L~~~--g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKA--GYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHT--TSEEEEEESS
T ss_pred HHHHHHHHHC--CCcEEEEecC
Confidence 5678999999 9999998543
No 339
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=2.5e+02 Score=27.29 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc--ccccccccCCCCCCeEEEEcCC
Q 013878 36 QSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN--DSLLSASKSRLPDNIKVYDIED 104 (434)
Q Consensus 36 ~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~--~~~~~~~~~~~~~gi~f~~l~~ 104 (434)
.+.++.|+.++..+--||---|--=|.-|++. |++|.++...... +.+... ++|+++.++.
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~--gf~VdliGy~~s~p~e~l~~h------prI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKL--GFQVDLIGYVESIPLEELLNH------PRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHc--CCeEEEEEecCCCChHHHhcC------CceEEEeCCC
Confidence 45678899999999999999999999999999 9999999865432 233332 3899999973
No 340
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.99 E-value=1.4e+02 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 51 GSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 51 ~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.=.+.-.+-|+..|.++ |++||+.+++.
T Consensus 15 P~qissaiYls~klkkk--gf~v~VaateA 42 (148)
T COG4081 15 PPQISSAIYLSHKLKKK--GFDVTVAATEA 42 (148)
T ss_pred CccchHHHHHHHHhhcc--CccEEEecCHh
Confidence 34566678999999999 99999998873
No 341
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=22.88 E-value=1e+02 Score=30.52 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
.+||++.-.++. ...-.+.|.+.|.+. |++|+++.++..
T Consensus 3 ~k~IllgiTGSi-aa~~~~~ll~~L~~~--g~~V~vv~T~~A 41 (390)
T TIGR00521 3 NKKILLGVTGGI-AAYKTVELVRELVRQ--GAEVKVIMTEAA 41 (390)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHHHhC--CCEEEEEECHhH
Confidence 458888888876 456689999999999 999999998853
No 342
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.88 E-value=1.4e+02 Score=28.26 Aligned_cols=51 Identities=6% Similarity=0.151 Sum_probs=35.1
Q ss_pred ceEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 343 GVFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 343 ~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
.++|+=||-||++.+.+. ++|++.+-... +|- ...++.+++.+++++++++
T Consensus 66 dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF---Lt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 66 DMVISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LGF---LATVSKEEIEETIDELLNG 120 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CCc---ccccCHHHHHHHHHHHHcC
Confidence 399999999999998874 67777664311 111 1234667888888888775
No 343
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.81 E-value=1.3e+02 Score=28.59 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=36.0
Q ss_pred cCCcceEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 339 HFSIGVFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 339 ~~~v~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
.++ ++|+=||-||++.+.+. ++|++.+=.. .+|--- .++.+++.+++++++++
T Consensus 68 ~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~---~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT---QIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee---ccCHHHHHHHHHHHHcC
Confidence 455 99999999999999753 6787776421 122111 24667788888887765
No 344
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.78 E-value=6.1e+02 Score=23.42 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=25.0
Q ss_pred HhHhccCCcceEEe--cCCchhHHH----HHHcCcccccC
Q 013878 334 TQVLGHFSIGVFVT--HCGANSVCE----SIANGVLMICR 367 (434)
Q Consensus 334 ~~lL~~~~v~~~I~--HgG~gs~~e----al~~GvP~v~~ 367 (434)
..+|..-+++++|| .||.|++.| |...|+|+|++
T Consensus 189 ~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 189 KALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 45667778889998 677777665 56678888764
No 345
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.68 E-value=1.9e+02 Score=22.99 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHH---HHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAFRFGSHGLTIF---NLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l---~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|+|++++....|-.+.++ .|.++-+++ ||++.+=+-.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~--G~~i~VE~qg 42 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLE--KWGVKIETQG 42 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 579999998889999998 577777777 9999976643
No 346
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=22.68 E-value=54 Score=26.97 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHHHHhc
Q 013878 49 RFGSHGLTIFNLMLKLASA 67 (434)
Q Consensus 49 ~~~GHv~P~l~La~~L~~r 67 (434)
|..|-.||||+|+-+|+=.
T Consensus 57 pe~G~tNPFLHlsmHLsI~ 75 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSIQ 75 (137)
T ss_pred cccCccchhHHHHHHHHHH
Confidence 7789999999999999855
No 347
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.67 E-value=2.5e+02 Score=27.13 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.7
Q ss_pred CccEEEE-CCCchhHHHHHHHcCCCeEeEcC
Q 013878 146 KISCMLT-DAFLTFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 146 ~pd~vI~-D~~~~~~~~vA~~lgIP~v~~~~ 175 (434)
..|++|+ |. ....+|..+|+|.+.++.
T Consensus 262 ~a~l~v~nDS---Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVDS---APAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecCC---HHHHHHHHcCCCEEEEEC
Confidence 4688885 64 557899999999998875
No 348
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.63 E-value=1.2e+02 Score=30.32 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=22.4
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEcC
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~ 175 (434)
.+||++|.+.. ...+|+++|||.+.++.
T Consensus 369 ~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 369 TEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred hCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 37999999973 45678999999987753
No 349
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=22.58 E-value=2.6e+02 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCcEEEEeecCCc
Q 013878 58 FNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 58 l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
.++|..++++ |++|-++++.+.
T Consensus 3 ~a~a~~~a~~--g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQ--GKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHC--CCeEEEEECCCC
Confidence 3688999999 999999998864
No 350
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.47 E-value=1.5e+02 Score=23.34 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=30.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
++..+.++..|-.-..-++..|.++ |++|.+....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~--G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDN--GFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHC--CCEEEEcCCC
Confidence 5777788888999999999999999 9999988543
No 351
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.41 E-value=1.3e+02 Score=30.98 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.9
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEcC
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~~ 175 (434)
.+||+||.+. ....+|+++|||++.++.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 3799999997 457789999999987653
No 352
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=22.38 E-value=1.3e+02 Score=31.08 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
.+||+||.+. ....+|+++|||++.++
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 3799999887 45678999999998765
No 353
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.27 E-value=1.3e+02 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred ceEEecCCchhHHHHHHc----CcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhcc
Q 013878 343 GVFVTHCGANSVCESIAN----GVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSH 410 (434)
Q Consensus 343 ~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~ 410 (434)
.++|+=||-||++.+.+. ++|++.+-... . |.- ..++++++.+++++++++
T Consensus 65 d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-----------l-GFl-----~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 65 DLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-----------L-GFL-----TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-----------C-Ccc-----cccCHHHHHHHHHHHHcC
Confidence 399999999999999853 56766554311 1 221 124578888888888875
No 354
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=22.17 E-value=2.1e+02 Score=27.65 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcC-CCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 36 QSSSEQHVAVLAF-RFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 36 ~~~~~~~Ill~~~-~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
.+.++.+++.++. ++.|--.-...||..|+++ |++|.++-...
T Consensus 26 ~~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~--g~rVllid~D~ 69 (329)
T cd02033 26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQ--GKRVLLIGCDP 69 (329)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEeee
Confidence 3444556655554 8889999999999999999 99999986653
No 355
>PRK07206 hypothetical protein; Provisional
Probab=22.02 E-value=3.6e+02 Score=26.61 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
+|+++-..+.| ..++++++++ |+++..++...
T Consensus 4 ~~liv~~~~~~-----~~~~~a~~~~--G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSSG-----KFLAPAFKKR--GIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCchH-----HHHHHHHHHc--CCeEEEEEcCC
Confidence 67777764433 4688999999 99988887653
No 356
>PLN02939 transferase, transferring glycosyl groups
Probab=21.98 E-value=1.5e+02 Score=32.98 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCeEEEEcC-----C-CCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAF-----R-FGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~-----~-~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
.|||++++. . +.|=-.-.-.|.++|++. ||+|.++++.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~--GhdV~VIlP~ 524 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK--GHLVEIVLPK 524 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHc--CCeEEEEeCC
Confidence 569999875 2 223334456899999999 9999999874
No 357
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.77 E-value=1.3e+02 Score=26.78 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHhccCCCccEEEECCCc--hhHHHHHHHcCCCeEeEcCch
Q 013878 137 NAAVFETGRKISCMLTDAFL--TFSGEMARDMHIPWLPVFVAM 177 (434)
Q Consensus 137 ~~l~~~~~~~pd~vI~D~~~--~~~~~vA~~lgIP~v~~~~~~ 177 (434)
|.+++. +||+||..... .....-..+.+||++.+....
T Consensus 54 E~i~~l---~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL---KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT-----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC---CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 444443 79999977665 455666778999999987654
No 358
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.74 E-value=1.4e+02 Score=29.91 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~~~~vA~~lgIP~v~~~ 174 (434)
.+||++|.+.. ...+|+++|||++...
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 37999999975 5789999999998664
No 359
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.72 E-value=2e+02 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=22.8
Q ss_pred CccEEEE-CC-CchhHHHHHHHcCCCeEeEc
Q 013878 146 KISCMLT-DA-FLTFSGEMARDMHIPWLPVF 174 (434)
Q Consensus 146 ~pd~vI~-D~-~~~~~~~vA~~lgIP~v~~~ 174 (434)
++|.|++ +. -+..+..+|.++|+|++..-
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 6899984 33 35778999999999998763
No 360
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=21.70 E-value=2.4e+02 Score=25.11 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=32.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 43 VAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 43 Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
+++.--|+.|=-.=.++++...+++ |..|.+++.+...+.+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERI 59 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHH
Confidence 4555558889988888999888888 9999999988654443
No 361
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.54 E-value=1e+02 Score=30.79 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
+.||+++-.+..| +.+++.|... +++||++...++
T Consensus 10 ~~~vVIvGgG~aG-----l~~a~~L~~~--~~~ItlI~~~~~ 44 (424)
T PTZ00318 10 KPNVVVLGTGWAG-----AYFVRNLDPK--KYNITVISPRNH 44 (424)
T ss_pred CCeEEEECCCHHH-----HHHHHHhCcC--CCeEEEEcCCCC
Confidence 5689998776655 4568888766 899999976543
No 362
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.43 E-value=1.1e+02 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
.|+|.++-.+..| ..+|..|+++ ||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~--G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASK--GVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHC--CCeEEEEeCC
Confidence 4589999888877 4678999999 9999998764
No 363
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.36 E-value=1.4e+02 Score=27.23 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=23.2
Q ss_pred HHHHHhccCCCccEEEECCCchh--HHH-HHHHcCCCeEeEcC
Q 013878 136 LNAAVFETGRKISCMLTDAFLTF--SGE-MARDMHIPWLPVFV 175 (434)
Q Consensus 136 l~~l~~~~~~~pd~vI~D~~~~~--~~~-vA~~lgIP~v~~~~ 175 (434)
+|++++. +||+||....... ... +-+.+|||++.+..
T Consensus 67 ~E~i~~l---~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAAL---KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHhc---CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4455443 7999998654332 123 44459999988764
No 364
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.36 E-value=1.8e+02 Score=22.68 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEee
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFS 77 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t 77 (434)
+++++.++.....+...+..+++.+++++|+..|.+--
T Consensus 51 ~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 51 RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 56899999888889999999999999886655555544
No 365
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.20 E-value=1.2e+02 Score=28.04 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCccEEE-ECCCc-hhHHHHHHHcCCCeEeEcC
Q 013878 145 RKISCML-TDAFL-TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 145 ~~pd~vI-~D~~~-~~~~~vA~~lgIP~v~~~~ 175 (434)
..||+|| .|..- ..+..=|.++|||.+.++-
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEee
Confidence 4688876 67664 5566779999999999874
No 366
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=21.08 E-value=1.7e+02 Score=23.19 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=33.7
Q ss_pred HHHHHHHHHccEEEEcCCCcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 013878 376 NARLVEEVWGIGVKVEGIVLTKSGVLQSLELMFSHEGKKMRENVRHLKEIVIE 428 (434)
Q Consensus 376 na~~v~~~~G~G~~l~~~~~~~~~l~~av~~ll~~~~~~~r~~a~~l~~~~~~ 428 (434)
+...+.+.|-++..-..+++|.++|.++|.++.+++ ..+.+-...+-+.+.+
T Consensus 49 d~~al~d~i~~a~~~~~~~~s~~eIe~~ie~~~e~~-~~~~~l~~~vl~el~~ 100 (113)
T PF12363_consen 49 DPVALADIIYAATAHEKKRPSREEIEDYIEDIIEDE-DDIEELFDEVLKELKK 100 (113)
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHh
Confidence 334455666777666566779999999999988773 2254545555444443
No 367
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=21.00 E-value=1.1e+02 Score=24.55 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeecCCcccccc
Q 013878 54 GLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLL 86 (434)
Q Consensus 54 v~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~ 86 (434)
+.|++.+.-.+.-+ ||+++++-+..|...+.
T Consensus 9 Vk~L~eIll~Filr--GHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILR--GHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhc--cCeeEEEChHHHhcccc
Confidence 67899999999999 99999998886665443
No 368
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=20.97 E-value=92 Score=33.69 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=44.5
Q ss_pred ccCCHHhHhc---cCCcceEEe---cCCch-hHHHHHHcCcccccCCCcCChHHHHHHHHHHHccEEEEcCCCcCHHHHH
Q 013878 329 LQAPQTQVLG---HFSIGVFVT---HCGAN-SVCESIANGVLMICRPFFGDHRMNARLVEEVWGIGVKVEGIVLTKSGVL 401 (434)
Q Consensus 329 ~w~pq~~lL~---~~~v~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~l~ 401 (434)
+.+++.++.+ .++ +|+. .-|.| .+.|++++|+|-..+|+..+--.-+. +. .-|+.++.. +.++++
T Consensus 348 ~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l-~~~llv~P~--d~~~la 419 (726)
T PRK14501 348 RSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---EL-AEALLVNPN--DIEGIA 419 (726)
T ss_pred CCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccchhH---Hh-CcCeEECCC--CHHHHH
Confidence 6778776544 466 5554 33554 67799999776333333222111111 22 336666653 789999
Q ss_pred HHHHHHhcc
Q 013878 402 QSLELMFSH 410 (434)
Q Consensus 402 ~av~~ll~~ 410 (434)
++|.++|++
T Consensus 420 ~ai~~~l~~ 428 (726)
T PRK14501 420 AAIKRALEM 428 (726)
T ss_pred HHHHHHHcC
Confidence 999999984
No 369
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=20.96 E-value=3.3e+02 Score=20.88 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=37.3
Q ss_pred eecccccccccccCCCCCCeEEEEcCCCCCc-------HHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 23 FHVRTATSVQEATQSSSEQHVAVLAFRFGSH-------GLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~Ill~~~~~~GH-------v~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
+|++.+.-..+-......+||. +|+++..- ...+-.|..+|+.- +.||.+...+...+.+
T Consensus 23 PyNG~~~~P~Wl~~~~~RpRVc-vT~G~~~~~~~g~~~~~~l~~ll~ala~l--dvEvV~a~~~~~~~~l 89 (97)
T PF06722_consen 23 PYNGPAVVPDWLLEPPGRPRVC-VTLGTSVRMFFGPGGVPLLRRLLEALAGL--DVEVVVALPAAQRAEL 89 (97)
T ss_dssp ---SSEEEEGGGSSSTSSEEEE-EEETHHHCHHHSCHHHCHHHHHHHHHHTS--SSEEEEEETTCCCGGC
T ss_pred CCCCCCCCCcccccCCCCCEEE-EEcCCCccccccccchHHHHHHHHHHhhC--CcEEEEECCHHHHHhh
Confidence 4556655555554445466754 45544332 35888999999988 9999998887544433
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.90 E-value=1e+02 Score=28.83 Aligned_cols=31 Identities=16% Similarity=0.048 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeec
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFST 78 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~ 78 (434)
|+|+++-.++.| ..+|..|+++ ||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~--g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA--GHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC--CCeEEEEEC
Confidence 368888776666 5678889999 999999986
No 371
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.78 E-value=1.6e+02 Score=27.25 Aligned_cols=104 Identities=9% Similarity=-0.010 Sum_probs=55.4
Q ss_pred CCCCcHHHH----HHHHHHHHhcCCCcEEEEeecCCcccc---ccccccCCCCCCeE-EEEcCCC-CCCCCCCCccchHH
Q 013878 49 RFGSHGLTI----FNLMLKLASAAPNLKFSFFSTKKSNDS---LLSASKSRLPDNIK-VYDIEDG-VPMKNASTESNRLE 119 (434)
Q Consensus 49 ~~~GHv~P~----l~La~~L~~r~~Gh~Vt~~t~~~~~~~---~~~~~~~~~~~gi~-f~~l~~~-~~~~~~~~~~~~~~ 119 (434)
....-+||+ +..|..|++++.|.+||.+|..+.... ..+.... -|.. .+-+.|. +. + .++..
T Consensus 29 ~~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLA---mGaD~avli~d~~~~-g-----~D~~~ 99 (256)
T PRK03359 29 KADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS---RGPDELIVVIDDQFE-Q-----ALPQQ 99 (256)
T ss_pred CCccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHH---cCCCEEEEEecCccc-C-----cCHHH
Confidence 444456665 788889998732479999997653311 1111110 0221 1223321 11 1 12222
Q ss_pred HHHHHHHhcchhHHHHHHHHHhccCCCccEEEECCCc------hhHHHHHHHcCCCeEeEcC
Q 013878 120 AVELLQKATPENFKKGLNAAVFETGRKISCMLTDAFL------TFSGEMARDMHIPWLPVFV 175 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~l~~~~~~~pd~vI~D~~~------~~~~~vA~~lgIP~v~~~~ 175 (434)
... .+...++++ .+|+|++-..+ ..+..+|+.||+|++.+..
T Consensus 100 tA~--------~La~ai~~~------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 100 TAS--------ALAAAAQKA------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHH--------HHHHHHHHh------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 111 122333332 59999974332 3577899999999998875
No 372
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.69 E-value=24 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=13.0
Q ss_pred CchhHHHHHHcCccccc
Q 013878 350 GANSVCESIANGVLMIC 366 (434)
Q Consensus 350 G~gs~~eal~~GvP~v~ 366 (434)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888764
No 373
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=20.64 E-value=84 Score=32.85 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=21.9
Q ss_pred CcceEEecCCch------hHHHHHHcCcccccCC
Q 013878 341 SIGVFVTHCGAN------SVCESIANGVLMICRP 368 (434)
Q Consensus 341 ~v~~~I~HgG~g------s~~eal~~GvP~v~~P 368 (434)
+.+++++|.|-| ++++|...++|+|++-
T Consensus 68 ~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 344788887744 6789999999999884
No 374
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=20.63 E-value=1.7e+02 Score=26.61 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKK 80 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~ 80 (434)
..+++++..++. +.|++.+.+++.++ +.+|+++-...
T Consensus 102 ~~~~vlIagG~G--iaP~~s~l~~~~~~--~~~v~l~~~~r 138 (250)
T PRK00054 102 GGKVLLVGGGIG--VAPLYELAKELKKK--GVEVTTVLGAR 138 (250)
T ss_pred CCeEEEEecccc--HHHHHHHHHHHHHc--CCcEEEEEEcC
Confidence 347888887664 89999999999988 88888776543
No 375
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.60 E-value=71 Score=27.27 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcc--ccccccccCCCCCCeEEEEcC
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSN--DSLLSASKSRLPDNIKVYDIE 103 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~--~~~~~~~~~~~~~gi~f~~l~ 103 (434)
..+|.++-++++||.+ |.-|++. |++|++..-+... ++.++. |++..++.
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDS--G~~V~Vglr~~s~s~~~A~~~-------Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDS--GVNVIVGLREGSASWEKAKAD-------GFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHC--C-EEEEEE-TTCHHHHHHHHT-------T-ECCEHH
T ss_pred CCEEEEECCChHHHHH-----HHHHHhC--CCCEEEEecCCCcCHHHHHHC-------CCeeccHH
Confidence 4589999999999965 7789999 9999998776532 233333 77665554
No 376
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=20.45 E-value=93 Score=30.79 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=23.2
Q ss_pred CCcHHHHH---HHHHHHHhcCCCcEEEEeecCCc
Q 013878 51 GSHGLTIF---NLMLKLASAAPNLKFSFFSTKKS 81 (434)
Q Consensus 51 ~GHv~P~l---~La~~L~~r~~Gh~Vt~~t~~~~ 81 (434)
.||+.|++ .+++.++.+ ||+|.|+|..+.
T Consensus 16 lGH~~~~l~ADv~aR~~r~~--G~~v~~~tGtDe 47 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLR--GHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--T-EEEEEEEEE-
T ss_pred CChhHHHHHHHHHHHHHhhc--ccceeeEEecch
Confidence 39999888 589999999 999999997654
No 377
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.43 E-value=1.2e+02 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCccEEEECCCchh-------HHHHHHHcCCCeEeEc
Q 013878 145 RKISCMLTDAFLTF-------SGEMARDMHIPWLPVF 174 (434)
Q Consensus 145 ~~pd~vI~D~~~~~-------~~~vA~~lgIP~v~~~ 174 (434)
..||+|+.|-.-.. |..+.-.+|+|.+-+.
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 47999999966433 4556666778888765
No 378
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=20.35 E-value=6e+02 Score=25.93 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCcccccc
Q 013878 42 HVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSLL 86 (434)
Q Consensus 42 ~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~~ 86 (434)
-+++.-.|+.|--.=.++++.+.+++ |.++.+++.+...+++.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN--KERAILFAYEESRAQLL 307 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCHHHHH
Confidence 45566669999999999999999999 99999999987655443
No 379
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=20.35 E-value=2.3e+02 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=29.0
Q ss_pred CeEEEEcC--CCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAF--RFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~--~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
++++.++. ++.|=-.-...||..|+++ |++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~--G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQA--GYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 34555544 7778888899999999999 9999888554
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=20.34 E-value=1.1e+02 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeec
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFST 78 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~ 78 (434)
|+|+++-.++.|- .+|..|+++ ||+|++++.
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~--g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEA--GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHC--CCceEEEec
Confidence 3688887777763 578899999 999999976
No 381
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=20.27 E-value=5.8e+02 Score=22.16 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 37 SSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 37 ~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
|+++--|-+++..+.|-..--+.+|-+-+.+ |.+|.++=.-
T Consensus 18 ~~~~Gli~VYtGdGKGKTTAAlGlalRAaG~--G~rV~iiQFl 58 (178)
T PRK07414 18 YTIEGLVQVFTSSQRNFFTSVMAQALRIAGQ--GTPVLIVQFL 58 (178)
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHhcC--CCEEEEEEEe
Confidence 3456689999999999999988888888877 9999887543
No 382
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.13 E-value=2.2e+02 Score=23.30 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 39 SEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 39 ~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
++++|++.+.+..+|=.--=-++..|... |++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~--GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADL--GFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhC--CcEEEECCCC
Confidence 36799999999999999988888889988 9999876543
No 383
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=20.08 E-value=5.4e+02 Score=22.16 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 41 QHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 41 ~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
--|-+++..+.|-....+.+|-+-+.+ |.+|.++=.-
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~--G~rV~ivQFl 40 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGH--GMRVLIVQFL 40 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCT--T--EEEEESS
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhC--CCEEEEEEEe
Confidence 368888999999999888888888876 9999887544
No 384
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.04 E-value=1.3e+02 Score=25.35 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecCCccccc
Q 013878 40 EQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTKKSNDSL 85 (434)
Q Consensus 40 ~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~~~~~~~ 85 (434)
..+|+++-.+.-| ...++.|.+. |++||+++.+ ..+.+
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~--ga~V~VIsp~-~~~~l 50 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDT--GAFVTVVSPE-ICKEM 50 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhC--CCEEEEEcCc-cCHHH
Confidence 3478887655443 7789999999 9999999643 34333
No 385
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=20.01 E-value=1.9e+02 Score=30.48 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=38.8
Q ss_pred ccccccccCCCCCCeEEEEcCCCCCcHHHHHHHHHHHHhcCCCcEEEEeecC
Q 013878 28 ATSVQEATQSSSEQHVAVLAFRFGSHGLTIFNLMLKLASAAPNLKFSFFSTK 79 (434)
Q Consensus 28 ~~~~~~~~~~~~~~~Ill~~~~~~GHv~P~l~La~~L~~r~~Gh~Vt~~t~~ 79 (434)
+|||.+.|.|. =|.++-+...|-..=+..|.++|.++ |++|-.+=+.
T Consensus 1 ~~~~~~~~~~~---vi~ivG~s~sGKTTlie~li~~L~~~--G~rVavIKh~ 47 (597)
T PRK14491 1 STPFTNPLSIP---LLGFCAYSGTGKTTLLEQLIPELNQR--GLRLAVIKHA 47 (597)
T ss_pred CCcccCCCCcc---EEEEEcCCCCCHHHHHHHHHHHHHhC--CceEEEEEcC
Confidence 46787777654 56777778999999999999999999 9999888763
Done!