BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013879
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 133/263 (50%), Positives = 173/263 (65%), Gaps = 4/263 (1%)
Query: 42 SSENEDLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
S D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGP
Sbjct: 4 SGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGP 63
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEM 161
GCSSV YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D
Sbjct: 64 GCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 162 LGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYID 221
GD+ TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNP--VIN 180
Query: 222 LKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVA 281
LKG ++GN D+ G ++ W+H +VSD+T++ + C + S S C A
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATD 239
Query: 282 EVLKQYKEIDIYSIYTSVCSSNS 304
+ ID+YS+YT VC+ S
Sbjct: 240 VATAEQGNIDMYSLYTPVCNITS 262
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 172/260 (66%), Gaps = 4/260 (1%)
Query: 42 SSENEDLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
S D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGP
Sbjct: 4 SGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGP 63
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEM 161
GCSSV YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D
Sbjct: 64 GCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 162 LGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYID 221
GD+ TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNP--VIN 180
Query: 222 LKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVA 281
LKG ++GN D+ G ++ W+H +VSD+T++ + C + S S C A
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATD 239
Query: 282 EVLKQYKEIDIYSIYTSVCS 301
+ ID+YS+YT VC+
Sbjct: 240 VATAEQGNIDMYSLYTPVCN 259
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 47 DLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSV 106
D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGPGCSSV
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 107 GYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDF 166
YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D GD+
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 167 TANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYIDLKGIL 226
TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+LKG +
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNP--VINLKGFM 181
Query: 227 LGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVAEVLKQ 286
+GN D+ G ++ W+H +VSD+T++ + C + S S C A +
Sbjct: 182 VGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAE 240
Query: 287 YKEIDIYSIYTSVCS 301
ID+YS+YT VC+
Sbjct: 241 QGNIDMYSLYTPVCN 255
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 47 DLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSV 106
D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGPGCSSV
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 107 GYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDF 166
YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D GD+
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 167 TANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYIDLKGIL 226
TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+LKG +
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNPV--INLKGFM 180
Query: 227 LGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVAEVLKQ 286
+GN D+ G ++ W+H +VSD+T++ + C + S S C A +
Sbjct: 181 VGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAE 239
Query: 287 YKEIDIYSIYTSVCS 301
ID+YS+YT VC+
Sbjct: 240 QGNIDMYSLYTPVCN 254
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 174/262 (66%), Gaps = 7/262 (2%)
Query: 41 LSSENEDLVTNLPGQPN-VDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKP-LVLWLN 98
L + +D + LPGQPN V F Y GYVT++++NGRAL+YWF EA T LVLWLN
Sbjct: 2 LQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLN 61
Query: 99 GGPGCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTND 158
GGPGCSS+G GA QE+G F V T+G L N YAWNK AN+LF ESP GVGFSYSNT++D
Sbjct: 62 GGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSD 121
Query: 159 YEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSL 218
M GDD A D+YTFL KWF +FP Y R FYIAGES G +IP+L+++++ RN++ S
Sbjct: 122 LSM-GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVY-RNRNNSP 177
Query: 219 YIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSD 278
+I+ +G+L+ + T+ ED G+ + W H ++SDET L+ C +S + EC++
Sbjct: 178 FINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCP-GTSFMHPTPECTE 236
Query: 279 AVAEVLKQYKEIDIYSIYTSVC 300
+ L + I+ Y+IYT C
Sbjct: 237 VWNKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/419 (32%), Positives = 212/419 (50%), Gaps = 58/419 (13%)
Query: 43 SENEDLVTNLPG---QPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNG 99
+ ++D + LPG QP+ FR Y+GY+ + L YWF E+ P+ P+VLWLNG
Sbjct: 1 APDQDEIQRLPGLAKQPS--FRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNG 56
Query: 100 GPGCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSN----T 155
GPGCSS+ G E GPFLV DG L++NPY+WN AN+L+LESP GVGFSYS+
Sbjct: 57 GPGCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYA 115
Query: 156 TNDYEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKD 215
TND E+ +F A L +F FP Y+ ++ GESYAG YIP L L+ +D
Sbjct: 116 TNDTEVAQSNFEA------LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QD 166
Query: 216 PSLYIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSD------ETHKIILRTCDFNSSD 269
PS+ +L+G+ +GN +S ++ LV +A+ H ++ + +TH C+F +
Sbjct: 167 PSM--NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK 224
Query: 270 PWSSDECSDAVAEVLKQYKE--IDIYSIYT----SVCSSNSLESSQLLMKRTSKMMPR-- 321
EC + EV + ++IY++Y V S E ++++ + R
Sbjct: 225 DL---ECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLP 281
Query: 322 --------IMGGYD------PCLDNYAKAFY-NRLDVQKALHVSDGHLLRNWSICNTTMY 366
++ D PC + A + Y N V+KAL++ + L W +CN +
Sbjct: 282 LKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQ--LPQWDMCNFLVN 339
Query: 367 EGWPQPKPSVLPIYTKLIEA-GLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPW 424
+ + S+ Y KL+ + +I +Y+GD D + + ++SL + RPW
Sbjct: 340 LQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPW 398
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 152/268 (56%), Gaps = 34/268 (12%)
Query: 45 NEDLVTNLPG---QPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
++D + LPG QP+ FR Y+GY+ + + L YWF E+ P+ P+VLWLNGGP
Sbjct: 5 DQDEIQRLPGLAKQPS--FRQYSGYLKGS--GSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSN----TTN 157
GCSS+ G E GPFLV DG L++NPY+WN AN+L+LESP GVGFSYS+ TN
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN 119
Query: 158 DYEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPS 217
D E+ +F A L +F FP Y+ ++ GESYAG YIP L L+ +DPS
Sbjct: 120 DTEVAQSNFEA------LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QDPS 170
Query: 218 LYIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSD------ETHKIILRTCDFNSSDPW 271
+ +L+G+ +GN +S ++ LV +A+ H ++ + +TH C+F +
Sbjct: 171 M--NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 272 SSDECSDAVAEVLKQYKE--IDIYSIYT 297
EC + EV + ++IY++Y
Sbjct: 229 ---ECVTNLQEVARIVGNSGLNIYNLYA 253
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 188/395 (47%), Gaps = 63/395 (15%)
Query: 56 PNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSVGYGATQEIG 115
PNV Y GY+ V + + + F+W +E+ P + P++LWLNGGPGCSS+ G E+G
Sbjct: 12 PNV--TQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELG 67
Query: 116 PFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDFTANDSYTFL 175
P + D + + NPY+WN A ++FL+ P+ VGFSYS ++ + D Y FL
Sbjct: 68 PSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---AGKDVYNFL 123
Query: 176 HKWFLKFPSY--RRRTFYIAGESYAGRYIPEL-TELIHDRNKDPSLYIDLKGILLGNPET 232
+F +FP Y + + F+IAGESYAG YIP +E++ ++++ +L +L+GN T
Sbjct: 124 ELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLT 179
Query: 233 STAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECS---DAVAEVLKQYKE 289
L Y + + E + + S+ECS D++ L +
Sbjct: 180 DP------LTQYNYYEPMACGEGGEPSVL----------PSEECSAMEDSLERCLGLIES 223
Query: 290 I-DIYSIYTSVCSSNSLESSQLL-MKRTSKMMPRIMG---GYDPC------LDNYAKAFY 338
D S+++ V ++ ++QL +RT + + I G + C +D+Y Y
Sbjct: 224 CYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY 283
Query: 339 NRLDVQKALHVSDGHLLR-NWSICNTTMYEG-WPQPKPSVLPIYTKLIEAGLRIWIYSGD 396
V++A+ H N+ I ++ G W +P + + T L+ L I +Y+GD
Sbjct: 284 ----VKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV---TDLLNQDLPILVYAGD 336
Query: 397 TDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVS 431
D + N LG PW + ++ +
Sbjct: 337 KD---------FICNWLGNKAWTDVLPWKYDEEFA 362
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 186/395 (47%), Gaps = 63/395 (15%)
Query: 56 PNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSVGYGATQEIG 115
PNV Y GY+ V + + + F+W +E+ P + P++LWLNGGPGCSS+ G +G
Sbjct: 12 PNV--TQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALG 67
Query: 116 PFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDFTANDSYTFL 175
P + D + + NPY+WN A ++FL+ P+ VGFSYS ++ + D Y FL
Sbjct: 68 PSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---AGKDVYNFL 123
Query: 176 HKWFLKFPSY--RRRTFYIAGESYAGRYIPEL-TELIHDRNKDPSLYIDLKGILLGNPET 232
+F +FP Y + + F+IAG SYAG YIP +E++ ++++ +L +L+GN T
Sbjct: 124 ELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLT 179
Query: 233 STAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECS---DAVAEVLKQYKE 289
L Y + + E + + S+ECS D++ L +
Sbjct: 180 DP------LTQYNYYEPMACGEGGEPSVL----------PSEECSAMEDSLERCLGLIES 223
Query: 290 I-DIYSIYTSVCSSNSLESSQLL-MKRTSKMMPRIMG---GYDPC------LDNYAKAFY 338
D S+++ V ++ ++QL +RT + + I G + C +D+Y Y
Sbjct: 224 CYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY 283
Query: 339 NRLDVQKALHVSDGHLLR-NWSICNTTMYEG-WPQPKPSVLPIYTKLIEAGLRIWIYSGD 396
V++A+ H N+ I ++ G W +P + + T L+ L I +Y+GD
Sbjct: 284 ----VKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV---TDLLNQDLPILVYAGD 336
Query: 397 TDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVS 431
D + N LG PW + ++ +
Sbjct: 337 KD---------FICNWLGNKAWTDVLPWKYDEEFA 362
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 324 GGYDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTK 382
G YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +
Sbjct: 2 GSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRE 61
Query: 383 LIEAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQV 430
LI AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++V
Sbjct: 62 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEV 109
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQV 430
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEV 107
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQV 430
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEV 107
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQV 430
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEV 107
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 178/390 (45%), Gaps = 63/390 (16%)
Query: 49 VTNLPGQPNVDFRHYAGYVTV-----NEHNGRALFYWFYEAMTRPQ----EKPLVLWLNG 99
++ +P N+ H AG++ + +E + L Y+F++ ++PL++WLNG
Sbjct: 17 LSEVPDPSNIPQMH-AGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNG 75
Query: 100 GPGCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDY 159
GPGCSS+ GA E GPF V++DG+ L N +W + ++LF++ P G GFS ++
Sbjct: 76 GPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEG 133
Query: 160 EMLGDDF------TANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRN 213
++ + F FL +F FP R ++GESYAG+YIP I + N
Sbjct: 134 KIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHN 193
Query: 214 K----DPSLYIDLKGILLGN----PETSTAEDW-----QGLVDYA---WSHAVVSDETHK 257
K D Y DLK +L+GN P T + + L+D + + H + E +
Sbjct: 194 KFSKIDGDTY-DLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQ 252
Query: 258 IILRTCDFNSSDPWSSDECSDAVAEVLKQYKEIDIYSIYTSVCSSNSLESSQLLMKRTSK 317
++ + + + +S EC + + +L S + ESSQ
Sbjct: 253 NLINSASTDEAAHFSYQECENILNLLL-----------------SYTRESSQKGTADCLN 295
Query: 318 MMP-RIMGGYDPCLDNYAK------AFYNRLDVQKALHVSDGHLLRNWSICNTTMYEGWP 370
M + Y C N+ K F++ V +LH+ D + +W C ++
Sbjct: 296 MYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGVIDSLHL-DSDKIDHWKECTNSVGTKLS 354
Query: 371 QP--KPSVLPIYTKLIEAGLRIWIYSGDTD 398
P KPS+ + L+E+G+ I +++GD D
Sbjct: 355 NPISKPSI-HLLPGLLESGIEIVLFNGDKD 383
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + + N +VQ ALH + G + W++C+ T+++ W Q +LP+Y +LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWY 425
+AGLR+W+YSGDTD VPV STR L +L L + SW PWY
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWY 104
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 328 PCLDNYAKAFY-NRLDVQKALHVSDGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLIEA 386
PC + A + Y N V+KAL++ + L W +CN + + + S+ Y KL+ +
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQ--LPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 387 -GLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPW 424
+I +Y+GD D + + ++SL + RPW
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPW 100
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 257 KIILRTCDFNSSDPWSSDECSDAVAEVLKQYKEIDIYSIYTSVCSSNS 304
++I R +N + PW+ D D + V Y+ +S+Y S S NS
Sbjct: 101 ELIERLGGWNITGPWAKDNFQDTLQVVTAHYRTSPFFSVYVSADSKNS 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,565,509
Number of Sequences: 62578
Number of extensions: 672753
Number of successful extensions: 1455
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 22
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)