Query 013881
Match_columns 434
No_of_seqs 1007 out of 2376
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.1E-48 2.4E-53 337.3 29.1 314 103-426 109-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2E-44 4.3E-49 311.0 25.3 285 140-433 105-444 (480)
3 KOG0281 Beta-TrCP (transducin 100.0 3.1E-44 6.6E-49 306.4 18.2 294 89-431 177-480 (499)
4 KOG0272 U4/U6 small nuclear ri 100.0 8.6E-42 1.9E-46 298.3 23.6 273 108-426 174-458 (459)
5 KOG0286 G-protein beta subunit 100.0 9.1E-40 2E-44 273.1 31.7 279 141-426 46-343 (343)
6 KOG0279 G protein beta subunit 100.0 2E-37 4.3E-42 257.6 31.2 277 103-429 9-314 (315)
7 KOG0274 Cdc4 and related F-box 100.0 1.3E-36 2.8E-41 291.3 31.6 282 107-398 206-492 (537)
8 KOG0318 WD40 repeat stress pro 100.0 9.8E-35 2.1E-39 260.7 38.2 319 104-429 185-561 (603)
9 KOG0284 Polyadenylation factor 100.0 1.6E-37 3.5E-42 270.4 16.7 275 106-427 93-379 (464)
10 KOG0291 WD40-repeat-containing 100.0 1.6E-34 3.4E-39 269.4 36.7 322 103-433 139-617 (893)
11 KOG0273 Beta-transducin family 100.0 3.6E-35 7.8E-40 260.2 30.4 313 106-428 175-523 (524)
12 KOG0319 WD40-repeat-containing 100.0 6.9E-36 1.5E-40 278.0 26.8 324 105-433 143-582 (775)
13 KOG0645 WD40 repeat protein [G 100.0 3.3E-34 7.1E-39 237.5 32.5 279 103-428 8-311 (312)
14 KOG0272 U4/U6 small nuclear ri 100.0 9.1E-37 2E-41 266.9 17.1 237 103-386 211-458 (459)
15 KOG0285 Pleiotropic regulator 100.0 5.3E-35 1.1E-39 250.8 26.6 279 103-430 145-441 (460)
16 KOG0285 Pleiotropic regulator 100.0 3.3E-35 7.1E-40 252.1 23.3 245 140-431 141-392 (460)
17 KOG0265 U5 snRNP-specific prot 100.0 2.8E-34 6E-39 241.2 28.0 284 98-426 36-336 (338)
18 KOG0286 G-protein beta subunit 100.0 1.2E-33 2.6E-38 236.5 31.4 274 103-386 49-343 (343)
19 KOG0295 WD40 repeat-containing 100.0 7.9E-35 1.7E-39 250.3 23.2 278 103-427 102-405 (406)
20 KOG0279 G protein beta subunit 100.0 8.7E-34 1.9E-38 236.0 27.6 252 140-434 5-268 (315)
21 KOG0315 G-protein beta subunit 100.0 1.5E-33 3.2E-38 230.9 28.4 268 121-433 12-293 (311)
22 KOG0273 Beta-transducin family 100.0 2.7E-33 5.9E-38 248.3 29.4 269 108-388 234-523 (524)
23 KOG0291 WD40-repeat-containing 100.0 2.1E-32 4.6E-37 255.3 36.4 316 107-430 94-510 (893)
24 KOG0316 Conserved WD40 repeat- 100.0 1.7E-33 3.8E-38 228.6 24.9 276 105-426 13-297 (307)
25 KOG0296 Angio-associated migra 100.0 1.6E-32 3.5E-37 236.3 31.3 313 104-428 59-398 (399)
26 KOG0266 WD40 repeat-containing 100.0 1E-32 2.3E-37 265.2 33.0 279 106-428 156-454 (456)
27 KOG0319 WD40-repeat-containing 100.0 1.9E-32 4.1E-37 255.2 30.7 307 118-430 292-621 (775)
28 KOG0282 mRNA splicing factor [ 100.0 5.2E-34 1.1E-38 253.8 19.1 279 103-426 208-503 (503)
29 KOG0263 Transcription initiati 100.0 4.9E-33 1.1E-37 261.5 26.6 235 110-390 379-651 (707)
30 KOG0263 Transcription initiati 100.0 2.2E-33 4.7E-38 263.9 22.7 272 142-429 370-650 (707)
31 cd00200 WD40 WD40 domain, foun 100.0 2.4E-31 5.2E-36 241.5 34.6 274 106-426 6-289 (289)
32 KOG0293 WD40 repeat-containing 100.0 9.6E-33 2.1E-37 241.0 23.3 282 104-429 219-514 (519)
33 KOG0276 Vesicle coat complex C 100.0 2.3E-32 5.1E-37 250.0 26.0 273 106-424 10-295 (794)
34 KOG0281 Beta-TrCP (transducin 100.0 3.4E-34 7.3E-39 245.0 13.0 243 105-393 233-482 (499)
35 KOG0316 Conserved WD40 repeat- 100.0 2.5E-32 5.4E-37 221.9 22.7 245 141-433 8-262 (307)
36 PLN00181 protein SPA1-RELATED; 100.0 5.3E-31 1.1E-35 271.7 38.6 289 128-427 457-792 (793)
37 KOG0295 WD40 repeat-containing 100.0 1.3E-32 2.7E-37 236.8 20.5 251 141-433 99-369 (406)
38 KOG0305 Anaphase promoting com 100.0 1.6E-31 3.4E-36 247.2 29.0 290 94-429 160-462 (484)
39 KOG0318 WD40 repeat stress pro 100.0 6.3E-30 1.4E-34 229.9 38.1 322 103-432 141-521 (603)
40 KOG0278 Serine/threonine kinas 100.0 1.3E-32 2.8E-37 225.5 17.5 279 104-431 9-300 (334)
41 KOG0296 Angio-associated migra 100.0 3.3E-31 7.2E-36 228.2 26.9 289 141-433 55-361 (399)
42 KOG0306 WD40-repeat-containing 100.0 2E-30 4.3E-35 242.1 31.5 322 103-432 101-584 (888)
43 KOG0313 Microtubule binding pr 100.0 8.7E-31 1.9E-35 226.7 25.3 288 103-428 99-418 (423)
44 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 247.8 25.1 275 111-430 11-323 (1202)
45 KOG0315 G-protein beta subunit 100.0 9.2E-30 2E-34 208.7 26.6 246 110-355 41-302 (311)
46 KOG0284 Polyadenylation factor 100.0 1E-31 2.2E-36 234.4 14.7 237 105-388 134-380 (464)
47 KOG0274 Cdc4 and related F-box 100.0 7.9E-30 1.7E-34 244.6 28.9 271 149-433 207-487 (537)
48 KOG0265 U5 snRNP-specific prot 100.0 4.9E-30 1.1E-34 215.7 21.7 245 141-431 38-299 (338)
49 KOG0276 Vesicle coat complex C 100.0 5.8E-30 1.2E-34 234.4 24.0 248 142-433 5-262 (794)
50 KOG0266 WD40 repeat-containing 100.0 2.8E-29 6.1E-34 241.5 29.7 249 143-432 151-413 (456)
51 KOG0275 Conserved WD40 repeat- 100.0 5.3E-31 1.1E-35 223.7 14.4 273 109-426 213-507 (508)
52 KOG0306 WD40-repeat-containing 100.0 8.7E-29 1.9E-33 231.2 29.8 316 111-432 322-668 (888)
53 KOG0283 WD40 repeat-containing 100.0 2.7E-29 5.9E-34 238.3 24.5 281 141-429 257-577 (712)
54 cd00200 WD40 WD40 domain, foun 100.0 4.5E-28 9.8E-33 219.9 31.5 244 143-432 2-253 (289)
55 KOG0645 WD40 repeat protein [G 100.0 8.1E-28 1.8E-32 199.6 29.7 246 141-430 5-263 (312)
56 KOG0643 Translation initiation 100.0 4.5E-28 9.8E-33 200.7 27.2 280 106-430 7-319 (327)
57 KOG0277 Peroxisomal targeting 100.0 1.6E-29 3.5E-34 207.9 18.0 235 109-387 60-308 (311)
58 PLN00181 protein SPA1-RELATED; 100.0 3.6E-27 7.7E-32 243.3 39.5 276 105-387 479-792 (793)
59 KOG0277 Peroxisomal targeting 100.0 1.3E-28 2.7E-33 202.6 22.7 257 127-427 36-308 (311)
60 KOG0292 Vesicle coat complex C 100.0 4.8E-29 1E-33 236.5 21.8 244 144-431 3-283 (1202)
61 KOG0288 WD40 repeat protein Ti 100.0 1.2E-29 2.7E-34 221.8 16.2 276 105-426 171-459 (459)
62 KOG0275 Conserved WD40 repeat- 100.0 2.1E-29 4.5E-34 214.0 16.5 251 148-434 211-473 (508)
63 KOG1539 WD repeat protein [Gen 100.0 3E-27 6.5E-32 223.4 32.3 315 112-433 162-611 (910)
64 PTZ00420 coronin; Provisional 100.0 4.8E-27 1E-31 226.3 34.3 249 125-411 50-318 (568)
65 PTZ00421 coronin; Provisional 100.0 3.9E-27 8.6E-32 225.8 33.5 258 117-411 30-315 (493)
66 KOG0299 U3 snoRNP-associated p 100.0 6.7E-28 1.5E-32 213.7 25.5 279 102-425 135-453 (479)
67 KOG0300 WD40 repeat-containing 100.0 5.4E-28 1.2E-32 204.9 22.8 311 103-430 142-478 (481)
68 KOG0301 Phospholipase A2-activ 100.0 8.1E-28 1.8E-32 223.0 26.0 275 140-431 4-291 (745)
69 KOG0282 mRNA splicing factor [ 100.0 2.3E-29 5E-34 224.3 14.0 247 141-433 205-467 (503)
70 KOG0313 Microtubule binding pr 100.0 1.5E-27 3.2E-32 206.7 23.6 267 118-431 61-379 (423)
71 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.8E-32 195.2 24.0 276 144-429 14-312 (313)
72 KOG0640 mRNA cleavage stimulat 100.0 1.2E-27 2.5E-32 202.2 21.8 289 103-428 106-426 (430)
73 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-26 1.6E-30 192.3 31.8 283 140-431 4-306 (311)
74 KOG0268 Sof1-like rRNA process 100.0 2.4E-28 5.1E-33 210.4 16.4 279 103-394 60-351 (433)
75 KOG1408 WD40 repeat protein [F 100.0 6.7E-27 1.4E-31 217.4 26.6 313 111-431 262-716 (1080)
76 KOG1036 Mitotic spindle checkp 100.0 3.6E-26 7.8E-31 193.4 27.5 275 149-431 12-319 (323)
77 KOG0310 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 208.6 23.4 274 108-429 25-310 (487)
78 KOG0641 WD40 repeat protein [G 100.0 4.4E-25 9.5E-30 178.9 30.6 277 110-428 33-349 (350)
79 PTZ00421 coronin; Provisional 100.0 9.2E-26 2E-30 216.4 31.2 253 149-433 19-295 (493)
80 KOG0308 Conserved WD40 repeat- 100.0 1.8E-27 3.9E-32 219.2 18.5 268 119-428 36-327 (735)
81 KOG0299 U3 snoRNP-associated p 100.0 7.5E-27 1.6E-31 207.1 21.3 256 143-430 135-412 (479)
82 KOG0289 mRNA splicing factor [ 100.0 5.8E-26 1.3E-30 200.0 26.5 272 110-427 220-505 (506)
83 KOG0772 Uncharacterized conser 100.0 1.3E-26 2.9E-31 208.1 22.5 282 142-426 159-485 (641)
84 KOG1407 WD40 repeat protein [F 100.0 2.1E-25 4.5E-30 184.4 27.0 273 105-388 16-311 (313)
85 KOG0268 Sof1-like rRNA process 100.0 2.7E-27 5.8E-32 204.0 16.3 277 141-429 57-346 (433)
86 KOG0973 Histone transcription 99.9 6.5E-26 1.4E-30 220.8 26.4 298 110-432 14-359 (942)
87 KOG1408 WD40 repeat protein [F 99.9 1.5E-25 3.3E-30 208.4 27.1 223 209-434 345-677 (1080)
88 KOG0647 mRNA export protein (c 99.9 3.4E-25 7.4E-30 186.8 25.6 265 106-416 24-311 (347)
89 KOG0288 WD40 repeat protein Ti 99.9 3.1E-27 6.7E-32 206.8 13.2 247 141-433 166-422 (459)
90 KOG0283 WD40 repeat-containing 99.9 7.8E-26 1.7E-30 215.0 23.7 238 106-390 264-578 (712)
91 KOG0300 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 190.5 19.6 251 140-433 138-433 (481)
92 KOG0264 Nucleosome remodeling 99.9 2.3E-25 5.1E-30 197.6 21.6 250 148-428 122-404 (422)
93 PTZ00420 coronin; Provisional 99.9 9.2E-24 2E-28 203.6 33.7 220 212-432 56-297 (568)
94 KOG0301 Phospholipase A2-activ 99.9 1.1E-24 2.5E-29 202.2 25.5 269 105-389 10-289 (745)
95 KOG0294 WD40 repeat-containing 99.9 2.2E-24 4.9E-29 182.9 24.9 256 122-430 4-283 (362)
96 KOG0647 mRNA export protein (c 99.9 6.8E-25 1.5E-29 185.0 21.0 238 147-429 24-282 (347)
97 KOG1539 WD repeat protein [Gen 99.9 7E-24 1.5E-28 200.8 29.9 311 106-427 199-647 (910)
98 KOG0310 Conserved WD40 repeat- 99.9 8.5E-25 1.8E-29 195.6 22.1 235 150-432 26-272 (487)
99 KOG2106 Uncharacterized conser 99.9 2.4E-23 5.1E-28 186.9 31.3 313 103-430 98-479 (626)
100 KOG0639 Transducin-like enhanc 99.9 2E-24 4.3E-29 193.6 24.2 273 110-428 419-704 (705)
101 KOG0294 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 181.7 23.8 258 105-408 39-306 (362)
102 KOG1332 Vesicle coat complex C 99.9 8.8E-25 1.9E-29 179.1 19.1 245 106-389 8-287 (299)
103 KOG1332 Vesicle coat complex C 99.9 7E-25 1.5E-29 179.7 18.3 248 145-428 6-286 (299)
104 KOG0264 Nucleosome remodeling 99.9 1.8E-24 3.9E-29 192.0 21.0 250 105-388 120-404 (422)
105 KOG0640 mRNA cleavage stimulat 99.9 9.1E-25 2E-29 184.8 18.0 261 143-432 105-387 (430)
106 KOG0641 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 165.7 27.7 263 140-429 23-304 (350)
107 KOG4283 Transcription-coupled 99.9 1E-23 2.2E-28 177.3 22.9 286 98-427 32-364 (397)
108 KOG0293 WD40 repeat-containing 99.9 4.6E-24 1E-28 187.0 21.4 249 141-434 215-476 (519)
109 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 186.7 24.8 280 125-410 13-330 (476)
110 KOG0308 Conserved WD40 repeat- 99.9 2.3E-24 5.1E-29 198.8 20.5 291 105-433 69-398 (735)
111 KOG2106 Uncharacterized conser 99.9 6.3E-22 1.4E-26 177.8 35.4 265 109-387 246-520 (626)
112 KOG0646 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 187.4 23.6 256 168-433 13-312 (476)
113 KOG0643 Translation initiation 99.9 3.3E-23 7.1E-28 172.0 23.2 228 145-418 5-251 (327)
114 KOG2096 WD40 repeat protein [G 99.9 4.2E-23 9.1E-28 175.4 23.9 273 143-426 79-400 (420)
115 KOG0321 WD40 repeat-containing 99.9 2.2E-23 4.7E-28 192.1 23.5 272 121-430 66-393 (720)
116 KOG0278 Serine/threonine kinas 99.9 1.5E-24 3.3E-29 178.3 14.2 241 144-433 8-259 (334)
117 KOG1036 Mitotic spindle checkp 99.9 1.5E-22 3.2E-27 171.6 26.3 264 105-378 9-294 (323)
118 KOG0270 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 185.9 18.8 239 113-395 177-456 (463)
119 KOG1446 Histone H3 (Lys4) meth 99.9 7.8E-22 1.7E-26 168.0 28.0 236 191-433 14-267 (311)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-21 2.3E-26 180.4 31.7 265 121-433 3-284 (300)
121 KOG2048 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 183.5 29.5 278 106-429 22-320 (691)
122 KOG0305 Anaphase promoting com 99.9 1.7E-22 3.6E-27 187.6 23.8 225 200-432 187-423 (484)
123 KOG0289 mRNA splicing factor [ 99.9 3.4E-22 7.3E-27 176.4 24.2 240 105-387 257-505 (506)
124 KOG1273 WD40 repeat protein [G 99.9 3E-22 6.4E-27 170.1 21.4 273 112-429 26-323 (405)
125 KOG1063 RNA polymerase II elon 99.9 5.3E-22 1.2E-26 184.6 24.9 323 103-430 185-650 (764)
126 KOG1063 RNA polymerase II elon 99.9 1.8E-21 3.9E-26 181.1 27.4 306 116-427 21-390 (764)
127 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 186.9 27.7 255 147-411 10-282 (933)
128 KOG2445 Nuclear pore complex c 99.9 1.5E-21 3.4E-26 165.3 24.2 248 147-428 10-318 (361)
129 KOG0650 WD40 repeat nucleolar 99.9 7.3E-22 1.6E-26 180.8 22.9 276 141-425 391-732 (733)
130 KOG2048 WD40 repeat protein [G 99.9 9.6E-20 2.1E-24 169.4 34.8 227 109-340 69-318 (691)
131 KOG2055 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 170.1 24.8 275 109-428 213-512 (514)
132 KOG0302 Ribosome Assembly prot 99.9 1.6E-21 3.4E-26 169.4 20.1 218 126-381 172-432 (440)
133 KOG0269 WD40 repeat-containing 99.9 1.2E-22 2.7E-27 191.0 14.0 237 152-429 89-341 (839)
134 KOG0973 Histone transcription 99.9 1.9E-21 4.1E-26 190.0 22.1 252 149-429 12-313 (942)
135 KOG0267 Microtubule severing p 99.9 4.9E-23 1.1E-27 192.3 9.6 238 130-420 15-260 (825)
136 KOG4328 WD40 protein [Function 99.9 8E-21 1.7E-25 168.9 22.6 284 105-429 182-496 (498)
137 KOG0269 WD40 repeat-containing 99.9 6.1E-22 1.3E-26 186.3 15.3 233 114-389 92-341 (839)
138 KOG0270 WD40 repeat-containing 99.9 3.6E-21 7.8E-26 170.6 18.9 247 161-432 191-453 (463)
139 KOG4328 WD40 protein [Function 99.9 6.5E-21 1.4E-25 169.5 19.9 255 141-433 177-455 (498)
140 KOG0302 Ribosome Assembly prot 99.9 8E-21 1.7E-25 165.1 19.9 255 144-426 145-436 (440)
141 KOG1034 Transcriptional repres 99.9 9.1E-21 2E-25 162.0 18.6 278 146-429 34-384 (385)
142 KOG0321 WD40 repeat-containing 99.9 8.2E-21 1.8E-25 175.2 19.3 277 103-390 94-393 (720)
143 KOG2445 Nuclear pore complex c 99.9 1.6E-19 3.4E-24 153.2 25.4 238 103-341 7-318 (361)
144 KOG4283 Transcription-coupled 99.9 3.1E-20 6.7E-25 156.5 20.8 216 147-392 40-280 (397)
145 KOG0772 Uncharacterized conser 99.9 1.3E-20 2.8E-25 169.9 18.6 205 221-430 159-396 (641)
146 KOG0639 Transducin-like enhanc 99.9 7.6E-21 1.7E-25 170.8 16.6 247 143-431 413-666 (705)
147 KOG0267 Microtubule severing p 99.9 4.9E-22 1.1E-26 185.6 9.0 230 103-379 22-259 (825)
148 KOG1445 Tumor-specific antigen 99.9 2.4E-19 5.1E-24 165.5 24.5 198 230-430 628-846 (1012)
149 KOG4378 Nuclear protein COP1 [ 99.8 8.1E-20 1.8E-24 164.0 18.9 268 121-431 4-283 (673)
150 KOG0322 G-protein beta subunit 99.8 4.4E-20 9.6E-25 153.3 15.7 275 107-427 12-322 (323)
151 KOG1274 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 169.6 24.8 227 196-429 20-263 (933)
152 KOG0307 Vesicle coat complex C 99.8 2.9E-20 6.2E-25 182.6 14.1 239 110-391 65-330 (1049)
153 KOG0307 Vesicle coat complex C 99.8 4.7E-20 1E-24 181.1 14.5 269 126-431 36-330 (1049)
154 KOG1034 Transcriptional repres 99.8 5.1E-19 1.1E-23 151.4 18.4 244 107-388 87-383 (385)
155 KOG0303 Actin-binding protein 99.8 5.2E-19 1.1E-23 154.7 18.7 228 145-410 76-320 (472)
156 KOG0649 WD40 repeat protein [G 99.8 4.8E-18 1E-22 139.7 22.6 243 151-428 11-274 (325)
157 KOG1445 Tumor-specific antigen 99.8 5.8E-19 1.3E-23 163.0 18.8 120 141-260 70-203 (1012)
158 KOG1538 Uncharacterized conser 99.8 1.3E-18 2.8E-23 161.5 20.7 265 111-429 14-294 (1081)
159 KOG1517 Guanine nucleotide bin 99.8 2.5E-18 5.4E-23 167.2 23.4 276 120-432 1077-1385(1387)
160 KOG1188 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 150.0 18.6 262 121-388 42-346 (376)
161 KOG0644 Uncharacterized conser 99.8 6.2E-20 1.3E-24 174.1 11.8 277 105-431 186-471 (1113)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.5E-17 1.4E-21 148.5 30.9 247 112-409 33-300 (300)
163 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 3.1E-20 145.7 40.1 294 126-429 131-443 (466)
164 KOG1009 Chromatin assembly com 99.8 3E-17 6.6E-22 144.3 25.2 296 110-432 14-376 (434)
165 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-18 7E-23 153.9 19.5 251 112-411 37-305 (673)
166 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-15 4.5E-20 144.7 40.4 322 104-432 60-404 (466)
167 KOG0650 WD40 repeat nucleolar 99.8 1.6E-17 3.5E-22 152.7 23.9 270 105-385 396-732 (733)
168 KOG0642 Cell-cycle nuclear pro 99.8 7.4E-19 1.6E-23 160.5 15.1 255 144-431 288-564 (577)
169 KOG2919 Guanine nucleotide-bin 99.8 2.3E-17 5.1E-22 141.0 23.1 257 114-379 54-361 (406)
170 KOG1587 Cytoplasmic dynein int 99.8 3E-17 6.5E-22 157.0 25.8 264 129-429 222-517 (555)
171 KOG0649 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 131.0 25.0 265 121-426 24-314 (325)
172 KOG2110 Uncharacterized conser 99.8 9.4E-16 2E-20 133.6 31.3 231 150-389 5-249 (391)
173 KOG2919 Guanine nucleotide-bin 99.8 1.8E-17 3.9E-22 141.7 20.1 265 153-419 52-361 (406)
174 KOG0303 Actin-binding protein 99.8 1.7E-17 3.6E-22 145.4 19.9 203 224-431 76-297 (472)
175 KOG2096 WD40 repeat protein [G 99.8 3.9E-17 8.4E-22 139.4 21.1 232 105-339 82-400 (420)
176 KOG2055 WD40 repeat protein [G 99.8 4.5E-17 9.8E-22 145.4 21.4 236 150-429 213-468 (514)
177 KOG1963 WD40 repeat protein [G 99.8 8.9E-16 1.9E-20 147.5 31.1 184 120-304 28-284 (792)
178 KOG1273 WD40 repeat protein [G 99.8 9.1E-17 2E-21 137.0 20.1 244 141-433 16-285 (405)
179 KOG1334 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 148.0 15.3 289 140-431 132-469 (559)
180 KOG1240 Protein kinase contain 99.7 5.5E-16 1.2E-20 153.4 25.3 289 134-426 1034-1431(1431)
181 KOG0290 Conserved WD40 repeat- 99.7 6.7E-16 1.5E-20 130.3 20.8 217 210-430 73-320 (364)
182 KOG1007 WD repeat protein TSSC 99.7 4.9E-16 1.1E-20 131.1 19.9 208 130-341 94-361 (370)
183 KOG1007 WD repeat protein TSSC 99.7 6.5E-16 1.4E-20 130.3 20.3 281 127-428 38-361 (370)
184 KOG0642 Cell-cycle nuclear pro 99.7 6.7E-17 1.4E-21 147.8 14.9 253 106-395 291-568 (577)
185 KOG1517 Guanine nucleotide bin 99.7 9.6E-16 2.1E-20 149.6 23.5 244 152-432 1066-1337(1387)
186 KOG0290 Conserved WD40 repeat- 99.7 5.6E-16 1.2E-20 130.8 18.7 238 107-384 94-361 (364)
187 KOG0644 Uncharacterized conser 99.7 4.7E-18 1E-22 161.6 6.5 239 140-432 180-430 (1113)
188 KOG1188 WD40 repeat protein [G 99.7 3.6E-16 7.9E-21 134.8 16.7 187 240-432 41-246 (376)
189 KOG4227 WD40 repeat protein [G 99.7 1.8E-15 4E-20 132.6 21.0 281 143-428 49-387 (609)
190 KOG1587 Cytoplasmic dynein int 99.7 1.9E-15 4.1E-20 144.8 22.4 251 109-389 242-517 (555)
191 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 3E-21 145.2 13.9 238 141-432 41-307 (758)
192 PF02239 Cytochrom_D1: Cytochr 99.7 9.7E-14 2.1E-18 129.4 31.6 300 124-433 11-352 (369)
193 PRK11028 6-phosphogluconolacto 99.7 9.8E-14 2.1E-18 129.3 31.1 263 124-428 7-304 (330)
194 KOG1523 Actin-related protein 99.7 9.2E-15 2E-19 125.2 20.9 201 109-344 10-239 (361)
195 KOG1538 Uncharacterized conser 99.7 1.8E-14 3.8E-19 134.5 23.3 320 103-433 47-491 (1081)
196 KOG1272 WD40-repeat-containing 99.7 6E-16 1.3E-20 138.4 12.3 257 151-420 130-401 (545)
197 KOG2111 Uncharacterized conser 99.7 4.1E-13 8.9E-18 115.2 28.8 230 152-389 7-257 (346)
198 KOG2321 WD40 repeat protein [G 99.7 2.9E-14 6.3E-19 131.0 23.0 272 148-428 49-343 (703)
199 KOG1524 WD40 repeat-containing 99.7 7.1E-15 1.5E-19 133.8 18.4 252 148-425 12-283 (737)
200 KOG1963 WD40 repeat protein [G 99.7 1.3E-13 2.8E-18 132.9 26.8 327 103-433 199-588 (792)
201 TIGR03300 assembly_YfgL outer 99.6 8.5E-13 1.8E-17 125.3 31.5 298 117-425 63-376 (377)
202 KOG4227 WD40 repeat protein [G 99.6 8.9E-14 1.9E-18 122.2 22.1 281 103-388 50-387 (609)
203 KOG2110 Uncharacterized conser 99.6 1E-11 2.2E-16 108.8 30.8 225 110-342 6-249 (391)
204 KOG2111 Uncharacterized conser 99.6 4.9E-12 1.1E-16 108.7 27.8 231 111-344 7-259 (346)
205 KOG1524 WD40 repeat-containing 99.6 1.2E-13 2.7E-18 125.9 15.6 203 120-385 76-283 (737)
206 KOG1272 WD40-repeat-containing 99.5 4.8E-14 1E-18 126.4 12.0 260 113-384 133-405 (545)
207 KOG3881 Uncharacterized conser 99.5 1.1E-12 2.4E-17 115.4 20.1 249 149-433 54-325 (412)
208 KOG1009 Chromatin assembly com 99.5 1.2E-13 2.6E-18 121.9 14.1 166 150-343 13-197 (434)
209 KOG0771 Prolactin regulatory e 99.5 2E-13 4.4E-18 121.2 15.3 193 113-342 148-355 (398)
210 KOG1334 WD40 repeat protein [G 99.5 1E-13 2.2E-18 125.0 13.3 281 104-389 137-467 (559)
211 PRK01742 tolB translocation pr 99.5 1.1E-12 2.4E-17 126.2 21.0 228 128-366 183-426 (429)
212 KOG0322 G-protein beta subunit 99.5 6.3E-13 1.4E-17 111.1 15.6 248 107-387 54-322 (323)
213 KOG0974 WD-repeat protein WDR6 99.5 3.2E-12 6.9E-17 125.5 19.0 265 108-389 6-289 (967)
214 KOG0771 Prolactin regulatory e 99.5 1.1E-12 2.5E-17 116.6 14.4 189 233-429 148-355 (398)
215 TIGR03300 assembly_YfgL outer 99.5 8.7E-11 1.9E-15 111.6 28.3 259 161-433 64-343 (377)
216 KOG1523 Actin-related protein 99.5 9.1E-12 2E-16 107.1 18.4 200 227-430 8-238 (361)
217 KOG0974 WD-repeat protein WDR6 99.5 6.2E-12 1.3E-16 123.6 19.6 264 151-430 8-290 (967)
218 KOG2394 WD40 protein DMR-N9 [G 99.5 6.2E-13 1.3E-17 121.5 11.6 135 108-283 218-384 (636)
219 PRK11138 outer membrane biogen 99.4 4.3E-10 9.2E-15 107.3 31.3 301 117-427 67-393 (394)
220 KOG3881 Uncharacterized conser 99.4 9.7E-12 2.1E-16 109.6 17.5 212 108-351 104-330 (412)
221 PRK11028 6-phosphogluconolacto 99.4 4.2E-10 9.1E-15 104.9 29.2 238 111-388 36-304 (330)
222 KOG2394 WD40 protein DMR-N9 [G 99.4 1E-11 2.2E-16 113.7 17.4 185 241-432 187-456 (636)
223 KOG1240 Protein kinase contain 99.4 1.5E-11 3.2E-16 122.7 19.1 214 215-431 1034-1276(1431)
224 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.8E-09 8.3E-14 96.6 32.8 263 129-433 27-335 (352)
225 KOG1310 WD40 repeat protein [G 99.4 5.1E-12 1.1E-16 115.8 13.9 171 103-301 44-231 (758)
226 KOG1409 Uncharacterized conser 99.4 2.8E-11 6.1E-16 105.1 16.8 308 118-429 35-395 (404)
227 PRK01742 tolB translocation pr 99.4 6E-11 1.3E-15 114.2 20.9 204 210-428 184-401 (429)
228 KOG4497 Uncharacterized conser 99.4 2.4E-10 5.2E-15 98.8 20.2 293 110-421 49-425 (447)
229 KOG4497 Uncharacterized conser 99.3 1.8E-10 3.8E-15 99.6 18.8 266 156-429 14-392 (447)
230 KOG2315 Predicted translation 99.3 5.3E-09 1.2E-13 96.8 27.8 305 112-430 37-392 (566)
231 PF02239 Cytochrom_D1: Cytochr 99.3 8.5E-10 1.8E-14 103.1 23.1 273 115-397 42-356 (369)
232 PRK04922 tolB translocation pr 99.3 8.1E-10 1.7E-14 106.6 23.6 227 129-409 184-432 (433)
233 PRK03629 tolB translocation pr 99.3 1.7E-09 3.8E-14 103.9 25.2 228 129-410 179-428 (429)
234 KOG2321 WD40 repeat protein [G 99.3 1.6E-09 3.4E-14 100.4 23.3 273 111-392 53-347 (703)
235 KOG2139 WD40 repeat protein [G 99.3 1.3E-09 2.8E-14 95.5 21.5 238 150-430 98-385 (445)
236 KOG0280 Uncharacterized conser 99.3 8.3E-10 1.8E-14 94.1 19.7 194 233-432 125-337 (339)
237 KOG1354 Serine/threonine prote 99.3 1.3E-09 2.8E-14 94.9 20.3 269 106-390 22-361 (433)
238 KOG1409 Uncharacterized conser 99.3 2.6E-10 5.6E-15 99.2 15.9 253 141-433 15-275 (404)
239 PRK05137 tolB translocation pr 99.3 3.6E-09 7.7E-14 102.3 25.2 227 129-409 182-432 (435)
240 KOG4547 WD40 repeat-containing 99.3 1.6E-09 3.4E-14 100.9 21.3 178 159-342 2-221 (541)
241 KOG1912 WD40 repeat protein [G 99.3 1.3E-08 2.9E-13 97.6 27.9 287 101-391 47-554 (1062)
242 PRK02889 tolB translocation pr 99.2 3.4E-09 7.4E-14 102.0 23.6 229 129-409 176-424 (427)
243 PRK11138 outer membrane biogen 99.2 1.9E-08 4.1E-13 96.1 27.2 259 161-433 68-358 (394)
244 PRK05137 tolB translocation pr 99.2 1.1E-08 2.3E-13 99.0 25.8 208 211-431 183-415 (435)
245 KOG1064 RAVE (regulator of V-A 99.2 2.1E-10 4.5E-15 118.5 13.9 216 148-421 2206-2439(2439)
246 KOG0280 Uncharacterized conser 99.2 3.7E-09 7.9E-14 90.3 18.5 187 241-430 87-286 (339)
247 PF13360 PQQ_2: PQQ-like domai 99.2 4.2E-08 9.2E-13 86.8 26.7 211 128-346 2-235 (238)
248 KOG1064 RAVE (regulator of V-A 99.2 2E-10 4.3E-15 118.7 12.5 191 224-431 2203-2401(2439)
249 KOG2139 WD40 repeat protein [G 99.2 3.8E-09 8.2E-14 92.7 18.5 184 229-423 98-306 (445)
250 KOG1354 Serine/threonine prote 99.2 2.4E-09 5.1E-14 93.3 16.9 254 150-432 25-363 (433)
251 PF08662 eIF2A: Eukaryotic tra 99.2 3.9E-09 8.4E-14 89.6 18.1 128 294-430 38-181 (194)
252 KOG1275 PAB-dependent poly(A) 99.2 2.6E-10 5.7E-15 110.8 11.3 181 237-426 145-340 (1118)
253 PRK04922 tolB translocation pr 99.1 1.9E-08 4E-13 97.2 23.8 207 211-430 185-413 (433)
254 PF13360 PQQ_2: PQQ-like domai 99.1 7E-08 1.5E-12 85.4 24.9 189 238-433 35-235 (238)
255 PRK03629 tolB translocation pr 99.1 1.7E-08 3.6E-13 97.2 22.0 209 108-323 197-427 (429)
256 TIGR02800 propeller_TolB tol-p 99.1 4.6E-08 1E-12 94.3 25.1 208 128-388 169-397 (417)
257 COG5354 Uncharacterized protei 99.1 1.2E-07 2.5E-12 87.1 25.5 305 110-431 33-398 (561)
258 KOG0309 Conserved WD40 repeat- 99.1 1.5E-09 3.2E-14 103.4 13.3 274 150-429 24-340 (1081)
259 PRK02889 tolB translocation pr 99.1 1.2E-07 2.7E-12 91.3 26.8 216 200-427 163-402 (427)
260 KOG4190 Uncharacterized conser 99.0 9.3E-10 2E-14 101.4 9.1 271 105-384 731-1032(1034)
261 KOG1912 WD40 repeat protein [G 99.0 5.5E-08 1.2E-12 93.5 20.8 228 114-342 20-305 (1062)
262 PF10282 Lactonase: Lactonase, 99.0 7.7E-06 1.7E-10 76.5 35.3 266 129-432 13-328 (345)
263 TIGR02800 propeller_TolB tol-p 99.0 2.4E-07 5.2E-12 89.4 25.6 205 211-428 171-397 (417)
264 KOG2314 Translation initiation 99.0 1.9E-07 4.2E-12 86.5 22.8 307 111-429 212-574 (698)
265 KOG4532 WD40-like repeat conta 99.0 1.3E-07 2.9E-12 79.9 19.7 185 241-431 86-285 (344)
266 PF08662 eIF2A: Eukaryotic tra 99.0 3.1E-08 6.7E-13 84.1 16.4 132 131-309 39-186 (194)
267 PRK00178 tolB translocation pr 99.0 3.9E-07 8.5E-12 88.2 25.4 226 130-409 180-427 (430)
268 KOG4547 WD40 repeat-containing 99.0 6.6E-08 1.4E-12 90.3 18.7 139 284-429 71-221 (541)
269 KOG3914 WD repeat protein WDR4 99.0 6.3E-08 1.4E-12 86.4 17.4 154 154-310 66-232 (390)
270 KOG4190 Uncharacterized conser 98.9 1.4E-09 3.1E-14 100.2 6.9 167 266-433 728-911 (1034)
271 KOG1645 RING-finger-containing 98.9 6.2E-08 1.4E-12 86.4 16.7 252 131-429 175-462 (463)
272 KOG4714 Nucleoporin [Nuclear s 98.9 1.3E-08 2.8E-13 85.6 11.7 224 112-339 39-316 (319)
273 PF04762 IKI3: IKI3 family; I 98.9 3.8E-06 8.2E-11 87.4 30.9 305 110-430 76-458 (928)
274 PF00400 WD40: WD domain, G-be 98.9 7.3E-09 1.6E-13 62.9 6.4 38 141-178 2-39 (39)
275 cd00216 PQQ_DH Dehydrogenases 98.9 3.7E-06 8E-11 82.4 28.3 290 117-416 59-456 (488)
276 KOG2066 Vacuolar assembly/sort 98.9 1.8E-07 3.9E-12 90.5 17.7 183 108-341 38-233 (846)
277 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.2E-05 2.7E-10 73.8 28.7 222 125-349 73-338 (352)
278 KOG2695 WD40 repeat protein [G 98.8 8.8E-09 1.9E-13 89.9 7.6 147 203-350 227-385 (425)
279 PRK04792 tolB translocation pr 98.8 1.1E-06 2.3E-11 85.1 22.4 205 130-340 199-424 (448)
280 COG5354 Uncharacterized protei 98.8 5.8E-06 1.3E-10 76.3 24.3 288 132-430 15-350 (561)
281 KOG2695 WD40 repeat protein [G 98.8 2.7E-08 5.9E-13 86.9 8.5 157 243-409 228-402 (425)
282 PRK00178 tolB translocation pr 98.8 3.7E-06 8E-11 81.4 24.4 206 211-429 180-407 (430)
283 KOG4532 WD40-like repeat conta 98.8 2.7E-06 5.8E-11 72.2 19.8 249 130-429 53-332 (344)
284 KOG2041 WD40 repeat protein [G 98.8 8.3E-07 1.8E-11 84.9 18.2 270 110-427 15-336 (1189)
285 KOG2315 Predicted translation 98.7 1.9E-06 4.1E-11 80.3 19.9 221 113-342 129-391 (566)
286 PF10282 Lactonase: Lactonase, 98.7 0.00017 3.8E-09 67.4 33.6 215 127-341 60-322 (345)
287 KOG0882 Cyclophilin-related pe 98.7 2.4E-07 5.3E-12 83.8 13.4 259 107-433 7-310 (558)
288 cd00216 PQQ_DH Dehydrogenases 98.7 1.8E-05 3.9E-10 77.5 27.9 261 162-433 61-429 (488)
289 KOG0309 Conserved WD40 repeat- 98.7 7.3E-08 1.6E-12 92.1 10.5 209 131-342 93-340 (1081)
290 KOG4714 Nucleoporin [Nuclear s 98.7 9E-08 1.9E-12 80.6 9.8 194 232-429 39-255 (319)
291 COG2706 3-carboxymuconate cycl 98.7 0.00014 3E-09 64.8 29.7 258 128-389 15-322 (346)
292 PRK01029 tolB translocation pr 98.7 5.6E-06 1.2E-10 79.5 23.2 214 211-432 166-407 (428)
293 COG4946 Uncharacterized protei 98.7 0.00026 5.7E-09 65.1 31.1 183 118-308 276-484 (668)
294 PRK01029 tolB translocation pr 98.7 1.3E-05 2.8E-10 77.1 24.3 235 129-410 165-425 (428)
295 KOG2041 WD40 repeat protein [G 98.7 7.2E-07 1.6E-11 85.3 15.0 244 150-419 14-279 (1189)
296 PLN02919 haloacid dehalogenase 98.7 4.6E-05 9.9E-10 81.1 30.0 223 201-432 580-892 (1057)
297 PF15492 Nbas_N: Neuroblastoma 98.7 3.1E-05 6.7E-10 66.8 23.3 233 118-398 7-269 (282)
298 KOG1275 PAB-dependent poly(A) 98.7 5.3E-07 1.1E-11 88.4 14.1 179 200-386 147-340 (1118)
299 KOG2314 Translation initiation 98.6 1.4E-05 3.1E-10 74.5 22.1 267 152-429 212-526 (698)
300 PF04762 IKI3: IKI3 family; I 98.6 8.4E-05 1.8E-09 77.7 29.7 221 200-427 87-378 (928)
301 KOG0882 Cyclophilin-related pe 98.6 4.7E-07 1E-11 82.0 11.3 203 227-433 7-236 (558)
302 KOG3914 WD repeat protein WDR4 98.6 8.6E-07 1.9E-11 79.3 12.8 144 283-433 74-228 (390)
303 KOG4649 PQQ (pyrrolo-quinoline 98.6 4.4E-05 9.5E-10 64.9 22.2 267 111-390 54-353 (354)
304 PF06433 Me-amine-dh_H: Methyl 98.6 0.00028 6.1E-09 63.6 28.6 262 129-398 17-330 (342)
305 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00029 6.3E-09 60.0 27.2 294 120-430 24-353 (354)
306 COG5170 CDC55 Serine/threonine 98.6 1.7E-06 3.8E-11 74.8 13.6 234 149-387 25-366 (460)
307 PRK04792 tolB translocation pr 98.6 5.7E-05 1.2E-09 73.2 25.2 224 173-409 199-446 (448)
308 PLN02919 haloacid dehalogenase 98.5 0.00021 4.5E-09 76.2 30.7 233 155-392 572-892 (1057)
309 COG5170 CDC55 Serine/threonine 98.5 5.2E-06 1.1E-10 72.0 14.0 201 228-431 25-312 (460)
310 KOG2066 Vacuolar assembly/sort 98.4 5.6E-06 1.2E-10 80.5 14.7 182 229-429 39-234 (846)
311 PF15492 Nbas_N: Neuroblastoma 98.4 0.00031 6.6E-09 60.8 23.5 191 227-431 41-262 (282)
312 KOG3621 WD40 repeat-containing 98.4 2.8E-05 6.2E-10 74.8 17.7 160 111-302 37-198 (726)
313 PF00780 CNH: CNH domain; Int 98.4 0.00045 9.7E-09 62.5 25.2 226 114-350 2-264 (275)
314 PF11768 DUF3312: Protein of u 98.3 0.0021 4.5E-08 61.4 28.9 92 336-431 239-332 (545)
315 COG4946 Uncharacterized protei 98.3 0.00036 7.8E-09 64.3 22.2 203 196-411 273-500 (668)
316 PF03178 CPSF_A: CPSF A subuni 98.3 0.00049 1.1E-08 63.8 24.1 171 249-424 62-261 (321)
317 KOG1832 HIV-1 Vpr-binding prot 98.3 1.2E-06 2.6E-11 85.8 6.6 269 89-415 1078-1376(1516)
318 PF08596 Lgl_C: Lethal giant l 98.3 0.00014 3E-09 68.5 20.2 267 152-427 3-334 (395)
319 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0014 2.9E-08 64.8 27.8 185 162-346 69-338 (527)
320 PF00400 WD40: WD domain, G-be 98.3 4E-06 8.7E-11 50.6 6.0 37 303-339 1-39 (39)
321 KOG2114 Vacuolar assembly/sort 98.2 0.00034 7.4E-09 69.1 21.5 211 111-348 27-250 (933)
322 PF08450 SGL: SMP-30/Gluconola 98.2 0.0037 8E-08 55.5 30.0 201 114-322 4-233 (246)
323 PF06433 Me-amine-dh_H: Methyl 98.2 0.00086 1.9E-08 60.5 21.9 255 172-433 17-325 (342)
324 PF08450 SGL: SMP-30/Gluconola 98.1 0.0053 1.2E-07 54.5 28.9 176 232-416 42-244 (246)
325 PRK04043 tolB translocation pr 98.1 0.0031 6.7E-08 60.5 25.6 192 129-330 169-386 (419)
326 KOG1920 IkappaB kinase complex 98.1 0.0012 2.6E-08 67.8 22.6 273 110-427 69-364 (1265)
327 COG2706 3-carboxymuconate cycl 98.1 0.0077 1.7E-07 54.0 24.9 203 224-429 34-275 (346)
328 PF00780 CNH: CNH domain; Int 98.0 0.0088 1.9E-07 54.0 26.7 226 160-398 5-265 (275)
329 PF03178 CPSF_A: CPSF A subuni 98.0 0.0093 2E-07 55.3 26.3 208 129-338 2-262 (321)
330 KOG1832 HIV-1 Vpr-binding prot 98.0 6.4E-06 1.4E-10 80.9 4.9 187 224-431 1096-1294(1516)
331 PRK04043 tolB translocation pr 97.9 0.012 2.6E-07 56.4 26.0 203 211-429 170-401 (419)
332 PF08596 Lgl_C: Lethal giant l 97.9 0.0054 1.2E-07 58.0 22.9 166 264-429 77-291 (395)
333 PF07433 DUF1513: Protein of u 97.9 0.01 2.2E-07 53.1 22.8 206 130-338 29-282 (305)
334 KOG1920 IkappaB kinase complex 97.9 0.0063 1.4E-07 62.8 23.8 230 193-429 70-323 (1265)
335 KOG1645 RING-finger-containing 97.9 0.0023 5E-08 58.0 18.1 232 104-340 188-460 (463)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.037 8E-07 54.8 31.8 183 118-306 68-338 (527)
337 KOG2114 Vacuolar assembly/sort 97.8 0.0011 2.4E-08 65.6 16.6 190 231-429 27-244 (933)
338 smart00320 WD40 WD40 repeats. 97.8 7.5E-05 1.6E-09 44.0 5.4 38 141-178 3-40 (40)
339 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.002 4.4E-08 48.0 13.1 90 324-424 16-110 (111)
340 PF07433 DUF1513: Protein of u 97.7 0.028 6E-07 50.4 22.5 194 232-433 7-252 (305)
341 KOG3617 WD40 and TPR repeat-co 97.7 0.0007 1.5E-08 66.8 13.4 69 112-181 62-132 (1416)
342 PF08553 VID27: VID27 cytoplas 97.7 0.0009 1.9E-08 67.7 14.6 137 287-428 498-647 (794)
343 PRK02888 nitrous-oxide reducta 97.7 0.027 5.8E-07 55.4 23.5 100 323-429 288-405 (635)
344 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.008 1.7E-07 44.9 15.0 93 284-384 16-110 (111)
345 PF11768 DUF3312: Protein of u 97.6 0.0014 3.1E-08 62.4 12.9 74 148-260 257-332 (545)
346 KOG1008 Uncharacterized conser 97.6 2.3E-05 5E-10 74.5 1.0 192 111-342 58-276 (783)
347 PF04053 Coatomer_WDAD: Coatom 97.5 0.052 1.1E-06 52.2 22.5 222 146-389 28-263 (443)
348 PHA02713 hypothetical protein; 97.5 0.015 3.3E-07 58.0 19.7 213 211-431 273-536 (557)
349 KOG3621 WD40 repeat-containing 97.5 0.00058 1.3E-08 66.1 9.1 110 316-429 38-155 (726)
350 KOG1008 Uncharacterized conser 97.4 7.3E-05 1.6E-09 71.3 2.1 193 229-429 56-276 (783)
351 KOG2444 WD40 repeat protein [G 97.4 0.00034 7.4E-09 58.6 5.2 141 285-429 32-178 (238)
352 PF04053 Coatomer_WDAD: Coatom 97.3 0.13 2.7E-06 49.6 22.4 213 112-340 35-261 (443)
353 PF04841 Vps16_N: Vps16, N-ter 97.2 0.24 5.2E-06 47.5 24.5 191 211-411 62-271 (410)
354 PHA02713 hypothetical protein; 97.1 0.05 1.1E-06 54.4 18.9 212 129-344 272-536 (557)
355 COG5276 Uncharacterized conser 97.0 0.2 4.3E-06 44.1 27.9 268 150-428 86-369 (370)
356 KOG4441 Proteins containing BT 97.0 0.057 1.2E-06 54.0 17.8 191 232-430 325-548 (571)
357 KOG4640 Anaphase-promoting com 96.9 0.0067 1.4E-07 58.3 9.5 75 111-187 22-99 (665)
358 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0039 8.4E-08 38.8 5.5 35 397-432 9-44 (47)
359 COG3204 Uncharacterized protei 96.9 0.28 6.1E-06 43.3 19.4 190 111-301 45-263 (316)
360 KOG2079 Vacuolar assembly/sort 96.9 0.079 1.7E-06 54.5 17.3 81 111-191 91-171 (1206)
361 KOG2444 WD40 repeat protein [G 96.9 0.0028 6E-08 53.3 6.1 101 239-342 70-178 (238)
362 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.42 9.2E-06 44.9 22.4 256 159-427 1-312 (353)
363 PF06977 SdiA-regulated: SdiA- 96.8 0.32 7E-06 42.8 22.4 193 224-425 16-247 (248)
364 PF04841 Vps16_N: Vps16, N-ter 96.8 0.53 1.2E-05 45.1 26.0 181 130-324 62-270 (410)
365 KOG4640 Anaphase-promoting com 96.8 0.0048 1E-07 59.3 7.5 73 357-433 22-97 (665)
366 TIGR03074 PQQ_membr_DH membran 96.8 0.73 1.6E-05 47.6 23.6 221 118-348 193-484 (764)
367 PRK02888 nitrous-oxide reducta 96.8 0.24 5.2E-06 48.9 19.1 171 127-302 213-405 (635)
368 KOG2395 Protein involved in va 96.7 0.042 9.1E-07 52.0 13.1 136 285-427 348-499 (644)
369 TIGR03074 PQQ_membr_DH membran 96.7 0.31 6.6E-06 50.3 20.4 225 162-396 194-485 (764)
370 smart00320 WD40 WD40 repeats. 96.7 0.0062 1.3E-07 35.2 5.2 36 304-339 3-40 (40)
371 PF02897 Peptidase_S9_N: Proly 96.6 0.7 1.5E-05 44.5 28.1 239 152-432 125-408 (414)
372 COG5276 Uncharacterized conser 96.6 0.49 1.1E-05 41.8 26.7 158 227-391 84-244 (370)
373 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0093 2E-07 37.1 5.3 34 150-184 11-44 (47)
374 KOG1897 Damage-specific DNA bi 96.5 1.3 2.8E-05 45.7 30.0 301 122-430 272-615 (1096)
375 PF08553 VID27: VID27 cytoplas 96.4 0.11 2.4E-06 53.0 14.6 135 161-300 492-646 (794)
376 PF14727 PHTB1_N: PTHB1 N-term 96.4 0.28 6.1E-06 46.6 16.5 144 284-428 38-204 (418)
377 KOG1897 Damage-specific DNA bi 96.3 1.7 3.7E-05 44.9 31.1 313 107-431 528-901 (1096)
378 PF06977 SdiA-regulated: SdiA- 96.2 0.76 1.7E-05 40.5 23.3 200 144-385 15-247 (248)
379 KOG3617 WD40 and TPR repeat-co 96.2 0.043 9.4E-07 54.8 10.5 106 234-345 20-135 (1416)
380 KOG2079 Vacuolar assembly/sort 96.2 0.031 6.7E-07 57.3 9.6 109 227-340 87-202 (1206)
381 KOG2395 Protein involved in va 96.2 0.3 6.5E-06 46.6 15.3 139 200-341 344-500 (644)
382 PF05694 SBP56: 56kDa selenium 96.1 0.89 1.9E-05 42.9 17.8 189 241-429 90-343 (461)
383 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.4 3E-05 42.1 29.6 259 161-430 36-362 (418)
384 PF14781 BBS2_N: Ciliary BBSom 96.1 0.33 7.2E-06 37.6 12.6 103 156-258 4-126 (136)
385 KOG4441 Proteins containing BT 96.1 0.96 2.1E-05 45.4 19.5 211 129-343 301-548 (571)
386 PF05096 Glu_cyclase_2: Glutam 96.0 1 2.2E-05 39.7 21.3 184 141-329 34-249 (264)
387 smart00356 ZnF_C3H1 zinc finge 96.0 0.0048 1E-07 33.3 1.7 22 35-56 4-26 (27)
388 COG3386 Gluconolactonase [Carb 95.9 1.4 2.9E-05 40.4 22.3 191 127-323 45-264 (307)
389 COG1520 FOG: WD40-like repeat 95.6 2.1 4.6E-05 40.5 29.3 218 115-341 64-305 (370)
390 PF10168 Nup88: Nuclear pore c 95.5 3.4 7.4E-05 42.5 22.0 91 151-260 85-182 (717)
391 PF05096 Glu_cyclase_2: Glutam 95.5 1.6 3.6E-05 38.4 22.7 179 231-417 46-250 (264)
392 PHA03098 kelch-like protein; P 95.4 0.76 1.7E-05 46.0 16.3 186 237-431 293-514 (534)
393 PF00930 DPPIV_N: Dipeptidyl p 95.3 2.6 5.6E-05 39.6 23.1 275 128-417 22-347 (353)
394 PHA02790 Kelch-like protein; P 95.1 1.9 4.2E-05 42.4 17.7 177 161-342 271-471 (480)
395 PHA03098 kelch-like protein; P 95.1 2.7 5.9E-05 42.0 19.1 172 212-390 313-513 (534)
396 PRK13616 lipoprotein LpqB; Pro 94.8 4.3 9.3E-05 40.9 19.0 184 148-336 347-563 (591)
397 COG0823 TolB Periplasmic compo 94.6 3.4 7.4E-05 39.8 17.2 192 211-411 174-381 (425)
398 COG3292 Predicted periplasmic 94.6 4.9 0.00011 39.2 19.0 310 108-429 163-492 (671)
399 COG0823 TolB Periplasmic compo 94.6 2 4.4E-05 41.3 15.6 172 130-304 174-361 (425)
400 PF12234 Rav1p_C: RAVE protein 94.5 1.2 2.6E-05 44.5 14.0 101 323-426 41-154 (631)
401 KOG4499 Ca2+-binding protein R 94.4 2.9 6.3E-05 35.9 17.7 194 128-324 36-264 (310)
402 PHA02790 Kelch-like protein; P 94.3 4.3 9.3E-05 40.0 17.7 128 211-343 288-425 (480)
403 PF08728 CRT10: CRT10; InterP 94.2 3.2 7E-05 42.1 16.4 75 313-387 163-245 (717)
404 PF14583 Pectate_lyase22: Olig 94.0 5.3 0.00011 37.4 24.1 251 128-387 59-380 (386)
405 COG5167 VID27 Protein involved 94.0 0.88 1.9E-05 43.4 11.3 141 286-428 483-632 (776)
406 PF08728 CRT10: CRT10; InterP 93.9 3.2 7E-05 42.1 15.7 104 323-427 114-245 (717)
407 KOG1898 Splicing factor 3b, su 93.9 4.2 9.1E-05 42.5 16.5 168 130-301 854-1048(1205)
408 PRK10115 protease 2; Provision 93.7 9.7 0.00021 39.4 30.0 238 151-431 127-397 (686)
409 COG3391 Uncharacterized conser 93.7 6.7 0.00014 37.3 26.0 192 233-432 77-287 (381)
410 COG3391 Uncharacterized conser 93.6 6.9 0.00015 37.2 28.2 256 131-397 13-292 (381)
411 PF10313 DUF2415: Uncharacteri 93.5 0.4 8.7E-06 29.0 5.4 32 151-182 1-35 (43)
412 PRK13616 lipoprotein LpqB; Pro 93.0 8.9 0.00019 38.7 17.5 161 130-297 380-564 (591)
413 COG3490 Uncharacterized protei 92.3 3.5 7.6E-05 36.5 11.7 189 120-339 125-346 (366)
414 PF00642 zf-CCCH: Zinc finger 92.3 0.041 8.9E-07 29.7 0.1 23 35-57 3-27 (27)
415 PF08801 Nucleoporin_N: Nup133 92.3 8.1 0.00018 37.3 15.9 62 111-181 28-97 (422)
416 KOG3616 Selective LIM binding 92.2 3 6.4E-05 41.9 12.3 106 150-255 14-124 (1636)
417 PF14583 Pectate_lyase22: Olig 92.0 11 0.00024 35.4 27.6 102 135-237 16-130 (386)
418 TIGR03548 mutarot_permut cycli 91.7 11 0.00024 34.9 19.5 110 278-391 68-197 (323)
419 PF02897 Peptidase_S9_N: Proly 91.6 13 0.00029 35.7 27.6 225 127-392 148-408 (414)
420 COG3490 Uncharacterized protei 91.6 9.4 0.0002 34.0 16.9 100 231-330 69-180 (366)
421 PF07569 Hira: TUP1-like enhan 91.5 1 2.2E-05 39.0 7.8 56 372-428 24-95 (219)
422 KOG2377 Uncharacterized conser 91.3 14 0.0003 35.2 15.9 139 121-259 35-187 (657)
423 PF14781 BBS2_N: Ciliary BBSom 91.1 6.2 0.00013 30.8 11.4 72 357-429 49-126 (136)
424 PF07569 Hira: TUP1-like enhan 91.1 1.7 3.6E-05 37.6 8.7 72 111-183 14-98 (219)
425 PLN02153 epithiospecifier prot 91.0 13 0.00029 34.6 20.6 119 211-331 102-260 (341)
426 PF12234 Rav1p_C: RAVE protein 90.9 4.8 0.0001 40.5 12.6 54 125-179 47-103 (631)
427 COG1520 FOG: WD40-like repeat 90.4 16 0.00035 34.5 23.7 153 241-398 113-278 (370)
428 PF11715 Nup160: Nucleoporin N 90.3 2.9 6.2E-05 42.0 11.0 74 118-191 157-259 (547)
429 PF10313 DUF2415: Uncharacteri 89.7 1.3 2.9E-05 26.8 4.8 31 400-430 1-35 (43)
430 COG3823 Glutamine cyclotransfe 89.7 12 0.00025 31.8 13.4 149 161-309 55-212 (262)
431 KOG2247 WD40 repeat-containing 89.4 0.11 2.3E-06 49.0 -0.1 196 229-432 74-284 (615)
432 PF05694 SBP56: 56kDa selenium 89.2 13 0.00028 35.5 13.1 98 290-390 219-344 (461)
433 PF07995 GSDH: Glucose / Sorbo 88.9 20 0.00043 33.4 19.8 53 371-423 272-330 (331)
434 KOG2280 Vacuolar assembly/sort 88.9 26 0.00056 35.6 15.5 175 128-310 63-255 (829)
435 KOG4499 Ca2+-binding protein R 88.7 15 0.00033 31.7 17.3 50 369-418 222-275 (310)
436 COG3823 Glutamine cyclotransfe 88.6 8.9 0.00019 32.4 10.4 173 235-416 51-247 (262)
437 KOG1898 Splicing factor 3b, su 88.4 37 0.00081 36.0 17.4 172 211-388 854-1048(1205)
438 COG5167 VID27 Protein involved 88.2 26 0.00056 34.0 14.7 137 241-388 482-632 (776)
439 PF11715 Nup160: Nucleoporin N 88.1 3.6 7.9E-05 41.3 9.9 72 238-309 157-256 (547)
440 PF10168 Nup88: Nuclear pore c 88.1 15 0.00033 37.9 14.2 33 357-389 148-180 (717)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 88.0 5.2 0.00011 38.2 10.1 51 141-191 298-348 (415)
442 PF14655 RAB3GAP2_N: Rab3 GTPa 87.8 5.3 0.00012 38.1 10.1 53 357-409 58-118 (415)
443 KOG1900 Nuclear pore complex, 87.5 23 0.0005 38.4 15.0 151 123-302 93-273 (1311)
444 TIGR02276 beta_rpt_yvtn 40-res 87.2 4.1 8.9E-05 24.1 6.2 34 160-193 1-35 (42)
445 KOG1983 Tomosyn and related SN 86.6 26 0.00056 37.9 15.3 104 151-259 36-146 (993)
446 KOG3630 Nuclear pore complex, 86.4 13 0.00027 39.6 12.2 126 241-368 116-256 (1405)
447 PF02333 Phytase: Phytase; In 86.3 30 0.00065 32.6 23.1 140 249-389 127-291 (381)
448 KOG2280 Vacuolar assembly/sort 86.1 12 0.00027 37.8 11.6 48 212-259 66-114 (829)
449 PF14761 HPS3_N: Hermansky-Pud 85.2 23 0.0005 30.3 15.5 51 119-170 28-79 (215)
450 TIGR03547 muta_rot_YjhT mutatr 85.2 33 0.00071 32.0 18.9 92 241-332 20-128 (346)
451 TIGR03548 mutarot_permut cycli 85.1 31 0.00068 31.8 16.7 110 235-344 69-197 (323)
452 KOG1900 Nuclear pore complex, 85.1 19 0.00041 39.0 13.0 134 290-429 96-273 (1311)
453 KOG1896 mRNA cleavage and poly 84.6 64 0.0014 34.9 22.9 180 207-388 1001-1213(1366)
454 PF12768 Rax2: Cortical protei 84.5 30 0.00064 31.3 12.6 57 127-184 14-76 (281)
455 KOG3522 Predicted guanine nucl 84.0 10 0.00022 38.9 10.1 131 121-255 549-695 (925)
456 KOG2247 WD40 repeat-containing 83.6 0.13 2.7E-06 48.6 -2.8 134 283-423 46-183 (615)
457 PF14761 HPS3_N: Hermansky-Pud 83.4 28 0.0006 29.8 15.9 144 278-428 22-214 (215)
458 TIGR02276 beta_rpt_yvtn 40-res 83.3 3.7 8.1E-05 24.3 4.6 36 372-407 6-41 (42)
459 COG5161 SFT1 Pre-mRNA cleavage 83.2 63 0.0014 33.7 18.9 259 117-389 870-1168(1319)
460 KOG4460 Nuclear pore complex, 83.1 48 0.001 32.4 15.2 26 152-177 105-130 (741)
461 smart00564 PQQ beta-propeller 83.0 4.2 9E-05 22.6 4.5 27 283-309 6-32 (33)
462 PF08801 Nucleoporin_N: Nup133 82.9 41 0.00089 32.5 14.0 29 358-389 192-220 (422)
463 PF12657 TFIIIC_delta: Transcr 82.5 6 0.00013 32.8 7.0 23 113-135 8-30 (173)
464 KOG3630 Nuclear pore complex, 82.1 13 0.00028 39.5 10.2 98 329-428 120-228 (1405)
465 KOG1916 Nuclear protein, conta 81.8 1.5 3.3E-05 44.8 3.6 179 129-346 111-328 (1283)
466 PF10650 zf-C3H1: Putative zin 81.7 0.87 1.9E-05 23.3 1.0 20 37-56 2-22 (23)
467 KOG1916 Nuclear protein, conta 80.9 1.6 3.4E-05 44.7 3.4 71 358-428 183-265 (1283)
468 PRK14131 N-acetylneuraminic ac 80.5 53 0.0012 31.1 18.1 71 235-305 35-118 (376)
469 PLN02153 epithiospecifier prot 80.4 50 0.0011 30.7 22.6 63 281-344 136-228 (341)
470 PF02333 Phytase: Phytase; In 80.0 54 0.0012 30.9 16.5 142 284-428 69-237 (381)
471 PF03022 MRJP: Major royal jel 79.6 48 0.001 30.1 14.6 135 294-429 35-216 (287)
472 PF10433 MMS1_N: Mono-function 79.5 69 0.0015 31.8 23.8 225 119-346 222-481 (504)
473 PF15390 DUF4613: Domain of un 79.2 71 0.0015 31.8 16.7 142 111-259 21-188 (671)
474 PF13570 PQQ_3: PQQ-like domai 79.1 6 0.00013 23.3 4.4 23 319-341 17-39 (40)
475 TIGR03118 PEPCTERM_chp_1 conse 78.1 54 0.0012 29.8 24.1 167 241-409 102-307 (336)
476 PLN02193 nitrile-specifier pro 77.8 74 0.0016 31.3 21.3 132 211-344 194-354 (470)
477 KOG2063 Vacuolar assembly/sort 77.8 97 0.0021 32.9 14.9 263 111-384 17-304 (877)
478 PF01011 PQQ: PQQ enzyme repea 77.6 7.3 0.00016 22.7 4.4 27 285-311 2-28 (38)
479 PLN00033 photosystem II stabil 77.3 69 0.0015 30.6 17.2 147 150-298 238-396 (398)
480 smart00036 CNH Domain found in 76.8 61 0.0013 29.7 23.1 33 399-433 243-275 (302)
481 KOG3522 Predicted guanine nucl 76.0 13 0.00027 38.2 7.9 147 241-395 549-704 (925)
482 PF10214 Rrn6: RNA polymerase 75.8 1.1E+02 0.0024 32.3 25.7 165 230-427 146-328 (765)
483 TIGR03032 conserved hypothetic 75.7 64 0.0014 29.5 11.9 80 161-240 212-315 (335)
484 COG3292 Predicted periplasmic 75.6 89 0.0019 31.0 17.2 265 150-424 164-443 (671)
485 COG3386 Gluconolactonase [Carb 74.7 70 0.0015 29.4 23.1 187 158-352 32-253 (307)
486 PF07676 PD40: WD40-like Beta 74.7 13 0.00029 21.6 5.1 32 146-177 4-38 (39)
487 PF12341 DUF3639: Protein of u 74.3 9.3 0.0002 20.5 3.7 23 276-298 4-26 (27)
488 KOG2714 SETA binding protein S 74.2 82 0.0018 30.0 12.2 39 149-187 217-260 (465)
489 smart00036 CNH Domain found in 73.8 73 0.0016 29.2 27.5 227 161-398 12-280 (302)
490 KOG0783 Uncharacterized conser 73.5 1.2E+02 0.0026 31.6 13.8 56 128-187 206-263 (1267)
491 KOG1896 mRNA cleavage and poly 72.0 1.6E+02 0.0034 32.2 26.0 140 285-431 1048-1216(1366)
492 PF13570 PQQ_3: PQQ-like domai 71.2 9.2 0.0002 22.5 3.8 24 279-302 17-40 (40)
493 COG4590 ABC-type uncharacteriz 70.2 39 0.00084 32.3 9.1 154 273-430 220-388 (733)
494 PF15500 Toxin_39: Putative RN 69.2 2.3 5.1E-05 29.7 0.9 17 43-59 25-41 (96)
495 KOG4460 Nuclear pore complex, 68.2 1.3E+02 0.0027 29.7 15.1 90 283-395 115-205 (741)
496 KOG4791 Uncharacterized conser 68.2 1.6 3.4E-05 41.1 -0.2 30 32-61 29-58 (667)
497 PRK14131 N-acetylneuraminic ac 67.8 1.1E+02 0.0024 28.9 23.0 37 211-247 190-230 (376)
498 PF10433 MMS1_N: Mono-function 67.0 1.4E+02 0.003 29.7 24.0 242 159-409 219-503 (504)
499 PF12768 Rax2: Cortical protei 66.9 99 0.0021 28.0 12.4 102 292-395 15-130 (281)
500 PF14870 PSII_BNR: Photosynthe 66.8 1E+02 0.0023 28.2 29.1 263 149-425 15-301 (302)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-48 Score=337.27 Aligned_cols=314 Identities=23% Similarity=0.374 Sum_probs=278.4
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
...+.|..+|.|+.|+++ .+++|+.|.++++||+.+. .++.+.++|...|.|++|+||++.||+|+.||+|++||.+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 446789999999999875 5888999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCceEE-EEecC-CceEEEEe-------CCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC-EEEEEeCC
Q 013881 181 SGQCAG-VINLG-GEVGCMIS-------EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQD 248 (434)
Q Consensus 181 ~~~~~~-~~~~~-~~~~~~~~-------~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~g~~d 248 (434)
+|+++. .+..+ ..+.++.+ +.++++.+ .||.+++||+..+..+ .+.+|+..|+|+.|..+ ++++|+.|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence 997664 34333 34666643 44555554 5999999999998876 88999999999999966 99999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC-------------CC-------------------------EEEEec
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-------------AN-------------------------KLYSGS 290 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~l~s~s 290 (434)
++|++|+...+ .....+++|...|..++.+ ++ .+++|+
T Consensus 268 rtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 268 RTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred ceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 99999999887 7889999999999988875 33 499999
Q ss_pred CCCcEEEEeCCC-CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 291 MDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 291 ~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
.|.++.+|+... .+++..+.+|+..|..+.|+ +.++++++.|+.|++||.++++.+..+..|-. .+..++|+.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~--~VYqvawsaDs 421 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA--AVYQVAWSADS 421 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc--eeEEEEeccCc
Confidence 999999999754 56899999999999999999 67999999999999999999999888888775 58889998776
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
. +|++|+.|.++++||+++.++...+. |.++|.++.|+||| .+++|+.|..+++|.
T Consensus 422 R---LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 422 R---LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred c---EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5 99999999999999999999998888 78999999999999 999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-44 Score=311.00 Aligned_cols=285 Identities=22% Similarity=0.321 Sum_probs=253.6
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC-ceEEEE--eCCCEEEEEc-CCcEEEE
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI--SEGPWIFIGV-TNFVKAW 215 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~-~~~i~~w 215 (434)
.++-..+.||.++|.+++|+|++..|+||+.|.++|+||+.+...+.+.+.+. -+.|+. +++..|+++. +|.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 35667788999999999999999999999999999999999999999988765 466664 6888999876 8999999
Q ss_pred ECCCCceE--EecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-CE
Q 013881 216 NTQTNTDL--SLSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NK 285 (434)
Q Consensus 216 ~~~~~~~~--~~~~~~~~v~~l~~~~~-------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~ 285 (434)
|.++++++ .+.+|...|++++|.|- .|++++.||.|+|||+..+ ..+..+.+|+.+|+|+.|.| ++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~gl 260 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEGL 260 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCce
Confidence 99999987 89999999999999765 8999999999999999988 78899999999999999985 58
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-------------CC-------------------------EEE
Q 013881 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-------------DQ-------------------------FLL 327 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-------------~~-------------------------~l~ 327 (434)
+++|+.|++|++|+...|++.+.+++|...|+.++.+ ++ .|+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 9999999999999999999999999999999988876 33 399
Q ss_pred EEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEE
Q 013881 328 SCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAI 405 (434)
Q Consensus 328 s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 405 (434)
+|+.|.++.+|+.....+ +.....|. .-+..+.|+|+.. ++++++.|.+|++|+-.+++.+..+. |-+.|..+
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq--~lVn~V~fSPd~r---~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQ--ALVNHVSFSPDGR---YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred EecCCceEEEecccccccchhhhhchh--hheeeEEECCCcc---EEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 999999999998765543 33333333 4688999987765 99999999999999999999999998 78999999
Q ss_pred EecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 406 QLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 406 ~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|+.|. +|++|+.|.++++|++.+.++.
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 999999 9999999999999999998764
No 3
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-44 Score=306.35 Aligned_cols=294 Identities=23% Similarity=0.362 Sum_probs=264.1
Q ss_pred CCCcCCCCCCCCCcccccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE
Q 013881 89 SNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG 168 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~ 168 (434)
..||+.|+.+..++++..+....|+|+.+.++.++.|..|.+|+|||..+- .++..|.||++.|.|+.|. .+.|++|
T Consensus 177 dsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviisG 253 (499)
T KOG0281|consen 177 ESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVSG 253 (499)
T ss_pred hcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEec
Confidence 468999999999999999999999999999999999999999999999986 8999999999999999985 5699999
Q ss_pred ECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCC
Q 013881 169 SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248 (434)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~d 248 (434)
+.|.+|+|||+++++++.+ +..|...|..+.|+..++++++.|
T Consensus 254 SSDsTvrvWDv~tge~l~t-------------------------------------lihHceaVLhlrf~ng~mvtcSkD 296 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTGEPLNT-------------------------------------LIHHCEAVLHLRFSNGYMVTCSKD 296 (499)
T ss_pred CCCceEEEEeccCCchhhH-------------------------------------HhhhcceeEEEEEeCCEEEEecCC
Confidence 9999999999999998765 678999999999999999999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEE
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLS 328 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s 328 (434)
.+|.+||+.... .......+.+|...|..+.|+.+++++++.|.+|++|++.+++.++++.+|+..|.|+.+.++++++
T Consensus 297 rsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVS 375 (499)
T KOG0281|consen 297 RSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVS 375 (499)
T ss_pred ceeEEEeccCch-HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEe
Confidence 999999998865 3456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc----------cccc
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG----------KIFA 398 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~ 398 (434)
|+.|.+|++||+..+.++..+.+|.+- +.++.|. . +.+++|+.||+|++||+..+.... ...|
T Consensus 376 GSSDntIRlwdi~~G~cLRvLeGHEeL--vRciRFd--~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h 448 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLRVLEGHEEL--VRCIRFD--N---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH 448 (499)
T ss_pred cCCCceEEEEeccccHHHHHHhchHHh--hhheeec--C---ceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence 999999999999999999998888764 6666552 2 269999999999999998765432 1235
Q ss_pred cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 399 KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 399 ~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
.+.|..+.|..- .+++++.|.+|.|||+.++.
T Consensus 449 sgRVFrLQFD~f-qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 449 SGRVFRLQFDEF-QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cceeEEEeecce-EEEeccCCCeEEEEEcCCCC
Confidence 778999999422 99999999999999998774
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.6e-42 Score=298.34 Aligned_cols=273 Identities=21% Similarity=0.319 Sum_probs=247.9
Q ss_pred cccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCC--CCEEEEEECCCcEEEEECCCCc
Q 013881 108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 108 ~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
-..||..+.|+.+ .+++|+-+|.++||+..+. ..+.+|.||...|.++.|+|. +..|||++.||++++|++.+..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 3558888888654 5889999999999999998 999999999999999999996 6689999999999999998876
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.+.. +.+|..+|..++|+|+ +|++++.|.+-++||++++
T Consensus 253 ~l~~-------------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-- 293 (459)
T KOG0272|consen 253 PLQD-------------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-- 293 (459)
T ss_pred chhh-------------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccc--
Confidence 6544 6789999999999999 9999999999999999998
Q ss_pred ccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
..+....+|...|.+++|. |..+++|+.|..-+|||++++.++..|.+|..+|.+++|+ |..|++|+.|++++|
T Consensus 294 --~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 294 --SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred --hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 6677788999999999995 6799999999999999999999999999999999999999 679999999999999
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEE
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s 415 (434)
||++....+..+..|.. -|..+.|.| ..+.+|++++.|++++||...++.++..+. |++.|.++++++|+ .++|
T Consensus 372 WDLR~r~~ly~ipAH~n--lVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSN--LVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred eeecccccceecccccc--hhhheEecc--cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 99998888777766664 488899987 345699999999999999999999999887 58899999999999 9999
Q ss_pred eCCCCCEEEEE
Q 013881 416 GDGTGQVRVWQ 426 (434)
Q Consensus 416 ~~~dg~i~iwd 426 (434)
++.|.++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=273.11 Aligned_cols=279 Identities=21% Similarity=0.350 Sum_probs=251.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc-eE--EEEeCCCEEEEEc-CCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VG--CMISEGPWIFIGV-TNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~-~~~i~~w~ 216 (434)
+..++|+||.+.|.++.|++|+++|+++|.||.+.|||.-+...++.+..+.. +. ++.+.+.+++++. |+...+|+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 55689999999999999999999999999999999999999999998888765 22 3346888888865 89999999
Q ss_pred CCCC--c-----eEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCE
Q 013881 217 TQTN--T-----DLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANK 285 (434)
Q Consensus 217 ~~~~--~-----~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~ 285 (434)
+.+. + ...+.+|.+.+.++.|-++ .|++++.|.+..+||++++ +.+..+.+|...|.++++. ++.
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCCe
Confidence 9855 2 1258899999999999988 9999999999999999998 7889999999999999886 478
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
+++|+-|+..++||++.+.++++|.+|+..|.++.|. |.-|++|+.|++.++||++....+..+.......++.+++|
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 9999999999999999999999999999999999998 77999999999999999999988888887777778999999
Q ss_pred ccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 364 MPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
+..+. +|++|..|..+.+||.-.++....+. |++.|.++..+||| .|+||+.|.+++||.
T Consensus 282 S~SGR---lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGR---LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccc---EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 76554 99999999999999999988888776 68999999999999 999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=257.60 Aligned_cols=277 Identities=23% Similarity=0.333 Sum_probs=234.9
Q ss_pred ccccccccceEEEEEe---CCcEEEecCCCeEEEEeCCC-----CceEEEEecCccccEEEEEccCCCCEEEEEECCCcE
Q 013881 103 NNRAVIKTDILCRNWV---QGNCMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~---~~~~~~g~~d~~i~vwd~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v 174 (434)
+....|.+.|+.++.. ++.++.++.|..+.+|++.. | .+++.|.||...|..++.++|+++.++++.|+++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G-~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG-VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC-ceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3456788889888873 45688899999999999863 4 6789999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 013881 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (434)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 252 (434)
++||+.+++..+. +.+|...|.+++|+++ .+++|+.|.+|+
T Consensus 88 rlWDl~~g~~t~~-------------------------------------f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 88 RLWDLATGESTRR-------------------------------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred EEEEecCCcEEEE-------------------------------------EEecCCceEEEEecCCCceeecCCCcceee
Confidence 9999999976654 6789999999999998 999999999999
Q ss_pred EEEcCCCCCccccceeecC--ccceEEEEEECCC----EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CC
Q 013881 253 AWKFNVTTNCFEPAASLKG--HSLAVVSLVVGAN----KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ 324 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~ 324 (434)
+|+.... +..+... +...|.++.|+|+ .|++++.|++|++||+++.+....+.+|++.++.+.++ |.
T Consensus 131 lwnt~g~-----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 131 LWNTLGV-----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eeeeccc-----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 9998764 2333332 3788999999865 79999999999999999999999999999999999998 77
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc------
Q 013881 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA------ 398 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 398 (434)
.+++|+.||.+.+||+++.+.+. .......+.+++|+|... .| +...+..|+|||+.+...+..+..
T Consensus 206 lcasGgkdg~~~LwdL~~~k~ly---sl~a~~~v~sl~fspnry---wL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLY---SLEAFDIVNSLCFSPNRY---WL-CAATATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred EEecCCCCceEEEEEccCCceeE---eccCCCeEeeEEecCCce---eE-eeccCCceEEEeccchhhhhhccccccccc
Confidence 99999999999999999887744 334445799999987653 44 444567799999999888776642
Q ss_pred ----cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 399 ----KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 399 ----~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.....+++|++|| .|++|..|+.|++|.+..
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 2235678999999 999999999999999853
No 7
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=291.32 Aligned_cols=282 Identities=37% Similarity=0.576 Sum_probs=250.1
Q ss_pred ccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 107 VIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.+...+.|..|.++.+++++.|.+|++||..+++.+...+.||.+.|.+++|..-+.+|++|+.|.++++||+.+|++..
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 45668999999999999999999999999999955555599999999999998888999999999999999999999999
Q ss_pred EEecCCceEEEEe-CCCEEEE-EcCCcEEEEECCCCceEEecC-CCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcc
Q 013881 187 VINLGGEVGCMIS-EGPWIFI-GVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263 (434)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~l~~-~~~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 263 (434)
.+..+........ ....++. +.|.+|++|+++++..+.+.. |..+|.++..+.+++++|+.|++|++||+.+.
T Consensus 286 ~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~---- 361 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG---- 361 (537)
T ss_pred EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc----
Confidence 9997766555544 4444444 369999999999999885554 99999999999889999999999999999976
Q ss_pred ccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCC-eEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcC
Q 013881 264 EPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 264 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 341 (434)
+++..+.+|...|.++.+++ +.+++|+.|++|++||+++. +++.++.+|.+.+..+.+.+++|++++.|++|++||..
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence 89999999999999999999 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
+.+.+..+... +...+..++.. ...+++++.|+++++||+++++....+..
T Consensus 442 ~~~~~~~~~~~-~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 442 EGECLRTLEGR-HVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred cCceeeeeccC-CcccEEEeecC-----cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 99998888775 32456666554 23789999999999999999998887743
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-35 Score=260.67 Aligned_cols=319 Identities=18% Similarity=0.283 Sum_probs=266.8
Q ss_pred cccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEec---CccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
....|..-|.|+.|+++. +++++.||.|.+||-.++ +.+..|. +|++.|.+|+|+||++.|+|++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 356788899999998875 667889999999999999 8888888 8999999999999999999999999999999
Q ss_pred CCCCceEEEEecCC-----ceEEEEeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 013881 179 CASGQCAGVINLGG-----EVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (434)
Q Consensus 179 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~ 250 (434)
+.+.++++++.... .+.|+...+.++.++.+|.|.+++....... .+.+|...|+++..+++ +|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 99999999998765 4667778888888999999999999988855 78999999999999998 9999999999
Q ss_pred EEEEEcCCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeE------------------------
Q 013881 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQC------------------------ 305 (434)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~------------------------ 305 (434)
|.-|+...+.. ....-+.|...|..++... ..+++.+.|.+|++.++.....
T Consensus 344 I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 344 INSWDSGSGTS---DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred EEEEecCCccc---cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 99999988742 2222367999999999986 7899999999999998743110
Q ss_pred -------EEEEcccc--------ccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 306 -------IQTLTEHT--------SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 306 -------~~~~~~~~--------~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
+..++.+. -...+++++ ++.+++|+.|+.|+||.+.............+...+..++++|+..
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 01111111 112344444 7899999999999999998776555555555667799999988776
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCccccc--ccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGK--IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+|+++...+.+.+||+.+.+.... .+|...|.+++|+|+. ++|||+-|-.|.||+++.
T Consensus 501 ---yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 501 ---YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ---EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 999999999999999998776333 3489999999999999 999999999999999875
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=270.42 Aligned_cols=275 Identities=22% Similarity=0.369 Sum_probs=241.7
Q ss_pred cccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
++.+-+|..+.|.++ .+++|+..|.+.+|+..+ +.....++.|..+|+++.|++++.+++||+.+|.|++|+..-..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 445668999999765 689999999999999854 45666778999999999999999999999999999999976432
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC-CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
.. .+.. |...|.+++|+|+ .+++++.||+|+|||....
T Consensus 172 Vk--------------------------------------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~- 212 (464)
T KOG0284|consen 172 VK--------------------------------------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP- 212 (464)
T ss_pred hH--------------------------------------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-
Confidence 21 1333 4589999999988 9999999999999999987
Q ss_pred CccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (434)
+....+.+|.-.|.++.|++. ++++++.|..|++||.++++++.++.+|+..|+.+.|. +++|++++.|..++
T Consensus 213 ---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 213 ---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred ---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 566778999999999999864 79999999999999999999999999999999999998 78999999999999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--ccCcEEEEEecCCc-EE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--AKQEIRAIQLGPGG-LF 413 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~spdg-~l 413 (434)
++|+++.+.+..+..|... +.++.|+|-.++ +|.+|+.||.|..|.+...+++..+. |...|++++|+|-| .|
T Consensus 290 v~DiR~mkEl~~~r~Hkkd--v~~~~WhP~~~~--lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKD--VTSLTWHPLNES--LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred EEehhHhHHHHHhhcchhh--heeecccccccc--ceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence 9999988777777777654 889999987664 89999999999999999767776665 58899999999999 99
Q ss_pred EEeCCCCCEEEEEc
Q 013881 414 FTGDGTGQVRVWQW 427 (434)
Q Consensus 414 ~s~~~dg~i~iwd~ 427 (434)
++|+.|.++++|.-
T Consensus 366 ~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTR 379 (464)
T ss_pred eecCCCcceeeecc
Confidence 99999999999974
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=269.44 Aligned_cols=322 Identities=23% Similarity=0.367 Sum_probs=259.3
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
.....|...|+++.|+++. +++|+.|...++|.++... -....+.+|++.|-++-|..+...|+|.+.||.+.+|..
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 4456778899999997764 6668999999999998541 236678899999999999999999999999999999987
Q ss_pred CC-----------------------Cce-EE--------E--Ee-------------------------------c----
Q 013881 180 AS-----------------------GQC-AG--------V--IN-------------------------------L---- 190 (434)
Q Consensus 180 ~~-----------------------~~~-~~--------~--~~-------------------------------~---- 190 (434)
.. ++. ++ . +. .
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 61 110 00 0 00 0
Q ss_pred --------CCceEEEEe--CCCEEEEEcCC--cEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 191 --------GGEVGCMIS--EGPWIFIGVTN--FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 191 --------~~~~~~~~~--~~~~l~~~~~~--~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
..++..+.. .+.+++.+..+ .+.+|+.++...+ ..++|...+.+++++|| ++++|+.||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 011112222 37788887755 9999999988765 78899999999999999 999999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC-------------------------------
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET------------------------------- 302 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~------------------------------- 302 (434)
...+ -+..++..|+..|+.+.|. ++.+++.+.||+|+.||+..
T Consensus 379 ~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 379 TQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred ccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 9988 7899999999999999995 78899999999999999863
Q ss_pred -------------CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 303 -------------LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 303 -------------~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
|+.+..+.+|+++|.+++|+ ++.|++++.|.+|++||+-............ ..++.++|.|++
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~--sdvl~vsfrPdG 532 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR--SDVLAVSFRPDG 532 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec--cceeEEEEcCCC
Confidence 34445567999999998887 8899999999999999997664444333333 358899998877
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccccccc---------------------cCcEEEEEecCCc-EEEEeCCCCCEEEE
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---------------------KQEIRAIQLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~v~~~~~spdg-~l~s~~~dg~i~iw 425 (434)
. .|++++-||.|.+||...+.+...+.. ....+.+++++|| .+++|+....|+||
T Consensus 533 ~---elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 533 K---ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred C---eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 6 799999999999999988766644431 2458999999999 99999999999999
Q ss_pred EccCCccc
Q 013881 426 QWCNGPVA 433 (434)
Q Consensus 426 d~~~g~~~ 433 (434)
++.++-++
T Consensus 610 ~v~~~vll 617 (893)
T KOG0291|consen 610 DVPEGVLL 617 (893)
T ss_pred ECchhhee
Confidence 99987654
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-35 Score=260.20 Aligned_cols=313 Identities=18% Similarity=0.266 Sum_probs=266.5
Q ss_pred cccccceEEEEEeC---CcEEEecCCCeEEEEeCCCC-ce--EEEEec------C----ccccEEEEEccCCCCEEEEEE
Q 013881 106 AVIKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDG-FK--LLTQLE------G----HQKVVSGITLPSGSDKLYSGS 169 (434)
Q Consensus 106 ~~~~~~i~c~~~~~---~~~~~g~~d~~i~vwd~~~~-~~--~~~~l~------~----h~~~V~~l~~s~~~~~l~s~s 169 (434)
..|+.+|.|.+|.+ +.+..|+.|-..++|++... .. ....|+ + -...|++++|+.+|.+||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34899999999944 35677889999999998741 01 111111 1 236899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEe-cCCceEEEEe--CCCEEEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC-EEE
Q 013881 170 KDETVRVWDCASGQCAGVIN-LGGEVGCMIS--EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLF 243 (434)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~ 243 (434)
.||.++||+... ..+.++. +.+++.++-. .+.+|++ +.|+++.+||..+++.. .+.-|..+-..+.|-.+ .++
T Consensus 255 ~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 255 EDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred cCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 999999999764 4444544 4577888765 4555665 56999999999999877 55667777678888776 999
Q ss_pred EEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEE
Q 013881 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (434)
Q Consensus 244 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 321 (434)
+.+.|+.|+|+.+... .|..++.+|..+|.++.|+ +.+|++++.|++++||.+....+...|.+|...|..+.|
T Consensus 334 ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred ecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 9999999999999887 8899999999999999998 679999999999999999999999999999999999998
Q ss_pred cC-----------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 322 WD-----------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 322 ~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
++ ..+++++.|++|++||+..+.++..+..|.. +|.+++|+|++. ++++|+.||.|.||+.+++
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~---ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGR---YLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCc---EEEecCCCCeeEeccccch
Confidence 72 4799999999999999999998888777765 599999988766 9999999999999999999
Q ss_pred cccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 391 AERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 391 ~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+........+.|..++|+.+| +|..+-.|+.+++-|+.
T Consensus 485 ~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999 99999999999999875
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-36 Score=278.01 Aligned_cols=324 Identities=17% Similarity=0.250 Sum_probs=260.3
Q ss_pred ccccccceEEEEEeCC----cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 105 RAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~----~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
...|.+.|..+.|.+. -+++|..|+.+++||+.+...++..+..|...|++++|++|+.-+++++.|..+.|||+.
T Consensus 143 fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 143 FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 4566778888888554 357899999999999997756688999999999999999999999999999999999997
Q ss_pred CCceEEEEecCCceEEEEe-------------------------------------------------------------
Q 013881 181 SGQCAGVINLGGEVGCMIS------------------------------------------------------------- 199 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 199 (434)
+.+..+++..-..+.+...
T Consensus 223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae 302 (775)
T KOG0319|consen 223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE 302 (775)
T ss_pred hhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEcc
Confidence 6655554443222222211
Q ss_pred --------------------------------CCCEEEE-EcCCcEEEEECCCCceEEecCCCCcEEEEE-EeCC-EEEE
Q 013881 200 --------------------------------EGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMA-VGND-LLFA 244 (434)
Q Consensus 200 --------------------------------~~~~l~~-~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~-~~~~-~l~~ 244 (434)
+..++++ .....+++++..+.....+.+|...|.++. |+.. +|++
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat 382 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLAT 382 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEE
Confidence 0112222 223344444444444556788999999998 4444 9999
Q ss_pred EeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeE-----E----EEEccc
Q 013881 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQC-----I----QTLTEH 312 (434)
Q Consensus 245 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~-----~----~~~~~~ 312 (434)
|+.|.++++|.++.+.....++....+|...|.+++.+ ..+|+++|.|.+|++|++...+. + .+...|
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 99999999999966655556777888999999999986 35899999999999999976221 1 133469
Q ss_pred cccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 313 TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 313 ~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
...|.++++. ..++++||.|++.+||++.+.+....+.+|.. .+.++.|++... +++++|.|++|+||.+.++
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R--Gvw~V~Fs~~dq---~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR--GVWCVSFSKNDQ---LLATCSGDKTVKIWSISTF 537 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc--ceEEEEeccccc---eeEeccCCceEEEEEeccc
Confidence 9999999988 56999999999999999997777777777765 599999988766 9999999999999999999
Q ss_pred ccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 391 AERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 391 ~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
..+.++. |...|..+.|-.+| .|++++.||.|+||++++++++
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 9999998 78899999999999 9999999999999999998875
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=237.49 Aligned_cols=279 Identities=23% Similarity=0.364 Sum_probs=230.1
Q ss_pred ccccccccceEEEEEeCC---cEEEecCCCeEEEEeCCC--CceEEEEe-cCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 103 NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGD--GFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~--~~~~~~~l-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
.....|++.+..++|.++ .+++++.|+.|++|+... ...+...+ .+|+..|.+++|+|.|++|+++|.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 445678889999999888 477889999999999884 24555555 479999999999999999999999999999
Q ss_pred EECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 013881 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (434)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vw 254 (434)
|.-..++.... -.+.+|...|.+++|+++ +|++++.|.+|.||
T Consensus 88 w~k~~~efecv-----------------------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 88 WKKEDGEFECV-----------------------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred eecCCCceeEE-----------------------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 98775542211 247899999999999988 99999999999999
Q ss_pred EcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCC---CCeEEEEEccccccEEEEEEc--CCEEE
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLE---TLQCIQTLTEHTSVVMSLLCW--DQFLL 327 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~v~~l~~~--~~~l~ 327 (434)
.+.. ...++....++.|+..|..+.|+| ++|++++.|.+|++|+-. .-++++++.+|...|.+++|+ |..|+
T Consensus 133 e~de-ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 133 EIDE-DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred EecC-CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 9984 445788999999999999999998 789999999999999865 467899999999999999998 78999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC------cccccc--ccc
Q 013881 328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF------AERGKI--FAK 399 (434)
Q Consensus 328 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~--~~~ 399 (434)
+++.|++++||-.... ....+...+..+.|. ++ .|++++.|+.|++|.-... +.+... .|.
T Consensus 212 s~sdD~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe 280 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTD------LSGMHSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE 280 (312)
T ss_pred EecCCcceEeeeeccC------cchhcccceEeeeec-cc----ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence 9999999999975421 122222346666665 21 7999999999999987642 222222 257
Q ss_pred CcEEEEEecCCc--EEEEeCCCCCEEEEEcc
Q 013881 400 QEIRAIQLGPGG--LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 400 ~~v~~~~~spdg--~l~s~~~dg~i~iwd~~ 428 (434)
..|++++|.|.. +|++|++||.|++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 789999999953 99999999999999985
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.1e-37 Score=266.93 Aligned_cols=237 Identities=24% Similarity=0.341 Sum_probs=218.8
Q ss_pred ccccccccceEEEEEeCC----cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 103 NNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~----~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
.....|...|.++.|.+. .+++++.||++++|++++. .++..|.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 445789999999999665 6889999999999999987 99999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 179 CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
+++++.+. ...+|...|.+++|.++ ++++|+.|..-+|||+
T Consensus 290 ~~tk~ElL-------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 290 LETKSELL-------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred cccchhhH-------------------------------------hhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99886542 36789999999999999 9999999999999999
Q ss_pred CCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSL 331 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~ 331 (434)
+++ +.+..+.+|..+|.++.|+++ .|++|+.|++++|||++..+++.++.+|...|+.+.|. |.+|++++.
T Consensus 333 Rtg----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 333 RTG----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ccC----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999 789999999999999999865 79999999999999999999999999999999999998 679999999
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
|++++||..++..+++.+.+|... |.++.+++++. ++++++.|.++++|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~k--V~s~Dis~d~~---~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGK--VISLDISPDSQ---AIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccc--eEEEEeccCCc---eEEEeccCceeeecc
Confidence 999999999999999998888765 88898888776 999999999999995
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.3e-35 Score=250.81 Aligned_cols=279 Identities=23% Similarity=0.355 Sum_probs=241.3
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.-...|.+-|.|+++.+++ +++|+.|++|+|||+.++ ++..++.||...|..+++|+-..||++++.|+.|+-||++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 3357888999999997665 677999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~ 258 (434)
..+.++. ..+|-..|+++..+|. .|++|+.|.++++||+++
T Consensus 224 ~nkvIR~-------------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 224 YNKVIRH-------------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred hhhhHHH-------------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 9887765 5689999999999987 999999999999999999
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC--CEEEEEeCCCc
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKT 334 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~ 334 (434)
. ..+..+.+|..+|.++.+. ...+++|+.|++|++||++.++...++..|...|.+++.++ ..+++++. ..
T Consensus 267 r----~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dn 341 (460)
T KOG0285|consen 267 R----ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DN 341 (460)
T ss_pred c----ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-cc
Confidence 8 7789999999999999997 55899999999999999999999999999999999999984 35555554 47
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc---------ccCcEEEE
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF---------AKQEIRAI 405 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~ 405 (434)
|+-|++..+..+..+..+.. .+.++....+ .++++|+..|.|.+||.+++...+... .+..|.+.
T Consensus 342 ik~w~~p~g~f~~nlsgh~~--iintl~~nsD----~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as 415 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNA--IINTLSVNSD----GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFAS 415 (460)
T ss_pred ceeccCCccchhhccccccc--eeeeeeeccC----ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEE
Confidence 99999998877777655554 3555554322 289999999999999999876554442 36679999
Q ss_pred EecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 406 QLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 406 ~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+|...| .|++|..|.+|++|+-.+.
T Consensus 416 ~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 416 CFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eecccCceEEeccCCcceEEEecccc
Confidence 999999 9999999999999986543
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=252.06 Aligned_cols=245 Identities=26% Similarity=0.520 Sum_probs=221.6
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
.++.+.+++|.+.|.|+++.|..++|+||+.|++++|||+.+|++..+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-------------------------------- 188 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-------------------------------- 188 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--------------------------------
Confidence 477888999999999999999999999999999999999999987644
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcE
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSI 295 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i 295 (434)
+.+|...|..+++++. ++++++.|+.|+.||+..+ +.++.+.+|-..|.+++..+ +.|++|+.|.++
T Consensus 189 -----ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 189 -----LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred -----ecchhheeeeeeecccCceEEEecCCCeeEEEechhh----hhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 7889999999999988 9999999999999999988 88999999999999999985 579999999999
Q ss_pred EEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
+|||+++...+..+.+|..+|.++.+. +..+++|+.|++|++||++.++....+..|.. .+.+++..|... .+
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~---~f 334 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKEN---LF 334 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchh---hh
Confidence 999999999999999999999999998 78999999999999999999988777766654 578888776554 67
Q ss_pred EEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
++++.| .|+-|+++.+..+..+. |..-|++++...|+++++|+++|.|.+||+++|.
T Consensus 335 ASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 335 ASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred hccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 877766 69999999999888765 4677899999999999999999999999999874
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=241.18 Aligned_cols=284 Identities=20% Similarity=0.313 Sum_probs=239.6
Q ss_pred CCCCcccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEE
Q 013881 98 KNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR 175 (434)
Q Consensus 98 ~~~~~~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 175 (434)
+..++.....|++.|++..|.++. +++|+.|..|.+|++....+-...+++|+++|..+.|.+|+..|++++.|.+|+
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 444566788999999999997654 667889999999998866688899999999999999999999999999999999
Q ss_pred EEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC---CEEEEEeCCCcEE
Q 013881 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---DLLFAGTQDGAIL 252 (434)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~g~~dg~i~ 252 (434)
.||.++|++++. ..+|..-|.++.... .++.+++.|++++
T Consensus 116 ~wD~~tG~~~rk-------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 116 GWDAETGKRIRK-------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK 158 (338)
T ss_pred EEecccceeeeh-------------------------------------hccccceeeecCccccCCeEEEecCCCceEE
Confidence 999999998876 456777777776433 2899999999999
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEE
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (434)
+||++.. ..+..+. ...+++++.|. ++.+++|+-|+.|++||++.......+.+|..+|+.+..+ +.++++
T Consensus 159 l~D~R~k----~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 159 LWDIRKK----EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred EEeeccc----chhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence 9999976 4444432 45678899996 6789999999999999999999999999999999999888 889999
Q ss_pred EeCCCcEEEEEcCCC----CceEEEeeecC--CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCc
Q 013881 329 CSLDKTIKVWFATDS----GNLEVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQE 401 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 401 (434)
-+.|.++++||++.. .++..+..+.+ +...+..+|+|+.. .+.+|+.|..+++||..+...+..+. |.+.
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~---~i~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT---KITAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC---ccccccccceEEEeecccccEEEEcCCccee
Confidence 999999999999854 33555555443 34556667766655 78999999999999999988888876 5789
Q ss_pred EEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 402 IRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 402 v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
|.+++|+|.. .|.+++.|.+|++=+
T Consensus 311 vn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 311 VNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999999 999999999998743
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=236.48 Aligned_cols=274 Identities=15% Similarity=0.208 Sum_probs=233.8
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.....|.+.|+|+.|+.+ .+++++.||.+.|||..+. ..++.+.-....|..++|+|.++++|.|+-|....||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 335678889999999765 5888999999999999987 7777788888999999999999999999999999999998
Q ss_pred CC------ceEEEEecCCc-eEEEEe--CCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeC-C--EEEEEeC
Q 013881 181 SG------QCAGVINLGGE-VGCMIS--EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQ 247 (434)
Q Consensus 181 ~~------~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~g~~ 247 (434)
+. +..+.+..+.. +.|..+ ++.+|..+.|.+..+||+++++.. .+.+|.+.|.++.+.| + .+++|+.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 65 23344444433 333333 555666677999999999999987 7889999999999999 4 9999999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc--ccccEEEEEEc-
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW- 322 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~- 322 (434)
|+..++||++.+ ...+.+.+|...|.++.|. |.-|++|+.|++.|+||++..+.+..+.. ...+|++++|+
T Consensus 208 D~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 208 DKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999999998 7899999999999999985 56899999999999999999988888864 34578999998
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
|++|++|..|.++.+||.-.++....+..|.. .|.++..+|++- .+++|+.|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~---av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGM---AVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCc---EEEecchhHheeecC
Confidence 89999999999999999988888888887765 577777776655 899999999999994
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-35 Score=250.34 Aligned_cols=278 Identities=23% Similarity=0.318 Sum_probs=246.1
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.....|..+|+.+-|.+.. .++++.|.+|++||..++ ++.+.|+||.+.|.+|+|+..|++|++++.|-.+++||.+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 3345588899999997775 445667999999999999 8899999999999999999999999999999999999987
Q ss_pred CC-ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 181 SG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
+. ++++ .+.+|...|.++.|-|. ++++++.|.+|+.|++.
T Consensus 181 ~~~~c~k-------------------------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 181 TFFRCIK-------------------------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred HHHHHHH-------------------------------------HhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 63 3333 36688889999999776 99999999999999999
Q ss_pred CCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc------------C
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW------------D 323 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~------------~ 323 (434)
++ ..+.++.+|...|..+.++ |..+++++.|.+|++|-+.++++...+..|+-+|-+++|- +
T Consensus 224 tg----~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 224 TG----YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred cc----eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 98 7899999999999999986 5579999999999999999999999999999999998874 2
Q ss_pred -----CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-
Q 013881 324 -----QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF- 397 (434)
Q Consensus 324 -----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 397 (434)
+++.+++.|++|++||+.++.++..+..|. ..|..++|+|.+. ||+++..|+++++||+++.++...+.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gk---yi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGK---YILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCe---EEEEEecCCcEEEEEeccceeeeccCC
Confidence 489999999999999999998888887776 4688999876554 99999999999999999999888776
Q ss_pred ccCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 398 AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 398 ~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
|+.-+++++|+.+. +++||+-|.++++|..
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 57789999999999 9999999999999974
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-34 Score=235.96 Aligned_cols=252 Identities=23% Similarity=0.356 Sum_probs=214.7
Q ss_pred ceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
+.+..++++|++.|+.++..+. .+.|++++.|.++.+|++..... +
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---------------------------------~ 51 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---------------------------------K 51 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---------------------------------c
Confidence 4667789999999999999875 67899999999999999876421 1
Q ss_pred CCce-EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCC
Q 013881 219 TNTD-LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDN 293 (434)
Q Consensus 219 ~~~~-~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg 293 (434)
.+.. ..+.+|...|..+..+++ +.++++.|+++++||+.++ +....+.+|...|.++++++ ..+++|+.|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 1222 257899999999999988 9999999999999999998 77899999999999999975 4899999999
Q ss_pred cEEEEeCCCCeEEEEEccc--cccEEEEEEcCC----EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 294 SIRVWNLETLQCIQTLTEH--TSVVMSLLCWDQ----FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~--~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
+|++|++.... ..++..+ ...|.++.|+++ +|++++.|++|++||+++.+....+..|. ..+..++++|++
T Consensus 128 Tiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~--~~v~t~~vSpDG 204 (315)
T KOG0279|consen 128 TIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS--GYVNTVTVSPDG 204 (315)
T ss_pred eeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc--ccEEEEEECCCC
Confidence 99999987644 4444433 789999999954 89999999999999999888777777765 458888888877
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcccC
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVAT 434 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~~ 434 (434)
. ++++|+.||.+.+||+..++.+..+.+...|.+++|+|+.+.+.+..+..|+|||++++.+++
T Consensus 205 s---lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 205 S---LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred C---EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhh
Confidence 6 999999999999999999999999999999999999999955555555669999999988763
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=230.86 Aligned_cols=268 Identities=18% Similarity=0.300 Sum_probs=218.8
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeC
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (434)
.+++++.|.+|++|...+| .+.++++.....|+.+.+.||+++||+++... ||+||+.++...
T Consensus 12 iLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~--------------- 74 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPN--------------- 74 (311)
T ss_pred EEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCC---------------
Confidence 4677889999999999999 99999997788999999999999999998755 999999987542
Q ss_pred CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 201 ~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
...++.+|...|.++.|..+ .+++|++||+++|||++.. ...+ .-.|..+|.+
T Consensus 75 --------------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----~~qR-~~~~~spVn~ 129 (311)
T KOG0315|consen 75 --------------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----SCQR-NYQHNSPVNT 129 (311)
T ss_pred --------------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----ccch-hccCCCCcce
Confidence 12357889999999999888 9999999999999999984 3333 3346799999
Q ss_pred EEECCC--EEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe---
Q 013881 279 LVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY--- 350 (434)
Q Consensus 279 l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~--- 350 (434)
+..+++ .|+++..+|.|++||+.+..+...+. .....|.++... +.+|+.+...|..++|++........+.
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence 999875 69999999999999999987766654 345667777665 8899999999999999987643222111
Q ss_pred -eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC-ccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 351 -THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF-AERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
...+...++...++|+.. +|++++.|.+++||+.+++ +....+. |...+...+||.|| +|+||+.|+.+++|+
T Consensus 210 k~~ah~~~il~C~lSPd~k---~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVK---YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred heecccceEEEEEECCCCc---EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 112234577777877665 9999999999999999988 3333333 46789999999999 999999999999999
Q ss_pred ccCCccc
Q 013881 427 WCNGPVA 433 (434)
Q Consensus 427 ~~~g~~~ 433 (434)
+..++.+
T Consensus 287 ~~~~k~v 293 (311)
T KOG0315|consen 287 LSAGKEV 293 (311)
T ss_pred cccCcee
Confidence 9999865
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-33 Score=248.31 Aligned_cols=269 Identities=20% Similarity=0.332 Sum_probs=234.7
Q ss_pred cccceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 108 IKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 108 ~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
....|+|++|.. +.+++|+.||.+++|+... .++.+|..|+++|.+|.|+.+|+||++++.|+++.+||..+++..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 345899999964 4588899999999999775 688899999999999999999999999999999999999999999
Q ss_pred EEEecCCce-EEE--EeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 186 GVINLGGEV-GCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 186 ~~~~~~~~~-~~~--~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
+.+...... ..+ ..+..+...+.++.|+++.+...... ++.+|.+.|.++.|+|. +|++++.|+++++|.....
T Consensus 312 q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 999887665 323 34666777788999999999876655 88899999999999987 9999999999999998876
Q ss_pred CCccccceeecCccceEEEEEECC-----------CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEE
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVGA-----------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (434)
.....+.+|...|..+.|+| ..+++++.|++|++||+..+.++.+|..|+.+|++++|+ +.++
T Consensus 392 ----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 392 ----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred ----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 67788999999999999853 369999999999999999999999999999999999999 8899
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
++|+.||.|.+|++++.+..+.... ...+..++|...++ .|..+-.|+.+.+.|++
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~---kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGD---KLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCC---EEEEEecCCCceEEEec
Confidence 9999999999999988765554433 34589999987764 77778889999999875
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=255.26 Aligned_cols=316 Identities=21% Similarity=0.344 Sum_probs=242.7
Q ss_pred ccccceEEEEEeCC-cEEEecCCCeEEEEeCCCC-------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 107 ~~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
..+.+|-|+.|+++ .+++.+..+.+.||..... +.+.+++.+|-..|++|.|+.|.++|++|+.|-+++||+
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 44679999999887 4666778889999987643 457788899999999999999999999999999999999
Q ss_pred CCCCceEEEEecCC---ce-EEEEe--CCCEEEEEcCCcEEEEECCC-----------------------Cce-----E-
Q 013881 179 CASGQCAGVINLGG---EV-GCMIS--EGPWIFIGVTNFVKAWNTQT-----------------------NTD-----L- 223 (434)
Q Consensus 179 ~~~~~~~~~~~~~~---~~-~~~~~--~~~~l~~~~~~~i~~w~~~~-----------------------~~~-----~- 223 (434)
++..+........+ .+ .|+.. ...+..++.||.+.+|.... ++. .
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~ 253 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW 253 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE
Confidence 99887755544332 23 33332 33455567789999997651 110 0
Q ss_pred ------EecCCCCcEEEEEEeCC--EEEEEeCC-------------------------------------------CcEE
Q 013881 224 ------SLSGPVGQVYAMAVGND--LLFAGTQD-------------------------------------------GAIL 252 (434)
Q Consensus 224 ------~~~~~~~~v~~l~~~~~--~l~~g~~d-------------------------------------------g~i~ 252 (434)
-+......|++.+|++. +|++|-.. |.+.
T Consensus 254 ~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 254 YKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred EEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 01111244445555444 44444444 4455
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEE
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (434)
||+.... ..+...++|...+.+++++++ ++++|+.||.|+|||..++-|+.+|..|++.|+.+.|. ++.+++
T Consensus 334 VweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 334 VWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred EEEeecc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 5555444 445667899999999999754 99999999999999999999999999999999999998 899999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC-eEEEEeCCCCccccccc-ccCcEEEEE
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN-SVRFYDLPSFAERGKIF-AKQEIRAIQ 406 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~-~~~~v~~~~ 406 (434)
.+.||+|+.||+......+.+... .+....+++..|.+. ++++|+.|. .|.+|++++|+++..+. |+++|.+++
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGe---lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGE---LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred eecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCC---EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 999999999999888776655543 334555666555444 777777665 69999999999998876 689999999
Q ss_pred ecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 407 LGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 407 ~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
|+|++ .|++++.|.+|++||+-..
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EccccCeEEeccccceEEEEEeecc
Confidence 99999 9999999999999998754
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=228.64 Aligned_cols=276 Identities=20% Similarity=0.312 Sum_probs=240.8
Q ss_pred ccccccceEEEEE--eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
..-++++|..+.| ..+.+++.+.|++|++|++..+ .+++++.+|...|..++.+.|...|++++.|..|.+||+.+|
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 3456789999999 3446889999999999999999 999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+.++. +.+|.++|+.+.|+.+ .+++|+.|.++++||-++..
T Consensus 92 kv~Rr-------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 92 KVDRR-------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred eeeee-------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 98876 6789999999999988 99999999999999998765
Q ss_pred CccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vw 338 (434)
. +|++.+......|.++...+..+++|+.||++|.||++.|+.....-+ .+|+++.++ ++..++++.|+++++.
T Consensus 135 ~--ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 135 F--EPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred C--CccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeec
Confidence 4 889999999999999999999999999999999999999988766544 567888887 7899999999999999
Q ss_pred EcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCc--EEEEEecCCc-EEEE
Q 013881 339 FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQE--IRAIQLGPGG-LFFT 415 (434)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~spdg-~l~s 415 (434)
|-.+++.+.....|.....-...++..... .+++|++||.|++||+.....+..+.+.+. |.+++++|.- .|++
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdt---hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDT---HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccce---eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence 999999999888888776666666654433 899999999999999999999988887443 6899999988 6666
Q ss_pred eCCCCCEEEEE
Q 013881 416 GDGTGQVRVWQ 426 (434)
Q Consensus 416 ~~~dg~i~iwd 426 (434)
+...+ +.+|-
T Consensus 288 A~~~~-~~~~~ 297 (307)
T KOG0316|consen 288 ATGHG-DLFWY 297 (307)
T ss_pred ecCCc-eecee
Confidence 65544 45553
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=236.29 Aligned_cols=313 Identities=16% Similarity=0.219 Sum_probs=256.6
Q ss_pred cccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
....|+.+|.++...++. +++|+.|..-++|++.++ +....+.+|++.|+++.|+.|+.+||||+.+|.|+||+..+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 356899999999997643 777999999999999999 79999999999999999999999999999999999999999
Q ss_pred CceEEEEe-cCCceEEEE--eCCCEEEEEc-CCcEEEEECCC-CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 013881 182 GQCAGVIN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (434)
Q Consensus 182 ~~~~~~~~-~~~~~~~~~--~~~~~l~~~~-~~~i~~w~~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vw 254 (434)
+.....+. ....+..+. +...++++|. ||.+-+|.+.. +....+.+|..++++=.|.|+ .++++..||+|++|
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~W 217 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVW 217 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEE
Confidence 98887775 334444443 4667777765 89999999998 455588999999999999999 99999999999999
Q ss_pred EcCCCCCccccceeecC-ccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEc--------cccccEEEEEEc-
Q 013881 255 KFNVTTNCFEPAASLKG-HSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT--------EHTSVVMSLLCW- 322 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~l~~~- 322 (434)
++.++ .++..+.+ ......++.+ .+..++.|+.++.+++-+..+++.+.... .+...+.++.+.
T Consensus 218 n~ktg----~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 218 NPKTG----QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred ecCCC----ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99998 44444432 1223344444 47789999999999999999999887776 344445555544
Q ss_pred --C--CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-
Q 013881 323 --D--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF- 397 (434)
Q Consensus 323 --~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 397 (434)
. .+.++|+.||+|.|||+..... +....|. ..|+.+.|.+ .+ +|++++.+|.|++||.++++++..+.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he--~~V~~l~w~~-t~---~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTL-RHICEHE--DGVTKLKWLN-TD---YLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred cccccchhhcccccceEEEEecccchh-heeccCC--CceEEEEEcC-cc---hheeeccCceEEeeeccccceEEEEec
Confidence 2 4788999999999999976543 3333333 4599999987 33 79999999999999999999998876
Q ss_pred ccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 398 AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 398 ~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
|...|.+++++|++ +++|++.|++.+||++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 57889999999999 99999999999999875
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-32 Score=265.19 Aligned_cols=279 Identities=28% Similarity=0.472 Sum_probs=238.8
Q ss_pred cccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCce--EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC-
Q 013881 106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA- 180 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~--~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~- 180 (434)
..+...|.|+.|+++. +++++.++.+++|+.... + +++.+.+|...|.+++|+|+++++++++.|++|+|||+.
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 3446799999996654 556779999999999766 5 788889999999999999999999999999999999994
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~ 258 (434)
.+..+++ +.+|...|++++|+++ ++++|+.|++|++||+++
T Consensus 235 ~~~~~~~-------------------------------------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 235 DGRNLKT-------------------------------------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred CCeEEEE-------------------------------------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 4455544 6799999999999998 999999999999999999
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe--EEEEEcccccc--EEEEEEc--CCEEEEEe
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSV--VMSLLCW--DQFLLSCS 330 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~--v~~l~~~--~~~l~s~s 330 (434)
+ ++...+.+|...|.+++++ +++|++++.|+.|++||+.+++ ++..+..+... ++++.|+ +.++++++
T Consensus 278 ~----~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 278 G----ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred C----eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 7 8899999999999999996 5689999999999999999999 67777776655 8999997 78999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEec
Q 013881 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLG 408 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~s 408 (434)
.|+.+++||+.....+..+..+... +.++.......++.++++|+.|+.|++|++.++..+..+.. ...+..+.++
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC
Confidence 9999999999999888888877765 22322222244556999999999999999999888888765 4788999999
Q ss_pred CCc-EEEEeC--CCCCEEEEEcc
Q 013881 409 PGG-LFFTGD--GTGQVRVWQWC 428 (434)
Q Consensus 409 pdg-~l~s~~--~dg~i~iwd~~ 428 (434)
|.. ++++++ .|+.|++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 999 888888 79999999865
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=255.18 Aligned_cols=307 Identities=18% Similarity=0.311 Sum_probs=261.9
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEc-cCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~-s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (434)
....+++.+.|..+.++|.++. ++.+.+-|..+.|.+|+| .|+.++||.++..+.+|++++.+..+.-..-+.+.+.+
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlS 370 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLS 370 (775)
T ss_pred ccCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheee
Confidence 5667889999999999999997 999999999999999998 67889999999999999999999888733334455666
Q ss_pred EE--eCCCEEEEEc-CCcEEEEECCCCceE-----EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc---
Q 013881 197 MI--SEGPWIFIGV-TNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC--- 262 (434)
Q Consensus 197 ~~--~~~~~l~~~~-~~~i~~w~~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~--- 262 (434)
+. ..+.++++++ |..+++|.++.+... ...+|...|.+++++.. +|++++.|+++++|++......
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 65 4665777655 889999988544432 45789999999999655 9999999999999999873222
Q ss_pred --cccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEE
Q 013881 263 --FEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (434)
Q Consensus 263 --~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (434)
+........|...|.++++.+ .++++||.|.+.+||++++.+...++.+|...|.++.|+ ++.++++|.|++|+
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 112224467999999999875 489999999999999999999999999999999999999 56999999999999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~ 414 (434)
||.+.+..+++.+.+|.. .|....|..++. .|++++.||-|++|++++.+++..+. |.+.|++++.+|.. .++
T Consensus 531 IW~is~fSClkT~eGH~~--aVlra~F~~~~~---qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTS--AVLRASFIRNGK---QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred EEEeccceeeeeecCccc--eeEeeeeeeCCc---EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence 999999999999988875 477887775554 89999999999999999999999886 68999999999999 999
Q ss_pred EeCCCCCEEEEEccCC
Q 013881 415 TGDGTGQVRVWQWCNG 430 (434)
Q Consensus 415 s~~~dg~i~iwd~~~g 430 (434)
||+.||.|.+|.=.+.
T Consensus 606 tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 606 TGGGDGRIIFWKDVTE 621 (775)
T ss_pred ecCCCeEEEEeecCcH
Confidence 9999999999985544
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.2e-34 Score=253.77 Aligned_cols=279 Identities=19% Similarity=0.287 Sum_probs=239.3
Q ss_pred ccccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 103 NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
-....|...|+++.|.+. -++.++.|+.|+||++.+..++++++.||..+|.+++|+++|..++|+|.|+.|++||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 346788999999999662 35668899999999999755999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEc
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKF 256 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~ 256 (434)
++|+++..+... ..++++.|+|+ .+++|+.|+.|+.||+
T Consensus 288 ETG~~~~~f~~~--------------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 288 ETGQVLSRFHLD--------------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred ccceEEEEEecC--------------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 999999877643 34566777776 8999999999999999
Q ss_pred CCCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEE---ccccccEEEEEEcCCEEEEEeC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCWDQFLLSCSL 331 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~l~s~s~ 331 (434)
+++ +.+..+..|-+.|..+.| .+.++++.+.|++++||+.+..-.++.+ ..|+-+...+...+.+++.-+.
T Consensus 330 Rs~----kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 330 RSG----KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred cch----HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 998 788889999999999999 4679999999999999999987665543 3466666666666899999999
Q ss_pred CCcEEEEEcCCCC---ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEe
Q 013881 332 DKTIKVWFATDSG---NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQL 407 (434)
Q Consensus 332 dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 407 (434)
|..|.+|.+...- ..+.+.+|........+.|+|++. +|++|..||.+.+||.++-+++..+.. .+.+..+.|
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~---~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR---TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC---eEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 9999999875432 234556666667788888988766 999999999999999999999988875 588999999
Q ss_pred cCCc--EEEEeCCCCCEEEEE
Q 013881 408 GPGG--LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 408 spdg--~l~s~~~dg~i~iwd 426 (434)
+|.. .+||++.||.|++|+
T Consensus 483 HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCcceeEecccCceeEecC
Confidence 9987 999999999999996
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-33 Score=261.52 Aligned_cols=235 Identities=23% Similarity=0.374 Sum_probs=209.6
Q ss_pred cceEEEEEeCCc--EEEecCCCeEEEEeCCCC------------------------------ceEEEEecCccccEEEEE
Q 013881 110 TDILCRNWVQGN--CMYGEKCKFLHSWTVGDG------------------------------FKLLTQLEGHQKVVSGIT 157 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~------------------------------~~~~~~l~~h~~~V~~l~ 157 (434)
..++|..|+++. ++.|-.|..|++|.+... ....+++-||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 378999998775 455669999999998731 012455789999999999
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE
Q 013881 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV 237 (434)
Q Consensus 158 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~ 237 (434)
|+|+.++|+++|.|++||+|.+.+..++-. ..+|..+|+.+.|
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~-------------------------------------y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-------------------------------------YKGHLAPVWDVQF 501 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEE-------------------------------------ecCCCcceeeEEe
Confidence 999999999999999999999998876643 5689999999999
Q ss_pred eCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEcccc
Q 013881 238 GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHT 313 (434)
Q Consensus 238 ~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 313 (434)
+|. ++++++.|++.++|..... .+.+.+.+|-..|.|+.|+++ ++++||.|.+||+||+.+|..++.|.+|.
T Consensus 502 ~P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~ 577 (707)
T KOG0263|consen 502 APRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK 577 (707)
T ss_pred cCCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence 998 9999999999999999886 789999999999999999865 89999999999999999999999999999
Q ss_pred ccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 314 SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 314 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
++|.+++++ |.+|++|+.|+.|++||+..+..+..+..| ...+.++.|+.++. +|++|+.|++|++||+..-
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCC---EEEecCCCCeEEEEEchhh
Confidence 999999999 899999999999999999999888888888 45789999977665 9999999999999998653
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-33 Score=263.90 Aligned_cols=272 Identities=18% Similarity=0.307 Sum_probs=225.4
Q ss_pred EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 142 ~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
+..++..-...++|..|++|+.+||.|-.|..|++|.+...+.. .++......-+ =..+.|-.+.+.|.....
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~~------d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSNI------DTESADVDVDMLDDDSSG 442 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccchhhhccc------cccccchhhhhccccCCc
Confidence 33444444578999999999999999999999999999854322 22211110000 001112224444544443
Q ss_pred e-EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEE
Q 013881 222 D-LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIR 296 (434)
Q Consensus 222 ~-~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~ 296 (434)
. .++.+|.++|+...|+|+ +|+++++|+++++|.+.+. ..+....+|..+|..+.|++. +|++++.|++.+
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 3 469999999999999999 9999999999999999987 678888999999999999854 899999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (434)
+|.....++++.+.+|.+.|.|+.|+ ..|+++||.|.+|++||+.++..++.+.+|. .++.+++++|.+. +|+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~--~~V~al~~Sp~Gr---~La 593 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK--GPVTALAFSPCGR---YLA 593 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC--CceEEEEEcCCCc---eEe
Confidence 99999999999999999999999999 5699999999999999999999999888866 4699999988554 999
Q ss_pred EEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 375 CSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 375 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+|+.||.|.+||+.+++++..+. |.+.|.++.|+.|| .||+|+.|.+|++||+..
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999888765 68899999999999 999999999999999864
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-31 Score=241.47 Aligned_cols=274 Identities=28% Similarity=0.473 Sum_probs=232.1
Q ss_pred cccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
..|+.+|.|+.|+++ .+++++.++.|++|++.++ +....+..|...+..+.|+|++++|++++.|+.|++||+.+++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 368899999999774 5677888999999999987 7888889999999999999999999999999999999998765
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.+.. +..|...+.++.|.++ ++++++.++.|.+||+...
T Consensus 85 ~~~~-------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 125 (289)
T cd00200 85 CVRT-------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-- 125 (289)
T ss_pred ceEE-------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--
Confidence 4433 4467778999999986 7777777999999999865
Q ss_pred ccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC--CEEEEEeCCCcEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKV 337 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~v 337 (434)
+....+..|...+.++.+++ .++++++.|+.|++||+++++.+..+..|...+.++.+.+ +.+++++.|+.|++
T Consensus 126 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred --EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 56677778999999999976 5677777799999999999999999999999999999984 48999999999999
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEE
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s 415 (434)
||++.......+..+. ..+..+.+.++ +.++++++.|+.|++|++.+++....+. +...|.+++|+|++ .|++
T Consensus 204 ~d~~~~~~~~~~~~~~--~~i~~~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 204 WDLSTGKCLGTLRGHE--NGVNSVAFSPD---GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EECCCCceecchhhcC--CceEEEEEcCC---CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 9998766555543333 36888888776 3378877779999999999887776665 46789999999998 9999
Q ss_pred eCCCCCEEEEE
Q 013881 416 GDGTGQVRVWQ 426 (434)
Q Consensus 416 ~~~dg~i~iwd 426 (434)
++.||.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-33 Score=241.03 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=235.4
Q ss_pred cccccccceEEEEEeCCc--EEEecCCCeEEEEeCC--CCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
-...|.++|..+.|++++ +++++.|.+..+|.+. ..+++.+++.+|..+|..|.||||.++|++++.|..+++||+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 356889999999997764 6678899999999876 336789999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
.+|.+...+. .++...+.+.+|.|| .+++|+.|+.|..||++
T Consensus 299 ~tgd~~~~y~------------------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 299 DTGDLRHLYP------------------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred Ccchhhhhcc------------------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9998876543 235678889999999 99999999999999998
Q ss_pred CCCCccccceeecCcc-ceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC
Q 013881 258 VTTNCFEPAASLKGHS-LAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (434)
... ....++-. ..|.+++. +|.++++.+.|..|++++.++...+..+ ....+|+++..+ ++++++--.+
T Consensus 343 gn~-----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 343 GNI-----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred cch-----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEccc
Confidence 752 22333322 34666654 6889999999999999999876655444 345678888887 6788888889
Q ss_pred CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG 411 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg 411 (434)
..|.+||+.+...+..+.++.....+..-||- +.+..++++|++|+.|+||+..+++++..+. |...|++++|+|..
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg--g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG--GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccC--CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 99999999988888888888887777766665 3444699999999999999999999999987 46789999999988
Q ss_pred --EEEEeCCCCCEEEEEccC
Q 013881 412 --LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 412 --~l~s~~~dg~i~iwd~~~ 429 (434)
++|++++||+|+||....
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 999999999999998763
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=250.00 Aligned_cols=273 Identities=18% Similarity=0.293 Sum_probs=246.5
Q ss_pred cccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
..+...|-|+++.+.. ++++--.|.|.|||.++. .+++.++-..-+|.+..|-+..+++++|+.|..|+||+..+++
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 3467789999997765 666778999999999997 9999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.++. +..|...|.+++.+|. ++++++.|-.|++||.+..
T Consensus 89 kV~~-------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-- 129 (794)
T KOG0276|consen 89 KVKT-------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-- 129 (794)
T ss_pred eeEE-------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--
Confidence 8776 5679999999999999 9999999999999999876
Q ss_pred ccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CC---EEEEEeCCCc
Q 013881 262 CFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQ---FLLSCSLDKT 334 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~---~l~s~s~dg~ 334 (434)
+.+.+++.+|..-|++++++| +.+++++.|++|+||.+.+..+..++++|...|.++.+- +. +|++|+.|.+
T Consensus 130 -wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 130 -WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred -eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 578899999999999999974 589999999999999999999999999999999999997 33 9999999999
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-E
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-L 412 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~ 412 (434)
|+|||..+..+++.+.+|.. .+..++|+|.-+ ++++|++||+++||+..+.++...+. ....|.+|+-.+.+ .
T Consensus 209 iKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lp---iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELP---IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred EEEeecchHHHHHHhhcccc--cceEEEecCCCc---EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCe
Confidence 99999999999999988875 488888888776 99999999999999999998887766 47889999998888 9
Q ss_pred EEEeCCCCCEEE
Q 013881 413 FFTGDGTGQVRV 424 (434)
Q Consensus 413 l~s~~~dg~i~i 424 (434)
++.|.+.|.|.|
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 898988887654
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=245.03 Aligned_cols=243 Identities=22% Similarity=0.335 Sum_probs=211.5
Q ss_pred ccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
...|.+.|.|++|...-+++|+.|.+|+|||++++ +++.++-+|.+.|..+.|+ ..+++|++.|.++.+||+.....
T Consensus 233 L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg-e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG-EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred hhcCCCcEEeeeccceEEEecCCCceEEEEeccCC-chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH
Confidence 46899999999999999999999999999999999 9999999999999999996 46899999999999999876532
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccc
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
+.. ...+.+|...|..+.|+..++++++.|.+|++|++.+. +
T Consensus 310 it~----------------------------------rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~----e 351 (499)
T KOG0281|consen 310 ITL----------------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC----E 351 (499)
T ss_pred HHH----------------------------------HHHHhhhhhheeeeccccceEEEecCCceEEEEeccce----e
Confidence 210 11367999999999999999999999999999999998 8
Q ss_pred cceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCC
Q 013881 265 PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 344 (434)
.+.++.+|...|.|+.+.+.++++|+.|.+|++||+..|.+++.+++|+.-|.++.|+.+.+++|+.||+|+|||+....
T Consensus 352 fvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 352 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred eehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ceEEE-------eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 345 NLEVT-------YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 345 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
..... ....+...+..+.|.. ..+++++.|.+|.|||...+...
T Consensus 432 dpra~~~~~Cl~~lv~hsgRVFrLQFD~-----fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 432 DPRAPASTLCLRTLVEHSGRVFRLQFDE-----FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CCcccccchHHHhhhhccceeEEEeecc-----eEEEeccCCCeEEEEEcCCCCcc
Confidence 43211 1112234577776632 36888999999999999876554
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=221.93 Aligned_cols=245 Identities=21% Similarity=0.289 Sum_probs=215.6
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+.++.+..|+++|.++.|+-||+|.++++.|.+|++|+...+.++++
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt--------------------------------- 54 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT--------------------------------- 54 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---------------------------------
Confidence 46678899999999999999999999999999999999999998877
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIR 296 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 296 (434)
..+|...|..++.+.+ .+++++.|..|.+||+.++ +..+.+.+|...|..+.|+. ..+++|+.|.+++
T Consensus 55 ----YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 55 ----YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred ----ecCCCceeeeccccccccccccCCCCceEEEEEcccC----eeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 4578888888887766 9999999999999999999 88999999999999999985 4799999999999
Q ss_pred EEeCCC--CeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEE
Q 013881 297 VWNLET--LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374 (434)
Q Consensus 297 vwd~~~--~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (434)
+||-++ .++++.+......|.++...+..|++|+.||+++.||++.+....-... .++.+++++++++ ..+
T Consensus 127 ~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g----~pit~vs~s~d~n---c~L 199 (307)
T KOG0316|consen 127 LWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG----HPITSVSFSKDGN---CSL 199 (307)
T ss_pred EEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC----CcceeEEecCCCC---EEE
Confidence 999876 6789999999999999999999999999999999999998765444433 4688999987766 889
Q ss_pred EEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 375 CSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 375 ~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+++-|++|++.|-.+++++..+.. ...-...+++... .+++|++||.|++||+.++.++
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 999999999999999999988774 2233455677666 9999999999999999988764
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.3e-31 Score=271.67 Aligned_cols=289 Identities=15% Similarity=0.207 Sum_probs=224.1
Q ss_pred CCeEEEEeCCCCceEEEE-----ecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC----c----eEEEEecCCce
Q 013881 128 CKFLHSWTVGDGFKLLTQ-----LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG----Q----CAGVINLGGEV 194 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~-----l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~----~----~~~~~~~~~~~ 194 (434)
+|.+++|+..+- +.... +..|.+.|++++|+|++++||+|+.|++|+|||+... . ....+.....+
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 667888887754 43333 3458999999999999999999999999999998642 1 12233334445
Q ss_pred EEEEe---CCCEEEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 195 GCMIS---EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 195 ~~~~~---~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
.++.+ .+.++++ +.++.|++||+.+++.+ .+.+|...|++++|++ + +|++|+.|+.|++||++.. ..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEE
Confidence 55543 3455555 55999999999987765 6788999999999986 3 8999999999999999876 445
Q ss_pred eeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCe-EEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcC
Q 013881 267 ASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~ 341 (434)
..+..+ ..+.++.|. +.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. +.+|++++.|++|++||++
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 555544 578888873 6799999999999999998865 577888999999999997 7899999999999999997
Q ss_pred CC------CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc--------------cccCc
Q 013881 342 DS------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--------------FAKQE 401 (434)
Q Consensus 342 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~ 401 (434)
.. ..+..+..+. ..+..+.+.+++. +|++|+.|+.|++|+......+..+ .+...
T Consensus 691 ~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 691 MSISGINETPLHSFMGHT--NVKNFVGLSVSDG---YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred CCccccCCcceEEEcCCC--CCeeEEEEcCCCC---EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 53 2334444443 3466677776544 9999999999999998654332111 12456
Q ss_pred EEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 402 IRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 402 v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
|.+++|+|++ .|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999 9999999999999996
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=236.81 Aligned_cols=251 Identities=24% Similarity=0.428 Sum_probs=221.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~--------------------------------- 145 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS--------------------------------- 145 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh---------------------------------
Confidence 56677889999999999999999999999999999999999987543
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIR 296 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~ 296 (434)
+.+|...+.++.|+.. ++++++.|-.+++||+.+. ++.+..+.+|...|.++.+ .++++++++.|.+|+
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH---HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 7899999999999877 9999999999999999875 4778888899999988877 478999999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC--------
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD-------- 366 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 366 (434)
.|++.++-++.++.+|...|..+... +..+++++.|.+|++|-+.+..+...+..|.+. +-+++|.|.
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~--vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP--VECIAWAPESSYPSISE 296 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc--eEEEEecccccCcchhh
Confidence 99999999999999999999999988 678999999999999999888777777766654 555555443
Q ss_pred ----CCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 367 ----SEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 367 ----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.++.+++.+++.|++|++||+.++..+.++. |.+.|..++|+|.| +|+++.+|+++++||+++++++
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 2234699999999999999999999998876 57889999999999 9999999999999999998754
No 38
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-31 Score=247.21 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=242.6
Q ss_pred CCCCCCCCccccccccc--ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC
Q 013881 94 AGNSKNSNINNRAVIKT--DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD 171 (434)
Q Consensus 94 ~~~~~~~~~~~~~~~~~--~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d 171 (434)
..+..+.++...+...+ ...-++|+..+.++.+.+..|++|+..++ +.......++..|+++.|+++|.+|+.|..+
T Consensus 160 ~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 160 KIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred cccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecC
Confidence 33444445555544443 34457889888999999999999999998 6555555568999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC-CCCcEEEEEEeCCEEEEEeCCCc
Q 013881 172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGNDLLFAGTQDGA 250 (434)
Q Consensus 172 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~~l~~g~~dg~ 250 (434)
|.|.|||..+.+.+.. +.+ |...|-+++|....+.+|+.|+.
T Consensus 239 g~v~iwD~~~~k~~~~-------------------------------------~~~~h~~rvg~laW~~~~lssGsr~~~ 281 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTRT-------------------------------------LRGSHASRVGSLAWNSSVLSSGSRDGK 281 (484)
T ss_pred CeEEEEehhhcccccc-------------------------------------ccCCcCceeEEEeccCceEEEecCCCc
Confidence 9999999988876655 344 89999999999999999999999
Q ss_pred EEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCE
Q 013881 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQF 325 (434)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~ 325 (434)
|..+|++.... ....+.+|...|+.+.|+ +.++++|+.|+.+.|||....+++..+..|.+.|.+++|+ ...
T Consensus 282 I~~~dvR~~~~---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 282 ILNHDVRISQH---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred EEEEEEecchh---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 99999998743 222488999999999996 5699999999999999999999999999999999999998 678
Q ss_pred EEEEe--CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE-EeCCCeEEEEeCCCCccccccc-ccCc
Q 013881 326 LLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC-SCNDNSVRFYDLPSFAERGKIF-AKQE 401 (434)
Q Consensus 326 l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~ 401 (434)
||+|+ .|+.|++||..++..+...... ..|..+.|++.... ++.+ |..++.|.||+.++.+.+..+. |...
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kE--i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKE--LLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCCE--EEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 99876 5999999999988766655544 56999999987642 3333 4467899999999988887765 6888
Q ss_pred EEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 402 IRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 402 v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
|..++++||| .+++|+.|.++++|++-.
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999 999999999999999876
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-30 Score=229.90 Aligned_cols=322 Identities=17% Similarity=0.256 Sum_probs=260.6
Q ss_pred ccccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 103 NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
+....|...|+.++|-+. .+++++.|++|-+|+-.. ++...++..|..-|.++.|+|||.+++|++.||+|.+||=
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 567788889999999554 589999999999998544 6888899999999999999999999999999999999999
Q ss_pred CCCceEEEEec----CCceEEEEe--CC-CEEEEEcCCcEEEEECCCCceEEe-c-C--CCCcEEEEEEeCCEEEEEeCC
Q 013881 180 ASGQCAGVINL----GGEVGCMIS--EG-PWIFIGVTNFVKAWNTQTNTDLSL-S-G--PVGQVYAMAVGNDLLFAGTQD 248 (434)
Q Consensus 180 ~~~~~~~~~~~----~~~~~~~~~--~~-~~l~~~~~~~i~~w~~~~~~~~~~-~-~--~~~~v~~l~~~~~~l~~g~~d 248 (434)
.+++.+..+.. .+.+.++.+ ++ +++.++.|.++++||+.+.+.... . + -..+-..+.|..+.|++.+.+
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 99999999983 345666654 44 455567799999999999987632 1 1 224556677778899999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEE-ccccccEEEEEEcC-C
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCWD-Q 324 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~~-~ 324 (434)
|+|.+++.... .+...+.+|...|+++..+ +.+|++|+.||.|.-||..++..-+.. +.|...|.+++..+ +
T Consensus 300 G~in~ln~~d~----~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 300 GTINYLNPSDP----SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cEEEEecccCC----ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 99999999887 6788899999999999986 569999999999999999998876554 67999999999996 8
Q ss_pred EEEEEeCCCcEEEEEcCCCCce-----------EEEee--------------------e------cCCccEEEEEeccCC
Q 013881 325 FLLSCSLDKTIKVWFATDSGNL-----------EVTYT--------------------H------NEEHGVLALCGMPDS 367 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~-----------~~~~~--------------------~------~~~~~~~~~~~~~~~ 367 (434)
.+++.+.|.++++.++...... ..+.. + .-.....+++.+|+.
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 9999999999999977432110 00000 0 001123345555544
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCccc---ccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAER---GKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
. .+++|+.|+.|+||.+...+.. ..+.|..+|+++++|||+ +||+++..+.+.+||+.+.+.
T Consensus 456 ~---~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 456 S---EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred C---EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 4 8999999999999999875543 345689999999999999 999999999999999998775
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=225.47 Aligned_cols=279 Identities=22% Similarity=0.310 Sum_probs=239.1
Q ss_pred cccccccceEEEEEeC---Cc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 104 NRAVIKTDILCRNWVQ---GN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~---~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
....|..||..++|++ +. ++.++.|+.-.+-+-++| .-+-+|.||+++|.+..++.+...-|+++.|-+-+|||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3567888999999954 33 566889998888888898 89999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 179 CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
.-+|..+..+ .|..-|.+++|+.+ .|++|+.+..++|||+
T Consensus 88 a~tgdelhsf--------------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 88 AVTGDELHSF--------------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhhhhhhh--------------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 9998877654 47778899999988 9999999999999999
Q ss_pred CCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDK 333 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg 333 (434)
+... .+...+.+|+..|..+.|- .+.+++.+.|++||+||.++++.++++. ...+|+++..+ ...+++....+
T Consensus 130 n~p~---App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 130 NRPK---APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred cCCC---CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCc
Confidence 8875 5677889999999999884 5678888999999999999999999985 56778888888 56777778889
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc--cccCcEEEEEecCCc
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--FAKQEIRAIQLGPGG 411 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~spdg 411 (434)
.|++||..+.+.++.... +..|.+....|... ++++|++|..++.||..+++.+..+ .|.++|.++.|+|||
T Consensus 206 sV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~---~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKM---PCNVESASLHPKKE---FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred eeEEeccccccceeeccC---ccccccccccCCCc---eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 999999988766655443 33466666666553 8999999999999999999998875 468999999999999
Q ss_pred -EEEEeCCCCCEEEEEccCCc
Q 013881 412 -LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd~~~g~ 431 (434)
..++|++||+|+||....++
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 99999999999999987765
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=228.23 Aligned_cols=289 Identities=18% Similarity=0.287 Sum_probs=242.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC-CceEEEEe--CCCEEEEEc-CCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMIS--EGPWIFIGV-TNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~-~~~i~~w~ 216 (434)
.-+..|..|++.|.+++.+|+.++++||+.|..-.||++.+++....+..+ ..+.++.+ ++.+|+++. +|.|++|.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 456788999999999999999999999999999999999999987777655 45666654 788888875 99999999
Q ss_pred CCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecC
Q 013881 217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM 291 (434)
Q Consensus 217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 291 (434)
..++... .+......|.-+.|+|. .|++|+.||.+.+|.+... .....+.+|..++++=.| +|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEEEec
Confidence 9998876 66667888999999998 9999999999999999886 567888999999987555 6789999999
Q ss_pred CCcEEEEeCCCCeEEEEEccc-cccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEee------ecCCccEEEEE
Q 013881 292 DNSIRVWNLETLQCIQTLTEH-TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT------HNEEHGVLALC 362 (434)
Q Consensus 292 dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~ 362 (434)
||+|++||+.+++++..+..- .....++.++ +..++.|+.++.+++-+..+++.+..... ...+..+.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999999999999888742 2334555555 77888899999988887766654443331 12334566777
Q ss_pred eccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.|....-++.|+|+-||+|.|||+...+.+....|...|+.+.|-++.+|++++.+|.|++||.++|++.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceE
Confidence 77777777799999999999999999999999999999999999999449999999999999999999864
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-30 Score=242.09 Aligned_cols=322 Identities=20% Similarity=0.326 Sum_probs=259.8
Q ss_pred ccccccccceEEEEEe--CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~--~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
-..+.|+..|+|+.|. ...+++|+.|+.|.+||+-.. .-+..++||++.|+..-|..+.++|++.+.|+.|++||++
T Consensus 101 ~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E-~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 101 ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE-EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeecccccceEEEEEcccCceEeecCCCccEEEEEeccc-eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 3456799999999994 456888999999999999876 7888999999999999999989999999999999999999
Q ss_pred CCceEEEEec-CCceEEEEeCC-CEEEEEcCCcEEEEECCCCc-------------------------------------
Q 013881 181 SGQCAGVINL-GGEVGCMISEG-PWIFIGVTNFVKAWNTQTNT------------------------------------- 221 (434)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~~~i~~w~~~~~~------------------------------------- 221 (434)
+..|..+.-. ..++..+.... .+++++.++.+++|++....
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 9999877654 45666666554 45556678899999871110
Q ss_pred --------------------------------------------------------------------------------
Q 013881 222 -------------------------------------------------------------------------------- 221 (434)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (434)
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence
Q ss_pred --------------------------eEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccc
Q 013881 222 --------------------------DLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274 (434)
Q Consensus 222 --------------------------~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 274 (434)
.+.+.+|...|.+++++.+ .++..+..+.|++|+..+. ++++++...-.
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~----kciRTi~~~y~ 415 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL----KCIRTITCGYI 415 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCc----ceeEEeccccE
Confidence 1245678899999999999 5555566789999999987 77887776522
Q ss_pred eEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC-----CceE
Q 013881 275 AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS-----GNLE 347 (434)
Q Consensus 275 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~-----~~~~ 347 (434)
-..++.+.++++++|...|.+.+||+.+...+.++++|.+.|.+++.. +..+++|+.|.+|++||..-. ...+
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 233344456799999999999999999999999999999999999887 679999999999999986421 1111
Q ss_pred -----EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCC
Q 013881 348 -----VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 348 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg 420 (434)
......-+..+.++.++|++. +|+++--|++|+||-+++.+....+. |.-+|.+|.+|||+ +++||+.|.
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~Spdgk---~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSVSPDGK---LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred eeeeccceEEeccccEEEEEEcCCCc---EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 111222345688999987766 99999999999999999988776655 68899999999999 999999999
Q ss_pred CEEEEEccCCcc
Q 013881 421 QVRVWQWCNGPV 432 (434)
Q Consensus 421 ~i~iwd~~~g~~ 432 (434)
.|+||-+.=|.+
T Consensus 573 nVKiWGLdFGDC 584 (888)
T KOG0306|consen 573 NVKIWGLDFGDC 584 (888)
T ss_pred ceEEeccccchh
Confidence 999999876653
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.7e-31 Score=226.66 Aligned_cols=288 Identities=21% Similarity=0.292 Sum_probs=230.8
Q ss_pred ccccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC---CCCEEEEEECCCcEEEEEC
Q 013881 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~s~s~dg~v~iwd~ 179 (434)
...-.|++-|..+.-..+-+++|+.||.+++||... +.+.++.||.++|.+++|.- ....|++++.|.++++|.+
T Consensus 99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cccccchhhhhhhcccCceEEEeecCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 334455666666666677899999999999999875 78899999999999998843 3346999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
+.++..... .....+|...|-++...++ .+++|+.|..|.+|+..
T Consensus 177 ~~~~~~~~~---------------------------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 177 NVGENKVKA---------------------------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred cCchhhhhH---------------------------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 877543211 0123489999999998887 99999999999999932
Q ss_pred CCC---------------------CccccceeecCccceEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEcccccc
Q 013881 258 VTT---------------------NCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315 (434)
Q Consensus 258 ~~~---------------------~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 315 (434)
... ....++..+.+|..+|.++.|. ...+++++.|.+|+.||+.++..+.++.. ...
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ks 302 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKS 302 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-Ccc
Confidence 210 1134667889999999999997 46899999999999999999999988865 456
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc-
Q 013881 316 VMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA- 391 (434)
Q Consensus 316 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 391 (434)
..++... .++|++|+.|..|++||.+++.. +.......+...+.++.++|... .+|++++.|+++++||+++.+
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--FQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--eEEEEEecCCeEEEEEeccCCC
Confidence 7788877 57999999999999999998753 22222233345899999998755 589999999999999999877
Q ss_pred cccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 392 ERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 392 ~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
++..+. |.+.|.++.|...+.+++|+.|.+|+|+.-.
T Consensus 381 plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 381 PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 666654 6889999999977799999999999998754
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-30 Score=247.79 Aligned_cols=275 Identities=17% Similarity=0.322 Sum_probs=235.8
Q ss_pred ceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 111 ~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
.+--+.|.+.. ++++--.|.|.+||..-+ .++..|.+|.++|..++|+|++.+++||+.|-.|+||+..+.+++.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft- 88 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT- 88 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh-
Confidence 44556675554 677778999999999988 89999999999999999999999999999999999999999888754
Q ss_pred ecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
+.+|...|..+.|++. .+++++.|.+|+||+..+. .++
T Consensus 89 ------------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----~~i 128 (1202)
T KOG0292|consen 89 ------------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----KCI 128 (1202)
T ss_pred ------------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----ceE
Confidence 7899999999999998 9999999999999999998 889
Q ss_pred eeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCC--------C---------------------eEEEEEcccccc
Q 013881 267 ASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET--------L---------------------QCIQTLTEHTSV 315 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~--------~---------------------~~~~~~~~~~~~ 315 (434)
..+.+|..-|+|-.|.+ +.++++|.|.+|||||+.. + -..+.+.+|...
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999999999986 6899999999999999752 1 012457789999
Q ss_pred EEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 316 VMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 316 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
|.-++|++ ..|++|+.|..|++|.+...+....-....+...+.++-|+|..+ ++++.++|++|+|||+...+.+
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc---eeEecCCCccEEEEecccccce
Confidence 99999997 799999999999999987765544433334446788999988666 8999999999999999999988
Q ss_pred ccccc-cCcEEEEEecCCcEEEEeCCCCCEEEEEccCC
Q 013881 394 GKIFA-KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 394 ~~~~~-~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g 430 (434)
..+.. .+..+.++.+|..-|++++.|+-+.||.++.+
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE 323 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc
Confidence 88876 67889999999995555666777889988754
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=9.2e-30 Score=208.67 Aligned_cols=246 Identities=17% Similarity=0.327 Sum_probs=209.3
Q ss_pred cceEEEEEeCC-cEEEecCCCeEEEEeCCCCce-EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 110 TDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFK-LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 110 ~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~-~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
..|+.+...++ ..+++.....|++||+.++.. ++.++.+|++.|+++.|..+|+.++|||+||+++|||++...+.+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~ 120 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN 120 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh
Confidence 37888888555 456666778999999997644 8999999999999999999999999999999999999999999999
Q ss_pred EecCCceEEEEe--CCCEEEE-EcCCcEEEEECCCCceE--EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 188 INLGGEVGCMIS--EGPWIFI-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 188 ~~~~~~~~~~~~--~~~~l~~-~~~~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
++...++.++.. +..-|++ ..++.|++||+...... .+......|.++...++ +++.+...|..++|++-...
T Consensus 121 ~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 121 YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 999988888764 4444444 55899999999887544 34555678999999888 89999999999999987643
Q ss_pred C--ccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCC-eEEEEEccccccEEEEEEc--CCEEEEEeCCC
Q 013881 261 N--CFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 261 ~--~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg 333 (434)
. .++++..++.|..-+..+.+++ ++|++++.|.+++||+.++. +.-..+++|+..+...+|+ +.||++++.|+
T Consensus 201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 2 3677888999999998888864 59999999999999999987 6777889999999999998 78999999999
Q ss_pred cEEEEEcCCCCceEEEeeecCC
Q 013881 334 TIKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~ 355 (434)
.+++||+..++.+.....|...
T Consensus 281 ~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ceeecccccCceeeecCCcccc
Confidence 9999999999888777776653
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1e-31 Score=234.38 Aligned_cols=237 Identities=20% Similarity=0.350 Sum_probs=206.3
Q ss_pred ccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
.-.|+.+|.++.|+.+. .++|+.+|+|++|+..- ..++.+++|. ..|++++|+|....++|+|.||+|+|||...
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 45799999999996654 77788999999999875 4566666665 9999999999999999999999999999876
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
.+... .+.+|.-.|.++.|+|. ++++|+.|..|++||.+++
T Consensus 212 ~kee~-------------------------------------vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 212 PKEER-------------------------------------VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred Cchhh-------------------------------------eeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 65432 36899999999999999 9999999999999999998
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCc
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKT 334 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~ 334 (434)
.++.++.+|...|..+.|+ +++|++++.|..++++|+++.+.++++++|+..|+++.|+ .++|.+|+.||.
T Consensus 255 ----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 255 ----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred ----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 8899999999999999996 5799999999999999999999999999999999999998 689999999999
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
|..|.+...+.+. .....+...|.++++.|-+. +|++|+.|.++++|.-.
T Consensus 331 vvh~~v~~~~p~~-~i~~AHd~~iwsl~~hPlGh---il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 331 VVHWVVGLEEPLG-EIPPAHDGEIWSLAYHPLGH---ILATGSNDRTVRFWTRN 380 (464)
T ss_pred eEEEecccccccc-CCCcccccceeeeeccccce---eEeecCCCcceeeeccC
Confidence 9999987443333 23334456799999988776 99999999999999754
No 47
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.9e-30 Score=244.65 Aligned_cols=271 Identities=26% Similarity=0.389 Sum_probs=236.2
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE-EecC-CceEEEEeC--CCEEEEEc-CCcEEEEECCCCceE
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV-INLG-GEVGCMISE--GPWIFIGV-TNFVKAWNTQTNTDL 223 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~-~~~~~~~~~--~~~l~~~~-~~~i~~w~~~~~~~~ 223 (434)
|...|.+..|. ..++++++.|.+|++||..++..+.. +..+ +.+.++... +.+++.+. |.++++||..++...
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56778888887 67899999999999999999998887 6654 456666554 77777765 999999999999987
Q ss_pred -EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCC
Q 013881 224 -SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 224 -~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 302 (434)
.+.+|...|.++...+..+++|+.|.+|++|++.++ ..+..+.+|..+|.++..+++++++|+.|++|++||+.+
T Consensus 285 ~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecCCCceEEEEEccCceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh
Confidence 788999999999999999999999999999999987 778888889999999999999999999999999999999
Q ss_pred CeEEEEEccccccEEEEEEcC-CEEEEEeCCCcEEEEEcCCC-CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 303 LQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
++++.++.+|...|.++.+.+ +.+++|+.|++|++||+++. +++..+..+..- +..+.+ ..++|++++.|+
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l~~-----~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSLLL-----RDNFLVSSSADG 433 (537)
T ss_pred ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccccc-----ccceeEeccccc
Confidence 999999999999999999998 99999999999999999998 676666665543 333321 223899999999
Q ss_pred eEEEEeCCCCcccccccc--cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 381 SVRFYDLPSFAERGKIFA--KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|++||..+++.+..+.. ...|.++++. +..+++++.||++++||+.+++++
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchh
Confidence 999999999999988876 3788888887 338999999999999999999865
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.9e-30 Score=215.71 Aligned_cols=245 Identities=21% Similarity=0.334 Sum_probs=209.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.++..+.+|++.|..+.|+|+|.+||||+.|..|.+|++.....
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce------------------------------------ 81 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE------------------------------------ 81 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc------------------------------------
Confidence 56677889999999999999999999999999999999654321
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSI 295 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i 295 (434)
....+.+|.+.|..+.|..+ .+++++.|.+|+.||++++ +.+..+++|..-|.++.+. ..++.+++.|+++
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 11246799999999999988 9999999999999999999 7889999999999999874 4578899999999
Q ss_pred EEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
++||+++...++++. .+..++++.|. ++.+.+|+-|+.|++||++....+..+.+|.. .|+.+..++++. ++
T Consensus 158 kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs---~l 231 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGS---FL 231 (338)
T ss_pred EEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCC---cc
Confidence 999999999888874 46778999998 78999999999999999999988888888775 488888777665 89
Q ss_pred EEEeCCCeEEEEeCCCCccccc----cc---c--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGK----IF---A--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~----~~---~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.+-+.|.++++||++.+..-.+ +. | +.....++|+|++ .+.+|+.|..+++||..+..
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 9999999999999987654443 22 1 3345678999999 99999999999999987643
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-30 Score=234.42 Aligned_cols=248 Identities=19% Similarity=0.316 Sum_probs=218.2
Q ss_pred EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 142 ~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
..+++..|...|.++.|+|....++++-..|.|.|||.++...++.++.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV------------------------------- 53 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV------------------------------- 53 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-------------------------------
Confidence 3455667999999999999999999999999999999999988877653
Q ss_pred eEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEE
Q 013881 222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRV 297 (434)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~v 297 (434)
..-+|.+..|-.. .+++|+.|..|++|++++. +.+..+..|..-|.+++.+|. +++++|.|-+|++
T Consensus 54 ------~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 54 ------SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred ------cccchhhheeeeccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence 2345566666544 9999999999999999998 789999999999999999975 7999999999999
Q ss_pred EeCCC-CeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 298 WNLET-LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 298 wd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
||.+. ..+.+++.+|+..|++++|+ .+.+++++.|++|+||.+.+......+..|. ..+.++.+.+.+ ++++|
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~g-dkpyl 200 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGG-DKPYL 200 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCC-CcceE
Confidence 99976 57889999999999999998 5699999999999999999888877777665 468889888754 45699
Q ss_pred EEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
++|+.|.+|+|||.++..++.++. |...|..+.|+|.- .+++|++||+++||+-.+=+++
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 999999999999999999999998 67889999999999 9999999999999998775543
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=241.46 Aligned_cols=249 Identities=27% Similarity=0.453 Sum_probs=208.7
Q ss_pred EEEecCc-cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 143 LTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 143 ~~~l~~h-~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
...+.+| ...|+++.|+++|++|++++.|+.+++|+....+. . .
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~----------------------------------~ 195 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N----------------------------------L 195 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-h----------------------------------h
Confidence 4555554 78999999999999999999999999999966552 0 0
Q ss_pred eEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEE
Q 013881 222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRV 297 (434)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v 297 (434)
...+.+|...|..++|+++ ++++++.|++|++||+.... ..+..+.+|...|++++|+ ++++++|+.|++|++
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~---~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG---RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRI 272 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence 1125789999999999999 99999999999999994432 6788899999999999996 569999999999999
Q ss_pred EeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc--eEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 298 WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN--LEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
||+++++++..+.+|...|++++|. +++|++++.|+.|+|||+.++.. ...+........+..+.|+|++. ++
T Consensus 273 Wd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~---~l 349 (456)
T KOG0266|consen 273 WDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK---YL 349 (456)
T ss_pred EeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc---EE
Confidence 9999999999999999999999998 78999999999999999998873 34444433322678888877665 99
Q ss_pred EEEeCCCeEEEEeCCCCcccccccc-cC---cEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIFA-KQ---EIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~---~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
++++.|+.+++||+..+.....+.. .. .+.+...++.+ .+++|+.|+.|++|++.++..
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 9999999999999998877776653 22 44555667888 999999999999999998764
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.3e-31 Score=223.66 Aligned_cols=273 Identities=18% Similarity=0.339 Sum_probs=231.2
Q ss_pred ccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEE--------ecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 109 KTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQ--------LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 109 ~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~--------l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
+..+-|..|+++. +++|+.||.|.+||..+| ++.+. |.-|..+|.|+.|+.|...||+|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4578899998874 777999999999999987 54433 335789999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 179 CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
+++|+|++.|. ..|...|+++.|+.+ .+++++.|.++++.-+
T Consensus 292 i~tG~ClRrFd------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 292 IETGQCLRRFD------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL 335 (508)
T ss_pred EecchHHHHhh------------------------------------hhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence 99999988753 478999999999998 9999999999999999
Q ss_pred CCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc--ccccEEEEEEc---CCEEEEE
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW---DQFLLSC 329 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~---~~~l~s~ 329 (434)
.++ +.+..+.+|++.|+...|. |.++++++.||+|++|+.++.+|+.+++. ...+|.++..- +..++++
T Consensus 336 KSG----K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 336 KSG----KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ccc----hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 998 8899999999999998884 77999999999999999999999999875 34566776665 6799999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeec-CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEe
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQL 407 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 407 (434)
....+|.|-++. ++.++.+.... +.....+.+.+|.++ ++.+.++|+.++.|.+.++++...+. |+..+..++-
T Consensus 412 Nrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe---wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 412 NRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE---WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred cCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc---EEEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 999999999885 44444444333 334455556665555 99999999999999999999887765 5778889999
Q ss_pred cCCc-EEEEeCCCCCEEEEE
Q 013881 408 GPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd 426 (434)
+|.. .|++-++||.+++|.
T Consensus 488 HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcccchhhhhcccchhhhcC
Confidence 9988 999999999999995
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.7e-29 Score=231.15 Aligned_cols=316 Identities=18% Similarity=0.344 Sum_probs=255.7
Q ss_pred ceEEEEEeCCc----EEEecCCCeEEEEeCCCCceE--------EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 111 DILCRNWVQGN----CMYGEKCKFLHSWTVGDGFKL--------LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 111 ~i~c~~~~~~~----~~~g~~d~~i~vwd~~~~~~~--------~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
.|..++|.++. .+.--.+.++..+.++..... -..+.||...|.++++|.+...++||+. +.++||+
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn 400 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWN 400 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEE
Confidence 56677773321 222356778888877642111 1356799999999999999888887765 5699999
Q ss_pred CCCCceEEEEecCCceE-EEEeCCCEEEEEc-CCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 013881 179 CASGQCAGVINLGGEVG-CMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~v 253 (434)
..+.++++++...-... ++.+.+.+++.|. .|.+.++|+.....+ ....|.+.|++++..|+ .+++|+.|.+|++
T Consensus 401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf 480 (888)
T KOG0306|consen 401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF 480 (888)
T ss_pred ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence 99999999999884433 3345677777766 789999999998877 67789999999999999 8999999999999
Q ss_pred EEcCCCCC--c-cccceee-----cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-
Q 013881 254 WKFNVTTN--C-FEPAASL-----KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 254 wd~~~~~~--~-~~~~~~~-----~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~- 322 (434)
||+..... . .+....+ -.-...|.|+.++ +.+|+++=.|.+|+||-+.+.+..-++.+|.-+|.|+..+
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 99754321 0 0011111 1234567888876 6689999999999999999999999999999999998877
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccC
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQ 400 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 400 (434)
++.+++|+.|++|+||-+.-+.+-+.++.|.. .+.++.|.|... ++.+++.|+.|+-||-..++.+..+. |..
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD--Svm~V~F~P~~~---~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD--SVMSVQFLPKTH---LFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccC--ceeEEEEcccce---eEEEecCcceEEeechhhhhhheeeccchh
Confidence 78999999999999999998888888888775 489999998554 89999999999999999999998886 588
Q ss_pred cEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 401 EIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 401 ~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+|++++.+|+| ++++++.|.+|++|.-....+
T Consensus 636 ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 636 EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred eeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 99999999999 999999999999999876543
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=238.31 Aligned_cols=281 Identities=14% Similarity=0.207 Sum_probs=206.2
Q ss_pred eEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC-----------CceEEEEeCC-----CE
Q 013881 141 KLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----------GEVGCMISEG-----PW 203 (434)
Q Consensus 141 ~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~-----~~ 203 (434)
...+.+. +|++.|.+|.||+||+|||+|+.|+.|+||.+...+....-... ..+..+.... ..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4455666 89999999999999999999999999999998774431111000 0000000000 00
Q ss_pred EEE--EcC-CcE----EEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccce
Q 013881 204 IFI--GVT-NFV----KAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (434)
Q Consensus 204 l~~--~~~-~~i----~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 275 (434)
... +.. ..+ +++-+.......+.+|.+.|..|.|+.+ +|++++.|.+|++|++... .++..+ .|..-
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----~CL~~F-~Hndf 411 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----ECLKVF-SHNDF 411 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----ceeeEE-ecCCe
Confidence 000 000 011 1111222223367899999999999998 9999999999999999876 555555 49999
Q ss_pred EEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 276 VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 276 v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
|+|++|+| ++|++|+.|+.||||++...+.+.-.. -...|++++|. |++.++|+.+|.+++|+....+......
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999974 699999999999999998877655443 44889999987 8899999999999999988765443333
Q ss_pred eecC------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCc-EEEEeCCCC
Q 013881 351 THNE------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 351 ~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg-~l~s~~~dg 420 (434)
.... ...|+.+.+.|..++ .+++.+.|..|+|||.++..++.++.+ ...-....|+.|| +|+++++|.
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 2221 236999999987665 466777999999999988888888774 2333456889999 999999999
Q ss_pred CEEEEEccC
Q 013881 421 QVRVWQWCN 429 (434)
Q Consensus 421 ~i~iwd~~~ 429 (434)
.|+||++..
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999854
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.5e-28 Score=219.89 Aligned_cols=244 Identities=31% Similarity=0.505 Sum_probs=207.1
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------- 46 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT----------------------------------- 46 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------
Confidence 356779999999999999999999999999999999987764432
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEE
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVW 298 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw 298 (434)
+..|...+..+.|.++ .+++++.+|.|++|++... +....+..|...+.++.+.+ .++++++.|+.|++|
T Consensus 47 --~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 47 --LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred --EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 4567778889999887 8999999999999999876 55667778888999999975 577777779999999
Q ss_pred eCCCCeEEEEEccccccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
|+++++.+..+..|...+.++.+++ .++++++.|+.|++||+++.+....+..+. ..+..+.+.++.. .++++
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~---~l~~~ 195 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGE---KLLSS 195 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc--cccceEEECCCcC---EEEEe
Confidence 9999999999999999999999984 677777779999999998777666655433 3578888877654 78888
Q ss_pred eCCCeEEEEeCCCCcccccc-cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 377 CNDNSVRFYDLPSFAERGKI-FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+.|+.|++||+.+++.+..+ .+...+.++.|+|++ ++++++.||.|++|++.+++.
T Consensus 196 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred cCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 88999999999998888887 567799999999999 888888899999999987654
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.1e-28 Score=199.65 Aligned_cols=246 Identities=25% Similarity=0.387 Sum_probs=203.9
Q ss_pred eEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
..++.+++|++.|..++|+|- |..|||++.|+.|++|+...+......
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck------------------------------- 53 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK------------------------------- 53 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE-------------------------------
Confidence 567889999999999999998 899999999999999998853321110
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcE
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI 295 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 295 (434)
.+.-.+|...|.+++|+|. +|++|+.|.++.||.-... .|+.+..+.+|...|.+++|+ |++|++++.|+.|
T Consensus 54 --~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~--efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 54 --TVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG--EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred --EeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC--ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 0112479999999999988 9999999999999976643 468899999999999999996 7899999999999
Q ss_pred EEEeCCC---CeEEEEEccccccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCC---ceEEEeeecCCccEEEEEeccCC
Q 013881 296 RVWNLET---LQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSG---NLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 296 ~vwd~~~---~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
-||.+.. .+++..++.|...|..+.|++ .+|++++.|.+|++|+-.... +...+..+. ..+.++.|.+.+
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~--~TVW~~~F~~~G 207 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE--NTVWSLAFDNIG 207 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc--ceEEEEEecCCC
Confidence 9999874 568899999999999999996 899999999999999876433 344444443 378889887766
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCC
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g 430 (434)
. .|++++.|++|+||-+.+. ....|..++..+.|. ++.|++++.|+.|++|.-..+
T Consensus 208 ~---rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 208 S---RLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred c---eEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCC
Confidence 4 7999999999999986621 222357889999999 779999999999999987754
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-28 Score=200.73 Aligned_cols=280 Identities=18% Similarity=0.223 Sum_probs=215.1
Q ss_pred cccccceEEEEEe--CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 106 AVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 106 ~~~~~~i~c~~~~--~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
..|+.|++.+.|. .+-+++.++|....||-..+| +.+-++.||+++|.++..+-+.++|+||+.|.++++||+++|+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 3488999999993 345777889999999999898 9999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEE-----eCCCcEEEEEc
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG-----TQDGAILAWKF 256 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g-----~~dg~i~vwd~ 256 (434)
++.+++.+.++ ..+.|+.+ +++.. +..+.|.++|+
T Consensus 86 ~la~~k~~~~V--------------------------------------k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 86 QLATWKTNSPV--------------------------------------KRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred EEEEeecCCee--------------------------------------EEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 99887765444 44444443 22222 22356788887
Q ss_pred CCCCC---ccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC-eEEEEEccccccEEEEEEc--CCEEEE
Q 013881 257 NVTTN---CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 257 ~~~~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (434)
+.... ..++...+..+...++...|+ ++.|++|..||.|.+||++++ +.+...+.|...|+.+.++ ..++++
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence 74321 125567777788889998887 679999999999999999997 5667778899999999998 569999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-CCC-eEEEEeCCCC------------cccc
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDN-SVRFYDLPSF------------AERG 394 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg-~i~iwd~~~~------------~~~~ 394 (434)
++.|.+-++||.++...++.+.. +.++.+.+++|..+ .++.|+ .+- .|.-=+.+.+ +++.
T Consensus 208 ~s~Dttakl~D~~tl~v~Kty~t---e~PvN~aaisP~~d---~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 208 GSKDTTAKLVDVRTLEVLKTYTT---ERPVNTAAISPLLD---HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred cccCccceeeeccceeeEEEeee---cccccceecccccc---eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 99999999999988766555444 34678888877655 444443 331 1222222222 3333
Q ss_pred ccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 395 KIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 395 ~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
.+. |-++|++++|+|+| ..++|++||.|++.-+...
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 333 57899999999999 9999999999999877653
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=207.87 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=198.7
Q ss_pred ccceEEEEEeC---CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCce
Q 013881 109 KTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 109 ~~~i~c~~~~~---~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
.+.+.-++|+. +.+++++.||++++||......+++.++.|+..|.++.|++ +.+.++++|.|++|++|+....+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 34677788854 46888999999999998866689999999999999999988 567788899999999999988776
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~ 261 (434)
+.+ +.+|...|+...|+|. ++++++.|+++++||++...
T Consensus 140 v~T-------------------------------------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g- 181 (311)
T KOG0277|consen 140 VQT-------------------------------------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG- 181 (311)
T ss_pred eEe-------------------------------------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-
Confidence 655 5689999999999987 99999999999999998873
Q ss_pred ccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc---CCEEEEEeCCCc
Q 013881 262 CFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKT 334 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~ 334 (434)
+ ...+..|...+.++.|+ .+.+++|+.|+.|++||+++ ..++.++.+|.-.|..+.++ ...|++++.|=+
T Consensus 182 --k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 182 --K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred --c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 3 33388899999999985 57899999999999999987 45688999999999999999 469999999999
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
++|||...+........++. .-+..+.|++..+ .++++.+.|..++||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~--~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHT-EFVCGLDWSLFDP--GQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccc-eEEeccccccccC--ceeeecccccceeeecc
Confidence 99999986554444444333 3577888887744 38999999999999984
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.6e-27 Score=243.32 Aligned_cols=276 Identities=15% Similarity=0.198 Sum_probs=217.1
Q ss_pred ccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCc-------eEEEEecCccccEEEEEccC-CCCEEEEEECCCcE
Q 013881 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETV 174 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~-------~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v 174 (434)
...|.+.|.+++|+++. +++|+.|+.|+||+..+.. .+...+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34478899999997643 7789999999999975310 1233344 346899999987 57899999999999
Q ss_pred EEEECCCCceEEEEecC-CceEEEEe---CCCEEEEE-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEe
Q 013881 175 RVWDCASGQCAGVINLG-GEVGCMIS---EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGT 246 (434)
Q Consensus 175 ~iwd~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~ 246 (434)
+|||+.+++.+..+..+ ..+.++.+ ++.+|+++ .|+.|++||+.++..+....+...|.++.|.+. .|++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 99999999988888654 45767654 34566654 589999999998877643334568999999643 999999
Q ss_pred CCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-CCEEEEecCCCcEEEEeCCC------CeEEEEEccccccEEEE
Q 013881 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSL 319 (434)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~------~~~~~~~~~~~~~v~~l 319 (434)
.||.|++||++... .+...+.+|...|.++.|. +.+|++++.|++|++||++. .+++..+.+|...+..+
T Consensus 638 ~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 638 ADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 99999999998753 3456778999999999985 67899999999999999974 36788899999999888
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe-----------eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 320 LCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY-----------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 320 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
.++ +.+|++|+.|+.|++|+......+..+. .......+.+++|.+++. +|++|+.||.|+||+
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~ 791 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS---TLVAANSTGNIKILE 791 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEe
Confidence 887 7899999999999999986554332211 112234588999987655 899999999999998
Q ss_pred C
Q 013881 387 L 387 (434)
Q Consensus 387 ~ 387 (434)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=202.61 Aligned_cols=257 Identities=14% Similarity=0.197 Sum_probs=208.1
Q ss_pred CCCeEEEEeCCCC--ceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCE
Q 013881 127 KCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203 (434)
Q Consensus 127 ~d~~i~vwd~~~~--~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (434)
.+|.+.|-++..+ ......+. -.+.+..++|++. .+.+++++.||+++|||+.....
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------- 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------- 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-------------------
Confidence 5688999998633 33334443 4688999999985 56789999999999999543211
Q ss_pred EEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 204 l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
....++.|...|.++.|++. .+++++.|++|++|+...+ ..+.++.+|...|....
T Consensus 96 -----------------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 96 -----------------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----NSVQTFNGHNSCIYQAA 154 (311)
T ss_pred -----------------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC----cceEeecCCccEEEEEe
Confidence 12247789999999999876 7888899999999999887 67888999999999999
Q ss_pred EC---CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC
Q 013881 281 VG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 281 ~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
|+ ++.+++++.|+++++||++..-....+..|...+.++.|+ .+.|++|+.|+.|+.||++..+...... ..+
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh 233 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGH 233 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCC
Confidence 97 5799999999999999998755555599999999999998 6799999999999999999876443222 344
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc-cccccc-ccCcEEEEEecCCc--EEEEeCCCCCEEEEEc
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA-ERGKIF-AKQEIRAIQLGPGG--LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~ 427 (434)
...|..+.++|...+ +|++++.|-+++|||..... .+.+.. |..-+..+.|++-. ++|+.+.|+.++||+-
T Consensus 234 ~~AVRkvk~Sph~~~--lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHAS--LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEEEEecCcchhh--HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 467999999987654 89999999999999998544 334444 45668899999854 9999999999999983
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-29 Score=236.54 Aligned_cols=244 Identities=20% Similarity=0.366 Sum_probs=208.7
Q ss_pred EEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
..|+..+..|..++|+|...+++++-..|.|++||.+-+.++..
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r------------------------------------ 46 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR------------------------------------ 46 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh------------------------------------
Confidence 34566678899999999999999999999999999998887765
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEe
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN 299 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd 299 (434)
+..|.++|..+.|+|. ++++|+.|-.|++|++.+. +++.++.+|-.-|..+.|+.. .++++|.|.+|+||+
T Consensus 47 -FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 47 -FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred -hhccCCccceeeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 6689999999999998 9999999999999999988 889999999999999999876 699999999999999
Q ss_pred CCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc---------------------------eEEEe
Q 013881 300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN---------------------------LEVTY 350 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~---------------------------~~~~~ 350 (434)
..+++++..+.+|...|+|..|. .+.++++|.|.+|||||+...+. +....
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 99999999999999999999999 57999999999999999853211 11111
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc---cccccccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE---RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
...+..++...+|+|.-+ +|++|+.|..|++|....-+. -.-..|.+.|.++-|+|.. ++++.++|++|+|||
T Consensus 202 LEGHDRGVNwaAfhpTlp---liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecCCcc---eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 122334577778877666 999999999999999875332 2223468899999999988 999999999999999
Q ss_pred ccCCc
Q 013881 427 WCNGP 431 (434)
Q Consensus 427 ~~~g~ 431 (434)
+....
T Consensus 279 m~kRt 283 (1202)
T KOG0292|consen 279 MTKRT 283 (1202)
T ss_pred ccccc
Confidence 98654
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=221.76 Aligned_cols=276 Identities=18% Similarity=0.263 Sum_probs=231.2
Q ss_pred ccccccceEEEEEeC--CcEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 105 RAVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
...|...+..+.|.. +.+++|+.|..|++|++..+ .+.+.+|.|..+.|+++.|.++++++++++.|+.+++|++..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 467888999999954 57899999999999999855 348888999999999999999999999999999999999998
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
.+...+ +.+|...|+++.|... .+++|+.|.+|+.||+...
T Consensus 251 ~r~~~T-------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 251 LRLRHT-------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred hhhhhh-------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 876654 6789999999999776 5999999999999999875
Q ss_pred CCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
.+..++. ....+..|..++..+++|-.|++|++||.++..+......+. .|+++..+ +..|++++.|.++.+
T Consensus 294 ----~C~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 294 ----YCSKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred ----heecccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence 3333322 233455566667789999999999999999999999998776 89888877 778999999999999
Q ss_pred EEcCCCCceEEEeee--cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCc-
Q 013881 338 WFATDSGNLEVTYTH--NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG- 411 (434)
Q Consensus 338 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg- 411 (434)
.|+++.+....+... ........+.|+|++. |+++|+.||.|+||++.++++...+.. ...|++++|+|.|
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~---YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS---YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCc---eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 999988766555432 2234467788887766 999999999999999999988777653 3369999999999
Q ss_pred EEEEeCCCCCEEEEE
Q 013881 412 LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 412 ~l~s~~~dg~i~iwd 426 (434)
.|++++.++.+.+|.
T Consensus 445 ~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 445 GLLSADKQKAVTLWT 459 (459)
T ss_pred hhhcccCCcceEecC
Confidence 999999999999993
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=214.03 Aligned_cols=251 Identities=19% Similarity=0.325 Sum_probs=215.6
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
+.+.-+.|..|+||+++|++|+.||-|.+||..+|+..+.++... .-.+..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------------------qd~fMM 261 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------------------QDNFMM 261 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------hcceee
Confidence 455678899999999999999999999999999998765443221 112445
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEEC--CCEEEEecCCCcEEEEeCCC
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 302 (434)
+...|.|+.|+.+ +|++|+.||.|++|.+.++ .+++.+. .|+..|+++.|+ +..+++++.|.++++.-+++
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecc----hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 7889999999998 9999999999999999998 6777776 899999999996 55899999999999999999
Q ss_pred CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
|++++.+.+|.+.|+...|. |..+++++.||+|++|+..+.+++..+.....+..+..+...|..+. .++++...+
T Consensus 338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsn 415 (508)
T KOG0275|consen 338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSN 415 (508)
T ss_pred chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCC
Confidence 99999999999999999987 88999999999999999999999999888888888999888877653 577788889
Q ss_pred eEEEEeCCCCcccccccc----cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcccC
Q 013881 381 SVRFYDLPSFAERGKIFA----KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVAT 434 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~~~~----~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~~ 434 (434)
+|+|.++. ++.+..+.. .+...+...||.| .+.+.++|+.++.|.+.+|++++
T Consensus 416 tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 416 TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 99999987 445544432 4556677899999 99999999999999999998763
No 63
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=3e-27 Score=223.36 Aligned_cols=315 Identities=16% Similarity=0.251 Sum_probs=254.1
Q ss_pred eEEEEEe---CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 112 ILCRNWV---QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 112 i~c~~~~---~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
|+.+.-. -+.++.|+..|.+.+|++.++ +.+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6666653 356888999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ecC-CceEEEEe--CCC-EEEEEc-CCcEEEEECCCCceE--EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 189 NLG-GEVGCMIS--EGP-WIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 189 ~~~-~~~~~~~~--~~~-~l~~~~-~~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
+.. +.+..+++ +|. +++++. .|.+.+||++..+.. ....|.+.|..+.|.+. .+++++.|+.+++|=.+++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 996 88988887 344 555555 488999999998876 44578899999999877 8999999999888865522
Q ss_pred CCccc-----------------------------------------------------------------------cc--
Q 013881 260 TNCFE-----------------------------------------------------------------------PA-- 266 (434)
Q Consensus 260 ~~~~~-----------------------------------------------------------------------~~-- 266 (434)
....+ ++
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 10000 00
Q ss_pred ------------------------------------eeec-----CccceEEEEEE--CCCEEEEecCCCcEEEEeCCCC
Q 013881 267 ------------------------------------ASLK-----GHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 267 ------------------------------------~~~~-----~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~ 303 (434)
..+. .....+++++. .|++.+.|+..|.|-+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0000 01133444444 4888999999999999999999
Q ss_pred eEEEEE---ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 304 QCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 304 ~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
-...++ ..|..+|+.++.+ ++.+++++.+|.+++||..+...+..+... ..+..+.++.... +++.+..
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~---~~~~~iv~hr~s~---l~a~~~d 554 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG---SSITGIVYHRVSD---LLAIALD 554 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---CCcceeeeeehhh---hhhhhcC
Confidence 888888 4899999999999 678999999999999999876533333222 2344444444444 7889999
Q ss_pred CCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 379 DNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 379 dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|-.|+++|..+.+.+..+. |.+.|++++||||| .|++++.|++|++||+.++.++
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 9999999999999998887 78999999999999 9999999999999999999875
No 64
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.8e-27 Score=226.27 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=187.8
Q ss_pred ecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCce-EEEEecCCceEEEEeCCC
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVGCMISEGP 202 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (434)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|+||+.|++|+|||+.++.. ...+.
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------- 115 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------------
Confidence 667889999998876 788999999999999999996 78999999999999999986532 11100
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
.....+.+|...|.+++|+|+ +|++++.|++|++||++.+ +....+. |...|.++
T Consensus 116 -----------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i~-~~~~V~Sl 173 (568)
T PTZ00420 116 -----------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQIN-MPKKLSSL 173 (568)
T ss_pred -----------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEEe-cCCcEEEE
Confidence 011236789999999999997 5679999999999999987 3334443 55779999
Q ss_pred EEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEE-------cCCEEEEEeCCC----cEEEEEcCCCCce
Q 013881 280 VVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-------WDQFLLSCSLDK----TIKVWFATDSGNL 346 (434)
Q Consensus 280 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~-------~~~~l~s~s~dg----~i~vwd~~~~~~~ 346 (434)
+|+ +.+|++++.|+.|+|||+++++.+.++.+|.+.+.+..+ ++++|++++.|+ +|+|||++.....
T Consensus 174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 986 678999999999999999999999999999876543322 256889888774 7999999965443
Q ss_pred EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc--cccccccCcEEEEEecCCc
Q 013881 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE--RGKIFAKQEIRAIQLGPGG 411 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~spdg 411 (434)
.....+...... +....+.+.+.++++|+.|+.|++|++..+.. +..+.+..++..++|.|+.
T Consensus 254 l~~~~ld~~~~~--L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 254 LVTMSIDNASAP--LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEecCCccc--eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 333333332222 22222344555889999999999999977532 2233356778899999974
No 65
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.9e-27 Score=225.83 Aligned_cols=258 Identities=14% Similarity=0.201 Sum_probs=189.4
Q ss_pred EeCCcEEEecCCCeEEEEeCCCCceE------------EEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCc
Q 013881 117 WVQGNCMYGEKCKFLHSWTVGDGFKL------------LTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 117 ~~~~~~~~g~~d~~i~vwd~~~~~~~------------~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
|....++.++.+.....|+...+... ...+.+|.+.|++++|+| ++++|++++.|++|++||+.++.
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 33345555555555666665443111 124779999999999999 88999999999999999998653
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~ 260 (434)
..... ......+.+|...|.+++|+|+ +|++++.|+.|++||+.++
T Consensus 110 ~~~~~------------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg- 158 (493)
T PTZ00421 110 LTQNI------------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG- 158 (493)
T ss_pred ccccc------------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-
Confidence 21100 0112347789999999999985 8999999999999999987
Q ss_pred CccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccE-EEEEEc--CCEEEEEe----C
Q 013881 261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCW--DQFLLSCS----L 331 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~s----~ 331 (434)
+....+.+|...|.+++|+ +++|++++.|++|++||+++++.+..+..|...+ ..+.|. ++.+++++ .
T Consensus 159 ---~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 159 ---KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred ---eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 5677788999999999996 6689999999999999999999999999987654 345555 45666654 4
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCCccccccc--ccCcEEEEEec
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSFAERGKIF--AKQEIRAIQLG 408 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s 408 (434)
|+.|++||+++...............+....+.++.. +|++++ .|+.|++||+.+++...... ...++..++|.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~---~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~ 312 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN---LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMM 312 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC---EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEec
Confidence 7999999998765444333333333344444544433 677766 59999999999887665433 35567888888
Q ss_pred CCc
Q 013881 409 PGG 411 (434)
Q Consensus 409 pdg 411 (434)
|..
T Consensus 313 pk~ 315 (493)
T PTZ00421 313 PKW 315 (493)
T ss_pred ccc
Confidence 863
No 66
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.7e-28 Score=213.74 Aligned_cols=279 Identities=17% Similarity=0.302 Sum_probs=226.4
Q ss_pred cccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceE---EEE-------------e-cCccccEEEEEccCCC
Q 013881 102 INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKL---LTQ-------------L-EGHQKVVSGITLPSGS 162 (434)
Q Consensus 102 ~~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~---~~~-------------l-~~h~~~V~~l~~s~~~ 162 (434)
+.....|.-++.|++.+++ ..+.++.+++|.-|++.++... +.. - ++|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3446788889999999777 6888999999999999987422 111 1 2788999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-- 240 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-- 240 (434)
+|||+|+.|..|.||+.++.+.++. +.+|.+.|.+++|-..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~-------------------------------------~~ghr~~V~~L~fr~gt~ 257 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKV-------------------------------------FKGHRGAVSSLAFRKGTS 257 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhc-------------------------------------ccccccceeeeeeecCcc
Confidence 9999999999999999999887654 5789999999999765
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-CE-EEEecCCCcEEEEeCCCCeEEEEEccccccEEE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS 318 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 318 (434)
.|++++.|.+|++|+++.. ..+.++.+|...|..|.... .. +-+|+.|+++++|++.. +....+.+|.+.+-|
T Consensus 258 ~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidc 332 (479)
T KOG0299|consen 258 ELYSASADRSVKVWSIDQL----SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDC 332 (479)
T ss_pred ceeeeecCCceEEEehhHh----HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeee
Confidence 9999999999999999887 77889999999999998753 34 45566999999999944 445567788999999
Q ss_pred EEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC----------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 319 LLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE----------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 319 l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
++|- ...|++|+.+|.|.+|++...+.+......+. ..++.+++..+..+ ++++|+.+|.|++|.+
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKI 409 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEe
Confidence 9987 78999999999999999988776655443221 12788898888777 9999999999999999
Q ss_pred CCC----cccccccccCcEEEEEecCCc-EEEEe-CCCCCEEEE
Q 013881 388 PSF----AERGKIFAKQEIRAIQLGPGG-LFFTG-DGTGQVRVW 425 (434)
Q Consensus 388 ~~~----~~~~~~~~~~~v~~~~~spdg-~l~s~-~~dg~i~iw 425 (434)
..+ .++..+...+-|++++|+++| .+++| +..-.+-=|
T Consensus 410 ~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 410 EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cCCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 876 445555568889999999999 56665 344334333
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=204.91 Aligned_cols=311 Identities=18% Similarity=0.214 Sum_probs=235.5
Q ss_pred ccccccccceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.....|++.|..++-.. ..+-+++.|.+-+||.++++ +++.++.||.+.|++|+|++.+.++++++.|++..||...
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 44567888998887733 35777889999999999999 9999999999999999999999999999999999999732
Q ss_pred CC----ceE--EEEecCCceEEEEeCCCEEEE--EcCC-cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCC
Q 013881 181 SG----QCA--GVINLGGEVGCMISEGPWIFI--GVTN-FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249 (434)
Q Consensus 181 ~~----~~~--~~~~~~~~~~~~~~~~~~l~~--~~~~-~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg 249 (434)
-. +.. ......++..+-.......-. ..|+ .|++ ....+.+|.+.|.+..|-.. .+++++.|.
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 11 100 000011111111000000000 0111 2221 12367889999999998554 999999999
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc-CCE
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW-DQF 325 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~-~~~ 325 (434)
+..+||++++ +++..+.+|....+.++-.+ .++++.+.|.+.++||++. -..+..|++|+..|+++.|. ++.
T Consensus 295 TAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 295 TANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred cceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence 9999999998 88999999999998888765 4688999999999999985 35578899999999999999 899
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc------ccc
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI------FAK 399 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~ 399 (434)
+++|+.|.+|+|||+++............ .+..++.+. +.++|+.--.+..|++||+..... ..+ .|.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~---g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHr 444 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSK---GHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHR 444 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCC--ccceeEeec---CCceEEeccCCceEEEEecCCCcc-ccCCcccccccc
Confidence 99999999999999998876554444443 344454433 344888888899999999985433 333 256
Q ss_pred CcEEEEEecCCc---EEEEeCCCCCEEEEEccCC
Q 013881 400 QEIRAIQLGPGG---LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 400 ~~v~~~~~spdg---~l~s~~~dg~i~iwd~~~g 430 (434)
..|++++|..+- -|++++.|..+.=|++..-
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 679999998776 7999999999999998754
No 68
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8.1e-28 Score=223.01 Aligned_cols=275 Identities=25% Similarity=0.409 Sum_probs=225.5
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEE------E--eCCCEEEEEcCCc
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM------I--SEGPWIFIGVTNF 211 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~------~--~~~~~l~~~~~~~ 211 (434)
+++.+.+.||...|..+++.+ +..++++|.||++++|+-..++.+......++..++ . ..+++++.+.|..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 578889999999999998764 447999999999999998877766543333222222 1 1344666677999
Q ss_pred EEEEECCCCceE-EecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-CCEEEE
Q 013881 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYS 288 (434)
Q Consensus 212 i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s 288 (434)
+.+|.......+ .+.+|...|.++....+ .+++|+.|.++++|... +....+.+|+..|.++..- .+.+++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch------hhhcccCCcchheeeeeecCCCcEEe
Confidence 999999988876 89999999999998777 88999999999999875 4456699999999998774 458999
Q ss_pred ecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 289 ~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
|+.|.+|++|.- ++++++|.+|...|..+++-+ ..|++++.||.|++|++ +++.+.....|.. .+.++....+.
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~~~~ 231 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMALSD 231 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEecCCC
Confidence 999999999986 788999999999999999984 59999999999999999 6667766666654 46666643333
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccccccccC-cEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQ-EIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
. .++++++|++++||+.. +..+.+.+.. .|+++.+-++|-+++|+.||.||||......
T Consensus 232 ~---~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 232 G---LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred C---eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccc
Confidence 3 89999999999999987 6667777754 8999999999999999999999999887543
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.3e-29 Score=224.28 Aligned_cols=247 Identities=19% Similarity=0.329 Sum_probs=204.3
Q ss_pred eEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCC-CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt------------------------------- 253 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT------------------------------- 253 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------------------
Confidence 67889999999999999999 899999999999999999876 566654
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--C-CEEEEecCCC
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A-NKLYSGSMDN 293 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~s~s~dg 293 (434)
+.+|...|.+++|+++ .+++++.|+.|++||.+++ +....+.. ...+.++.+. + +.|++|+.|+
T Consensus 254 ------f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG----~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 254 ------FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG----QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred ------hhcchhhhhhhhccccCCeeeeeecceeeeeeccccc----eEEEEEec-CCCceeeecCCCCCcEEEEecCCC
Confidence 6789999999999998 9999999999999999998 45555432 2345666664 3 6899999999
Q ss_pred cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
.|+.||+++++.++++..|-+.|..+.|- +.++++.+.|++++||+.+.+..+....... .....++...|..+
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~--- 398 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGK--- 398 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCC---
Confidence 99999999999999999999999999997 7899999999999999998776655444332 24566677666555
Q ss_pred EEEEEeCCCeEEEEeCCCCccc---cccc-c--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 372 VLLCSCNDNSVRFYDLPSFAER---GKIF-A--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~---~~~~-~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
++++-+.|+.|.+|.+...-.. ..+. | .+.-..+.||||| +|++|+.||.+.+||+.+-+++
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 9999999999999997543222 1222 2 5567789999999 9999999999999999987654
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-27 Score=206.74 Aligned_cols=267 Identities=25% Similarity=0.369 Sum_probs=211.4
Q ss_pred eCCcEEEecCCCeEEEEeCCCC-------------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDG-------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~-------------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
..+.++-.+.+.+|.-..+.+. -+++..+ -|.+.|.++... +++|+||+.||++++||.. |+.
T Consensus 61 i~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~ 136 (423)
T KOG0313|consen 61 IKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKS 136 (423)
T ss_pred EcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecC-Cce
Confidence 5566665555554444433322 1233333 388999999887 7899999999999999975 444
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC-C----EEEEEeCCCcEEEEEcCCC
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D----LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~-~----~l~~g~~dg~i~vwd~~~~ 259 (434)
+. .+.+|.++|.+++|.. + .|++++.|.++++|.++.+
T Consensus 137 ~~-------------------------------------~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 137 IK-------------------------------------TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred EE-------------------------------------EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 43 3678999999887743 2 6999999999999999988
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCC-------------------------CCeEEEEEccc
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE-------------------------TLQCIQTLTEH 312 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~-------------------------~~~~~~~~~~~ 312 (434)
....+.+....+|...|.+++.+ +.++++|+.|.+|.+|+.. ++.++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 76666666677999999999974 6799999999999999932 12456778899
Q ss_pred cccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 313 TSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 313 ~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
..+|.++.|. ...+++++.|.+|+.||+.+++....+... ....++...+... +|++|+.|..|++||.+++.
T Consensus 260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~---Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSK---LLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccc---eeeecCCCCceeecCCCCCC
Confidence 9999999999 679999999999999999998877666554 3577888877555 99999999999999998764
Q ss_pred cc----ccccccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCc
Q 013881 392 ER----GKIFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 392 ~~----~~~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~ 431 (434)
-. ..+.|.+.|.++.|+|.. +|++++.|+++++||+++.+
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 22 223478899999999988 99999999999999998754
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=195.17 Aligned_cols=276 Identities=15% Similarity=0.201 Sum_probs=225.4
Q ss_pred EEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC---ceEEEE--e--CCCEEEEEcCCcEEEEE
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---EVGCMI--S--EGPWIFIGVTNFVKAWN 216 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~--~--~~~~l~~~~~~~i~~w~ 216 (434)
+.+++|.+.|.+|+|+.+|..|++|+.|+++++|+++..+........+ .+..+. + ++.+++++.+..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678899999999999999999999999999999999886555444322 233332 2 44455567788999999
Q ss_pred CCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCC
Q 013881 217 TQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (434)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 292 (434)
++.++..........-.-+.|+|+ +++++..|..|.+.|.++.. .... ......+..+.|+ +++++.....
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~----~~~~-~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYK----IVNE-EQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccc----eeeh-hcccceeeeeeecCCCCEEEEecCC
Confidence 999998855555555556788887 99999999999999998752 2222 2234456666664 6677777778
Q ss_pred CcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
|+|.|......++++.+++|.....|+.|+ |++|++|+.|-.+.+||+.+.-+.+.+..+.- +|..+.|+.++.
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~-- 244 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGR-- 244 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccCcc--
Confidence 999999999999999999999999999998 88999999999999999998888888777665 488888876655
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCC---------CCEEEEEccC
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGT---------GQVRVWQWCN 429 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~d---------g~i~iwd~~~ 429 (434)
+|+++++|..|-|=++++|..+.++.+.++...++|+|.. +||-+++| |.|++|-+.+
T Consensus 245 -~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 245 -MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred -eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999999999999999999999999999999999 88777654 6788876654
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=202.22 Aligned_cols=289 Identities=18% Similarity=0.243 Sum_probs=226.4
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCC-----------------CceEEEEecCccccEEEEEccCCCC
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD-----------------GFKLLTQLEGHQKVVSGITLPSGSD 163 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~-----------------~~~~~~~l~~h~~~V~~l~~s~~~~ 163 (434)
.....|+.++.|.+|++++ +.+|+.|..|+|.|++. +...+++|-.|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 3467999999999998775 55688999999999871 1246888889999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--E
Q 013881 164 KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L 241 (434)
Q Consensus 164 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~ 241 (434)
.|++++.|++|+++|+..-...+.++ ......+|.++.|+|. +
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K-----------------------------------~~qd~~~vrsiSfHPsGef 230 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFK-----------------------------------VFQDTEPVRSISFHPSGEF 230 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHH-----------------------------------HhhccceeeeEeecCCCce
Confidence 99999999999999987653332221 2334567899999987 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc-cc-ccEE
Q 013881 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE-HT-SVVM 317 (434)
Q Consensus 242 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~-~~v~ 317 (434)
|++|.....+++||+++-+ ++.....-.+|+..|+++.++ +++.++++.||.|++||--+++|+.++.. |. ..|.
T Consensus 231 llvgTdHp~~rlYdv~T~Q-cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQ-CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred EEEecCCCceeEEecccee-EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee
Confidence 9999999999999999852 233333456799999999997 56899999999999999999999998864 54 4677
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc-cEEEEEeccCCCCCcEEEEE-eCCCeEEEEeCCCCccc
Q 013881 318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSFAER 393 (434)
Q Consensus 318 ~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 393 (434)
+..|. ++++++.+.|..+++|.+.+++.+....+..... ....-...++.... +++.- -..+.+.-||.++...+
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-eEEccccccCceeeccccchhhh
Confidence 77776 8899999999999999999998887776542211 11111112223233 44443 34678999999997765
Q ss_pred cc--ccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 394 GK--IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 394 ~~--~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.. +.|.+.++.+.-||.+ .+++++.|-.+++|--.
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 54 4578999999999999 99999999999999644
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-26 Score=192.32 Aligned_cols=283 Identities=14% Similarity=0.214 Sum_probs=228.6
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC---ceEEEEe-CCCEEEEEc--CCcEE
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---EVGCMIS-EGPWIFIGV--TNFVK 213 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~--~~~i~ 213 (434)
+++.+.+..-...|++|.|+++|.+|++++.|.+++|||..+++.++++.... ...++.. ....+.++. |..|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 35566677778899999999999999999999999999999999999988763 3344443 444555554 77999
Q ss_pred EEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEec
Q 013881 214 AWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS 290 (434)
Q Consensus 214 ~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 290 (434)
..++.+++.+ .+.+|...|.+|+.+|- .+++++.|++|++||++.. ++...+.....++.++.+.|-.+|++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~----~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK----KCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC----CCceEEecCCCcceeECCCCcEEEEec
Confidence 9999999987 68899999999999987 9999999999999999976 556666666677777777788899988
Q ss_pred CCCcEEEEeCCCC--eEEEEEcc---ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCcc-EEEEE
Q 013881 291 MDNSIRVWNLETL--QCIQTLTE---HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG-VLALC 362 (434)
Q Consensus 291 ~dg~i~vwd~~~~--~~~~~~~~---~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 362 (434)
....|++||++.. .+..++.- .....+.+.|+ |++|+.++..+.+++.|.-++..+..+..+..... -...+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 8889999999874 34444443 36677888888 88999999999999999999987777766655432 24556
Q ss_pred eccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
+.|++. ++++|+.||+|.+|+++++..+..+.. ..++.++.|+|.- +++++ +..+.+|=....+
T Consensus 240 ftPds~---Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 240 FTPDSK---FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred ECCCCc---EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 666665 999999999999999999999988775 6789999999997 66666 4568888666544
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=210.44 Aligned_cols=279 Identities=14% Similarity=0.231 Sum_probs=225.2
Q ss_pred ccccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 103 NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
.....|.+.|.|++=.+. .+++|+.||.|++||+.+. +++..++.|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 335789999999998665 4788999999999999997 89999999999999999986 77999999999999998
Q ss_pred CCCceEEEEecCCceEEEEe-CCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 180 ASGQCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
+. ..++++.....+..+.. ...-+++.....|.+||.+....+ .+.--...|.++.|+|. +|+++..|+.|.+|
T Consensus 137 ~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 137 DG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 76 46677766666555543 334455566668999999776655 66667788999999997 88899999999999
Q ss_pred EcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc--CCEEEEE
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (434)
|+++.....+.+.. ..-..|+|+++ .|++|++|..++.||++. ..++....+|.+.|+++.|+ |+-+++|
T Consensus 216 D~R~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 216 DLRQASPLKKVILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ecccCCccceeeee-----ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 99998543333322 23456788765 589999999999999987 45678888999999999999 8999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG 394 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 394 (434)
|.|.+|+||..+.+......... ....+.++.|+.++. ++++|+.|+.|++|.....+.+.
T Consensus 291 syDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dsk---yi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSK---YIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccceEEEeecCCCcchhhhhHh-hhheeeEEEEecccc---EEEecCCCcceeeeecchhhhcC
Confidence 99999999999877654444333 335699999988776 99999999999999886554443
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.7e-27 Score=217.37 Aligned_cols=313 Identities=16% Similarity=0.224 Sum_probs=243.5
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEec--------------------Ccc----ccEEEEEccCCCCEEE
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE--------------------GHQ----KVVSGITLPSGSDKLY 166 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~--------------------~h~----~~V~~l~~s~~~~~l~ 166 (434)
-..|++.+...++.|..+|.|++|+.++- ..+.+|. +-. -...++.|++....|.
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL-~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETL-DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchh-hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 45688888889999999999999998753 2222221 111 1234678899999999
Q ss_pred EEECCCcEEEEECCCCceEE----EEecC--------------CceEEEEeCCCEEEEEcCCcEEEEECCCCc---e---
Q 013881 167 SGSKDETVRVWDCASGQCAG----VINLG--------------GEVGCMISEGPWIFIGVTNFVKAWNTQTNT---D--- 222 (434)
Q Consensus 167 s~s~dg~v~iwd~~~~~~~~----~~~~~--------------~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~---~--- 222 (434)
....|..++|||+++-+.+. .+.+. .+.....+.+.++.++.|++|++|+++... .
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999999998754332 22221 222233346778888999999999997632 0
Q ss_pred --------------------------------EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 223 --------------------------------LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 223 --------------------------------~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
.........+.+++.+|+ +|++|..-|.|+||++... +....
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~ 496 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----EYTCF 496 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh----hhhhh
Confidence 011223456889999999 9999999999999999876 67778
Q ss_pred ecCccceEEEEEECC-----CEEEEecCCCcEEEEeCC-CCeEEEEEccccccEEEEEEc--------------------
Q 013881 269 LKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW-------------------- 322 (434)
Q Consensus 269 ~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~~-------------------- 322 (434)
+..|...|.|+.++. ++|++++.|..|+|||+. +..+++++.+|...|+++.|-
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr 576 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR 576 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee
Confidence 899999999999972 479999999999999985 456677777887777776653
Q ss_pred -------------------------------CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC-ccEEEEEeccCCCCC
Q 013881 323 -------------------------------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGK 370 (434)
Q Consensus 323 -------------------------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 370 (434)
.+++++++.|..|+|||+.+++..+.+.....+ .....+...|.+
T Consensus 577 ~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg--- 653 (1080)
T KOG1408|consen 577 VNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG--- 653 (1080)
T ss_pred hhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc---
Confidence 146889999999999999999888888765544 556666665544
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.||++++.|.++.++|..+++.+.+.. |...|+.+.|.+|- .|++.+.||.|.||.+...-
T Consensus 654 iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 499999999999999999999999876 56779999999999 99999999999999987543
No 76
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.6e-26 Score=193.38 Aligned_cols=275 Identities=14% Similarity=0.158 Sum_probs=219.5
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeC-C-CEEEEEcCCcEEEEECCCCceEEec
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE-G-PWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
.++.|++|.|+|.+..|+.+++||++++||+........++...++.+..+. . ..++.+.|+.|+.+|+.++....+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 4688999999999999999999999999999999999999999998877663 3 4455566999999999999999999
Q ss_pred CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCe
Q 013881 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 304 (434)
.|...|.++.+.+. .+++|+.|++|++||.+.. .....+. ....|.++...++.|+.|+.|..|.+||+++..
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc----ccccccc-cCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 99999999999955 9999999999999999864 2333333 334899999999999999999999999999866
Q ss_pred EEEEEc--cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC----CceEEEeeecC-------CccEEEEEeccCCCC
Q 013881 305 CIQTLT--EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS----GNLEVTYTHNE-------EHGVLALCGMPDSEG 369 (434)
Q Consensus 305 ~~~~~~--~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 369 (434)
...... .-+-.+.++++. +.-+++++-||.|.+=.+... .....+.-|.. -.+|.+++|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~- 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG- 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-
Confidence 543222 234556777776 467888999999998766655 22223333322 24688889988755
Q ss_pred CcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCC-----CCC-------EEEEEccCCc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDG-----TGQ-------VRVWQWCNGP 431 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~-----dg~-------i~iwd~~~g~ 431 (434)
.|++|+.||.|.+||+.+.+.+..+.. +..|.+++|+.|| .||+++. ... |.|.++.+-+
T Consensus 246 --tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 246 --TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred --eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence 899999999999999999888888766 5779999999999 9988863 223 6777666543
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.7e-27 Score=208.56 Aligned_cols=274 Identities=19% Similarity=0.263 Sum_probs=224.4
Q ss_pred cccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 108 ~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
..++|..++|++. .-++.+..-.+.+|+..+. ...+++.-.++.|.++.|-.||++|+.|+..|.|+|+|+.+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3458999999763 2333344467889998876 677777778899999999999999999999999999996653333
Q ss_pred EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc
Q 013881 186 GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
+ .+..|+.++..+.|++. .+++|+.|+.+++||+.+.
T Consensus 104 R-------------------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--- 143 (487)
T KOG0310|consen 104 R-------------------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--- 143 (487)
T ss_pred H-------------------------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---
Confidence 2 36789999999999987 8999999999999999987
Q ss_pred cccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCC-eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEE
Q 013881 263 FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (434)
.....+.+|+..|.+.++.+ ..+++|+.||+|++||++.. ..+.++ .|..+|-.+.+- +..+++++ ...|+
T Consensus 144 -~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 144 -YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred -EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 34668999999999999974 38999999999999999987 556666 689999888887 45666665 57899
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s 415 (434)
|||+.++.++...... +...++++.+..++ ..|++++-|+.|++||+.+.+.+..+.-.++|.+++.+|++ .++.
T Consensus 221 VWDl~~G~qll~~~~~-H~KtVTcL~l~s~~---~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFN-HNKTVTCLRLASDS---TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEecCCceehhhhhc-ccceEEEEEeecCC---ceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEE
Confidence 9999877665544442 33568888887654 38999999999999999999999999999999999999999 9999
Q ss_pred eCCCCCEEEEEccC
Q 013881 416 GDGTGQVRVWQWCN 429 (434)
Q Consensus 416 ~~~dg~i~iwd~~~ 429 (434)
|-.||.+.+=+...
T Consensus 297 GmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 297 GMSNGLVSIRRREV 310 (487)
T ss_pred ecccceeeeehhhc
Confidence 99999887765443
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-25 Score=178.87 Aligned_cols=277 Identities=19% Similarity=0.268 Sum_probs=219.6
Q ss_pred cceEEEEEeCC-c-EEEecCCCeEEEEeCCC------C--------ceEEEEecCccccEEEEEccCCCCEEEEEECCCc
Q 013881 110 TDILCRNWVQG-N-CMYGEKCKFLHSWTVGD------G--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173 (434)
Q Consensus 110 ~~i~c~~~~~~-~-~~~g~~d~~i~vwd~~~------~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~ 173 (434)
-.|..++|.+. . ...|+..++++|--... + .-+.+.-+.|++.|.|.+|+|+|++|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 37888999554 3 44477888888754321 1 1123344578999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC------EEEEE-e
Q 013881 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND------LLFAG-T 246 (434)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~------~l~~g-~ 246 (434)
|++.-.....+-. ++..+.+..|.+.|..++|-.+ +|+++ .
T Consensus 113 ik~l~fn~dt~~~--------------------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 113 IKVLPFNADTCNA--------------------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EEEEecccccccc--------------------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 9998776544321 2344567889999999999655 55554 4
Q ss_pred CCCcEEEEEcCCCCCccccceeecCccceEEEE-EECCCEEEEecCCCcEEEEeCCCCeEEEEEcc--c-----cccEEE
Q 013881 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL-VVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--H-----TSVVMS 318 (434)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~-----~~~v~~ 318 (434)
.|..|++-|-..+ +....+.+|++.|.++ .|++-++++|+.|.+|++||++-..++.++.. | .+.|.+
T Consensus 161 gdc~iy~tdc~~g----~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 161 GDCKIYITDCGRG----QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CcceEEEeecCCC----CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 5777888887777 6788899999999887 57899999999999999999999999888753 2 356777
Q ss_pred EEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc--
Q 013881 319 LLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG-- 394 (434)
Q Consensus 319 l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 394 (434)
++.+ +++|++|-.|....+||++.++.++.+..|..+ +.++.|+|... ++++++.|..|++-|+.. .+..
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad--ir~vrfsp~a~---yllt~syd~~ikltdlqg-dla~el 310 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD--IRCVRFSPGAH---YLLTCSYDMKIKLTDLQG-DLAHEL 310 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc--eeEEEeCCCce---EEEEecccceEEEeeccc-chhhcC
Confidence 7777 889999999999999999999988888877654 88888877655 999999999999999974 2222
Q ss_pred ----cccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 395 ----KIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 395 ----~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.-+|++.+..+.|+|.. .+++.+.|.++.+|-+.
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 22468889999999999 99999999999999764
No 79
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.2e-26 Score=216.44 Aligned_cols=253 Identities=18% Similarity=0.242 Sum_probs=192.4
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc----eEE
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT----DLS 224 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~----~~~ 224 (434)
|-..|.....++++..+++++.+..+..|+...+..+. +..+.++ ...
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~----------------------------~~~~~G~~~~~~~~ 70 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL----------------------------KHTDYGKLASNPPI 70 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEe----------------------------eccccccCCCCCce
Confidence 44556666777888888999999999999876653221 1111121 124
Q ss_pred ecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEcCCCCC---ccccceeecCccceEEEEEECC---CEEEEecCCCcE
Q 013881 225 LSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSI 295 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i 295 (434)
+.+|.+.|.+++|+| + +|++|+.|++|++||+..... ...++..+.+|...|.++.|++ ++|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 678999999999998 4 899999999999999976421 1235677889999999999974 489999999999
Q ss_pred EEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
+|||+++++.+..+..|...|.+++|+ +.+|++++.|+.|+|||++++..+..+..+... ....+.|.+... .+
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-~~~~~~w~~~~~---~i 226 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-KSQRCLWAKRKD---LI 226 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-cceEEEEcCCCC---eE
Confidence 999999999999999999999999998 779999999999999999988776666555432 233445554432 45
Q ss_pred EEEe----CCCeEEEEeCCCCcccccc-c--ccCcEEEEEecCCc-EEEEeC-CCCCEEEEEccCCccc
Q 013881 374 LCSC----NDNSVRFYDLPSFAERGKI-F--AKQEIRAIQLGPGG-LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 374 ~~~~----~dg~i~iwd~~~~~~~~~~-~--~~~~v~~~~~spdg-~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
++++ .|+.|++||+++....... . ....+....|++++ +|++++ .|+.|++||+.+++++
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 5433 4899999999876533222 2 23456667899999 777776 6999999999988753
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=219.19 Aligned_cols=268 Identities=25% Similarity=0.366 Sum_probs=222.8
Q ss_pred CCc-EEEecCCCeEEEEeCCCCce-----EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc--eEEEEec
Q 013881 119 QGN-CMYGEKCKFLHSWTVGDGFK-----LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINL 190 (434)
Q Consensus 119 ~~~-~~~g~~d~~i~vwd~~~~~~-----~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~ 190 (434)
.+. +++|+.||.|++|++..... .+..++.|.+.|.+++..-+++.|+++|.|-+|++|+...+. ++.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s---- 111 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS---- 111 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh----
Confidence 344 89999999999999874322 478899999999999999999999999999999999988763 222
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE-eCC--EEEEEeCCCcEEEEEcCCCCC------
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GND--LLFAGTQDGAILAWKFNVTTN------ 261 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~-~~~--~l~~g~~dg~i~vwd~~~~~~------ 261 (434)
++..|...|.|+++ .++ ++++|+.|+.|.+||++++..
T Consensus 112 ---------------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~ 158 (735)
T KOG0308|consen 112 ---------------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF 158 (735)
T ss_pred ---------------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc
Confidence 36789999999999 444 999999999999999997632
Q ss_pred ccccceeec-CccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEE
Q 013881 262 CFEPAASLK-GHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (434)
Q Consensus 262 ~~~~~~~~~-~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (434)
.......+. ++...|.+++.++. .|++|+..+.|++||.++.+.+..+.+|+..|.++..+ |..+++++.||+|+
T Consensus 159 n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 159 NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 012223333 88899999999865 89999999999999999999999999999999999988 78999999999999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-cccCcEEEEEecCCc-EEE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-FAKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~spdg-~l~ 414 (434)
+||+...+++..+..|... ++++...++-. .+++|+.||.|..=|+.+......+ ....+|..+..+... -+-
T Consensus 239 lWdLgqQrCl~T~~vH~e~--VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W 313 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHKEG--VWALQSSPSFT---HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW 313 (735)
T ss_pred eeeccccceeeeEEeccCc--eEEEeeCCCcc---eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce
Confidence 9999999999998887765 88887765544 8999999999999999986444433 346778888877655 557
Q ss_pred EeCCCCCEEEEEcc
Q 013881 415 TGDGTGQVRVWQWC 428 (434)
Q Consensus 415 s~~~dg~i~iwd~~ 428 (434)
++..|+.|+-|...
T Consensus 314 vtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 314 VTTTDSSIKRWKLE 327 (735)
T ss_pred eeeccccceecCCc
Confidence 78888899988764
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.5e-27 Score=207.13 Aligned_cols=256 Identities=25% Similarity=0.404 Sum_probs=207.2
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+..+..|.-+|++|+++|+.++.++++.|++|.-|++.+++...-+-....+... .+..
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~---------------------~~~~ 193 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS---------------------HGNP 193 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh---------------------ccCC
Confidence 6677889999999999999999999999999999999999765322111000000 0111
Q ss_pred EEe--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEE
Q 013881 223 LSL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIR 296 (434)
Q Consensus 223 ~~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 296 (434)
... ..|...+.+++.+++ +|++|+.|..|.||+.++. +.+..+.+|...|.+++|- .+.+++++.|++|+
T Consensus 194 ~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 194 LKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred CCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceE
Confidence 111 389999999999999 9999999999999999998 7888899999999999995 56899999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (434)
+|++.....+.++.+|+..|.++... +..+-+|+.|+++++|++.+..+ ..+..+ ...+-++++..+. .++
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~--~~sidcv~~In~~----Hfv 342 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGG--EGSIDCVAFINDE----HFV 342 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCC--CCCeeeEEEeccc----cee
Confidence 99999999999999999999999887 55666666999999999954432 233333 2456677776443 599
Q ss_pred EEeCCCeEEEEeCCCCccccccc--c---c--------CcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 375 CSCNDNSVRFYDLPSFAERGKIF--A---K--------QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 375 ~~~~dg~i~iwd~~~~~~~~~~~--~---~--------~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+|+.+|.|.+|++.+.+++.... | . ..|++++..|.. ++++|+.+|.|++|.+.+|
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99999999999999888776543 2 1 279999999998 9999999999999999987
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.8e-26 Score=200.00 Aligned_cols=272 Identities=15% Similarity=0.228 Sum_probs=224.3
Q ss_pred cceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 110 TDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 110 ~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
..|..++..+ +..++|+.|..+.++|...+ +.+..|+||...|+.+.|+|+...+++++.|..|+||.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~- 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT- 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-
Confidence 4677777755 68999999999999999998 9999999999999999999999999999999999999987654322
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
....|..+|+.+..++. +|++++.|++..+.|++++. .
T Consensus 298 ------------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~ 337 (506)
T KOG0289|consen 298 ------------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----Q 337 (506)
T ss_pred ------------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc----E
Confidence 35678999999999887 99999999999999999884 2
Q ss_pred ceeec--CccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 266 AASLK--GHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 266 ~~~~~--~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
+.... .....+++..|++ ..|.+|..|+.|++||+.++..+..|.+|+++|.+++|+ |-+|++++.|+.|++||
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 32222 2334578888864 478899999999999999999999999999999999998 67999999999999999
Q ss_pred cCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC--Cccccccc-ccCcEEEEEecCCc-EEEE
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS--FAERGKIF-AKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~-~~~~v~~~~~spdg-~l~s 415 (434)
++..+..+.+..... ..+.++.|...+. +|+.++.|=+|++++-.+ ..++..+. |.+..+.+.|.... ++++
T Consensus 418 LRKl~n~kt~~l~~~-~~v~s~~fD~SGt---~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEK-KEVNSLSFDQSGT---YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred ehhhcccceeecccc-ccceeEEEcCCCC---eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEee
Confidence 998887666655443 3677888765544 888888777777776443 44444443 45588999999888 9999
Q ss_pred eCCCCCEEEEEc
Q 013881 416 GDGTGQVRVWQW 427 (434)
Q Consensus 416 ~~~dg~i~iwd~ 427 (434)
++.|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 999999999865
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=208.10 Aligned_cols=282 Identities=19% Similarity=0.286 Sum_probs=217.2
Q ss_pred EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce----EEEEec--CCceEEEEe---CCCEEEEEcCCcE
Q 013881 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC----AGVINL--GGEVGCMIS---EGPWIFIGVTNFV 212 (434)
Q Consensus 142 ~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~--~~~~~~~~~---~~~~l~~~~~~~i 212 (434)
....|++|+..|+++++.|.|..|+||+.|-+|++||+..... .+.+.. ...+.++.+ .+.+|++......
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4456889999999999999999999999999999999976532 222221 123444432 4556667778899
Q ss_pred EEEECCCCceE-------------EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceee--cCccc
Q 013881 213 KAWNTQTNTDL-------------SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSL 274 (434)
Q Consensus 213 ~~w~~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~h~~ 274 (434)
+++|....+.. ...+|...+++-+|+|. .+++++.||++++||+.......+.+... .+...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99998776643 34689999999999998 89999999999999998765432322222 23445
Q ss_pred eEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE---EEEEccccc--cEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 013881 275 AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 275 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 345 (434)
++++++|+ +..|++|+.||.|.+|+...... ...-.+|.. .|++|.|+ +++|++-+.|+++++||+++...
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 67888886 66899999999999999865322 233346766 89999998 89999999999999999998754
Q ss_pred e-EEEeeecCCccEEEEEeccCCCCCcEEEEEeC------CCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEe
Q 013881 346 L-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~ 416 (434)
. ...........-..++|+|+.. +|++|+. .|.+.+||..+.+.+.++.- ...|..+.|+|.- .|++|
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred chhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 3 3333444445566788887765 8888864 57899999999999988765 6779999999988 99999
Q ss_pred CCCCCEEEEE
Q 013881 417 DGTGQVRVWQ 426 (434)
Q Consensus 417 ~~dg~i~iwd 426 (434)
+.||+++||=
T Consensus 476 sgdG~~~vyY 485 (641)
T KOG0772|consen 476 SGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEE
Confidence 9999999873
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=184.42 Aligned_cols=273 Identities=19% Similarity=0.314 Sum_probs=226.9
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEE--EecCccccEEEEEccC-CCCEEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLT--QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~--~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~ 179 (434)
...|..++..++|..+ .++.|+.|+++.+|+++.. +... ...+|.+.|-.++|+| ...+|++++.|.+|++||+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 3456778999999443 5777999999999999865 4433 3568999999999987 6789999999999999999
Q ss_pred CCCceEEEEecCCce--EEEEeCCCEEEEEc-CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 013881 180 ASGQCAGVINLGGEV--GCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~-~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vw 254 (434)
+.++++..+....+- .+..+++.+++++. +..|.+.|.++.+..........+..++|+.+ +++.....|.|.|.
T Consensus 95 r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 95 RSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred ccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 999999988876543 34456777777765 88999999999888877777778888888754 77777888999999
Q ss_pred EcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s 330 (434)
.+... +++..+++|.....|+.|+ |++|++|+.|..+.+||+...-|++.+..+.-+|..++|+ +++|++++
T Consensus 175 sypsL----kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 175 SYPSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ecccc----ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 98865 8999999999999999997 6799999999999999999999999999999999999998 89999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC---------CeEEEEeCC
Q 013881 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND---------NSVRFYDLP 388 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 388 (434)
+|..|-|=+++++..+..+.. ..+...++|+|..+ +|+-++.| |.|++|-++
T Consensus 251 EDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~---LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRP---LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccceEEeEecccCCeEEEeec---cCCceeEEecCCCc---eeeEEecCCCCccccccceeEEecCC
Confidence 999999999999877665543 34678899988766 88877754 566776554
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=203.98 Aligned_cols=277 Identities=15% Similarity=0.231 Sum_probs=218.9
Q ss_pred eEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCC-ceEEEEe-CCCEEEEEcCCcEEEEEC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMIS-EGPWIFIGVTNFVKAWNT 217 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~i~~w~~ 217 (434)
..+..|.||.+.|.+++=+|.. ..++||+.||.|+|||+...+++.++..+. .+..+.. .+.++.+|.|.+|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4567789999999999999977 789999999999999999999999999876 5666644 467777888999999998
Q ss_pred CCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCC
Q 013881 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD 292 (434)
Q Consensus 218 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d 292 (434)
+.....++. ....+..+.-+.. .++++++ .|.|||.... .++..+.-....|.++.+++ +.|++++.|
T Consensus 137 ~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 137 DGPPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred cCCcceeee-ccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheeeeccC
Confidence 875332222 2333444444333 6677665 4999999877 67788887788899999985 468899999
Q ss_pred CcEEEEeCCCCeEEEEEccccccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
+.|.+||+++.++++.+. -......|+|++ -.++++++|..++.||++............ ...+..+.|+|.+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~-- 285 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQ-- 285 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCCcc--
Confidence 999999999999887663 234456788884 478899999999999998765443333222 25699999998876
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
-+++|+.|.+|+||.+..+.....+.. .+.|.++.||-|. ++++|++|+.|++|...-
T Consensus 286 -EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 286 -EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred -hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 699999999999999988765544332 6779999999999 999999999999999764
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.5e-26 Score=220.79 Aligned_cols=298 Identities=19% Similarity=0.218 Sum_probs=230.0
Q ss_pred cceEEEEEeCCc--EEEec--CCCeEEEEeCCCC-----------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcE
Q 013881 110 TDILCRNWVQGN--CMYGE--KCKFLHSWTVGDG-----------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~--~d~~i~vwd~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v 174 (434)
..|..++.+++. +.+|+ .|+.++||+.+.- .+.+.++..|.+.|+|+.|+|||++||+||.|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 368888887775 45566 7788889987621 24567778899999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 013881 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (434)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 252 (434)
.||.....-.-..+.. .+....+.-|. ....+.+|...|..++|+|+ +|++++.|++|.
T Consensus 94 ~iW~~~~~~~~~~fgs---------------~g~~~~vE~wk----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGS---------------TGGAKNVESWK----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEeeecccCCcccccc---------------cccccccceee----EEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 9999874100000000 00011111111 12368899999999999998 999999999999
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccc------cEEEEEEc--
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS------VVMSLLCW-- 322 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~~l~~~-- 322 (434)
+|+..+- +.+..+.+|...|..+.|+ |++|++-+.|++|++|++.+....+.+..+-. ....+.|+
T Consensus 155 iwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 155 IWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 9998876 7899999999999999998 68999999999999999888777777766533 34667777
Q ss_pred CCEEEEEeC----CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC---CCCC-----------cEEEEEeCCCeEEE
Q 013881 323 DQFLLSCSL----DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD---SEGK-----------PVLLCSCNDNSVRF 384 (434)
Q Consensus 323 ~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------~~l~~~~~dg~i~i 384 (434)
|++|++... -.++.|.+-.+...-..+.+|.. ++..+.|.|. .+.. ..+|+|+.|++|.|
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 778887643 35678887665555556666665 5888888763 1111 17899999999999
Q ss_pred EeCCCCcccccccc--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 385 YDLPSFAERGKIFA--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 385 wd~~~~~~~~~~~~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
|.....+++..+.+ ...|.+++|+||| .|++++.||+|.+..++.+++
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99988888777665 7889999999999 999999999999999988764
No 87
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=208.42 Aligned_cols=223 Identities=18% Similarity=0.281 Sum_probs=160.2
Q ss_pred CCcEEEEECCCCce----EEecCCCCcEEEEEEeC-------------CEEEEEeCCCcEEEEEcCCCCCccc-------
Q 013881 209 TNFVKAWNTQTNTD----LSLSGPVGQVYAMAVGN-------------DLLFAGTQDGAILAWKFNVTTNCFE------- 264 (434)
Q Consensus 209 ~~~i~~w~~~~~~~----~~~~~~~~~v~~l~~~~-------------~~l~~g~~dg~i~vwd~~~~~~~~~------- 264 (434)
|..+++||++.-.. ..+..|..-|+.+..-| ..+++++.|++|++|++........
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 34555555544322 24455777777765543 1789999999999999876322100
Q ss_pred -----c---------------------ceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccE
Q 013881 265 -----P---------------------AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316 (434)
Q Consensus 265 -----~---------------------~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v 316 (434)
. .....+....+.+++.+ +++|++|..-|.|+|||+.+.+....+..|...|
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence 0 00011123345666665 6799999999999999999999999999999999
Q ss_pred EEEEEc-----CCEEEEEeCCCcEEEEEcCCCCceE-EEeeecC------------------------------------
Q 013881 317 MSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLE-VTYTHNE------------------------------------ 354 (434)
Q Consensus 317 ~~l~~~-----~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~------------------------------------ 354 (434)
.|+.++ .++|++++.|.-|.|||+...-.+. .+..|..
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g 584 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG 584 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc
Confidence 999998 3689999999999999986432211 1111110
Q ss_pred -----------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc----cCcEEEEEecCCc-EEEEeCC
Q 013881 355 -----------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA----KQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 355 -----------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~spdg-~l~s~~~ 418 (434)
...+..+...| ..+++++++.|..|+||+++++++...+.. ++....+...|.| +|++.+.
T Consensus 585 ~~f~r~t~t~~ktTlYDm~Vdp---~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs 661 (1080)
T KOG1408|consen 585 RLFPRHTQTLSKTTLYDMAVDP---TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS 661 (1080)
T ss_pred eeccccccccccceEEEeeeCC---CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec
Confidence 01122333322 334899999999999999999999988874 5678889999999 9999999
Q ss_pred CCCEEEEEccCCcccC
Q 013881 419 TGQVRVWQWCNGPVAT 434 (434)
Q Consensus 419 dg~i~iwd~~~g~~~~ 434 (434)
|.++.++|+.+|++++
T Consensus 662 dktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVA 677 (1080)
T ss_pred CCceEEEEeccchhhh
Confidence 9999999999999864
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-25 Score=186.82 Aligned_cols=265 Identities=18% Similarity=0.222 Sum_probs=204.1
Q ss_pred cccccceEEEEEeC--CcEE-EecCCCeEEEEeCCC-CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 106 AVIKTDILCRNWVQ--GNCM-YGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 106 ~~~~~~i~c~~~~~--~~~~-~g~~d~~i~vwd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
+.-++.|.+++|++ +.++ ++|-|++|++|+++. +...-+....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34466899999976 3444 788999999999986 3223355667999999999999999999999999999999999
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~ 257 (434)
++... +..|.++|..+.|-+. .|++|+.|.+|++||.+
T Consensus 104 ~Q~~~--------------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 104 GQVSQ--------------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred CCeee--------------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 86543 5678999999999766 78999999999999999
Q ss_pred CCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEE-c-cccccEEEEEEc--CCEEEEEeCCC
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL-T-EHTSVVMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~-~~~~~v~~l~~~--~~~l~s~s~dg 333 (434)
.. .++.++. -...+.++..-..+++.+..+..|.+|+++++...... . .-.-.+.++++. .+..+.|+-+|
T Consensus 146 ~~----~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 146 SS----NPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred CC----Ceeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 76 4444443 34567777777788999999999999999875432211 1 123345677665 55669999999
Q ss_pred cEEEEEcCCC--CceEEEeeecC-------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-cccCcEE
Q 013881 334 TIKVWFATDS--GNLEVTYTHNE-------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-FAKQEIR 403 (434)
Q Consensus 334 ~i~vwd~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~ 403 (434)
.+.|..+... ..-..+.-|.. -..|.+++|+|... .|++.+.||++.+||-.....+... .+..+|+
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg---tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpIt 297 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG---TLVTAGSDGTFSFWDKDARTKLKTSETHPQPIT 297 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc---eEEEecCCceEEEecchhhhhhhccCcCCCccc
Confidence 9999998875 33333444432 23567788888655 8999999999999999887777664 4689999
Q ss_pred EEEecCCc-EEEEe
Q 013881 404 AIQLGPGG-LFFTG 416 (434)
Q Consensus 404 ~~~~spdg-~l~s~ 416 (434)
+..|+.+| +++-+
T Consensus 298 cc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYA 311 (347)
T ss_pred eeEecCCCCEEEEE
Confidence 99999999 55543
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=206.79 Aligned_cols=247 Identities=22% Similarity=0.398 Sum_probs=208.1
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+...
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~---------------------------------- 211 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL---------------------------------- 211 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh----------------------------------
Confidence 4556678899999999999999999999999999999987665211
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIR 296 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 296 (434)
..++.+..+.|+++.|.++ .+++++.|+.+++|++... +...++.+|+..|+++.+. ...+++|+.|.+|+
T Consensus 212 -~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 212 -ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred -hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch----hhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 1136677888999999887 8999999999999999987 7889999999999999985 33499999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
+||+....|.+++. ..+.+..|...+..+++|..|++|++||++..........+. .+.++..+++.. .|+++
T Consensus 287 ~WDl~k~~C~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~---~lLss 359 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGL---ELLSS 359 (459)
T ss_pred hhhhhhhheecccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCe---EEeee
Confidence 99999988887764 345566777778889999999999999999887766655543 588888776554 67778
Q ss_pred eCCCeEEEEeCCCCcccccccc-----cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 377 CNDNSVRFYDLPSFAERGKIFA-----KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.|.++.+.|+++.+....+.. ....+.+.|||++ |+++|+.||.|+||++.+|+++
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 9999999999999887766543 4458999999999 9999999999999999999875
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.8e-26 Score=214.96 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=192.9
Q ss_pred cccccceEEEEEeCCc--EEEecCCCeEEEEeCCC--------------------------------C------------
Q 013881 106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD--------------------------------G------------ 139 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~--------------------------------~------------ 139 (434)
+.|++.|.|+.|+.++ +++|+.|+.|+||.+.. .
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 4899999999997764 66788999999998765 0
Q ss_pred ---------------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEE
Q 013881 140 ---------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204 (434)
Q Consensus 140 ---------------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (434)
.+++..|.||.+.|.+|+||. ..+|+|+|.|.|||||++...+|++.|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F---------------- 406 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF---------------- 406 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE----------------
Confidence 045667789999999999995 568999999999999999999988765
Q ss_pred EEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE
Q 013881 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281 (434)
Q Consensus 205 ~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 281 (434)
.|...|+|++|+|. ++++|+-||.|+||++... + +.....-..-|+++++
T Consensus 407 ----------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~----~-Vv~W~Dl~~lITAvcy 459 (712)
T KOG0283|consen 407 ----------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK----K-VVDWNDLRDLITAVCY 459 (712)
T ss_pred ----------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcC----e-eEeehhhhhhheeEEe
Confidence 58899999999986 9999999999999999875 2 3333333467787777
Q ss_pred --CCCEEEEecCCCcEEEEeCCCCeEEEEEcc--c------cccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEE
Q 013881 282 --GANKLYSGSMDNSIRVWNLETLQCIQTLTE--H------TSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 282 --~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~------~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~ 348 (434)
+|+..+.|+.+|.+++|+....+.+..+.- | ...|+.+.|. .+.+++.+.|..|||||.++...+..
T Consensus 460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence 577999999999999999998887665532 1 2279999998 45689999999999999988888877
Q ss_pred EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
+.+......-....|..+ +++|+++++|..|+||+....
T Consensus 540 fKG~~n~~SQ~~Asfs~D---gk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSD---GKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hcccccCCcceeeeEccC---CCEEEEeecCceEEEEeCCCC
Confidence 777665544445555543 349999999999999998543
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=190.54 Aligned_cols=251 Identities=23% Similarity=0.399 Sum_probs=209.3
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
+++++.|.||++.|..++.......+.+++.|.+.+||.++++.|+.+
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~-------------------------------- 185 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT-------------------------------- 185 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee--------------------------------
Confidence 478889999999999999988888999999999999999999999865
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC----C--------------------------------C
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT----T--------------------------------N 261 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~----~--------------------------------~ 261 (434)
..+|.+.|.++.|++. ++++++.|++..||..... . .
T Consensus 186 -----Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 186 -----YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred -----ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 5789999999999887 8889999999999972110 0 0
Q ss_pred ccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
...++..+.+|...|.+..| .++.+++++.|.+..+||+++++++..+.+|....+-++-+ .+++++.+.|.+.++
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence 12345667788888888877 47899999999999999999999999999999999888777 468889999999999
Q ss_pred EEcCCCC-ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC-cccccccccCcEEEEEecCCc-EEE
Q 013881 338 WFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF-AERGKIFAKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 338 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~spdg-~l~ 414 (434)
||++..- .+..+.+|. ..+.++.|..+. .+++|+.|.+|++||+++. .++..+....+++.++.+..+ .++
T Consensus 341 WDFReaI~sV~VFQGHt--dtVTS~vF~~dd----~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHT--DTVTSVVFNTDD----RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA 414 (481)
T ss_pred ccchhhcceeeeecccc--cceeEEEEecCC----ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence 9998543 233444444 457888776654 3899999999999999875 466777789999999999988 899
Q ss_pred EeCCCCCEEEEEccCCccc
Q 013881 415 TGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 415 s~~~dg~i~iwd~~~g~~~ 433 (434)
.--++..|++||+....+.
T Consensus 415 iPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred eccCCceEEEEecCCCccc
Confidence 9999999999999876654
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.3e-25 Score=197.65 Aligned_cols=250 Identities=19% Similarity=0.303 Sum_probs=200.1
Q ss_pred CccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec
Q 013881 148 GHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
-|.+.|+.+.+-|.. ..+++.+..+.|.|||..+......... +-...+.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------~~~Pdl~L~ 174 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------ECRPDLRLK 174 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------cCCCceEEE
Confidence 489999999998854 5677788899999999876432221100 011223577
Q ss_pred CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC---ccccceeecCccceEEEEEEC---CCEEEEecCCCcEEE
Q 013881 227 GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRV 297 (434)
Q Consensus 227 ~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~v 297 (434)
+|...=++++|++. .|++++.|+.|++||+..... ...+...+.+|...|..++|. .+.|.+++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 88887888999887 999999999999999987654 245677789999999999996 468999999999999
Q ss_pred EeCC--CCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCc
Q 013881 298 WNLE--TLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 298 wd~~--~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
||+| +.++.....+|.+.|.+++|+ +..||+|+.|++|.+||+++... +..+..|. ..+..+.|+|..+ .
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~--dev~~V~WSPh~e--t 330 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE--DEVFQVEWSPHNE--T 330 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC--cceEEEEeCCCCC--c
Confidence 9999 667778888999999999998 56899999999999999998765 33333333 5699999998755 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcccc------------ccc---ccCcEEEEEecCCc--EEEEeCCCCCEEEEEcc
Q 013881 372 VLLCSCNDNSVRFYDLPSFAERG------------KIF---AKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~~------------~~~---~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~ 428 (434)
+|++++.|+.+.+||+..-.... .+. |...|..+.|+|.. .|++.++|+.+.||+..
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 89999999999999997532221 122 46789999999999 89999999999999986
No 93
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.2e-24 Score=203.63 Aligned_cols=220 Identities=15% Similarity=0.238 Sum_probs=160.4
Q ss_pred EEEEECCCCce-EEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc----cccceeecCccceEEEEEECC
Q 013881 212 VKAWNTQTNTD-LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC----FEPAASLKGHSLAVVSLVVGA 283 (434)
Q Consensus 212 i~~w~~~~~~~-~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~----~~~~~~~~~h~~~v~~l~~~~ 283 (434)
+++|+...... ..+.+|...|.+++|+|+ +|++|+.|++|++||+...... ..+...+.+|...|.+++|++
T Consensus 56 I~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred EEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 34444433322 257899999999999975 8999999999999999764211 123456788999999999985
Q ss_pred C---EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccE
Q 013881 284 N---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358 (434)
Q Consensus 284 ~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 358 (434)
. .|++++.|++|++||+++++.+..+. |...|.+++|+ +.+|++++.|+.|+|||++++..+..+..|......
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 3 46789999999999999998887775 66789999998 789999999999999999998877766666543222
Q ss_pred EEEEeccCCCCCcEEEEEeCCC----eEEEEeCCC-CcccccccccCc---EEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 359 LALCGMPDSEGKPVLLCSCNDN----SVRFYDLPS-FAERGKIFAKQE---IRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~---v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..+.....+.+..+|++++.|+ +|+|||++. .+.+..+.+... +......+++ ++++|+.|+.|++|++..
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 2222111112333777777664 799999995 445544443332 3333345567 899999999999999987
Q ss_pred Ccc
Q 013881 430 GPV 432 (434)
Q Consensus 430 g~~ 432 (434)
+.+
T Consensus 295 ~~~ 297 (568)
T PTZ00420 295 GSI 297 (568)
T ss_pred CcE
Confidence 653
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=202.23 Aligned_cols=269 Identities=21% Similarity=0.310 Sum_probs=216.8
Q ss_pred ccccccceEEEEEeCCc-EEEecCCCeEEEEeCCCC-ceEEEEecCccccEEE-EEccC-CCCEEEEEECCCcEEEEECC
Q 013881 105 RAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSG-ITLPS-GSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~-~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~-l~~s~-~~~~l~s~s~dg~v~iwd~~ 180 (434)
...|+..|..++..++. ++.++.|+++++|+-..+ ....+.+.+|.+-|.. +++.+ ++-.|++|+.|.+|.+|.+.
T Consensus 10 l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred eccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 34567677666665555 677888999999998543 3344668889998887 88875 55569999999999999999
Q ss_pred CCceEEEEecCCc-eEEEEe--CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEc
Q 013881 181 SGQCAGVINLGGE-VGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (434)
Q Consensus 181 ~~~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~ 256 (434)
....+.++..+.. +.++.. ++.++..+.|.++++|-...-.. .+.+|...|+++..-|+ .+++|+.|.+|++|.-
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG 168 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-ccCCcchheeeeeecCCCcEEeccCcceeeeccC
Confidence 9999999887754 555553 33334445599999998755433 48999999999999888 9999999999999976
Q ss_pred CCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg 333 (434)
. +.+.++.+|...|..+++-+ ..|++++.||.|++|++ +++++.++.+|+..|.+++.. ++.++++++|+
T Consensus 169 ~------~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 169 G------TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR 241 (745)
T ss_pred C------chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc
Confidence 3 56889999999999999854 58999999999999999 889999999999999999844 78999999999
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
+++||+.. .+.+.+ .++. ..++++++.++++ |++|++||.|+||....
T Consensus 242 tlriW~~~--e~~q~I-~lPt-tsiWsa~~L~NgD----Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 242 TLRIWKKD--ECVQVI-TLPT-TSIWSAKVLLNGD----IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEeecC--ceEEEE-ecCc-cceEEEEEeeCCC----EEEeccCceEEEEEecc
Confidence 99999865 333333 3332 3588888887776 89999999999998763
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-24 Score=182.92 Aligned_cols=256 Identities=18% Similarity=0.290 Sum_probs=197.9
Q ss_pred EEEecCCCeEEEEeCCCC-----------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 122 CMYGEKCKFLHSWTVGDG-----------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
++.|+....|.-+++.-. +.++..++.|.++|++++. ++.++||||.|-+|+|||+.+...+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~--- 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGI--- 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcc---
Confidence 455666666666655421 2346677899999999998 489999999999999999988765543
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
+..|.+.|+++.|.+. .|++|+.||.|.+|+...- ..+
T Consensus 79 ----------------------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W----~~~ 120 (362)
T KOG0294|consen 79 ----------------------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW----ELL 120 (362)
T ss_pred ----------------------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe----EEe
Confidence 5678999999999887 7999999999999998765 889
Q ss_pred eeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 013881 267 ASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 341 (434)
..+++|...|+.++.+ +.+.++.+.|+.+++||+-+|+.-..+.- +... .+.|+ |++++.+..+ .|-+|.+.
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at--~v~w~~~Gd~F~v~~~~-~i~i~q~d 197 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT--LVSWSPQGDHFVVSGRN-KIDIYQLD 197 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce--eeEEcCCCCEEEEEecc-EEEEEecc
Confidence 9999999999998886 56788999999999999998876555543 2222 26666 7777777654 68899887
Q ss_pred CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEe--cCCc-EEEEeC
Q 013881 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQL--GPGG-LFFTGD 417 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~--spdg-~l~s~~ 417 (434)
+......+... ..+.++.|.. +..|++|..|+.|.+||..+..+...+. |+..|.++.+ .|++ +|+|++
T Consensus 198 ~A~v~~~i~~~---~r~l~~~~l~----~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 198 NASVFREIENP---KRILCATFLD----GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred cHhHhhhhhcc---ccceeeeecC----CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 65443333222 2344554432 2279999999999999999877766654 6889999884 5667 999999
Q ss_pred CCCCEEEEEccCC
Q 013881 418 GTGQVRVWQWCNG 430 (434)
Q Consensus 418 ~dg~i~iwd~~~g 430 (434)
.||.|+|||+...
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 9999999999876
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.8e-25 Score=185.01 Aligned_cols=238 Identities=15% Similarity=0.232 Sum_probs=190.9
Q ss_pred cCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCC-ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEE
Q 013881 147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224 (434)
Q Consensus 147 ~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~ 224 (434)
..-++.|.+|+||| ...+|+.+|.|++||+|+++.. ..+. ..
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------------------------ka 67 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------------------------KA 67 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------------------------hh
Confidence 34678999999999 5556669999999999999863 3221 12
Q ss_pred ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC----EEEEecCCCcEEEE
Q 013881 225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDNSIRVW 298 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vw 298 (434)
...|.++|.+++|+.+ .+++|+.|+.+++||+.++ ....+..|..+|.++.|-+. .|++|+.|++|+.|
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 5678999999999998 9999999999999999986 35677889999999999532 58999999999999
Q ss_pred eCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
|++...++.++. -.+.+.++..-...++++..++.|.+|+++++............-.+.+++...+.+ ..+.|+-
T Consensus 143 D~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~---~~alGsi 218 (347)
T KOG0647|consen 143 DTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD---GFALGSI 218 (347)
T ss_pred ccCCCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC---ceEeeee
Confidence 999999988885 456788888778899999999999999998775544444444445678888877665 3588999
Q ss_pred CCeEEEEeCCCCcccc--ccc-cc---------CcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 379 DNSVRFYDLPSFAERG--KIF-AK---------QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 379 dg~i~iwd~~~~~~~~--~~~-~~---------~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+|.+.|..+..+.+.. .+. |. -.|++|+|+|.- .|+|++.||++.+||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 9999999998763322 222 21 247889999987 999999999999999653
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7e-24 Score=200.75 Aligned_cols=311 Identities=17% Similarity=0.249 Sum_probs=234.2
Q ss_pred cccccceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCC
Q 013881 106 AVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 106 ~~~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~ 182 (434)
..+...|+|+.-++ |.++.|..+|.|.++++..+ +.+.+|+.-.+.|+.++|..||. .|++|+..|.+.+||++..
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 34456788887654 67888999999999999998 99999985469999999999886 4667777899999999988
Q ss_pred ceEEEEec-C-CceEEEE--eCCCEEE-EEcCCcEEEEECC---------------------------------------
Q 013881 183 QCAGVINL-G-GEVGCMI--SEGPWIF-IGVTNFVKAWNTQ--------------------------------------- 218 (434)
Q Consensus 183 ~~~~~~~~-~-~~~~~~~--~~~~~l~-~~~~~~i~~w~~~--------------------------------------- 218 (434)
+.+..... + +.+.... +....++ ++.|+.+++|-.+
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 76655541 1 1111111 1222222 2334444333222
Q ss_pred -------------------------------------------------------------------------CCce--E
Q 013881 219 -------------------------------------------------------------------------TNTD--L 223 (434)
Q Consensus 219 -------------------------------------------------------------------------~~~~--~ 223 (434)
.... .
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 1111 0
Q ss_pred Ee-----cCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEcCCCCCccccceee---cCccceEEEEEECC--CEEEEecC
Q 013881 224 SL-----SGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGA--NKLYSGSM 291 (434)
Q Consensus 224 ~~-----~~~~~~v~~l~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~ 291 (434)
.+ ......+++++.+. ++.+.|+..|.|-+|++.++ .....+ ..|..+|+.++.++ +.+++++.
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG----i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG----IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC----eeecccccCccccCceeEEEecCCCceEEEccC
Confidence 11 11224455555543 47888889999999999887 334444 58999999999985 57999999
Q ss_pred CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCC
Q 013881 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (434)
Q Consensus 292 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
+|.+.+||..+..++..+.- ...+..+..+ ...++.+..|-.|+++|..+.+..+.+.+|.. .+.+++|+|++.
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n--ritd~~FS~Dgr- 589 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN--RITDMTFSPDGR- 589 (910)
T ss_pred cceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc--ceeeeEeCCCCc-
Confidence 99999999999888877754 3345555555 67899999999999999998888888888775 489999987765
Q ss_pred CcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCC-CCEEEEEc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGT-GQVRVWQW 427 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~d-g~i~iwd~ 427 (434)
+|++++.|++|++||+.++.++..+....+.+++.|+|+| +|||...| .-|++|-=
T Consensus 590 --WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 590 --WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred --EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999999999999999889999999999999 99999888 67999963
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.5e-25 Score=195.56 Aligned_cols=235 Identities=20% Similarity=0.289 Sum_probs=190.8
Q ss_pred cccEEEEEccCCCCE-EEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC
Q 013881 150 QKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~ 228 (434)
...|++|+|+|...+ +|+++. -.|.||+..+....++ +...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------------------------~srF 67 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------------------------FSRF 67 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------------------------HHhh
Confidence 378999999996543 444443 4588888876654433 3455
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCC
Q 013881 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 229 ~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~ 303 (434)
...++++.|-.| +|++|...|.|+++|+.+. ..+..+.+|+.++..+.|. +..|++|+.|+.+++||+.+.
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 678899999877 9999999999999996664 6788899999999999885 457999999999999999999
Q ss_pred eEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 304 QCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
.....+.+|+..|.+.++. +..+++|+.||.|++||++....... ...+..++-.+.+.|.+. ++++++ .+
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs---~iasAg-Gn 217 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV--ELNHGCPVESVLALPSGS---LIASAG-GN 217 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--EecCCCceeeEEEcCCCC---EEEEcC-CC
Confidence 8877999999999999998 45899999999999999998764333 344445688898887755 677665 56
Q ss_pred eEEEEeCCC-Cccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 381 SVRFYDLPS-FAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 381 ~i~iwd~~~-~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.|++||+.+ ++.+.... |...|+|+.+..++ .|++|+-|+.|++||+.+-++
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 899999995 45555555 88999999999999 999999999999999776554
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.4e-23 Score=186.87 Aligned_cols=313 Identities=17% Similarity=0.257 Sum_probs=237.7
Q ss_pred ccccccccceEEEEEeCCcEEEec--CC--------CeEEEEeCCCCceEEEEecCccccEEEEEccC--CCCEEEEE--
Q 013881 103 NNRAVIKTDILCRNWVQGNCMYGE--KC--------KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSG-- 168 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~~~~g~--~d--------~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~s~-- 168 (434)
+....|...|.|++..++.+..++ .. -.+++||..+- ..+..+..-...|++++|++ .|.+|+..
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L-~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL-STLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc-eeeeeeccccccceeeeecccCCCceEEEecC
Confidence 445678889999999998766653 11 26999998875 77788887888999999987 45555554
Q ss_pred ECCCcEEEEECCCCceEEEEecCCceEEEE---e-CCCEEEEEcCCcEEEEECCCCceEE----ecC-CCCcEEEEEEeC
Q 013881 169 SKDETVRVWDCASGQCAGVINLGGEVGCMI---S-EGPWIFIGVTNFVKAWNTQTNTDLS----LSG-PVGQVYAMAVGN 239 (434)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~i~~w~~~~~~~~~----~~~-~~~~v~~l~~~~ 239 (434)
+.+..+.+||...+......+...++.... + +..++++...+.+.+|+.+++.... +.. ....|.|++|.+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 446789999999988777777665544332 2 6667778889999999999987652 222 337899999999
Q ss_pred C-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEE-----------
Q 013881 240 D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCI----------- 306 (434)
Q Consensus 240 ~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~----------- 306 (434)
+ -+++|..+|.|.||+.... +.......|.+.|.++..- ...|++|+.|..|..||-. .+.+
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~----~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTN----RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGP 331 (626)
T ss_pred CCCEEeecCCceEEEEeCCCc----eEEeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCC
Confidence 9 9999999999999999776 4555555999999999885 3467789999999999832 1111
Q ss_pred -E-----------------------------EEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC
Q 013881 307 -Q-----------------------------TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 307 -~-----------------------------~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
+ ...+|......++.. .+++++++.|+.+++|+ +. ++. ....-
T Consensus 332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~-k~~--wt~~~ 406 (626)
T KOG2106|consen 332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH-KLE--WTKII 406 (626)
T ss_pred eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC-cee--EEEEe
Confidence 1 112455555555554 57899999999999998 22 222 22222
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
..+..++.|.|.+ .++.|+..|...+.|.++...+.......+++++.|+|+| +||.|+.|+.|+||.+..+
T Consensus 407 ~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 407 EDPAECADFHPSG----VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred cCceeEeeccCcc----eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 3457788887764 6999999999999999996666655558899999999999 9999999999999998764
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2e-24 Score=193.59 Aligned_cols=273 Identities=19% Similarity=0.309 Sum_probs=220.8
Q ss_pred cceEEEE-Ee-CCcEEEecCCCeEEEEeCCCC--ceEEEEecC--ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 110 TDILCRN-WV-QGNCMYGEKCKFLHSWTVGDG--FKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 110 ~~i~c~~-~~-~~~~~~g~~d~~i~vwd~~~~--~~~~~~l~~--h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
++|.|.. .+ +...++.+..|.|+|||+... ..++..|.. ....|.++.+.|||+.|++|+.-.+|.|||+..-.
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence 3455554 43 345566666789999999742 245555543 35789999999999999999999999999997654
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
..-.. .+.......++++.++| +.++++.||.|.|||+...
T Consensus 499 prika-----------------------------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-- 541 (705)
T KOG0639|consen 499 PRIKA-----------------------------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-- 541 (705)
T ss_pred cchhh-----------------------------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--
Confidence 22111 12333345677888888 8899999999999999987
Q ss_pred ccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
..++.+++|+..+.||.++ |..|.+|+.|.+||.||+++++.++.. ...+.|.++.+. +++|++|-+.+.+.|
T Consensus 542 --~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 542 --TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred --eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEE
Confidence 7889999999999999987 779999999999999999998776554 346778888877 789999999999999
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEe
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~ 416 (434)
....... ....+.++.-|+++.|.+.+. ++++.+.|+.+..|...-+..+.+......|.++.+|.|. +++||
T Consensus 619 lh~skp~---kyqlhlheScVLSlKFa~cGk---wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 619 LHTSKPE---KYQLHLHESCVLSLKFAYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred EecCCcc---ceeecccccEEEEEEecccCc---eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEec
Confidence 8765543 344455567799999987766 9999999999999999999999998889999999999999 99999
Q ss_pred CCCCCEEEEEcc
Q 013881 417 DGTGQVRVWQWC 428 (434)
Q Consensus 417 ~~dg~i~iwd~~ 428 (434)
+.|....||.+.
T Consensus 693 SGdkkATVYeV~ 704 (705)
T KOG0639|consen 693 SGDKKATVYEVI 704 (705)
T ss_pred CCCcceEEEEEe
Confidence 999999998763
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.6e-24 Score=181.68 Aligned_cols=258 Identities=14% Similarity=0.196 Sum_probs=201.0
Q ss_pred ccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCC--EEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~s~s~dg~v~iwd~~~~ 182 (434)
...|..+|+|++.+.-.+++|+.|.+|+|||+... ..+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 46789999999999999999999999999999987 77788888999999999988664 8999999999999999887
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+++.. +..|.++|+.++.+|. +.++.+.|+.++.||+-.+.
T Consensus 118 ~~~~s-------------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 118 ELLKS-------------------------------------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEeee-------------------------------------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 76655 6789999999999998 78889999999999998875
Q ss_pred CccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd 339 (434)
..+. ..+ .+..........|++++.+..+ .|-+|.+.+......+... ..+.++.|. +.+|++|..|+.|++||
T Consensus 161 ~a~v--~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFV--LNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred ccee--ecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEec
Confidence 4321 222 2223333333347788877765 5889999887766665433 556777776 88999999999999999
Q ss_pred cCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC-----cccccccccCcEEEEEec
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF-----AERGKIFAKQEIRAIQLG 408 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~s 408 (434)
..+...+..+..|.. .|-.+.+..++ ...+|++++.||.|++||++.. +++..+.....++|+...
T Consensus 236 ~ds~~~~~~~~AH~~--RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHEN--RVKDIASYTNP-EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred cCCCccceeeecchh--heeeeEEEecC-CceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 988777777777664 46666544333 3359999999999999999876 344444445666666543
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.8e-25 Score=179.09 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=194.7
Q ss_pred cccccceEE--EEEeCCcEEEecCCCeEEEEeCCCCc--eEEEEecCccccEEEEEcc-C-CCCEEEEEECCCcEEEEEC
Q 013881 106 AVIKTDILC--RNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLP-S-GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 106 ~~~~~~i~c--~~~~~~~~~~g~~d~~i~vwd~~~~~--~~~~~l~~h~~~V~~l~~s-~-~~~~l~s~s~dg~v~iwd~ 179 (434)
..|++-|-. ++|....+++.+.|++|+|+.+.... +++.+|.||+++|..++|. | .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 345554433 46678889999999999999998543 7899999999999999994 4 7999999999999999998
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEE
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWK 255 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd 255 (434)
+.++-.+. .....|...|++++|.|. .|++++.||.|.|.+
T Consensus 88 ~~g~w~k~-----------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 88 ENGRWTKA-----------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CCCchhhh-----------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 87743221 135679999999999998 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC----------------CEEEEecCCCcEEEEeCCCCe--EEEEEccccccEE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA----------------NKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSVVM 317 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~ 317 (434)
++.. ...........|...|.++++.+ ..|++|+.|..|+||+..+++ .-++|.+|.+.|.
T Consensus 133 ~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 133 YDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred EcCC-CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 9876 22344556678999999998842 359999999999999998753 3456889999999
Q ss_pred EEEEcC------CEEEEEeCCCcEEEEEcCCC-CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 318 SLLCWD------QFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 318 ~l~~~~------~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
.+++.+ .+|++++.||++.||-.+.. +.-+....+.....+..+.|+..+. +|++++.|+.|.+|.-..
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc---EEEEecCCcEEEEEEeCC
Confidence 999873 48999999999999977643 2222222333445688888887766 999999999999997543
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7e-25 Score=179.67 Aligned_cols=248 Identities=18% Similarity=0.220 Sum_probs=195.7
Q ss_pred EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEE
Q 013881 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~ 224 (434)
....|++.|.++.+.-.|++|||++.|++|+|+.++...... ....
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------------------------------ll~~ 51 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------------------------------LLAE 51 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------------------------------eeeE
Confidence 345799999999999999999999999999999998764321 1236
Q ss_pred ecCCCCcEEEEEEeC-C---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC----CEEEEecCCCcEE
Q 013881 225 LSGPVGQVYAMAVGN-D---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSIR 296 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~-~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~ 296 (434)
+.+|.++|..++|.. . +|++++.||.|.||.-..+ .+........|...|++++|-+ -.|++++.||.|.
T Consensus 52 L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 52 LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred ecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 899999999999954 3 9999999999999998776 3566778889999999999964 3699999999999
Q ss_pred EEeCCCC---eEEEEEccccccEEEEEEcC----------------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCcc
Q 013881 297 VWNLETL---QCIQTLTEHTSVVMSLLCWD----------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG 357 (434)
Q Consensus 297 vwd~~~~---~~~~~~~~~~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 357 (434)
|.+.++. ...+....|.-.|+++++.+ +.|++|+.|..|+||+..+..-........+...
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 9998764 22344567999999998862 4699999999999999887632222212233457
Q ss_pred EEEEEeccCC-CCCcEEEEEeCCCeEEEEeCCCCccc--ccccc--cCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 358 VLALCGMPDS-EGKPVLLCSCNDNSVRFYDLPSFAER--GKIFA--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 358 ~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+..+++.|.- -....|++++.||+|.||........ .++.+ ...+..+.||..| .|+.++.|+.|.+|.-.
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 8889988864 33457999999999999987632111 12222 5679999999999 99999999999999855
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.8e-24 Score=192.02 Aligned_cols=250 Identities=19% Similarity=0.287 Sum_probs=197.7
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC---------ceEEEEecCccccEEEEEccCC-CCEEEEEECC
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG---------FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKD 171 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~---------~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~d 171 (434)
.-.|.+.|+-+.+.+. .+.+++.++.|+|||..+. ..+-..|.||++.=++|+|++. .-.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 4678888888888443 3555678899999998742 1223378999998889999884 4579999999
Q ss_pred CcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCC
Q 013881 172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQD 248 (434)
Q Consensus 172 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~d 248 (434)
++|++||+........ .......+.+|...|..++|++. ++++++.|
T Consensus 200 ~~i~lwdi~~~~~~~~------------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK------------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred CcEEEEeccccccCCc------------------------------cccceEEeecCCcceehhhccccchhhheeecCC
Confidence 9999999976543100 00122357899999999999876 89999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc--
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW-- 322 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~-- 322 (434)
+.+.|||.++. ..++.....+|..+|.+++|+ +..|++|+.|++|++||+|+ .+++.++.+|...|..+.|+
T Consensus 250 ~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 250 GKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999974 227788889999999999997 45899999999999999998 45789999999999999999
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCc-----------eEEEeeecC-CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGN-----------LEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
...|++++.|+.+.|||+..-+. ...++.|.. ...|..+.|.|..+ ..|++.+.|+.+.||...
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCCceEEEeecc
Confidence 46899999999999999975432 233444433 34577788877655 578889999999999986
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.1e-25 Score=184.82 Aligned_cols=261 Identities=15% Similarity=0.236 Sum_probs=199.1
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce---EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
...+..|+.++.+-+|++||.+++||+.|..|+|.|++..-. ...+..+ +.+.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~------------------------~~qa 160 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG------------------------DTQA 160 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC------------------------Cccc
Confidence 345678999999999999999999999999999999873210 0000000 0000
Q ss_pred --CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCC
Q 013881 220 --NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (434)
Q Consensus 220 --~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 293 (434)
....++..|...|+++.|+|. +|++|+.|++|+++|+..... +.....-....+|.+++|. |++|+.|....
T Consensus 161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 112267889999999999998 999999999999999986532 2222222345678888875 78999999999
Q ss_pred cEEEEeCCCCeEEEEE---ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 294 SIRVWNLETLQCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
++++||+.+.++...- ..|++.|+++.++ +++.++++.||.|++||--+.+++..+...+....+.+..|..++
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~- 317 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG- 317 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-
Confidence 9999999999987654 3589999999998 789999999999999999888888888877777778888776554
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccccC------cEEEEEecCCc-EEEEeC-CCCCEEEEEccCCcc
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQ------EIRAIQLGPGG-LFFTGD-GTGQVRVWQWCNGPV 432 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~spdg-~l~s~~-~dg~i~iwd~~~g~~ 432 (434)
+++++++.|..+++|++.++..+..+.+.+ --+...|+... +++.-. ..+.+.-||.+++..
T Consensus 318 --kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 318 --KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred --eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 499999999999999999999887765421 12334465555 554443 467788888877643
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.2e-23 Score=165.73 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=202.8
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe-cCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
++.+..|+ ...+|.+++|+|.|.+.+.|+..++++|-....-..++.-. .......+
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v--------------------- 80 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSV--------------------- 80 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeE---------------------
Confidence 45566665 56789999999999999999999999987654321111000 00000000
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc-cccceeecCccceEEEEEEC------CCEEEEe
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-FEPAASLKGHSLAVVSLVVG------ANKLYSG 289 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~~v~~l~~~------~~~l~s~ 289 (434)
.......|.+.|+|.+|++. ++++|+.|.+|++.-++..+.. .-....+.-|.+.|..++|- +..|+++
T Consensus 81 --~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 81 --LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred --EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 01134568999999999998 9999999999999887765332 23445677899999999982 2356655
Q ss_pred c-CCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC-----CccEEEEE
Q 013881 290 S-MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-----EHGVLALC 362 (434)
Q Consensus 290 s-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~ 362 (434)
+ .|..|++-|-..++..+.+.+|.+-|.++-.+ +-.+++|+.|.+|++||++-..++..+....+ ...+.+++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence 4 57889999999999999999999999888644 88999999999999999998877766654332 24566777
Q ss_pred eccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..|.+ ++|++|-.|.+..+||++.+..++.+. |...|+++.|+|.. +|++++.|..|++=|++.
T Consensus 239 vdpsg---rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 239 VDPSG---RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred ECCCc---ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 65544 499999999999999999999998875 68899999999999 999999999999999864
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1e-23 Score=177.30 Aligned_cols=286 Identities=22% Similarity=0.293 Sum_probs=212.7
Q ss_pred CCCCcccccccccceEEEEEeC---CcEEEecCCCeEEEEeCCCCc-----------eEE---EEecCccccEEEEEccC
Q 013881 98 KNSNINNRAVIKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGF-----------KLL---TQLEGHQKVVSGITLPS 160 (434)
Q Consensus 98 ~~~~~~~~~~~~~~i~c~~~~~---~~~~~g~~d~~i~vwd~~~~~-----------~~~---~~l~~h~~~V~~l~~s~ 160 (434)
++........|.+.|+.+...+ ...+.|+.||.|.+||++... +++ ..-.+|+-.|..+.|-|
T Consensus 32 Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 32 LNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred ccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 3444466788999999998833 347779999999999998431 010 11236888999999988
Q ss_pred -CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC
Q 013881 161 -GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN 239 (434)
Q Consensus 161 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~ 239 (434)
|.-.+.+++.|.+++|||..+.+....|+.++ .|++-+++|
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~--------------------------------------~VYshamSp 153 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG--------------------------------------KVYSHAMSP 153 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEEeecCc--------------------------------------eeehhhcCh
Confidence 67788899999999999999988877766443 334444443
Q ss_pred C-----EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC---EEEEecCCCcEEEEeCCCC-eEEEEE-
Q 013881 240 D-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETL-QCIQTL- 309 (434)
Q Consensus 240 ~-----~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~-~~~~~~- 309 (434)
- ++++|..+-.|++.|+..+ .....+.+|...|.++.|++. .|++|+.||.|++||++.. .+...+
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEee
Confidence 3 8899999999999999998 788999999999999999875 4899999999999999864 333333
Q ss_pred -------------ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccE--EEEEeccCCCCCcE
Q 013881 310 -------------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV--LALCGMPDSEGKPV 372 (434)
Q Consensus 310 -------------~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 372 (434)
..|.+.|..++|. +.++++++.|..+++|+..+++.....+.......- ..+... ..... .
T Consensus 230 ~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-v 307 (397)
T KOG4283|consen 230 QHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-V 307 (397)
T ss_pred cccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccc-e
Confidence 3567788899997 789999999999999999887654433322111111 111111 01111 3
Q ss_pred EEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
++---.++.+.++.+-+++.+..+. |...|.+.++-|+- ...+|+.|+.|..|-.
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 3333356889999998888887766 45678888999998 9999999999999975
No 108
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=186.97 Aligned_cols=249 Identities=19% Similarity=0.265 Sum_probs=191.5
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+..+.+..|++.|.-+.||++|++|||++.|.+..+|++.....+..
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl--------------------------------- 261 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL--------------------------------- 261 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee---------------------------------
Confidence 55677889999999999999999999999999999999765433221
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee-cCccceEEEEEEC--CCEEEEecCCCcE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG--ANKLYSGSMDNSI 295 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i 295 (434)
..++.+|..+|..+.|+|| +|++++.|..+.+||+.++. ....+ .++...+.+.+|. +..+++|+.|+.|
T Consensus 262 -~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd----~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 262 -KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD----LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTI 336 (519)
T ss_pred -eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch----hhhhcccCcCCCcceeEEccCCceeEecCCCCcE
Confidence 2358899999999999999 99999999999999999984 33332 2345677777774 5689999999999
Q ss_pred EEEeCCCCeEEEEEcccc-ccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcE
Q 013881 296 RVWNLETLQCIQTLTEHT-SVVMSLLC--WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
..||+... .+...++-. ..|.+++. +|+++++.+.|..|++++..+........ .+.++.+++.+.++ ++
T Consensus 337 ~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis---e~~~its~~iS~d~---k~ 409 (519)
T KOG0293|consen 337 IMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS---EEQPITSFSISKDG---KL 409 (519)
T ss_pred EEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc---ccCceeEEEEcCCC---cE
Confidence 99998653 344444322 34666665 48999999999999999987655443222 23457788776544 48
Q ss_pred EEEEeCCCeEEEEeCCCCccccccccc---CcEEEEEecC-Cc-EEEEeCCCCCEEEEEccCCcccC
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKIFAK---QEIRAIQLGP-GG-LFFTGDGTGQVRVWQWCNGPVAT 434 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp-dg-~l~s~~~dg~i~iwd~~~g~~~~ 434 (434)
+++.-.+..|++||++....+.++.++ .-|..-+|.- +. ++++|++|+.|+||+..+|++++
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 888889999999999988888777642 2233344543 33 99999999999999999998763
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=186.74 Aligned_cols=280 Identities=21% Similarity=0.335 Sum_probs=220.5
Q ss_pred ecCCC-eEEEEeCCCCceEEEEecCc-cccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCceEE-EEecCCceEEEEe-
Q 013881 125 GEKCK-FLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAG-VINLGGEVGCMIS- 199 (434)
Q Consensus 125 g~~d~-~i~vwd~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~- 199 (434)
++.|. .+.+||+.+| ....++++- ...-.++..- .+.+++++.. -..|.+|.+....... .+-.++++.++..
T Consensus 13 sS~d~~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTG-TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCC-ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34443 5999999999 666666654 2222222221 3356666654 4579999998765544 5566778888864
Q ss_pred -CCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC-----CCccccceee
Q 013881 200 -EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASL 269 (434)
Q Consensus 200 -~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~ 269 (434)
.+.+++++ -.+.+++|.+.+|..+ .+..|-..|+++.|+.| +|++|+.||.|.+|.+..- +...++...+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 77888888 6899999999999987 67899999999999998 9999999999999987432 1134778889
Q ss_pred cCccceEEEEEEC-C---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 013881 270 KGHSLAVVSLVVG-A---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 270 ~~h~~~v~~l~~~-~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 343 (434)
..|+-+|+.+... | .++++++.|.++++||+..+.++.++. ....+.+++.+ +..+.+|+.+|.|.+.++...
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 9999999999986 2 389999999999999999999988874 56778888888 789999999999999887543
Q ss_pred C----------------ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEE
Q 013881 344 G----------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQ 406 (434)
Q Consensus 344 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 406 (434)
. ....+.++.....+.+++.+.++. +|++|+.||.|.|||+.+.+.+.++. ..++|+.+.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt---lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT---LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCcc---EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 2 234455555556889999887766 99999999999999999999999988 589999999
Q ss_pred ecCC
Q 013881 407 LGPG 410 (434)
Q Consensus 407 ~spd 410 (434)
+.|-
T Consensus 327 i~~~ 330 (476)
T KOG0646|consen 327 INPL 330 (476)
T ss_pred eecc
Confidence 8553
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=198.79 Aligned_cols=291 Identities=19% Similarity=0.263 Sum_probs=223.5
Q ss_pred ccccccceEEEEE--eCCcEEEecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEc-cCCCCEEEEEECCCcEEEEECC
Q 013881 105 RAVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 105 ~~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~-s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
...|.+-|+-+.. ....++.+|.|.+|++|+...+. -++.++..|++.|.|+++ -++..++|||+-|+.|.|||+.
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 3455554444444 23368899999999999998653 577888999999999999 7889999999999999999999
Q ss_pred CCc--eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec-CCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 181 SGQ--CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
++. .+..++. -..-.+. ++...|++++.++. .+++|+..+.|++||
T Consensus 149 ~~~~~l~~s~n~-----------------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 149 TGTATLVASFNN-----------------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred Ccchhhhhhccc-----------------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 883 3332221 0011122 88999999999998 999999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC--CEEEEEeC
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSL 331 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~ 331 (434)
.++. +.+..+.+|+..|..+..+ |..+++++.||+|++||+...+|+.++..|...|.++..++ .++.+|+.
T Consensus 200 prt~----~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 200 PRTC----KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred cccc----cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 9998 6788889999999999885 77999999999999999999999999999999999999985 58999999
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc-----------------
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG----------------- 394 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------- 394 (434)
||.|..=|+++......+....+ ++..+......+ -+-+++.|+.|+-|..+-...+.
T Consensus 276 d~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~---~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~ 350 (735)
T KOG0308|consen 276 DGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDN---SVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSC 350 (735)
T ss_pred CCcEEecccCCchhheEeecCCC--chhhhhhccccC---CceeeeccccceecCCccccccccCCCCCcccccCCCccc
Confidence 99999999998755554444433 344444432222 24677789999999764321110
Q ss_pred --------cccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 395 --------KIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 395 --------~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+.+...|...++-.|. +++|=...|.+.+||+-.++.+
T Consensus 351 ~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 351 DLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred cccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeeh
Confidence 11122334455556677 9999999999999999876654
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.3e-22 Score=177.81 Aligned_cols=265 Identities=17% Similarity=0.241 Sum_probs=209.1
Q ss_pred ccceEEEEEe-CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 109 KTDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 109 ~~~i~c~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
+.-|.|++|. ++..++|..+|.|.||+..+. +..++...|.+.|.+++.-.+|.+|- |+.|..|..|| ..-+.++.
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-cccccccc
Confidence 3689999994 567999999999999999876 77777679999999999999998555 99999999999 55555555
Q ss_pred EecC---CceEEEEe-CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 188 INLG---GEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 188 ~~~~---~~~~~~~~-~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.+.+ +.+..+.. .+.+++....+.|..=.++.+-.+...+|......++.+|+ ++++++.|+.+++|+ ..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~-- 398 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH-- 398 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC--
Confidence 5555 45666665 34444445577787788899888899999999999999988 999999999999999 22
Q ss_pred ccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vw 338 (434)
++... ..-..++.++.|++ ..++.|+..|...+.|.++...+..-.. .++++++.|+ |.+|+.|+.|+.|+||
T Consensus 399 --k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 399 --KLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred --ceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 22222 12234566677653 2899999999999999999776666555 8999999998 8899999999999999
Q ss_pred EcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 339 FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
-+...+.............+..+.|+++++ +|.+-+.|-.|..|..
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~---~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQ---FLVSNSGDYEILYWKP 520 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCc---eEEeccCceEEEEEcc
Confidence 998777655555444447888888887766 7888777878888843
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=187.42 Aligned_cols=256 Identities=20% Similarity=0.295 Sum_probs=198.6
Q ss_pred EECC-CcEEEEECCCCceEEEEecCCceEEE---EeCCCEEEEEc--CCcEEEEECCCCceEE-ecCCCCcEEEEEEeCC
Q 013881 168 GSKD-ETVRVWDCASGQCAGVINLGGEVGCM---ISEGPWIFIGV--TNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND 240 (434)
Q Consensus 168 ~s~d-g~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~--~~~i~~w~~~~~~~~~-~~~~~~~v~~l~~~~~ 240 (434)
++.| .++.+||+++|....+++........ .-.+.+++++. ...+.+|.+....... ..--.+.|.+++-+|.
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 3444 45999999999998888876332211 12344555543 4488999988776653 4445678999999888
Q ss_pred --EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCC---------CCeEEE
Q 013881 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE---------TLQCIQ 307 (434)
Q Consensus 241 --~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~---------~~~~~~ 307 (434)
+|+.|+..|.|++|.+.++ ..+..+.+|-..|+++.|+ +.+|++|+.||.|.+|++. +-+++.
T Consensus 93 G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred ceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 6677779999999999999 7788889999999999996 5699999999999999863 356788
Q ss_pred EEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEE
Q 013881 308 TLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 383 (434)
.+..|.-+|+.+... ..+|++++.|.++++||+..+..+..+.. +..+.+++..|. ++.+++|+.+|.|.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpa---e~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPA---ERVVYIGTEEGKIF 242 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEccc---ccEEEecCCcceEE
Confidence 999999999999987 35999999999999999987755444333 244667766554 44899999999999
Q ss_pred EEeCCCCcc----------------cccc-cccC--cEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 384 FYDLPSFAE----------------RGKI-FAKQ--EIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 384 iwd~~~~~~----------------~~~~-~~~~--~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.++..... +..+ .|.+ +|++++++-|| +|++|+.||.|+|||+.+.+++
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 988754331 1111 1344 89999999999 9999999999999999987765
No 113
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-23 Score=172.02 Aligned_cols=228 Identities=18% Similarity=0.279 Sum_probs=189.2
Q ss_pred EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEE
Q 013881 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~ 224 (434)
.|+||+.+++.|.++.+|.+|+|++.|.++.||-...|+.+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt------------------------------------- 47 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT------------------------------------- 47 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee-------------------------------------
Confidence 4689999999999999999999999999999999888887766
Q ss_pred ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC-----CCcE
Q 013881 225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-----DNSI 295 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-----dg~i 295 (434)
..+|.+.|+++..+.+ .+++|+.|.++++||+.++ +.+..++ -..+|..+.|+ +++++.... .+.|
T Consensus 48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG----k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG----KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC----cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 6789999999998877 9999999999999999998 4455444 34566666664 666555443 4679
Q ss_pred EEEeCC-------CCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC
Q 013881 296 RVWNLE-------TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (434)
Q Consensus 296 ~vwd~~-------~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
.++|++ ..+++..+..+.+.++...|. +++|++|.+||.|.+||++++..+...... +...+..++++++
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRD 201 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCC
Confidence 999998 456788888889999999888 899999999999999999987654443222 2246888888776
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC
Q 013881 367 SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 367 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~ 418 (434)
.. ++++++.|.+-++||..+.+.+.++....+|++.+++|-. .++.|+.
T Consensus 202 ~T---~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 202 RT---YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred cc---eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence 55 9999999999999999999999999999999999999977 5555543
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-23 Score=175.42 Aligned_cols=273 Identities=16% Similarity=0.230 Sum_probs=189.6
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc-----eEE-EEecCCceEEEE--eCCC-EEEEE-cCCcE
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----CAG-VINLGGEVGCMI--SEGP-WIFIG-VTNFV 212 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-----~~~-~~~~~~~~~~~~--~~~~-~l~~~-~~~~i 212 (434)
+..|++|.+.|++++|+.||++|+|++.|++|+||++++.. +++ .++.+ ....+. ++-. +++.. ..+.+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998642 222 12222 222222 2333 33333 35588
Q ss_pred EEEECCCCceE-------------EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccce--
Q 013881 213 KAWNTQTNTDL-------------SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA-- 275 (434)
Q Consensus 213 ~~w~~~~~~~~-------------~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-- 275 (434)
++|.+...+.- ....|...+..+-.... +|++++.|..|.+|+++ + +.+..+......
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G----q~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G----QLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C----ceeeeecccccccc
Confidence 88876554321 12235555666655555 99999999999999998 3 344444433333
Q ss_pred EEEEEECCCEEEEecCCCcEEEEeCC---C-----CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC--
Q 013881 276 VVSLVVGANKLYSGSMDNSIRVWNLE---T-----LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS-- 343 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~dg~i~vwd~~---~-----~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~-- 343 (434)
-..++++|+++++++..--|++|.+- . -..+..+++|++.|..++|+ ...+++.+.||+++|||+.-.
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 34556678899999999999999863 2 23467789999999999999 579999999999999997521
Q ss_pred -----CceEEE--eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--ccCcEEEEEecCCc-EE
Q 013881 344 -----GNLEVT--YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--AKQEIRAIQLGPGG-LF 413 (434)
Q Consensus 344 -----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~spdg-~l 413 (434)
..++.. ..+.....-..+..+|.++ .|+.+ ....|++|..++++....+. |...|.+|+|+++| ++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---SLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCc---EEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 111111 1112223344677777665 55544 45689999999988776655 68899999999999 77
Q ss_pred EEeCCCCCEEEEE
Q 013881 414 FTGDGTGQVRVWQ 426 (434)
Q Consensus 414 ~s~~~dg~i~iwd 426 (434)
+|++ |..+++..
T Consensus 389 atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 389 ATCG-DRYVRVIR 400 (420)
T ss_pred eeec-ceeeeeec
Confidence 7665 56677765
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=192.06 Aligned_cols=272 Identities=18% Similarity=0.211 Sum_probs=197.2
Q ss_pred cEEEecCCCeEEEEeCCCC-----ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceE
Q 013881 121 NCMYGEKCKFLHSWTVGDG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (434)
.++.+..||.|.++|...- ...+.....|..+|.++.|-|....|++++.|.++++||+++.+++..-
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------- 138 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------- 138 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-------
Confidence 3566779999999998742 1224566789999999999997789999999999999999998876431
Q ss_pred EEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc----------
Q 013881 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---------- 262 (434)
Q Consensus 196 ~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~---------- 262 (434)
...+|...|.+++|.+. .|++|+.||.|.|||++.....
T Consensus 139 ----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 139 ----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred ----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 36789999999999876 9999999999999998755310
Q ss_pred -------------cccceeecCccce----EEEEEE-CCCEEEEecC-CCcEEEEeCCCCeEEEEE--------ccc---
Q 013881 263 -------------FEPAASLKGHSLA----VVSLVV-GANKLYSGSM-DNSIRVWNLETLQCIQTL--------TEH--- 312 (434)
Q Consensus 263 -------------~~~~~~~~~h~~~----v~~l~~-~~~~l~s~s~-dg~i~vwd~~~~~~~~~~--------~~~--- 312 (434)
.+.+.....+... |+.+.| +...|++++. |+.|+|||++........ ..|
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 0011112233333 455666 4678998887 999999999976543322 223
Q ss_pred cccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceE--EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 313 TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 313 ~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
.-.+.++..+ |.+|++.+.|+.|++|++.....-. .+..+........-..+| ++.++++|+.|...++|.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC---CCceEeccCCCcceeeeeec
Confidence 2345666666 7888888889999999998654322 222222111112222333 33499999999999999998
Q ss_pred CCccccc--ccccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCC
Q 013881 389 SFAERGK--IFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 389 ~~~~~~~--~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g 430 (434)
+.+.-.. +.|.-+|++++|.|.. -++++++|-.++||++..+
T Consensus 348 ~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 348 SPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 8664433 4468889999999876 8899999999999999764
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=178.27 Aligned_cols=241 Identities=21% Similarity=0.313 Sum_probs=205.9
Q ss_pred EEecCccccEEEEEccC---CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 144 TQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt--------------------------------- 54 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT--------------------------------- 54 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---------------------------------
Confidence 45689999999999975 899999999999888888777776665
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIR 296 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 296 (434)
+.+|.+.|++...+.+ ..++++.|-+-++||.-++ ..+..+ .|..-|.+++|+ .++|++|+.+..+|
T Consensus 55 ----feghkgavw~~~l~~na~~aasaaadftakvw~a~tg----delhsf-~hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 55 ----FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG----DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred ----eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh----hhhhhh-hhhheeeeEEecccchhhhccchHHHhh
Confidence 6789999999999988 7889999999999999887 444444 377778888886 46899999999999
Q ss_pred EEeCCCC-eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 297 VWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 297 vwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
|||++.. .+...+.+|.+.|..+.|. ++.|++.+.|++||+||.+++..++.+.... .+.++..++++. +
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~----i 198 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS---PVTSLEVSQDGR----I 198 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC---CCcceeeccCCC----E
Confidence 9999874 4577889999999999887 7789999999999999999998777666543 477777776655 5
Q ss_pred EEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
++-...+.|.+||..++.++..+.....|.+..++|+. .+++|++|..++.||+.+|+-+
T Consensus 199 lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred EEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 55557789999999999999999989999999999999 9999999999999999998754
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-22 Score=171.63 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=207.1
Q ss_pred ccccccceEEEEEe--CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~--~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
.+.-++.|..+.|+ .+.++.++.||++++|++... .+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 34446789999995 456888999999999999986 6666665 999999999986 567999999999999999999
Q ss_pred ceEEEEecCCceEEEEe---CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCC
Q 013881 183 QCAGVINLGGEVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~ 259 (434)
+....-.+...+.|+.. .+.+++.+.|+.|++||.+.....-.......|.++....+.|++|+.+..+.+||++..
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 98888888888888864 566677778999999999975555444455699999999999999999999999999987
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC----eEEEEEcccc---------ccEEEEEEc--
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL----QCIQTLTEHT---------SVVMSLLCW-- 322 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~---------~~v~~l~~~-- 322 (434)
...+ ...-..-...+.+++.- +.-+++++-||.|.+=.++.. +....|+.|. -+|.+++|+
T Consensus 166 ~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 166 DEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 5432 12222334456666664 457899999999998777655 3344555553 368899999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
.+.|++|+.||.|.+||+.+.+.+..+.... ..|.+++|+.++. .||+++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~---~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGS---LLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCC---eEEEEec
Confidence 5689999999999999999887777766653 4577888876555 7888863
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=185.88 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=181.9
Q ss_pred EEEEEeC---------CcEEEecCCCeEEEEeCCC--CceEEEE------------------ecCccccEEEEEccCC-C
Q 013881 113 LCRNWVQ---------GNCMYGEKCKFLHSWTVGD--GFKLLTQ------------------LEGHQKVVSGITLPSG-S 162 (434)
Q Consensus 113 ~c~~~~~---------~~~~~g~~d~~i~vwd~~~--~~~~~~~------------------l~~h~~~V~~l~~s~~-~ 162 (434)
.|+.|.+ +.++.|+.|..|.|||+.- ...+..+ ..+|+.+|.+|+|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 6888832 2577899999999999862 1122222 2379999999999874 4
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-- 240 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-- 240 (434)
..|||||.|.+|++||+.++++..+ +..|...|.++.|++.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s-------------------------------------~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSS-------------------------------------ITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCccee-------------------------------------hhhcCCceeEEEecCCCc
Confidence 6899999999999999999998765 4568899999999987
Q ss_pred -EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCC-eEEEEEcccccc
Q 013881 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSV 315 (434)
Q Consensus 241 -~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~ 315 (434)
.|++|+.|++|.+.|.+.... ....-.-.+.|-.++|+ ...++++..||+|+-+|+|.. +++.+++.|.+.
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~----s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSN----SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred eEEEeccccceEEeeeccCccc----cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 999999999999999996421 11112234567788886 457999999999999999985 999999999999
Q ss_pred EEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC-ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 316 VMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 316 v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
|.+|+++ +.++++++.|+.|++|++....... ...+... ....++++. .....+++.|+..+.++|||+.+..
T Consensus 376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-v~~~~~~~~rl~c~~~~--~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-VKEHSFKLGRLHCFALD--PDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cceEEecCCCCcceeeccccceEEEEeecCCCCcc-cccccccccceeecccC--CCcceEEEecCccceEEEeecccCh
Confidence 9999998 6899999999999999987544322 2222211 122333333 3333478899999999999998876
Q ss_pred cccc
Q 013881 392 ERGK 395 (434)
Q Consensus 392 ~~~~ 395 (434)
.+.+
T Consensus 453 ~V~k 456 (463)
T KOG0270|consen 453 PVRK 456 (463)
T ss_pred hHHH
Confidence 6544
No 119
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.8e-22 Score=168.01 Aligned_cols=236 Identities=15% Similarity=0.225 Sum_probs=187.5
Q ss_pred CCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCc
Q 013881 191 GGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNC 262 (434)
Q Consensus 191 ~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~ 262 (434)
...+.++.+ ++.+++++ .|..+++||...++.. ++..+...+..++|... .++.++. |.+|+..++.++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--- 90 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---
Confidence 345666654 66777764 5679999999999887 56666667777777544 5555555 899999999998
Q ss_pred cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEc
Q 013881 263 FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 340 (434)
+.++.+.||...|.+|..+ ++.+++++.|++|++||++..++...+.....++.+....|-++|++.....|++||+
T Consensus 91 -kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 91 -KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred -ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 8899999999999999987 4799999999999999999999888887777777777666888888888889999999
Q ss_pred CCCC--ceEEEeee-cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc---cC-cEEEEEecCCc-E
Q 013881 341 TDSG--NLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---KQ-EIRAIQLGPGG-L 412 (434)
Q Consensus 341 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~-~v~~~~~spdg-~ 412 (434)
+.-. ....+... ........+.|++++. +|+.++..+.+++.|.-+|..+..+.. .. --....|+||+ +
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK---~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGK---SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCC---EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 8652 33333222 3345677888877665 888899999999999999997777653 11 12577899999 9
Q ss_pred EEEeCCCCCEEEEEccCCccc
Q 013881 413 FFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 413 l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+++|+.||+|++|++++|+.+
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEe
Confidence 999999999999999998754
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1e-21 Score=180.42 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=185.1
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEE-EEEECCCcEEEEECCCCceEEEEecCCceEEEEe
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 199 (434)
.+++++.|+.|++||+.++ +.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------- 70 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------- 70 (300)
T ss_pred EEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc----------
Confidence 3567788999999999988 78888886644 6789999999977 567788999999999887654432
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCCCCccccceeecCccceE
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
.+ ..+..+.++++ .+ +++..++.|++||+.+. +.+..+.. ...+
T Consensus 71 ---------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----~~~~~~~~-~~~~ 117 (300)
T TIGR03866 71 ---------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETR----KVLAEIPV-GVEP 117 (300)
T ss_pred ---------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC----eEEeEeeC-CCCc
Confidence 11 12345677776 44 44566899999999875 33444432 2234
Q ss_pred EEEEEC--CCEEEEecCCC-cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceEEEe
Q 013881 277 VSLVVG--ANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 277 ~~l~~~--~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~ 350 (434)
..+.++ ++++++++.++ .+.+||.++++.+..+... .....+.++ +++|+++ ..++.|++||+.+.+.+..+.
T Consensus 118 ~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 556664 66788777765 5778899988876655332 334556666 6666544 469999999998876554443
Q ss_pred eec-----CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEe-CCCCCEE
Q 013881 351 THN-----EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTG-DGTGQVR 423 (434)
Q Consensus 351 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~-~~dg~i~ 423 (434)
... .......+.+++++. .++++.+.++.|.+||+.+++....+.+...+.+++|+|+| +|+++ ..+|.|+
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGK--TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred ecccccccccCCccceEECCCCC--EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 211 111223455665544 23444456778999999988877666666789999999999 77775 5699999
Q ss_pred EEEccCCccc
Q 013881 424 VWQWCNGPVA 433 (434)
Q Consensus 424 iwd~~~g~~~ 433 (434)
+||+.+++++
T Consensus 275 v~d~~~~~~~ 284 (300)
T TIGR03866 275 VIDVAALKVI 284 (300)
T ss_pred EEECCCCcEE
Confidence 9999998864
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-22 Score=183.52 Aligned_cols=278 Identities=16% Similarity=0.303 Sum_probs=219.8
Q ss_pred cccccceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 106 AVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 106 ~~~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
.-...+|.|++++. +.++.+-.+|.|.+|++..+.-+...+.+++ ..|.+|+|+ ++..|++.+.+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 34456899999954 3456677999999999999878888888875 589999999 5667999999999999999998
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+.+.. +....+.|++++.+|. .+++|+.||.++.++...+.
T Consensus 101 k~~~~-------------------------------------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~ 143 (691)
T KOG2048|consen 101 KQKYN-------------------------------------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK 143 (691)
T ss_pred ceeEE-------------------------------------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce
Confidence 87655 3455678899999887 99999999977777766553
Q ss_pred CccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEc-------c-ccccEEEEEEc-CCEEEEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLT-------E-HTSVVMSLLCW-DQFLLSC 329 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~-------~-~~~~v~~l~~~-~~~l~s~ 329 (434)
. .....+.-..+.|.+++|+++ .+++|+.||.|++||..++..+.... . ...-|.++.+- ...|++|
T Consensus 144 I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg 221 (691)
T KOG2048|consen 144 I--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG 221 (691)
T ss_pred E--EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe
Confidence 2 334455556789999999864 68999999999999999988776221 1 23345666665 8899999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-----cccccccCcEEE
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE-----RGKIFAKQEIRA 404 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~ 404 (434)
..-|+|.+||...+..++.+..+... +.+++..++.+ .+++++.|+.|..|...+.+. ..+..|...|.+
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~ad--Vl~Lav~~~~d---~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDAD--VLALAVADNED---RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcc--eeEEEEcCCCC---eEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 99999999999998888877777654 77777655444 899999999999998887643 233446888999
Q ss_pred EEecCCcEEEEeCCCCCEEEEEccC
Q 013881 405 IQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 405 ~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
++..++ .+++|+.|..+.+-....
T Consensus 297 ~av~~~-~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 297 MAVIEN-ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeecc-eEEecceeeEEEEccccc
Confidence 999888 999999999988765543
No 122
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-22 Score=187.56 Aligned_cols=225 Identities=20% Similarity=0.270 Sum_probs=196.3
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecC-CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecC-ccce
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG-HSLA 275 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-h~~~ 275 (434)
....++++....|++|+..++....+.. +...|+++.|+++ +|++|..+|.|.|||.... +.+..+.+ |...
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~----k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ----KKTRTLRGSHASR 262 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc----cccccccCCcCce
Confidence 4567888888999999999998664443 3899999999988 9999999999999999887 66777777 9999
Q ss_pred EEEEEECCCEEEEecCCCcEEEEeCCCCeEEEE-EccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 276 VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
|-+++|++..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+ +.+|++|+.|+.+.|||......+..+..|
T Consensus 263 vg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H 342 (484)
T KOG0305|consen 263 VGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH 342 (484)
T ss_pred eEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence 999999999999999999999999998776655 88999999999998 789999999999999999777777777776
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEe--CCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEE--eCCCCCEEEEEc
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFT--GDGTGQVRVWQW 427 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s--~~~dg~i~iwd~ 427 (434)
.. .|.+++|+|...+ +||+|+ .|+.|++||..+++.+..+.....|..|.|++.. .|++ |..++.|.||++
T Consensus 343 ~a--AVKA~awcP~q~~--lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 343 TA--AVKALAWCPWQSG--LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ce--eeeEeeeCCCccC--ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 64 5999999998775 788876 6999999999999999999999999999999998 5555 446789999999
Q ss_pred cCCcc
Q 013881 428 CNGPV 432 (434)
Q Consensus 428 ~~g~~ 432 (434)
.+-+.
T Consensus 419 ps~~~ 423 (484)
T KOG0305|consen 419 PSMKL 423 (484)
T ss_pred cccce
Confidence 76544
No 123
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=3.4e-22 Score=176.42 Aligned_cols=240 Identities=19% Similarity=0.225 Sum_probs=189.7
Q ss_pred ccccccceEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|...|+.+.+.+ +..++++.|..|+||.+... ........|.++|+.+..+|.|+||++++.|++..+.|++++
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC
Confidence 456777888888854 46788999999999999876 566777889999999999999999999999999999999999
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
.++..... ....-.+++.+|+|| +|.+|+.|+.|++||+...
T Consensus 336 ~~lt~vs~-----------------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~- 379 (506)
T KOG0289|consen 336 SQLTVVSD-----------------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ- 379 (506)
T ss_pred cEEEEEee-----------------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-
Confidence 87754321 122345889999999 8889999999999999988
Q ss_pred CccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccc-cccEEEEEEc--CCEEEEEeCCCcE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCW--DQFLLSCSLDKTI 335 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~--~~~l~s~s~dg~i 335 (434)
.....+.+|+++|..++|+. -+|++++.|+.|++||++..+..+++.-. ...+.++.|+ |.+|+.++.|=+|
T Consensus 380 ---~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 380 ---TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ---cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 56788999999999999974 47999999999999999998887777643 3368888887 8999999888777
Q ss_pred EEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 336 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
++++-.+..-......+.+......+.|.... .++++++.|..++++.+
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a---q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHA---QYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccc---eEEeeccchhheEEeec
Confidence 77764433222222222222345566664433 49999999999988865
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=170.06 Aligned_cols=273 Identities=14% Similarity=0.227 Sum_probs=189.5
Q ss_pred eEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 112 ILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 112 i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
..|+.|+. +.++.|..||.|.|||..+- ..-+.|.+|..+|++++||+||++|+|+|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 67888865 35777889999999999996 7888899999999999999999999999999999999999999998887
Q ss_pred cCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
...++.. ..|+|. ..++.-.+..-.+-++..+.. ..+
T Consensus 105 f~spv~~--------------------------------------~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~L 144 (405)
T KOG1273|consen 105 FDSPVWG--------------------------------------AQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVL 144 (405)
T ss_pred ccCccce--------------------------------------eeeccccCCeEEEEEecCCcEEEEecCCce--eec
Confidence 6555443 333332 111111122222222222110 000
Q ss_pred ee-ecCccceE-E--EEEECCCEEEEecCCCcEEEEeCCCCeEEEEEcccc-ccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 267 AS-LKGHSLAV-V--SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 267 ~~-~~~h~~~v-~--~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
.. -.+....+ . .+...|+++++|...|.+.++|..+.+++..++-.. ..|..+.+. ++.|+.-+.|..||.|+
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 00 00000001 1 233358899999999999999999999999888766 677777777 89999999999999999
Q ss_pred cCCCCce----EEEeeec-----CCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCCcccccccc-c-CcEEEEEe
Q 013881 340 ATDSGNL----EVTYTHN-----EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSFAERGKIFA-K-QEIRAIQL 407 (434)
Q Consensus 340 ~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~-~~v~~~~~ 407 (434)
+++-... .....+. ....-..++|+.+ +. +++.++ ....++||....|.++..+.+ + .....+.|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d--ge-Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~w 301 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD--GE-YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNW 301 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC--cc-EEEeccccceeEEEEecCCcceeeeecCCchhheeeccc
Confidence 8632111 1111111 1112234555543 33 555554 456899999999999988876 3 56889999
Q ss_pred cCCc-EEEEeCCCCCEEEEEccC
Q 013881 408 GPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+|-. .+++- ..|.|+||....
T Consensus 302 hp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 302 HPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccceeeeeec-cCCceEEEEeec
Confidence 9998 66665 889999998754
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=5.3e-22 Score=184.58 Aligned_cols=323 Identities=19% Similarity=0.218 Sum_probs=241.0
Q ss_pred ccccccccceEEEEEe---CC--cEEEecCCCeEEEEeCCCCc--------------------eEE----------EEec
Q 013881 103 NNRAVIKTDILCRNWV---QG--NCMYGEKCKFLHSWTVGDGF--------------------KLL----------TQLE 147 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~---~~--~~~~g~~d~~i~vwd~~~~~--------------------~~~----------~~l~ 147 (434)
.....|.+-|..++|. .+ .+++++.|.+|+||.+.-+. ..+ ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 3456788888888882 21 25668899999999875221 111 2234
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc--eEEEEecCC-------ceEEEEe-CCCEEE-EEcCCcEEEEE
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGG-------EVGCMIS-EGPWIF-IGVTNFVKAWN 216 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~-------~~~~~~~-~~~~l~-~~~~~~i~~w~ 216 (434)
||++.|.++.|+|.+..|+++|.|.++.+|...+.. -+.....++ -..++.. ++..++ -+..|..++|.
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 999999999999999999999999999999887652 222222221 2233433 333344 46789999999
Q ss_pred CCCCce----EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-C-EEEE
Q 013881 217 TQTNTD----LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-N-KLYS 288 (434)
Q Consensus 217 ~~~~~~----~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~l~s 288 (434)
.+.... ..+.+|.+.|.++.|+|. +|++.+.|.+-+++-.-..+..+..+...+-|...++|+++-+ + .+++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 444322 257899999999999977 9999999999999876644444566677778999999999853 4 7899
Q ss_pred ecCCCcEEEEeCCC-------------------------------------------Ce---------------------
Q 013881 289 GSMDNSIRVWNLET-------------------------------------------LQ--------------------- 304 (434)
Q Consensus 289 ~s~dg~i~vwd~~~-------------------------------------------~~--------------------- 304 (434)
|.....+|+|+... |.
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 99999999997531 00
Q ss_pred ------------EEEEEccccccEEEEEEc--CCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEecc
Q 013881 305 ------------CIQTLTEHTSVVMSLLCW--DQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 305 ------------~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
.++.+.+|...|++++.+ ++++++++.. ..|++|+..+......+..|. -.++.+.|+|
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSp 582 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSP 582 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc--eEEEEEEECC
Confidence 011234788899999998 7899988764 459999988877777666665 4588999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCcccc-----cccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERG-----KIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
++. +|++.+.|.++.+|......... ...|..-|.+..|+|++ +++|+|.|.+|+||....+
T Consensus 583 dg~---~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 DGR---YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCc---EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 765 99999999999999985432221 12356679999999999 9999999999999999877
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.8e-21 Score=181.08 Aligned_cols=306 Identities=19% Similarity=0.273 Sum_probs=223.1
Q ss_pred EEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCC---EEEEEECCCcEEEEECCCCceEEEEecCC
Q 013881 116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQCAGVINLGG 192 (434)
Q Consensus 116 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~---~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 192 (434)
.|.+..+++-+....|.+||..+. .....+.||..+|+|+.|-|+.+ +|++|+.|+.|++|.++....+.....+.
T Consensus 21 sw~~~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g 99 (764)
T KOG1063|consen 21 SWGPGGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG 99 (764)
T ss_pred cccccceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC
Confidence 456667777777889999999986 78889999999999999998877 89999999999999999665544444433
Q ss_pred ---ceEEEEeCCCEEEE-EcCCcEEEEECCCCceE-----EecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCC
Q 013881 193 ---EVGCMISEGPWIFI-GVTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 193 ---~~~~~~~~~~~l~~-~~~~~i~~w~~~~~~~~-----~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~ 259 (434)
.+.|+......+.+ ..++.+.+|+.+..+.. .+.....-..|+++.++ +++.|+.+..|.++.-..
T Consensus 100 ~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~- 178 (764)
T KOG1063|consen 100 HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA- 178 (764)
T ss_pred cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC-
Confidence 34444433333333 57999999999666522 12212222234444443 788888888888887663
Q ss_pred CCccccceeecCccceEEEEEEC---C-C-EEEEecCCCcEEEEeCCCCe---------------------EEE------
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG---A-N-KLYSGSMDNSIRVWNLETLQ---------------------CIQ------ 307 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~---~-~-~l~s~s~dg~i~vwd~~~~~---------------------~~~------ 307 (434)
..+.....+.+|...|.+++|. + + +|+++|.|..||||.+.-+. ...
T Consensus 179 -d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 179 -DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred -cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 3568889999999999999995 2 3 68999999999999764221 111
Q ss_pred ----EEccccccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceEEEeee-----cCCccEEEEEeccCCCCCcEEEEE
Q 013881 308 ----TLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 308 ----~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
.+.+|...|+++.|.+ ..|++++.|.++.+|...+..-+..-... ..........|++++. .+++-
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~ 334 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAH 334 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEe
Confidence 1238999999999993 47999999999999987665333222111 1123467777877664 88899
Q ss_pred eCCCeEEEEeCCCCc----ccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 377 CNDNSVRFYDLPSFA----ERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
+..|-.++|...... +...-.|...|+.++|+|.| +|++.+.|.+-|+|--
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 999999999843321 12222367899999999999 9999999999998754
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=186.89 Aligned_cols=255 Identities=17% Similarity=0.204 Sum_probs=211.2
Q ss_pred cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC-ceEEEEe-cCCceEEEEeC-CCEEEEEcCCcEEEEECCCCceE
Q 013881 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMISE-GPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 147 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
-+|+..-+.|+|.|+|++|++++.||.|++|+.... +.-.++. .+..+.++... +.++++..++.|.+|.+..++.-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 368899999999999999999999999999998766 5555555 56677777654 44555566889999999988876
Q ss_pred -EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEE
Q 013881 224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVW 298 (434)
Q Consensus 224 -~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw 298 (434)
.+....-++..++++.+ +++.|+.|-.|++.++... .....+.+|..+|.++.+++ ++|++.+.||.|++|
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 56677788999999888 9999999999999999887 56788999999999999985 589999999999999
Q ss_pred eCCCCeEEEEEcc-------c-cccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 299 NLETLQCIQTLTE-------H-TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 299 d~~~~~~~~~~~~-------~-~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
|+.++.+..++.+ . ...+..++|+ +..|+....|+.|++|+.........+........+..+.|+|.+.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9999888777653 1 3455777888 5689999999999999998888777777666666688888887755
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG 411 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg 411 (434)
|||+++.||.|.|||.++.+ +......|.+++|.|+.
T Consensus 246 ---YiAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 246 ---YIAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKPNA 282 (933)
T ss_pred ---EEeeeccCCcEEEEecccch---hccccceeEEEecCCCC
Confidence 99999999999999999822 22236789999999987
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-21 Score=165.26 Aligned_cols=248 Identities=14% Similarity=0.253 Sum_probs=183.9
Q ss_pred cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec
Q 013881 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 147 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
.+|.+-|+++.|.+.|+.+||++.|++|+|||..+..-.-... -...
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T---------------------------------s~Wr 56 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT---------------------------------SSWR 56 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe---------------------------------eeEE
Confidence 5799999999999999999999999999999975543211110 1356
Q ss_pred CCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCC-----CCccccceeecCccceEEEEEECCC----EEEEecCCC
Q 013881 227 GPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT-----TNCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDN 293 (434)
Q Consensus 227 ~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg 293 (434)
.|.+.|..+.|.+. .+++++.|+++.||.-... ...+....++......|+.+.|.+. .+++++.||
T Consensus 57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 79999999999654 8999999999999976321 1224455667778889999999754 699999999
Q ss_pred cEEEEeCCCC------eEEEEEc-------cccccEEEEEEc-----CCEEEEEeCC-----CcEEEEEcCCCC-ceEEE
Q 013881 294 SIRVWNLETL------QCIQTLT-------EHTSVVMSLLCW-----DQFLLSCSLD-----KTIKVWFATDSG-NLEVT 349 (434)
Q Consensus 294 ~i~vwd~~~~------~~~~~~~-------~~~~~v~~l~~~-----~~~l~s~s~d-----g~i~vwd~~~~~-~~~~~ 349 (434)
.||||+.-.. .+..++. .+..+..|+.|+ ..+|++|+.+ +.++||...+.. +....
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 9999986542 2233333 466777889887 4577777765 589999876654 22222
Q ss_pred e-eecCCccEEEEEeccCCC-CCcEEEEEeCCCeEEEEeCCCCc--------------------ccccc-cccCcEEEEE
Q 013881 350 Y-THNEEHGVLALCGMPDSE-GKPVLLCSCNDNSVRFYDLPSFA--------------------ERGKI-FAKQEIRAIQ 406 (434)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~-~~~~~v~~~~ 406 (434)
. .......|..++|.|+.. .-.+|++++.|| |+||.+.... .+..+ .|.++|..+.
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 1 123446799999998643 334789999999 9999987411 11111 2577999999
Q ss_pred ecCCc-EEEEeCCCCCEEEEEcc
Q 013881 407 LGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 407 ~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
|+-.| .|++.+.||+|++|+..
T Consensus 296 wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 296 WNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeeeEEeecCCCceeeehhhh
Confidence 99999 99999999999999854
No 129
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.3e-22 Score=180.81 Aligned_cols=276 Identities=16% Similarity=0.220 Sum_probs=209.6
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe----CCCEEEEEcCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS----EGPWIFIGVTNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~~w~ 216 (434)
.+-..+.||++.|.+|+..|.|.+|++|+.||+|+||.+.+|.|++++...+.+.|+.+ +..+|+++....+.+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 45567889999999999999999999999999999999999999999999999999876 33455555544444444
Q ss_pred CCCCc--------------------------------------eEEecCCCCcEEEEEEeCC--EEEEEeC---CCcEEE
Q 013881 217 TQTNT--------------------------------------DLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILA 253 (434)
Q Consensus 217 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~v 253 (434)
..-+. ......|...|..+.|+.. +|++..- ...|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 32221 1133457788999999877 7776655 356899
Q ss_pred EEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE
Q 013881 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (434)
+++... .....+....+.|.++.|++. +|++++ ...|++||+...++++.+......|..++.+ |+.|+.+
T Consensus 551 HQLSK~----~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 551 HQLSKR----KSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred Eecccc----cccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 998876 334455556677888999864 455554 4689999999988888888888888888888 6899999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC------c---cccccc-c-
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF------A---ERGKIF-A- 398 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~---~~~~~~-~- 398 (434)
+.|+.+..+|+.-.........++ ...+.++++++.-+ ++++|+.||++.||.-.-. . ++..+. |
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryP---Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYP---LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccc---eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999997665443333332 24688888887766 9999999999999854221 1 112222 2
Q ss_pred ---cCcEEEEEecCCc-EEEEeCCCCCEEEE
Q 013881 399 ---KQEIRAIQLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 399 ---~~~v~~~~~spdg-~l~s~~~dg~i~iw 425 (434)
.-.|..+.|+|.. .|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 2347888999999 99999999999998
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.6e-20 Score=169.41 Aligned_cols=227 Identities=17% Similarity=0.235 Sum_probs=185.4
Q ss_pred ccceEEEEEe-CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 109 KTDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 109 ~~~i~c~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
...|-.++|. .+.++..+.+|.|.-||+.++ +++..+..-.++|.+++.+|.++.++.|+.||.+...+...++....
T Consensus 69 drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~ 147 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK 147 (691)
T ss_pred CCceeeEEEccCCeEEeecCCceEEEEecccC-ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE
Confidence 4489999998 557888889999999999998 88889999999999999999999999999999889999888876655
Q ss_pred EecC---CceEEEEe--CCCEEEEEc-CCcEEEEECCCCceEE-----ecC----CCCcEEEEEEeCC-EEEEEeCCCcE
Q 013881 188 INLG---GEVGCMIS--EGPWIFIGV-TNFVKAWNTQTNTDLS-----LSG----PVGQVYAMAVGND-LLFAGTQDGAI 251 (434)
Q Consensus 188 ~~~~---~~~~~~~~--~~~~l~~~~-~~~i~~w~~~~~~~~~-----~~~----~~~~v~~l~~~~~-~l~~g~~dg~i 251 (434)
.... +.+.++.+ ++..+++|. |+.|++||..++..+. +.+ ...-|+++.|-.+ .|++|...|+|
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V 227 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTV 227 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceE
Confidence 5443 45667765 444467665 7789999999988764 222 3345778887666 99999999999
Q ss_pred EEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE----EEEEccccccEEEEEEcCCE
Q 013881 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC----IQTLTEHTSVVMSLLCWDQF 325 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~~~~ 325 (434)
.+||...+ ..+.....|...|.+++.. ++++++++.|+.|..|...+.+. ......|...|.+++..+..
T Consensus 228 ~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~ 303 (691)
T KOG2048|consen 228 TFWDSIFG----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENA 303 (691)
T ss_pred EEEcccCc----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecce
Confidence 99999988 6788889999999999986 57999999999999998876543 23344688889999988888
Q ss_pred EEEEeCCCcEEEEEc
Q 013881 326 LLSCSLDKTIKVWFA 340 (434)
Q Consensus 326 l~s~s~dg~i~vwd~ 340 (434)
+++|+.|..+.+-..
T Consensus 304 l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 304 LISGGRDFTLAICSS 318 (691)
T ss_pred EEecceeeEEEEccc
Confidence 888888888777543
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.5e-21 Score=170.10 Aligned_cols=275 Identities=12% Similarity=0.206 Sum_probs=209.5
Q ss_pred ccceEEEEEeCC--cEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCCce
Q 013881 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~ 184 (434)
..+|+|+.|.+. -+++++.|+.++||-++.. ...++.+.--..+|.+.+|.|+|. .+++++.-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 458999999776 4788999999999998732 256777777788999999999998 999999999999999988775
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC-CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~-~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.+.-. +.++ ...+.....+++ +|+..+..|.|.+....++
T Consensus 293 ~k~~~-----------------------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-- 335 (514)
T KOG2055|consen 293 TKLKP-----------------------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-- 335 (514)
T ss_pred ccccC-----------------------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh--
Confidence 53311 1122 223445555555 9999999999999988876
Q ss_pred ccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccc---cEEEEEEcCCEEEEEeCCCcEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---VVMSLLCWDQFLLSCSLDKTIK 336 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~~~~~l~s~s~dg~i~ 336 (434)
+.+..++ -.+.|..+.|+ +..|++.+.+|.|.+||+++..+++.+....+ .-.|++.++.+|++|+..|.|.
T Consensus 336 --eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 336 --ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred --hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 5555554 35667788885 66899999999999999999999998865322 2233445589999999999999
Q ss_pred EEEcCCC------CceEEEeeecCCccEEEEEeccCCCCCcEEEEEe--CCCeEEEEeCCCCcccccccc----cCcEEE
Q 013881 337 VWFATDS------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLPSFAERGKIFA----KQEIRA 404 (434)
Q Consensus 337 vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~----~~~v~~ 404 (434)
|||..+. +.+..+... ...|..+.|.++.+ +|+.++ .+..+++-.+++......+.. -+.|+|
T Consensus 413 IYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~d~q---iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNHDAQ---ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred EeccchhhccCCCCchhhhhhh--heeeeeeeeCcchh---hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 9996532 122222222 24577888877766 777776 477899999998777666653 456999
Q ss_pred EEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 405 IQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 405 ~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
++|||.+ +|+.|..+|.|.+|.+.
T Consensus 488 ~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCCceEEeecCCCceeeEeec
Confidence 9999988 99999999999999975
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=169.43 Aligned_cols=218 Identities=19% Similarity=0.329 Sum_probs=174.6
Q ss_pred cCCCeEEEEeCCC---------------CceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 126 EKCKFLHSWTVGD---------------GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 126 ~~d~~i~vwd~~~---------------~~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
+..|.|+||++.. .++++.++.+|.+.=++|+|||- ...|+||..-+.|++|...++.-..
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v--- 248 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV--- 248 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee---
Confidence 3567899999853 24678899999999999999993 3348888888889999988764221
Q ss_pred cCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
. ...+.+|...|..|+|+|. .|++++.||+|+|||++.+.. +..
T Consensus 249 ----------------------------d---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--~~~ 295 (440)
T KOG0302|consen 249 ----------------------------D---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--KAA 295 (440)
T ss_pred ----------------------------c---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--cce
Confidence 1 1236679999999999987 999999999999999998754 344
Q ss_pred eeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCC---CeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEE
Q 013881 267 ASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET---LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vw 338 (434)
...+.|...|..|+|+.+ +|++|+.||+++|||+++ ++++..|+.|..+|+++.|+ ...|++++.|.+|.+|
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 445899999999999854 799999999999999986 67889999999999999999 5689999999999999
Q ss_pred EcCCCC----------------ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 339 FATDSG----------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 339 d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
|+.-.. ..+.++.|.....+-.+.|++--++ +|++.+.||.
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--~lvsTa~dGf 432 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--LLVSTAIDGF 432 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--eEEEecccce
Confidence 985322 2335556666666777888876654 6777777774
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-22 Score=190.97 Aligned_cols=237 Identities=19% Similarity=0.262 Sum_probs=186.4
Q ss_pred cEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCC
Q 013881 152 VVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG 230 (434)
Q Consensus 152 ~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~ 230 (434)
.+..+.|.. +.++|||++..|.|.+||+...-. ......+..|..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------------------------nk~l~~f~EH~R 134 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------------------------NKLLTVFNEHER 134 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc----------------------------------chhhhHhhhhcc
Confidence 345677754 678999999999999999976210 011124678999
Q ss_pred cEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCC-C
Q 013881 231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-L 303 (434)
Q Consensus 231 ~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~-~ 303 (434)
.+.++.|++. +|++|++||.|++||++.. +...++.+....|..+.|+ ++.|+++...|.+++||++. .
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecc----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence 9999999866 9999999999999999988 5566777788889999997 46899999999999999987 4
Q ss_pred eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe--CC
Q 013881 304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--ND 379 (434)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d 379 (434)
++...+.+|.++|.++.|+ ..+|++|+.|+.|+|||+.+.+.... .......++..+.|-|..+ ..|++++ .|
T Consensus 211 r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInTiapv~rVkWRP~~~--~hLAtcsmv~d 287 (839)
T KOG0269|consen 211 RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINTIAPVGRVKWRPARS--YHLATCSMVVD 287 (839)
T ss_pred hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEeecceeeeeeeccCcc--chhhhhhcccc
Confidence 5678889999999999999 56999999999999999986554332 2233335788899988766 4677766 47
Q ss_pred CeEEEEeCCCCccccc--ccccCcEEEEEecCC-c-EEEEeCCCCCEEEEEccC
Q 013881 380 NSVRFYDLPSFAERGK--IFAKQEIRAIQLGPG-G-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 380 g~i~iwd~~~~~~~~~--~~~~~~v~~~~~spd-g-~l~s~~~dg~i~iwd~~~ 429 (434)
-.|+|||++..-.... ..|...++.++|... . .|.+++.||+|..-.+++
T Consensus 288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 8999999987554433 246788999999763 3 899999999886555443
No 134
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.9e-21 Score=189.95 Aligned_cols=252 Identities=20% Similarity=0.316 Sum_probs=199.0
Q ss_pred ccccEEEEEccCCCCEEEEEE--CCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC-CCceEEe
Q 013881 149 HQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ-TNTDLSL 225 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~-~~~~~~~ 225 (434)
++..|.+|..+||+..++||+ .|+.++||+.+.-- ... ..++.. ....-.+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~------------------------~~~~~~l~k~l~~m 65 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEK------------------------EEKNENLPKHLCTM 65 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecccccc--chh------------------------hhhhcccchhheee
Confidence 456799999999999999999 89999999975321 000 011111 1122257
Q ss_pred cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC--------------CCccccceeecCccceEEEEEEC--CCEEE
Q 013881 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT--------------TNCFEPAASLKGHSLAVVSLVVG--ANKLY 287 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~--------------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 287 (434)
..|.+.|.|+.|+++ +||+|+.|+.|.+|+.... ...++....+.+|...|..+.|+ +.+|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 889999999999999 9999999999999998830 01245677889999999999998 45899
Q ss_pred EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC----CccEEEE
Q 013881 288 SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE----EHGVLAL 361 (434)
Q Consensus 288 s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~ 361 (434)
+++.|++|.+||.++.+.+..+.+|.+.|..+.|+ |+||++-+.|++|+||++.+.+..+.+..+.. ......+
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 99999999999999999999999999999999999 89999999999999999877655544443332 3456778
Q ss_pred EeccCCCCCcEEEEEeC----CCeEEEEeCCCCcccc-cccccCcEEEEEecCC--------c----------EEEEeCC
Q 013881 362 CGMPDSEGKPVLLCSCN----DNSVRFYDLPSFAERG-KIFAKQEIRAIQLGPG--------G----------LFFTGDG 418 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~spd--------g----------~l~s~~~ 418 (434)
.|+|++. +|++.-. -.++.|.+-.+.+.-. .+.|..++.++.|+|. | .+|+|+.
T Consensus 226 SWSPDG~---~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 226 SWSPDGH---HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred ccCCCcC---eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 8887766 8887642 3478898888877444 4557889999999981 1 4688999
Q ss_pred CCCEEEEEccC
Q 013881 419 TGQVRVWQWCN 429 (434)
Q Consensus 419 dg~i~iwd~~~ 429 (434)
|++|-||....
T Consensus 303 DrSlSVW~T~~ 313 (942)
T KOG0973|consen 303 DRSLSVWNTAL 313 (942)
T ss_pred CccEEEEecCC
Confidence 99999998753
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.9e-23 Score=192.26 Aligned_cols=238 Identities=25% Similarity=0.444 Sum_probs=201.1
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcC
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT 209 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (434)
.+++||... +..|...|.++..-..++.+++|+.|..+-+|.+..-..+.
T Consensus 15 ~Lr~~~~~~-------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~----------------------- 64 (825)
T KOG0267|consen 15 KLRVWDTRE-------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT----------------------- 64 (825)
T ss_pred ccccccchh-------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-----------------------
Confidence 355666443 35688889988887788899999999999999876544332
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CE
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NK 285 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~ 285 (434)
.+.+|...|.++.|+.. +|++|+.+|+|++||+... +.++++.+|...+.++.|++ .+
T Consensus 65 --------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA----k~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 65 --------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA----KIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred --------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh----hhhhhhhccccCcceeeeccceEE
Confidence 37889999999999988 8999999999999999987 77889999999999999985 57
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
+++|+.|..+++||.+...|...+.+|...|..+.+. |.+++++++|.+++|||+..++....+..+... +.++.+
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--v~sle~ 204 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--VQSLEF 204 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc--cccccc
Confidence 8899999999999999999999999999999998888 679999999999999999888777777766654 666666
Q ss_pred ccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCC
Q 013881 364 MPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg 420 (434)
.|.. .+++.|+.|++|++||+++++.+..... ...|.+..|+|++ .+++|....
T Consensus 205 hp~e---~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 205 HPLE---VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred Cchh---hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 5544 3899999999999999999998887765 6789999999999 777765543
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=8e-21 Score=168.92 Aligned_cols=284 Identities=17% Similarity=0.222 Sum_probs=206.1
Q ss_pred ccccccceEEEEEeCC----cEEEecCCCeEEEEeCC---CCceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEE
Q 013881 105 RAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVG---DGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV 176 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~----~~~~g~~d~~i~vwd~~---~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~i 176 (434)
...+...|+|++|.+. .+++|+..|.|-+||+. ....-+..+..|..+|.+|.|+| +...+++.|.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 5677889999999653 36678899999999994 33456777889999999999999 5578999999999999
Q ss_pred EECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 013881 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (434)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vw 254 (434)
-|++.......+. +......+.++.|+.+ .++.+..=|...+|
T Consensus 262 ~D~~~~i~e~v~s-----------------------------------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 262 QDFEGNISEEVLS-----------------------------------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred eeecchhhHHHhh-----------------------------------cCccceeeeeccccCCCccEEEeecccceEEE
Confidence 9998764322111 1223334556666655 66667777799999
Q ss_pred EcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeE----EEEEccccccEEEEEEc--CCE
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQC----IQTLTEHTSVVMSLLCW--DQF 325 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~--~~~ 325 (434)
|.++... ....+.-|...|.++++++ .+|++++.|++++|||++.-.. +-....|...|.+..|+ +..
T Consensus 307 D~R~~~s---~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 307 DLRTDGS---EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred EeecCCc---cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence 9998863 3445566888999999985 5799999999999999986332 33445799999999998 456
Q ss_pred EEEEeCCCcEEEEEcC---CCCceEEEeeecCC--cc--EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 326 LLSCSLDKTIKVWFAT---DSGNLEVTYTHNEE--HG--VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
|++.+.|..|+|||.. ..-.......|... .. .....|.| +..++++|-.-..|-|+|-..++.+..+..
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P---~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP---DYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC---CccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 9999999999999984 22222223333322 12 22334544 444999999888999999998887777554
Q ss_pred --cCcEEE-EEecCCc-EEEE-eCCCCCEEEEEccC
Q 013881 399 --KQEIRA-IQLGPGG-LFFT-GDGTGQVRVWQWCN 429 (434)
Q Consensus 399 --~~~v~~-~~~spdg-~l~s-~~~dg~i~iwd~~~ 429 (434)
...|.+ ..|+|-+ .+++ ++..|.|+||--+.
T Consensus 461 P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccccccccceeecccccceeccCCccceEEEEecCC
Confidence 224444 4799988 4555 45678888886544
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.1e-22 Score=186.35 Aligned_cols=233 Identities=18% Similarity=0.270 Sum_probs=181.8
Q ss_pred EEEE---eCCcEEEecCCCeEEEEeCCC--CceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 114 CRNW---VQGNCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 114 c~~~---~~~~~~~g~~d~~i~vwd~~~--~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
-+.| ..+-+++.+..|.|.+||+.. ..+++..|..|+..|+++.|++ ...+|+|||.||+|++||++..+...+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 3455 344578888999999999986 2377788999999999999987 567899999999999999998776544
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
+.+....|..+.|+|. .++++...|.+.+||++... +
T Consensus 172 -------------------------------------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r 211 (839)
T KOG0269|consen 172 -------------------------------------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---R 211 (839)
T ss_pred -------------------------------------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCch---h
Confidence 3345667888999876 89999999999999999876 6
Q ss_pred cceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc---CCEEEEEeC--CCcEE
Q 013881 265 PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW---DQFLLSCSL--DKTIK 336 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~---~~~l~s~s~--dg~i~ 336 (434)
+...+.+|.++|.++.|+++ +|++|+.|++|+|||+.+.+......- -..+|..+.|. ...|++++. |-.|+
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVH 291 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEE
Confidence 77888999999999999865 799999999999999987654433333 34678899998 357887775 88999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
|||++..-.....+..+. ..+..++|.. .+...+.+++.|++|..-.++.
T Consensus 292 VWDvrRPYIP~~t~~eH~-~~vt~i~W~~--~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 292 VWDVRRPYIPYATFLEHT-DSVTGIAWDS--GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred EEeeccccccceeeeccC-ccccceeccC--CCceeeEeecCccHHHHhhhhc
Confidence 999987765444443322 3466666654 2334788999999886655444
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=170.55 Aligned_cols=247 Identities=17% Similarity=0.238 Sum_probs=183.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEE-EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGV-INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN 239 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~ 239 (434)
.|+++|.|+.|..|.|||+.-...+.. +.++. ..+.. -.....+.....+|+..|.+++|+.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs---------------~~sk~--~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGS---------------KASKK--KKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeech---------------hhhhh--hhhhcccccccccchHHHHHHHhcc
Confidence 367999999999999999864432211 11000 00000 0000011123567999999999987
Q ss_pred C---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeEEEEEcccc
Q 013881 240 D---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313 (434)
Q Consensus 240 ~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 313 (434)
. .|++|+.|.+|++||+.++ ++...+..|...|.++.|. +..|++|+.|++|.+.|.+........-...
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g----~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTG----KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCC----CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence 7 9999999999999999999 7888888999999999997 5689999999999999999533322222345
Q ss_pred ccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCC-ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 314 SVVMSLLCW---DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 314 ~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
+.|-.++|+ ...+++++.||+|+-+|+|..+ .+..+..|.. .|..+++....++ ++++++.|+.|++|++..
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~--~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPG--LLSTASTDKVVKLWKFDV 405 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCc--ceeeccccceEEEEeecC
Confidence 677788887 5789999999999999999884 5555666655 5777777765553 799999999999999976
Q ss_pred Ccccccccc---cCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCcc
Q 013881 390 FAERGKIFA---KQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 390 ~~~~~~~~~---~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~~ 432 (434)
-.......+ -+...|+++.|+- .|+.|+..+.++|||+.+..-
T Consensus 406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 544333332 3447788888887 889999999999999987653
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6.5e-21 Score=169.51 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=198.2
Q ss_pred eEEEEecCccccEEEEEccCCC--CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
......+-|.+.|++++|+|.. +++|+|+.-|+|-+||+.+.+...
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------------------------- 224 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------------------------- 224 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------------------------------
Confidence 5556677789999999999954 588899999999999996332110
Q ss_pred CCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCC
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 293 (434)
.....+..|..+|.+|.|+|. .+++.+.||+|+.-|++.... +.+..+.........+.++ ...++.+..=|
T Consensus 225 -d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 225 -DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred -CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence 112246789999999999987 999999999999999987643 4444444344455666664 34577777777
Q ss_pred cEEEEeCCCCeE-EEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceE--EEeeecCCccEEEEEeccCC
Q 013881 294 SIRVWNLETLQC-IQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 294 ~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 367 (434)
...+||+++... ...+.-|...|.+++++ +.+|++++.|++.+|||++...... .+....+...|.+..|+|.+
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 999999998665 67777899999999998 6799999999999999998765444 35555666779999999876
Q ss_pred CCCcEEEEEeCCCeEEEEeC----CCCcccccccccC------cEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 368 EGKPVLLCSCNDNSVRFYDL----PSFAERGKIFAKQ------EIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~------~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
. .|++.+.|..|+|||. ....+...+.|.. ......|.|+. ++++|-.-..|-|+|-..++++
T Consensus 382 g---tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 382 G---TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred C---ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence 5 4899999999999999 4455666666622 23456899999 9999999999999999888743
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=8e-21 Score=165.07 Aligned_cols=255 Identities=19% Similarity=0.243 Sum_probs=188.3
Q ss_pred EEecCccccEEEEEccCC--CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 144 TQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
....+|.+.|..+.-++- ..+.++-+..|.|+||++...- ..+. +-.+.+-+.+...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~-------------------~~~~~~~~s~~~P 203 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS-------------------EPGLEVKDSEFRP 203 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc-------------------CccccccccccCc
Confidence 344568888888887764 4677777889999999986431 1111 0011111222334
Q ss_pred eEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcE
Q 013881 222 DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSI 295 (434)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i 295 (434)
..++.+|...=+.|.|+|- .|++|..-+.|++|...++.-. .-...+.+|+..|-.|.|++ +.|++++.||+|
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 4578889999999999996 7999999999999998875322 22345667999999999975 589999999999
Q ss_pred EEEeCCCC---eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCC---ceEEEeeecCCccEEEEEeccCC
Q 013881 296 RVWNLETL---QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG---NLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 296 ~vwd~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
+|||++.+ .++.+ +.|.+.|..|+|+ ..+|++|+.||+++|||+++.+ .+..+..|. .+|+++.|+|..
T Consensus 283 rIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk--~pItsieW~p~e 359 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK--APITSIEWHPHE 359 (440)
T ss_pred EEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc--CCeeEEEecccc
Confidence 99999987 34444 8899999999999 3489999999999999998654 334444444 469999999865
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcc-----------c------ccccc--cCcEEEEEecCCc--EEEEeCCCCCEEEEE
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAE-----------R------GKIFA--KQEIRAIQLGPGG--LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~-----------~------~~~~~--~~~v~~~~~spdg--~l~s~~~dg~i~iwd 426 (434)
.. .|++++.|.+|.|||+..... + ..+.| ...+..+.|++.- +|++.+.|| +.||.
T Consensus 360 ~s--~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 360 DS--VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred Cc--eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 53 789999999999999854211 0 11122 5678899999976 999999998 56654
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=9.1e-21 Score=161.99 Aligned_cols=278 Identities=17% Similarity=0.292 Sum_probs=199.2
Q ss_pred ecCccccEEEEEccC-----CCCEEEEEECCCcEEEEECCCCc---eEEEEecC---Cce-EEEEe-----CCCEEEE-E
Q 013881 146 LEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ---CAGVINLG---GEV-GCMIS-----EGPWIFI-G 207 (434)
Q Consensus 146 l~~h~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~---~~~-~~~~~-----~~~~l~~-~ 207 (434)
.+.|+.+|..++|.+ +...++|.+. ..+.+|.....- .++.+... +.. .+... .+.++++ |
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357889999999974 3345555555 568888876543 33333322 112 22211 3456655 5
Q ss_pred cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCcccccee---ecCccceEEEEE
Q 013881 208 VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS---LKGHSLAVVSLV 280 (434)
Q Consensus 208 ~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~h~~~v~~l~ 280 (434)
.-|.|++.|+.+++.. .+.+|...|..+.+.|+ ++++++.|.+|++|++++. .++.. +.+|...|.++.
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~----~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD----VCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC----eEEEEecccccccCcEEEEE
Confidence 6889999999998877 78999999999999988 8999999999999999987 44444 468999999999
Q ss_pred EC--CCEEEEecCCCcEEEEeCCCCeE------E-------------------E---EEccccccEEEEEEcCCEEEEEe
Q 013881 281 VG--ANKLYSGSMDNSIRVWNLETLQC------I-------------------Q---TLTEHTSVVMSLLCWDQFLLSCS 330 (434)
Q Consensus 281 ~~--~~~l~s~s~dg~i~vwd~~~~~~------~-------------------~---~~~~~~~~v~~l~~~~~~l~s~s 330 (434)
|+ +++|++++.|.+|++|++...+. . - +-.-|...|-|+.|-++++++-+
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSks 268 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKS 268 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecc
Confidence 96 67999999999999999983211 0 0 11247777888888899999999
Q ss_pred CCCcEEEEEcCC-CCceE----------EEeeec-CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc--cc
Q 013881 331 LDKTIKVWFATD-SGNLE----------VTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG--KI 396 (434)
Q Consensus 331 ~dg~i~vwd~~~-~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 396 (434)
-++.|..|..-. .+.+. .+.... ....+.-+.|..+.- .++|+.|...|.|.+||++..++.. ++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 999999997621 11100 111111 112234444444332 2389999999999999998876632 22
Q ss_pred cc---cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 397 FA---KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 397 ~~---~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.| ...|+..+|+.|| .|+...+|++|.-||.-+
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 22 5679999999999 999999999999998653
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.2e-21 Score=175.23 Aligned_cols=277 Identities=18% Similarity=0.315 Sum_probs=180.6
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEE--ecCccccEEEEEccC-CCCEEEEEECCCcEEEE
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQ--LEGHQKVVSGITLPS-GSDKLYSGSKDETVRVW 177 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~--l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iw 177 (434)
.....|.+.|..+.|.++. +++++.|.++++||+.++ +++.. +.||...|.+++|.| +...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 4567899999999998764 777889999999999987 77766 899999999999998 45678999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeC-CCcEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQ-DGAILAWK 255 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~-dg~i~vwd 255 (434)
|++....-........+.........=.--....++-|.... ....+.|+.+.|-.+ .|++++. |+.|+|||
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD 246 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS------NTIFSSVTVVLFKDESTLASAGAADSTIKVWD 246 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc------CceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence 987543111000000000000000000000000011111100 111234666777666 8888877 99999999
Q ss_pred cCCCCCccc--cc--eeecCc---cceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe--EEEEEcccccc---E-EEEE
Q 013881 256 FNVTTNCFE--PA--ASLKGH---SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSV---V-MSLL 320 (434)
Q Consensus 256 ~~~~~~~~~--~~--~~~~~h---~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~---v-~~l~ 320 (434)
++.....++ +. ..+..| ...+++|..+ |.+|++.+.|+.|++||+.+.. ++..+.++... + ..+.
T Consensus 247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS 326 (720)
T KOG0321|consen 247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS 326 (720)
T ss_pred ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence 997643321 11 222223 3345666665 6888888889999999998633 34444443221 2 3455
Q ss_pred EcCCEEEEEeCCCcEEEEEcCCCCceEE-EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 321 CWDQFLLSCSLDKTIKVWFATDSGNLEV-TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 321 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
+++.+|++|+.|...++|.+...+.... +..|. ..+..++|.|..... +++++.|..++||++..+
T Consensus 327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~--v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTP--VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCceEeccCCCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCC--ceeeccCcceEEEeccCc
Confidence 5689999999999999999987764433 33333 458888888766543 677799999999999654
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-19 Score=153.22 Aligned_cols=238 Identities=13% Similarity=0.189 Sum_probs=183.4
Q ss_pred ccccccccceEEEEE--eCCcEEEecCCCeEEEEeCCC---CceEEEEecCccccEEEEEcc-C-CCCEEEEEECCCcEE
Q 013881 103 NNRAVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGD---GFKLLTQLEGHQKVVSGITLP-S-GSDKLYSGSKDETVR 175 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~---~~~~~~~l~~h~~~V~~l~~s-~-~~~~l~s~s~dg~v~ 175 (434)
.....|++-|.|+.| .....++++.|++|+|||..+ ...+....+.|.+.|..|.|. | -|+.+|+++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 345678888999988 566789999999999999653 257788889999999999994 3 689999999999999
Q ss_pred EEECCCC-------c--eEEE-EecCCceEEEEe----CCCEEEE-EcCCcEEEEECCCCceE--------------Eec
Q 013881 176 VWDCASG-------Q--CAGV-INLGGEVGCMIS----EGPWIFI-GVTNFVKAWNTQTNTDL--------------SLS 226 (434)
Q Consensus 176 iwd~~~~-------~--~~~~-~~~~~~~~~~~~----~~~~l~~-~~~~~i~~w~~~~~~~~--------------~~~ 226 (434)
||.=... + ...+ ......+..+.+ -+-.+++ +.||.+++|+.-....+ ...
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9975211 1 1111 122344555544 3444444 56999999986543321 122
Q ss_pred CCCCcEEEEEEeCC-----EEEEEeCC-----CcEEEEEcCCCCCccccceeecCccceEEEEEECCC------EEEEec
Q 013881 227 GPVGQVYAMAVGND-----LLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN------KLYSGS 290 (434)
Q Consensus 227 ~~~~~v~~l~~~~~-----~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~s 290 (434)
.+.....|+.|++. +|++|+.+ +.++||........+..+..+.+|+.+|..++|.++ .|++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 46678889999876 77777776 589999998887667778889999999999999754 589999
Q ss_pred CCCcEEEEeCCC--------------------CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 013881 291 MDNSIRVWNLET--------------------LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 291 ~dg~i~vwd~~~--------------------~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 341 (434)
.|| |+||.++. -+.+..+..|++.|..+.|+ |..|.+.+.||.||+|...
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999 99999873 13456678899999999999 8999999999999999654
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.1e-20 Score=156.49 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=159.8
Q ss_pred cCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEe
Q 013881 147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (434)
Q Consensus 147 ~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~ 225 (434)
..|.+.|+++...+ .++++++|+.||.|.+||++.......-..-....|+. .....
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v----------------------~~~h~ 97 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV----------------------AKQHE 97 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec----------------------cccCC
Confidence 45889999999977 78999999999999999997643111000000000000 01124
Q ss_pred cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-----CCEEEEecCCCcEEE
Q 013881 226 SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-----ANKLYSGSMDNSIRV 297 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~dg~i~v 297 (434)
.+|...|.++.|-|- ++.+++.|.++++||.++.+ ....+. -...|.+-+++ .-++++|..|-.|++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ----~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ----EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL 172 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccce----eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence 578889999999876 99999999999999998863 222222 23345444443 347889999999999
Q ss_pred EeCCCCeEEEEEccccccEEEEEEcCC---EEEEEeCCCcEEEEEcCCC-CceEEEeeec------------CCccEEEE
Q 013881 298 WNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVWFATDS-GNLEVTYTHN------------EEHGVLAL 361 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~------------~~~~~~~~ 361 (434)
-|+.+|..-+.+.+|...|.++.|++. .|++|+.||.|++||++.. ++...+..+. +...+..+
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 999999999999999999999999943 7899999999999999865 4444443332 22457778
Q ss_pred EeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
+|..++. ++++.+.|..+++|+..+++.
T Consensus 253 a~tSd~~---~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 253 AWTSDAR---YLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eecccch---hhhhccCccceEEeecccCcc
Confidence 8876554 889999999999999988754
No 145
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=1.3e-20 Score=169.90 Aligned_cols=205 Identities=17% Similarity=0.267 Sum_probs=156.2
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcc---ccceeecCccceEEEEEE--CCCEEEEecCCC
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF---EPAASLKGHSLAVVSLVV--GANKLYSGSMDN 293 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg 293 (434)
.++.+.+|...|.++++.+. .|++|+.|-.|++||+......+ +.+.....| .|.++.| .++.|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEEEEecCc
Confidence 34568889999999999998 99999999999999998765443 333333445 4555555 478888888889
Q ss_pred cEEEEeCCCCeEEEE------------EccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeec----C
Q 013881 294 SIRVWNLETLQCIQT------------LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN----E 354 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~------------~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~ 354 (434)
..+|+|-.-.+.+.. -++|...+++.+|+ .+.+++++.||+++|||+........+..+. .
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999554433322 24788899999998 4689999999999999998765444333332 2
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc----cc--cCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI----FA--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
...+..++|.+++. +||+|+.||+|.+|+..+......+ .| ...|++|.||+|| +|++-+.|+++++||+
T Consensus 317 Rv~~tsC~~nrdg~---~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGK---LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred ccCceeeecCCCcc---hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 24566777766655 8999999999999998654333222 23 3489999999999 9999999999999999
Q ss_pred cCC
Q 013881 428 CNG 430 (434)
Q Consensus 428 ~~g 430 (434)
.+-
T Consensus 394 rq~ 396 (641)
T KOG0772|consen 394 RQF 396 (641)
T ss_pred ccc
Confidence 864
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=7.6e-21 Score=170.78 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=195.0
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+.+| .|.+-|.++.+|...++++||+..+ |+|||+...... .++. .
T Consensus 413 ~~tL-~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k------~Pvs--------------------------q 458 (705)
T KOG0639|consen 413 INTL-AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNK------SPVS--------------------------Q 458 (705)
T ss_pred hhhh-ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCC------Cccc--------------------------c
Confidence 3444 4888999999999999999999754 999998654110 0000 0
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEE
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 298 (434)
+........|.++...++ .|++|++-.++.|||+...+. .....+......+.+++.+ .+..+++..||.|.||
T Consensus 459 Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--rikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 459 LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc--chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 112234566778888888 899999999999999998754 2233333333444555554 5688999999999999
Q ss_pred eCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
|+.+...++.|++|...+.||..+ |..|.+|+-|.+||-||+++...+. .|.-...|.++.++|..+ +|++|
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq---qhdF~SQIfSLg~cP~~d---WlavG 610 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ---QHDFSSQIFSLGYCPTGD---WLAVG 610 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh---hhhhhhhheecccCCCcc---ceeee
Confidence 999999999999999999999998 8899999999999999999886554 344446789998888777 99999
Q ss_pred eCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 377 CNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
-..+.+.|......+.-..-.|+..|.++.|.+-| .+++.+.|..+..|...-|.
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 99999999988776666666678999999999999 99999999999999876554
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.9e-22 Score=185.65 Aligned_cols=230 Identities=20% Similarity=0.351 Sum_probs=194.1
Q ss_pred ccccccccceEEEEE--eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
+....|...+.|+.. +...+++|+.|..+-+|.+... ..+..|.+|..+|.+|.|+++..+|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 455677888888886 3345777889999999999876 6667799999999999999999999999999999999999
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~ 258 (434)
+.+.+++ +.+|...+.++.|+|- +.+.|+.|+.+++||.+.
T Consensus 101 eAk~vrt-------------------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 101 EAKIVRT-------------------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred hhhhhhh-------------------------------------hhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 8876654 7789999999999998 788999999999999997
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCc
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT 334 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~ 334 (434)
. -+...+.+|...|..+.+. |.++++++.|.+++|||+..|+.+..|..|+..+.++.++ .-++++|+.|++
T Consensus 144 ~----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 144 K----GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred c----CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 6 6788888999988888875 5689999999999999999999999999999999999988 347888999999
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
+++||+++.+.+...... ...+.+..|.++.. .+++|..+
T Consensus 220 v~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~---~~~~G~q~ 259 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPE--TDGVRSLAFNPDGK---IVLSGEQI 259 (825)
T ss_pred eeeeccceeEEeeccCCc--cCCceeeeecCCce---eeecCchh
Confidence 999999876544433333 35688888877655 56666543
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.4e-19 Score=165.53 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=143.4
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC---ccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeC
Q 013881 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 230 ~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 300 (434)
..|+.+.|+|- .|++++.||.|++|.+..+.. ...+...+..|...|+++.|++ +.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 45777788775 899999999999999976543 2356677889999999999985 78999999999999999
Q ss_pred CCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
++.+....+.+|++.|..++|+ |+.+++.+.||+|++|+.++.+.............-..+.|.-++ +++++.+.
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg---r~viv~Gf 784 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG---RIVIVVGF 784 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC---cEEEEecc
Confidence 9999999999999999999999 889999999999999998876544332222221222233333232 36666554
Q ss_pred C----CeEEEEeCCCCc--ccccccc--cCcEEEEEecCCc--EEEEeCCCCCEEEEEccCC
Q 013881 379 D----NSVRFYDLPSFA--ERGKIFA--KQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 379 d----g~i~iwd~~~~~--~~~~~~~--~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g 430 (434)
| ..|.+||..+.. .+..... ...+.--.+.+|. +|++|-.|..|.+|.+...
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 4 467888876533 2211111 1111111344555 8899999999999998654
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.1e-20 Score=164.04 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=199.4
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCcc--ccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEE
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~--~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (434)
++.+++....+++||+... +....+..|+ -.|.++.|+.... .+++.+.|..|++|.-... ..++.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~-~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp-------- 72 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDL-ETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVP-------- 72 (673)
T ss_pred ceeeeccCCceEEeecccc-cCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccc--------
Confidence 4667788889999999864 4444444333 3489999986654 2334456888888874322 10000
Q ss_pred EeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEcCCCCCccccceeecCccce
Q 013881 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (434)
Q Consensus 198 ~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 275 (434)
+. ....+. .-.|++... -++++|+..+.|+|||++.. ...+.+++|...
T Consensus 73 ----------------~~-------~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~st 123 (673)
T KOG4378|consen 73 ----------------RV-------RKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQST 123 (673)
T ss_pred ----------------ee-------eccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcce
Confidence 00 001111 122333222 28999999999999999965 677888999999
Q ss_pred EEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcccccc-EEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEE
Q 013881 276 VVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV-VMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVT 349 (434)
Q Consensus 276 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~ 349 (434)
|+++.++ ..+|++++..|.|.|..+.++.....|....+. |.-+.++ ..+|.+++.+|.|.+||+.........
T Consensus 124 vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 124 VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred eEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 9999997 459999999999999999999888888765444 4467776 347888999999999999766554433
Q ss_pred eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.. .+..+...+||+|..+ .+|++.+.|..|.+||.........+....+...++|+++| +|++|...|.|..||++
T Consensus 204 ~~-~HsAP~~gicfspsne--~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 204 SE-AHSAPCRGICFSPSNE--ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred hh-hccCCcCcceecCCcc--ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 32 3345678889987654 58999999999999999988888888889999999999999 99999999999999998
Q ss_pred CCc
Q 013881 429 NGP 431 (434)
Q Consensus 429 ~g~ 431 (434)
.-+
T Consensus 281 ~~k 283 (673)
T KOG4378|consen 281 STK 283 (673)
T ss_pred cCC
Confidence 643
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=4.4e-20 Score=153.30 Aligned_cols=275 Identities=15% Similarity=0.188 Sum_probs=188.4
Q ss_pred ccccceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 107 VIKTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 107 ~~~~~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
.|...++|+.| .++.++.|..-|.|++|++.+. +.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+..
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 56678899988 5667888999999999999987 7777777 67889999998887 6789999999999999987654
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCC-c-----------EE
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG-A-----------IL 252 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg-~-----------i~ 252 (434)
+..-. -.+.++-|.+.-+...+... . +.
T Consensus 90 i~i~S----------------------------------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 90 ISIHS----------------------------------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred EEEee----------------------------------------eeccccccccceeccCCCcchhheecCCcccchhh
Confidence 43211 11111222111111111110 0 11
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEEC---CC--EEEEecCCCcEEEEeCCCCeEE----------EEEccccccEE
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG---AN--KLYSGSMDNSIRVWNLETLQCI----------QTLTEHTSVVM 317 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~--~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~v~ 317 (434)
+-|.....+..-....-.+..+.+++..+. +. ++++|.++|.+.+||+.++..+ .....|..+|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 111111110000001112334566777653 23 5788999999999999997433 34456899999
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCC-ce--EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 318 SLLCW--DQFLLSCSLDKTIKVWFATDSG-NL--EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 318 ~l~~~--~~~l~s~s~dg~i~vwd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
++.+. -+.=++|+.+..+..|++.... .+ ....... ...+..+..-|+.+ ++++++.|+.|+||..++..+
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRpD~K---IlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRPDGK---ILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCccceEEccCCc---EEeecccCCcEEEEEeccCCc
Confidence 99988 3455778888899999887542 11 1112211 23455666655544 999999999999999999999
Q ss_pred ccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 393 RGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 393 ~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
+..+. |...|.+++|+|+. .+|+++.|++|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98875 68899999999997 9999999999999997
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.7e-19 Score=169.59 Aligned_cols=227 Identities=20% Similarity=0.329 Sum_probs=183.1
Q ss_pred EEEeCCCEEEE-EcCCcEEEEECCCC-ceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCc
Q 013881 196 CMISEGPWIFI-GVTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGH 272 (434)
Q Consensus 196 ~~~~~~~~l~~-~~~~~i~~w~~~~~-~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 272 (434)
++.+++.++++ +.++.|++|+.... +.. ++..+...|.+++.....|++|+.+++|.+|.+..+. .-..+...
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~----~~~iL~Rf 95 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE----EDTILARF 95 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC----ccceeeee
Confidence 44456666665 56999999998776 333 3344888999999998899999999999999998873 33344445
Q ss_pred cceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEE
Q 013881 273 SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 273 ~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~ 348 (434)
+-++..++++ |++++.|+.|-.|++-++.+......+.+|.++|.++.++ +++|++.+-||.|++||+.++.....
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 5677777775 5699999999999999999999999999999999999999 67999999999999999988765444
Q ss_pred EeeecC------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCc-EEEEeCC
Q 013881 349 TYTHNE------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 349 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg-~l~s~~~ 418 (434)
+..... ...+..++|+|.+. .++..+.|+.|++|+..+++....+.. ...+..++|+|.| +||+++.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g---~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGG---TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cccCCccccccccceeeeeeecCCCC---eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 333211 23466778887644 577777899999999999988877653 4459999999999 9999999
Q ss_pred CCCEEEEEccC
Q 013881 419 TGQVRVWQWCN 429 (434)
Q Consensus 419 dg~i~iwd~~~ 429 (434)
||.|.|||+++
T Consensus 253 ~g~I~vWnv~t 263 (933)
T KOG1274|consen 253 DGQILVWNVDT 263 (933)
T ss_pred CCcEEEEeccc
Confidence 99999999984
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.9e-20 Score=182.60 Aligned_cols=239 Identities=18% Similarity=0.269 Sum_probs=189.2
Q ss_pred cceEEEEEeC------CcEEEecCCCeEEEEeCCC-----CceEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEE
Q 013881 110 TDILCRNWVQ------GNCMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVW 177 (434)
Q Consensus 110 ~~i~c~~~~~------~~~~~g~~d~~i~vwd~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iw 177 (434)
..-++++|.. +-++.|..||.|.+||... ....+.++..|++.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 3567788821 2255566999999999874 2456778889999999999999665 99999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
|+..-+.-... .-......|.+++|+.. +|++++.+|.+.||
T Consensus 145 Dlnn~~tP~~~-----------------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 145 DLNKPETPFTP-----------------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred ccCCcCCCCCC-----------------------------------CCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 99874322111 01234678999999987 89999999999999
Q ss_pred EcCCCCCccccceeecCccc--eEEEEEECCC---EEEEecCCC---cEEEEeCCC-CeEEEEEccccccEEEEEEc---
Q 013881 255 KFNVTTNCFEPAASLKGHSL--AVVSLVVGAN---KLYSGSMDN---SIRVWNLET-LQCIQTLTEHTSVVMSLLCW--- 322 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~---~l~s~s~dg---~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~--- 322 (434)
|++.. +++..+..+.. .+..+.|+++ .+++++.|. .|.+||+|. ..+++.+++|+..|.++.|.
T Consensus 190 Dlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 190 DLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred cccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 99987 55666655544 4678899865 577666653 699999986 45678889999999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
..+|++++.|+.|.+|+.++++.+..+.. ...++..+.|.|..++ ++++++-||.|.||.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~--~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPS--VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcc--hhhhheeccceeeeeeecCC
Confidence 47999999999999999999877666655 4467999999987664 79999999999999997654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.7e-20 Score=181.08 Aligned_cols=269 Identities=20% Similarity=0.262 Sum_probs=203.2
Q ss_pred cCCCeEEEEeCC--CC---ceEEEEecCccccEEEEEccCCCCE----EEEEECCCcEEEEECCCCceEEEEecCCceEE
Q 013881 126 EKCKFLHSWTVG--DG---FKLLTQLEGHQKVVSGITLPSGSDK----LYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (434)
Q Consensus 126 ~~d~~i~vwd~~--~~---~~~~~~l~~h~~~V~~l~~s~~~~~----l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (434)
+.+.++.||.+. +. .+++..+. -...-+.++|.+.+.. ||.|..||.|.+||...-..-
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~----------- 103 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN----------- 103 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccC-----------
Confidence 345566666654 22 13333333 3457789999887665 899999999999998652000
Q ss_pred EEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCcc
Q 013881 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS 273 (434)
Q Consensus 197 ~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~ 273 (434)
...........|.+.|..+.|++. +|++|+.||.|.|||+......+.+- -....
T Consensus 104 --------------------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~~ 161 (1049)
T KOG0307|consen 104 --------------------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAPP 161 (1049)
T ss_pred --------------------cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCCc
Confidence 000011246789999999999877 99999999999999998864322221 22356
Q ss_pred ceEEEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEccccc--cEEEEEEcC---CEEEEEeCCC---cEEEEEcCC
Q 013881 274 LAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS--VVMSLLCWD---QFLLSCSLDK---TIKVWFATD 342 (434)
Q Consensus 274 ~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~~~---~~l~s~s~dg---~i~vwd~~~ 342 (434)
..|.+++|+.+ .|++++.+|.+.|||++..+.+-.+..+.. .+..++|++ ..|++++.|. .|.+||++.
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 78999999853 699999999999999999999888877765 467888884 4677777653 699999987
Q ss_pred CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc--EEEEeCCC
Q 013881 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG--LFFTGDGT 419 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg--~l~s~~~d 419 (434)
.......... +..+++++.|.+.++ .+|++++.|+.|.+|+.++++.+..+.. .+.+..+.|+|.. .+++++-|
T Consensus 242 assP~k~~~~-H~~GilslsWc~~D~--~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 242 ASSPLKILEG-HQRGILSLSWCPQDP--RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cCCchhhhcc-cccceeeeccCCCCc--hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 7655444432 335799999986543 4899999999999999999999999876 6789999999988 88999999
Q ss_pred CCEEEEEccCCc
Q 013881 420 GQVRVWQWCNGP 431 (434)
Q Consensus 420 g~i~iwd~~~g~ 431 (434)
|.|.|+.+....
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999998654
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.1e-19 Score=151.39 Aligned_cols=244 Identities=17% Similarity=0.210 Sum_probs=185.5
Q ss_pred ccccceEEEEEeCC------cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEEC
Q 013881 107 VIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDC 179 (434)
Q Consensus 107 ~~~~~i~c~~~~~~------~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~ 179 (434)
.|+...+-++|.-+ -+++|+.-|.|+|.|+.++ ++...+.+|...|+.|.|.|+. ++|+++|.|.+||+|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 46667777778322 3666778899999999998 9999999999999999999964 78999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
++..++..+.. ..+|.+.|.++.|+.+ .+++++.|.+|++|++.
T Consensus 166 ~~~~Cv~VfGG----------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 166 QTDVCVAVFGG----------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cCCeEEEEecc----------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 99999876642 6789999999999988 99999999999999998
Q ss_pred CCCCc--ccc----------------------ceeecCccceEEEEEECCCEEEEecCCCcEEEEeCC-CCe--------
Q 013881 258 VTTNC--FEP----------------------AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE-TLQ-------- 304 (434)
Q Consensus 258 ~~~~~--~~~----------------------~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~-~~~-------- 304 (434)
...-. .+. ..+-.-|...|-|+.|-++++++-+-++.|..|... -.+
T Consensus 212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~ 291 (385)
T KOG1034|consen 212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPP 291 (385)
T ss_pred hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCC
Confidence 43110 000 012234777788888889999999999999999872 122
Q ss_pred -----EEEEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCce-EE-EeeecCCccEEEEEeccCCCCCcEE
Q 013881 305 -----CIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL-EV-TYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 305 -----~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
.+.++.-....|.-+.|. .+.|+.|...|.|.+||++..... .. +........+...+++.++. +|
T Consensus 292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---~l 368 (385)
T KOG1034|consen 292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---IL 368 (385)
T ss_pred ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc---EE
Confidence 223344444555555544 689999999999999999877653 22 22223334566677765544 88
Q ss_pred EEEeCCCeEEEEeCC
Q 013881 374 LCSCNDNSVRFYDLP 388 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~ 388 (434)
+..+.|++|.-||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 889999999999864
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=5.2e-19 Score=154.71 Aligned_cols=228 Identities=19% Similarity=0.284 Sum_probs=171.0
Q ss_pred EecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
.+.||+++|..++|+| +...|||||.|.+|.||++..+-....+. ....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------epvv 125 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------EPVV 125 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------cceE
Confidence 3458999999999999 56789999999999999998775543322 1234
Q ss_pred EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEE
Q 013881 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 298 (434)
.+.+|...|-.+.|+|. .|++++.|.+|.+|++.++ +.+..+. |...|.+++|+ |.+|++.+.|..||||
T Consensus 126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg----eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG----EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC----ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 68899999999999987 8999999999999999998 4455555 99999999985 7899999999999999
Q ss_pred eCCCCeEEEEEccccccE--EEEEEc-CCEEEEEe----CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 299 NLETLQCIQTLTEHTSVV--MSLLCW-DQFLLSCS----LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v--~~l~~~-~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
|.++++.+..-.+|.+.- ..+-.. +. +++.+ .+.++-+||..+......+........++--.+.++. +-
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt--~i 277 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT--SI 277 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC--CE
Confidence 999999999988887643 333333 45 44443 3789999998877666666666555555554444333 33
Q ss_pred EEEEEeCCCeEEEEeCCCCccc----ccccccCcEEEEEecCC
Q 013881 372 VLLCSCNDNSVRFYDLPSFAER----GKIFAKQEIRAIQLGPG 410 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~v~~~~~spd 410 (434)
+.++|-.|+.|+-|++....+. .++....+-+.+.|-|.
T Consensus 278 vYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 4556778999999999775432 23333455555666554
No 156
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-18 Score=139.71 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=179.8
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG 230 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~ 230 (434)
..|.+-+++|.+++|+.|..+|+|.+..+.+...-.... ......+..++|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~---------------------------~gk~~iv~eqahdg 63 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP---------------------------PGKLKIVPEQAHDG 63 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC---------------------------CCCcceeeccccCC
Confidence 456677899999999999999999999986532111100 00111235688999
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc--cccceee--cCc-----cceEEEEEEC--CCEEEEecCCCcEEEEe
Q 013881 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--FEPAASL--KGH-----SLAVVSLVVG--ANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 231 ~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~--~~h-----~~~v~~l~~~--~~~l~s~s~dg~i~vwd 299 (434)
+|+.++|..++|++|+. |.|+-|..+..... .++.... .-| -..|.++..+ .+.++.++.|+.++.||
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 99999999888888776 99999987654321 0111111 111 2345666665 45677777999999999
Q ss_pred CCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC--------ccEEEEEeccCCCC
Q 013881 300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE--------HGVLALCGMPDSEG 369 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 369 (434)
+++|+..+++++|+..|.++.-. ...+++|++||++|+||+++.+.+..+.....+ ..+-+++. +
T Consensus 143 lE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-----~ 217 (325)
T KOG0649|consen 143 LEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-----N 217 (325)
T ss_pred ecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-----c
Confidence 99999999999999999999884 679999999999999999999887776554332 23444542 2
Q ss_pred CcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
+.++++|+ ...+.+|++++.+....+.-...+..+.|-.| .+++++....|.-|.+.
T Consensus 218 edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeec
Confidence 22788775 46799999999999999888999999999876 77777777788888764
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=5.8e-19 Score=162.97 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=97.2
Q ss_pred eEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEE------EecC-CceEEEEe---CCCEEEEEcC
Q 013881 141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGV------INLG-GEVGCMIS---EGPWIFIGVT 209 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~------~~~~-~~~~~~~~---~~~~l~~~~~ 209 (434)
+.+..+.+|.+.|+++.|+| +..+|||+|.|..|+||.+..+..... +... -.+.++-+ .+.+++++..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 56677889999999999999 567899999999999999985522111 1111 12344433 5778899999
Q ss_pred CcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 210 NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 210 ~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+.+++||+.+++.. .+.+|...|.++.|+.| +|++++.|..|+|||.+...
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCC
Confidence 99999999998876 78999999999999999 99999999999999987653
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=161.54 Aligned_cols=265 Identities=15% Similarity=0.182 Sum_probs=197.3
Q ss_pred ceEEEEEeC-CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 111 DILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 111 ~i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
-|.-++|.+ +..+....+..+.+||+.+| .+++++++|++.|.+++|+.||+.+|||+.|..|.+|+-.-.-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L---- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL---- 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee----
Confidence 677788855 45566667788999999999 999999999999999999999999999999999999986432221
Q ss_pred cCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce
Q 013881 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (434)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~ 267 (434)
...|...|.|+.|+|- .|++++- ...-+|...... +.
T Consensus 89 -----------------------------------kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-----V~ 127 (1081)
T KOG1538|consen 89 -----------------------------------KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-----VS 127 (1081)
T ss_pred -----------------------------------eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-----HH
Confidence 3468999999999997 6666554 346678765431 11
Q ss_pred eecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE--EEEEccccccEEEEEEcC-------CEEEEEeCCCcEE
Q 013881 268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCWD-------QFLLSCSLDKTIK 336 (434)
Q Consensus 268 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~~-------~~l~s~s~dg~i~ 336 (434)
. ......+.+.+|. |.+|+.|-.+|+|.+-+-...+. +..-.+..++|.+++|++ +.+++.....++.
T Consensus 128 K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 128 K-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred h-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 1 1234567788884 77999999999999987433222 233335788999999982 5888899999999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~ 414 (434)
+|.+. ++.+....... ....++.+.++++ +++.|+.|+.+++|.-+ +-.+.++.. ...|+.++..|++ .++
T Consensus 207 Fy~Ls-G~~Igk~r~L~--FdP~CisYf~NGE---y~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 207 FYQLS-GKQIGKDRALN--FDPCCISYFTNGE---YILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred EEEec-ceeecccccCC--CCchhheeccCCc---EEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEE
Confidence 99874 32222222222 2234566665555 99999999999999654 455555543 6789999999999 999
Q ss_pred EeCCCCCEEEEEccC
Q 013881 415 TGDGTGQVRVWQWCN 429 (434)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (434)
.|+.||+|..|++..
T Consensus 280 ~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEccCeeehhhhHH
Confidence 999999999998754
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.5e-18 Score=167.23 Aligned_cols=276 Identities=19% Similarity=0.273 Sum_probs=189.6
Q ss_pred CcEEEecCCCeEEEEeCCCCceEEEEecCc---cccEEEEEccC--CCCEEEEEECCCcEEEEECCCCc--eEEEEecCC
Q 013881 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGH---QKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQ--CAGVINLGG 192 (434)
Q Consensus 120 ~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h---~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~ 192 (434)
..++++.....|+|||.+.+ +.+..|..+ ...|+.|.+-. |..+|++++.||.||||+--... ....
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL----- 1150 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL----- 1150 (1387)
T ss_pred ceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee-----
Confidence 34555555679999999998 777777654 36799999843 66789999999999999743221 1100
Q ss_pred ceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee-
Q 013881 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL- 269 (434)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~- 269 (434)
|.-|..-++.. .+..+.=.-+.|... .|++++.-..|+|||..... ....+
T Consensus 1151 -------------------VTaw~~Ls~~~---~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~----~~~diP 1204 (1387)
T KOG1517|consen 1151 -------------------VTAWSSLSDQL---PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ----VVADIP 1204 (1387)
T ss_pred -------------------EEeeccccccC---ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce----eEeecc
Confidence 11111111110 111111123445444 77777778999999998763 23332
Q ss_pred cCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCe---EEEEEcccccc--EEEEEEc--C-CEEEEEeCCCcEEEE
Q 013881 270 KGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQ---CIQTLTEHTSV--VMSLLCW--D-QFLLSCSLDKTIKVW 338 (434)
Q Consensus 270 ~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~--v~~l~~~--~-~~l~s~s~dg~i~vw 338 (434)
.+....|++++.+ ++.+++|..||.|++||.+... .+...+.|+.. |..+.+. | ..|++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 3345567777764 7899999999999999998643 46777888887 8888887 2 369999999999999
Q ss_pred EcCCCCceE--EEeeecC-CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--------ccCcEEEEEe
Q 013881 339 FATDSGNLE--VTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--------AKQEIRAIQL 407 (434)
Q Consensus 339 d~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~ 407 (434)
|++...... ....+.. ....+++..+...+ ++++|+. +.|+||++...+ +..+. ....+.+++|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCC---eeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeee
Confidence 999752211 1111111 12367777776666 8999988 999999997533 32221 1556899999
Q ss_pred cCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 408 GPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+|-. ++|+|+.|.+|.||....+++
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCcCC
Confidence 9999 999999999999999887764
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=150.03 Aligned_cols=262 Identities=15% Similarity=0.165 Sum_probs=187.8
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC--CCCEEEEEECCCcEEEEECCCCceEEEEecC----Cce
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVINLG----GEV 194 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~ 194 (434)
.++++-..|.|++||..++ +.+..+++|...++.+.|.. ....+.+++.||+|++||++.......+... .+.
T Consensus 42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4677778999999999998 99999999999999999966 5678999999999999999988766555433 244
Q ss_pred EEEEe--CCCEEEEEc-----CCcEEEEECCCCce-E--EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC
Q 013881 195 GCMIS--EGPWIFIGV-----TNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 195 ~~~~~--~~~~l~~~~-----~~~i~~w~~~~~~~-~--~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.++.. ...+++++. +-.|.+||++..++ + -...|...|+++.|+|. +|++|+.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 55544 566777764 34899999998877 3 45679999999999887 999999999999999987632
Q ss_pred ccccceeecCccceEEEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEccc-------------cccEEEEEEc-CC
Q 013881 262 CFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEH-------------TSVVMSLLCW-DQ 324 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~l~~~-~~ 324 (434)
. ..+.....|...|..+.|.++ .|.+-+...+..+|+++.+.+...+... ..-|.+.... .+
T Consensus 201 e-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 E-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred h-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2 344445567888999999753 6999999999999999988765544322 1112222222 34
Q ss_pred EEEEEeC-CCcEEEEEcCC---CC---ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 325 FLLSCSL-DKTIKVWFATD---SG---NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 325 ~l~s~s~-dg~i~vwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
.++.++. -++..++-+.. +. .+..+.. .+..-+.++.|.... .++.+|++||.+.+|..+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~---~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKN---DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccc---ceeeccCCCceEEEEecC
Confidence 4444444 56666654432 11 1111222 122345556555333 389999999999999964
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=6.2e-20 Score=174.15 Aligned_cols=277 Identities=18% Similarity=0.290 Sum_probs=214.4
Q ss_pred ccccccceEEEEEe--CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~--~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
.-.|.+.|+|..|. .-.+++|+.|..++||..+++ .++..+.||.+.|+.++.+.+..+++++|.|..|++|.+.++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 45788899999994 446899999999999999998 999999999999999999999999999999999999999998
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
..+.. +.+|++.|++++|+|-. +.+.||++++||.+-....
T Consensus 265 ~pvsv-------------------------------------LrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~ 305 (1113)
T KOG0644|consen 265 APVSV-------------------------------------LRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRI 305 (1113)
T ss_pred chHHH-------------------------------------HhccccceeeeccCccc--cCCCCCceEeccccccccc
Confidence 76643 78999999999999965 7889999999999833211
Q ss_pred cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEE
Q 013881 263 FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKV 337 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~v 337 (434)
+.+...-......+.++.+. +..+++++.|+.-..|.+..... +...+.-+... ..+.+++-.+-.+.+
T Consensus 306 y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 306 YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeee
Confidence 11111111223445666664 56799999999999888754221 11111111111 356677777888999
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEE
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s 415 (434)
|++.++........+... +..+.++|..+ ++..+++.||...|||+-.+.++.... .+..+..-.||+|| .++.
T Consensus 380 wnl~~g~l~H~l~ghsd~--~yvLd~Hpfn~--ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHSDE--VYVLDVHPFNP--RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred eecccchhhhhhcccccc--eeeeeecCCCc--HhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence 999998887777777765 66667777655 467889999999999999887776544 47778888999999 9998
Q ss_pred eCCCCCEEEEEccCCc
Q 013881 416 GDGTGQVRVWQWCNGP 431 (434)
Q Consensus 416 ~~~dg~i~iwd~~~g~ 431 (434)
...-|.++|.....++
T Consensus 456 sd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCCCceEEeccCCCc
Confidence 9999999998776554
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=6.5e-17 Score=148.51 Aligned_cols=247 Identities=14% Similarity=0.107 Sum_probs=167.9
Q ss_pred eEEEEEeCCc--E-EEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-ECCCcEEEEECCCCceEEE
Q 013881 112 ILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 112 i~c~~~~~~~--~-~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~ 187 (434)
+.++.|+++. + ++++.++.|++||..++ +.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.+.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 4567886653 3 34668899999999987 77777765544 5678999999977655 5689999999988766544
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCC-cEEEEEcCCCCCccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTNCFE 264 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg-~i~vwd~~~~~~~~~ 264 (434)
+. +...+.+++|+++ .++++..++ .+.+||..+. +
T Consensus 111 ~~--------------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~ 148 (300)
T TIGR03866 111 IP--------------------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----E 148 (300)
T ss_pred ee--------------------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----e
Confidence 32 1123456788877 666666664 4667787765 2
Q ss_pred cceeecCccceEEEEEE--CCCEEE-EecCCCcEEEEeCCCCeEEEEEcccc-----c--cEEEEEEc--CCEEEE-EeC
Q 013881 265 PAASLKGHSLAVVSLVV--GANKLY-SGSMDNSIRVWNLETLQCIQTLTEHT-----S--VVMSLLCW--DQFLLS-CSL 331 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~-----~--~v~~l~~~--~~~l~s-~s~ 331 (434)
....... ......+.+ ++.+|+ ++..++.|++||+++++.+..+..+. . ....+.++ ++++++ .+.
T Consensus 149 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 149 IVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 2222211 122344555 466664 55569999999999998877665321 1 12345566 566444 455
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE-eCCCeEEEEeCCCCcccccccccCcEEEEEecC
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 409 (434)
++.|.+||+++.+...... . ...+..++|+|++. +|+++ ..++.|++||+.+++.+..+......+.++++|
T Consensus 228 ~~~i~v~d~~~~~~~~~~~-~--~~~~~~~~~~~~g~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDYLL-V--GQRVWQLAFTPDEK---YLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCeEEEEECCCCcEEEEEE-e--CCCcceEEECCCCC---EEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 7789999998765544332 2 23577888877655 66665 568999999999999988888777778888875
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.4e-15 Score=145.73 Aligned_cols=294 Identities=27% Similarity=0.450 Sum_probs=227.7
Q ss_pred cCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCceEEEEec-CCceEEEEe--CC
Q 013881 126 EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVINL-GGEVGCMIS--EG 201 (434)
Q Consensus 126 ~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~--~~ 201 (434)
..|+.+.+|+..........+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.. ...+.++.. .+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 348999999999833888999999999999999999999999986 99999999999888888776 344555543 44
Q ss_pred C-EEEE-EcCCcEEEEECCCCceEE--ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccce
Q 013881 202 P-WIFI-GVTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (434)
Q Consensus 202 ~-~l~~-~~~~~i~~w~~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 275 (434)
. +++. +.++.+.+||...+.... +..|.... ...|+++ .+++++.|+.+++|+...... ....+..|...
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~ 286 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSS 286 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCcc
Confidence 4 4444 568899999988766664 77777775 3367776 788999999999999987643 13333678889
Q ss_pred EEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEc--cccccEEEEEEcC--CEEEEE-eCCCcEEEEEcCCCCceEE
Q 013881 276 VVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCWD--QFLLSC-SLDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 276 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~ 348 (434)
+.++.+.+ ..+++++.|+.+.+||+.+........ .|...+..+.+.. ..++.+ ..|+.+.+|++.... .
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~ 363 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---P 363 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---e
Confidence 99998875 677778889999999999888777766 7887888888841 455555 678999999988776 1
Q ss_pred EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccccc-CcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAK-QEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
.........+..+.+.+ . . ..+..+..++.+.+|+............. ..+....+++++ .+++++.++.+++|+
T Consensus 364 ~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 364 LKTLEGHSNVLSVSFSP-D-G-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred eEEecCCceEEEEEECC-C-C-CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 12222212266676665 3 2 23444788999999999998887777666 899999999999 999999999999999
Q ss_pred ccC
Q 013881 427 WCN 429 (434)
Q Consensus 427 ~~~ 429 (434)
..+
T Consensus 441 ~~~ 443 (466)
T COG2319 441 LKT 443 (466)
T ss_pred ccC
Confidence 876
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=3e-17 Score=144.34 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=197.2
Q ss_pred cceEEEEEeC---CcEEEecCCCeEEEEeCCCC--------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 110 TDILCRNWVQ---GNCMYGEKCKFLHSWTVGDG--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 110 ~~i~c~~~~~---~~~~~g~~d~~i~vwd~~~~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
.++..+.|.. +.+++|+.|..|++|-+..+ .+.+..|..|..+|+++.|+|+|++||||+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4888888833 36788999999999988632 245677889999999999999999999999999999998
Q ss_pred CCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 179 CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
...-... .... ..-.....++ ....+.+|...|+.++|+++ ++++++.|..+++||+
T Consensus 94 ~~~~~~~---~~d~--e~~~~ke~w~----------------v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 94 QGDVRIF---DADT--EADLNKEKWV----------------VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred ecCcCCc---cccc--hhhhCccceE----------------EEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 7641110 0000 0000000000 01256789999999999999 9999999999999999
Q ss_pred CCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEc----------cccccEEE------
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLT----------EHTSVVMS------ 318 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~------ 318 (434)
..+ .....+.+|..-+..++|++ +++++-+.|...+.+.+...+.++... ...+.++.
T Consensus 153 ~~G----~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 153 HAG----QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred ccc----eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 998 77888999999999999984 688888889888888776544433221 11222222
Q ss_pred -------EEEc--CCEEEEEeC----CC-----cEEEEEcCCCCceEEEeeecCCccEEEEEeccC--------------
Q 013881 319 -------LLCW--DQFLLSCSL----DK-----TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD-------------- 366 (434)
Q Consensus 319 -------l~~~--~~~l~s~s~----dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 366 (434)
++|. |.+|++.+. .+ ..++|+-........... .......++.++|-
T Consensus 229 lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEecccccccccc
Confidence 2222 445554332 22 234443222111111000 01112223322221
Q ss_pred -CCCCcEEEEEeCCCeEEEEeCCCCccccccc--ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 367 -SEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 367 -~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
-+-+..++.++ .+.|+|||.++..++.... |-..|+.++|++|| .|+..+.||...+--++..++
T Consensus 308 ~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 308 VLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 11222455554 5689999999988877665 57889999999999 999999999988888776654
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.2e-18 Score=153.88 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=186.3
Q ss_pred eEEEEEeCCc-EEEec--CCCeEEEEeCCCC---ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 112 ILCRNWVQGN-CMYGE--KCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 112 i~c~~~~~~~-~~~g~--~d~~i~vwd~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
+..+.|.... +++++ .|+.|++|.-... ...+..+.+. .-.|++......|+++|+..+.|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 6777885554 55544 6789999976532 2334444443 3445555555689999999999999999854443
Q ss_pred EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcc
Q 013881 186 GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF 263 (434)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~ 263 (434)
+ .+.+|...|+++.++.. +|++++..|.|.+..+.++
T Consensus 115 r-------------------------------------~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---- 153 (673)
T KOG4378|consen 115 R-------------------------------------FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---- 153 (673)
T ss_pred h-------------------------------------hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC----
Confidence 3 26789999999999766 9999999999999999887
Q ss_pred ccceeecCc-cceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEE-ccccccEEEEEEc---CCEEEEEeCCCcE
Q 013881 264 EPAASLKGH-SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW---DQFLLSCSLDKTI 335 (434)
Q Consensus 264 ~~~~~~~~h-~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~s~s~dg~i 335 (434)
.....+... ...|.-+.++. .+|.+++.+|.|.+||+....++..+ +.|..+...++|+ +.+|++.+.|..|
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 334444433 34455777764 36889999999999999887776554 5699999999988 5689999999999
Q ss_pred EEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-c-cccCcEEEEEecCCc
Q 013881 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-I-FAKQEIRAIQLGPGG 411 (434)
Q Consensus 336 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~v~~~~~spdg 411 (434)
.+||++.......+. ...+...++|++.+. +|+.|...|.|..||++..+.... + .|...|++++|-|.-
T Consensus 234 ~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~---~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLT---YSHPLSTVAFSECGT---YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecccccccceee---ecCCcceeeecCCce---EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999998654433332 224577888876554 999999999999999987554333 3 257789999997764
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.1e-15 Score=144.67 Aligned_cols=322 Identities=25% Similarity=0.430 Sum_probs=232.0
Q ss_pred cccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccc-cEEEEEc-cCCCC-EEEEEEC-CCcEEEE
Q 013881 104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-VVSGITL-PSGSD-KLYSGSK-DETVRVW 177 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~-~V~~l~~-s~~~~-~l~s~s~-dg~v~iw 177 (434)
....|...+.+..+... .+..++.|+.+.+|+...+...+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45677889999999543 3555668999999999987437777777544 7888887 88887 5555455 9999999
Q ss_pred ECCC-CceEEEEecC-CceEEEE--eCCCEEEEEc--CCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEE-eC
Q 013881 178 DCAS-GQCAGVINLG-GEVGCMI--SEGPWIFIGV--TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG-TQ 247 (434)
Q Consensus 178 d~~~-~~~~~~~~~~-~~~~~~~--~~~~~l~~~~--~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g-~~ 247 (434)
+... ......+..+ ..+..+. +.+..++.+. ++.+++|+....... .+..|...|.+++|.++ .++++ +.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 6666655554 4444343 4555666654 899999999985554 67779999999999987 24444 99
Q ss_pred CCcEEEEEcCCCCCccccce-eecCccce-EEEEEECCCEEEEecCCCcEEEEeCCCCeE-EEEEccccccEEEEEEcC-
Q 013881 248 DGAILAWKFNVTTNCFEPAA-SLKGHSLA-VVSLVVGANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCWD- 323 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~-~~~~h~~~-v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~~- 323 (434)
|+.|.+||.... .... .+..|... +..+...+..+++++.|+.+++|+++.... +..+..|...+.++.+.+
T Consensus 220 d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 220 DGTIRLWDLSTG----KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCcEEEEECCCC----cEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC
Confidence 999999987744 4444 57777776 333444566888999999999999987664 555567889999998884
Q ss_pred -CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcE
Q 013881 324 -QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEI 402 (434)
Q Consensus 324 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v 402 (434)
..+++++.|+.+.+||..............+...+..+.+ . .....++..+..|+.+.+|++..............+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 373 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEEecCCceE
Confidence 7888889899999998887766555541122224677777 4 222223444368899999999987733333333338
Q ss_pred EEEEecCCc-EEEE-eCCCCCEEEEEccCCcc
Q 013881 403 RAIQLGPGG-LFFT-GDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 403 ~~~~~spdg-~l~s-~~~dg~i~iwd~~~g~~ 432 (434)
..+.+++ . .++. +..++.+.+|+......
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 8899988 6 4444 78999999999987654
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.6e-17 Score=152.65 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=198.3
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCC--EEEEEECCCcEEEEECC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCA 180 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~s~s~dg~v~iwd~~ 180 (434)
...|++.|.|+...+. -++.|+.||+|+||.+.++ .+++++. -.+.|.||+|+|.+. .||.+-... +.|-+..
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 3578889999987444 4777999999999999999 8888877 456999999999664 444444333 5555443
Q ss_pred CCceE--------------------------------------EEEecCCceEEEEe--CCCEEEEEc----CCcEEEEE
Q 013881 181 SGQCA--------------------------------------GVINLGGEVGCMIS--EGPWIFIGV----TNFVKAWN 216 (434)
Q Consensus 181 ~~~~~--------------------------------------~~~~~~~~~~~~~~--~~~~l~~~~----~~~i~~w~ 216 (434)
-|..+ ..+.+...+..+.+ .|.++++.. ...|.+.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 22111 12222333333433 677887743 24788888
Q ss_pred CCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC
Q 013881 217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM 291 (434)
Q Consensus 217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 291 (434)
+...... .+....+.|.++.|+|. +|++++. ..|++||+... ..+..+......|.+++.+ |+.|+.++.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 8776655 55667889999999998 6666665 57999999876 6677777777788888876 589999999
Q ss_pred CCcEEEEeCCC-CeEEEEEccccccEEEEEEcCC--EEEEEeCCCcEEEEE------cCCCCce---EEEeeecC--Ccc
Q 013881 292 DNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWF------ATDSGNL---EVTYTHNE--EHG 357 (434)
Q Consensus 292 dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~vwd------~~~~~~~---~~~~~~~~--~~~ 357 (434)
|+.+..||+.- .++.+++..|...+.++++++. +|++|+.||++.|+. +.....+ +.+.+|.. ...
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 99999999975 4678889999999999999964 799999999999983 3222222 23333322 245
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 358 VLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
++...|+|..+ +|++++.||+|++|
T Consensus 708 VLd~~wHP~qp---WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQP---WLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCc---eEEecCCCceEEee
Confidence 77888888766 99999999999998
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.4e-19 Score=160.45 Aligned_cols=255 Identities=18% Similarity=0.301 Sum_probs=181.0
Q ss_pred EEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
.++..|.+.|+.++|.+....|++++.||++++|+++....-.. .. -....
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~----~~-------------------------~epi~ 338 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE----KD-------------------------VEPIL 338 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccc----cc-------------------------eeeeE
Confidence 36778999999999999999999999999999999943110000 00 01123
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc------cccceeecCccceEEEEEEC--CCEEEEecCCC
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 293 (434)
++.+|.++|.|+++..+ .+++|+-||+|+.|++...... ......+.||...|..++++ .+.|++++.||
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence 68899999999999888 9999999999999977632211 13456678999999999997 45899999999
Q ss_pred cEEEEeCCCCeEEEEEccc--cccEEEEEEcCCE---EEEEeCCCcEEEEEcCCCCceEEEeeecCC-----ccEEEEEe
Q 013881 294 SIRVWNLETLQCIQTLTEH--TSVVMSLLCWDQF---LLSCSLDKTIKVWFATDSGNLEVTYTHNEE-----HGVLALCG 363 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~--~~~v~~l~~~~~~---l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~ 363 (434)
++++|+.....+ .++... .+.-.++.+-... +++...-+.-.++++.....+..+...... ..+..+..
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 999999877666 333322 2223445544322 222222233333333333333332221111 23444555
Q ss_pred ccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 364 MPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.|..+ +.+++..|+.|+++|..+++++.... |...++++++.|+| +|++++.|+.+++|++....
T Consensus 498 ~~~~~---~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 498 HPTAD---ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCCCC---eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 55444 89999999999999999999887754 68899999999999 99999999999999986544
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.3e-17 Score=141.01 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=191.9
Q ss_pred EEEEeCCc--EEEecCCCeEEEEeCCCC-----------ceEEEEecC-ccccEEEEEcc-------CCCCEEEEEECCC
Q 013881 114 CRNWVQGN--CMYGEKCKFLHSWTVGDG-----------FKLLTQLEG-HQKVVSGITLP-------SGSDKLYSGSKDE 172 (434)
Q Consensus 114 c~~~~~~~--~~~g~~d~~i~vwd~~~~-----------~~~~~~l~~-h~~~V~~l~~s-------~~~~~l~s~s~dg 172 (434)
-+.|+++. +++-+.|..+.+|++... +++...++- ....|...+|- |+..++++.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 36787764 566779999999998621 111112211 23567777773 6788999999999
Q ss_pred cEEEEECCCCceEEEEecCC--------ceEEEEeCCCEEEEEcCCcEEEEEC-CCCceE---E-----ecCCCCcEEEE
Q 013881 173 TVRVWDCASGQCAGVINLGG--------EVGCMISEGPWIFIGVTNFVKAWNT-QTNTDL---S-----LSGPVGQVYAM 235 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~i~~w~~-~~~~~~---~-----~~~~~~~v~~l 235 (434)
-|++||.-+|+....+..-. ...++.+++..|++|..+.|+++|+ +.+... . ..+..+-|.++
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999999887766422 2334456999999999999999999 444422 2 22346788999
Q ss_pred EEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC-CCcEEEEeCCC-CeEEEE
Q 013881 236 AVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DNSIRVWNLET-LQCIQT 308 (434)
Q Consensus 236 ~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~-~~~~~~ 308 (434)
+|+|. .++.|+....+-||.-... .++..+.+|.+.|+.+.|. |+.|++|+. |-.|..||++. ..++..
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 99987 8999999999999987776 7888889999999999994 788888875 78999999986 556777
Q ss_pred Eccccc-cEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 309 LTEHTS-VVMSLLCW----DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 309 ~~~~~~-~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
+..|.. .-..|.|+ +++|++|+.||.|++||+.+... +..+..+ ...+..+++.|.-+ ++++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mp---ilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMP---ILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccc---eeeeccCc
Confidence 777765 34455554 88999999999999999998554 3333333 34577888877755 77777644
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=3e-17 Score=157.03 Aligned_cols=264 Identities=18% Similarity=0.228 Sum_probs=188.9
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG 207 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (434)
+.+.+|++.....+...+. -...|+++.|+| +..+|+.|..+|.|.+||+..+...-
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------------- 279 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------------- 279 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------
Confidence 4799999997766666665 568999999998 66788889999999999998875421
Q ss_pred cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCcccc--ceeec------Cccce
Q 013881 208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEP--AASLK------GHSLA 275 (434)
Q Consensus 208 ~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~------~h~~~ 275 (434)
..........|..+++.+.|..+ -+++++.||.|..|+++.-....+. ..... .....
T Consensus 280 ----------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~ 349 (555)
T KOG1587|consen 280 ----------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVG 349 (555)
T ss_pred ----------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccc
Confidence 00111234568889999999766 5999999999999988764321110 00011 12335
Q ss_pred EEEEEEC---CCEEEEecCCCcEEEEe---CCCC-----eEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 013881 276 VVSLVVG---ANKLYSGSMDNSIRVWN---LETL-----QCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 276 v~~l~~~---~~~l~s~s~dg~i~vwd---~~~~-----~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~ 341 (434)
++++.|. ++.++.|+.+|.|.-=+ .+.. +.+..+..|.++|.++.++ ...+++++ |-+++||...
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~ 428 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED 428 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc
Confidence 6777774 67899999999998733 2222 2234566789999999988 45566665 9999999876
Q ss_pred -CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc--cccc-ccCcEEEEEecCCc-EEEEe
Q 013881 342 -DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER--GKIF-AKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~v~~~~~spdg-~l~s~ 416 (434)
....+..+.. ....+.+++|+|..+. +++++..||.|.|||+...... .... .....+.+.|++.| .|++|
T Consensus 429 ~~~~Pl~~~~~--~~~~v~~vaWSptrpa--vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 429 VIASPLLSLDS--SPDYVTDVAWSPTRPA--VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG 504 (555)
T ss_pred CCCCcchhhhh--ccceeeeeEEcCcCce--EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEe
Confidence 3333332222 2345999999998774 8899999999999999754332 2222 24556778889889 99999
Q ss_pred CCCCCEEEEEccC
Q 013881 417 DGTGQVRVWQWCN 429 (434)
Q Consensus 417 ~~dg~i~iwd~~~ 429 (434)
+..|++++|++..
T Consensus 505 d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 505 DANGTTHILKLSE 517 (555)
T ss_pred cCCCcEEEEEcCc
Confidence 9999999999964
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.5e-16 Score=130.96 Aligned_cols=265 Identities=15% Similarity=0.208 Sum_probs=184.7
Q ss_pred cEEEecCCCeEEEEeCCC---------CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC
Q 013881 121 NCMYGEKCKFLHSWTVGD---------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~---------~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
.+++|..+|.|.+..+.+ +...+-..++|.++|+.++|. ..+|++++. |.|+=|..........
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~---- 96 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLA---- 96 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhcc----
Confidence 366788999999998752 335566678999999999998 456777665 9999998876432100
Q ss_pred CceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee
Q 013881 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL 269 (434)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 269 (434)
.-.+|.+......- ......|+++...|. -++.++.|+.++-||++++ +....+
T Consensus 97 -------------------~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G----~i~r~~ 152 (325)
T KOG0649|consen 97 -------------------TKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG----RIQREY 152 (325)
T ss_pred -------------------chhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCC----EEEEEE
Confidence 11123222211110 112346778887766 6666669999999999999 788999
Q ss_pred cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc---------c-cccEEEEEEcCCEEEEEeCCCcEEE
Q 013881 270 KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE---------H-TSVVMSLLCWDQFLLSCSLDKTIKV 337 (434)
Q Consensus 270 ~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---------~-~~~v~~l~~~~~~l~s~s~dg~i~v 337 (434)
++|+.-|.++.-. ...+++|++||++|+||.+++++++.+.. | ...|.+++.+.++|++|+ ...+.+
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lsl 231 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSL 231 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeE
Confidence 9999999999883 45899999999999999999999988753 2 345788888899988776 568999
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc--EEE
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG--LFF 414 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg--~l~ 414 (434)
|.++..+....+.-.. .+.-+.|. .+ .+++++..+.|.-|.+.. .....+.. ....++..|+..- .|-
T Consensus 232 whLrsse~t~vfpipa---~v~~v~F~--~d---~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPA---RVHLVDFV--DD---CVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred EeccCCCceEEEeccc---ceeEeeee--cc---eEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEE
Confidence 9999888766554432 24444443 22 678888888999998764 33333332 3344555555444 455
Q ss_pred EeCCCCCEEEEE
Q 013881 415 TGDGTGQVRVWQ 426 (434)
Q Consensus 415 s~~~dg~i~iwd 426 (434)
.++....+.|+.
T Consensus 303 ~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 303 IAGFSNKLHILK 314 (325)
T ss_pred ecccceeeeeee
Confidence 566666777653
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=9.4e-16 Score=133.63 Aligned_cols=231 Identities=16% Similarity=0.197 Sum_probs=183.2
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE-EEEecCCceEEEEeCCCEEEE-EcC--CcEEEEECCCCceEEe
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-GVINLGGEVGCMISEGPWIFI-GVT--NFVKAWNTQTNTDLSL 225 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~--~~i~~w~~~~~~~~~~ 225 (434)
...+..+.|..+...|..|+.|| .++++.+..... .....+..+.-+.+...+++. +.+ +.+++++.+.+..+-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 45677778999999999999999 788888765432 222222334445566666654 333 3689999998888766
Q ss_pred cCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceee---cCccceEEEEEECCC--EEEE--ecCCCcEEEE
Q 013881 226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGAN--KLYS--GSMDNSIRVW 298 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~--~l~s--~s~dg~i~vw 298 (434)
......|.++.++.+.|++.-++. |+|||++.. +++.++ ..+...+.+++++.. +++- ....|.|.+|
T Consensus 84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDM----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EecCCceEEEEEccceEEEEEccc-EEEEecccc----eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 667789999999999877777665 999999987 444443 356667888888753 6653 2346899999
Q ss_pred eCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
|+.+-+.+..+..|.+.+.+++|+ |.+|++++..|+ |||+.+.+++.+..+........+.+++|+++.+ +|++
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~~ 235 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLAA 235 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEEE
Confidence 999999999999999999999998 889999999887 7999999999998888877778899999988877 9999
Q ss_pred EeCCCeEEEEeCCC
Q 013881 376 SCNDNSVRFYDLPS 389 (434)
Q Consensus 376 ~~~dg~i~iwd~~~ 389 (434)
.+..++|+||.++.
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999999999864
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.8e-17 Score=141.71 Aligned_cols=265 Identities=15% Similarity=0.122 Sum_probs=183.4
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECCCCc--------------eEEEEecCCceEEEE---------eCCCEEEE-Ec
Q 013881 153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQ--------------CAGVINLGGEVGCMI---------SEGPWIFI-GV 208 (434)
Q Consensus 153 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~~~---------~~~~~l~~-~~ 208 (434)
...+.|+|||.-|++-+.|..+.+|++...- ....+..+..+.... ++..++++ ..
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4457899999999999999999999985321 111112222222211 23344444 45
Q ss_pred CCcEEEEECCCCceE---EecCCCC---cEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCcccccee----ecCccceEE
Q 013881 209 TNFVKAWNTQTNTDL---SLSGPVG---QVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAAS----LKGHSLAVV 277 (434)
Q Consensus 209 ~~~i~~w~~~~~~~~---~~~~~~~---~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~ 277 (434)
+.-|++||.-+++.. ....|.. ...+++|++| .-+.++....|+++|+...........+ ..+..+-+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 789999999999876 2233443 3458999999 3344556689999999443222111111 123366678
Q ss_pred EEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCceE-EEe
Q 013881 278 SLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLE-VTY 350 (434)
Q Consensus 278 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~-~~~ 350 (434)
++++++ ..++.++....+-|+.-..+.+++.+.+|.+.|+.+.|. |+.|++|+. |-.|..||++..+.+. .+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 888875 479999999999999999999999999999999999998 788888886 7899999999765432 233
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-Ccccccc-cccCcEEEEEecCCc-EEEEeCCC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-FAERGKI-FAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
.+.. ..-..+.|.-++ .+++|++|+.||.|++||++. +.....+ .+...++.++++|-= ++++++..
T Consensus 292 rhv~-~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 292 RHVG-DTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhcc-CccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3332 112233333333 334999999999999999998 5544443 357889999999988 88887654
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.7e-17 Score=145.38 Aligned_cols=203 Identities=19% Similarity=0.311 Sum_probs=163.5
Q ss_pred EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc---cccceeecCccceEEEEEECC---CEEEEecCCCc
Q 013881 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNS 294 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~ 294 (434)
...+|.++|..+.|+|. .|++|++|.+|.||++..+... .+++..+.+|...|-.+.|++ +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999886 9999999999999998765332 467788999999999999985 68999999999
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcE
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
|.+||+.+++.+.++. |...|.++.|+ |.+|++.+.|+.|+|||.++++.+..-..|........+ |..++. +
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai-fl~~g~---i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI-FLASGK---I 230 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE-EeccCc---e
Confidence 9999999999999987 99999999998 899999999999999999999887777566554444433 333332 4
Q ss_pred EEEEe---CCCeEEEEeCCCCcccccc---cccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCc
Q 013881 373 LLCSC---NDNSVRFYDLPSFAERGKI---FAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 373 l~~~~---~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~ 431 (434)
+.+|. ++.++.+||....+....+ ...+.|.-=-|.+|. ..++|-.|+.|+.|.+.+..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55543 4788999998776544332 335566666678887 66778899999999998765
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.9e-17 Score=139.38 Aligned_cols=232 Identities=20% Similarity=0.261 Sum_probs=165.8
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCc-----------------------------------eEEEEe-
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF-----------------------------------KLLTQL- 146 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~-----------------------------------~~~~~l- 146 (434)
...|.+.|+|++|+.+ .+++.+.|+.|++|++.+=. ..+..+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 5678899999999655 47778899999999987410 000000
Q ss_pred ----------------------cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC---CceEEEEeCC
Q 013881 147 ----------------------EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGCMISEG 201 (434)
Q Consensus 147 ----------------------~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~ 201 (434)
+-|+-.|..+-....+++|+|++.|..|.||++. |+.+..+... .....+++++
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC
Confidence 1244455556566677899999999999999998 8888887654 3345667899
Q ss_pred CEEEEEc-CCcEEEEECCCC---c------eEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc---cccc
Q 013881 202 PWIFIGV-TNFVKAWNTQTN---T------DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC---FEPA 266 (434)
Q Consensus 202 ~~l~~~~-~~~i~~w~~~~~---~------~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~---~~~~ 266 (434)
++++++. .-.|++|.+--+ + ...+.+|...|.+++|+++ .+++.+.||++++||.+-.-.. .+.+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 9998755 668999986322 1 2378999999999999999 9999999999999998643211 0111
Q ss_pred ee----ecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 267 AS----LKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 267 ~~----~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
.. +......-..+.. +++.|+. +....|+++..++++....++ .|...|.+++|+ |+++++++ |..+++
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence 11 1112222234444 4555554 445689999999988777665 489999999998 67888776 677777
Q ss_pred EE
Q 013881 338 WF 339 (434)
Q Consensus 338 wd 339 (434)
+.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 64
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.5e-17 Score=145.40 Aligned_cols=236 Identities=11% Similarity=0.119 Sum_probs=179.2
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCc--eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.+.|++|.|+|...+|++++.|++++||.+.... .++. +.-
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-------------------------------------~~l 255 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-------------------------------------IHL 255 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-------------------------------------eee
Confidence 4789999999999999999999999999986542 2222 223
Q ss_pred CCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccce---EEEEEECCCEEEEecCCCcEEEEeCC
Q 013881 228 PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA---VVSLVVGANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 228 ~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~l~s~s~dg~i~vwd~~ 301 (434)
...+|.+.+|.|+ .+++++....++.||+.+.+. ..+..+.++... -..++.++++|+..+..|.|.+....
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence 3557778888877 789999999999999987643 334444444422 24455568899999999999999999
Q ss_pred CCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 302 TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 302 ~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
+++.+.+++ -.+.|..+.|+ ++.|++++.+|.|.+||++....+..+.... ...-++++.+.++. +||+|+..
T Consensus 334 T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~---ylA~GS~~ 408 (514)
T KOG2055|consen 334 TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGS---YLATGSDS 408 (514)
T ss_pred hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCc---eEEeccCc
Confidence 999998886 46778888887 7789999999999999999886665554433 23455566555554 99999999
Q ss_pred CeEEEEeCCC------Ccccccccc-cCcEEEEEecCCc-EEEEeC--CCCCEEEEEccC
Q 013881 380 NSVRFYDLPS------FAERGKIFA-KQEIRAIQLGPGG-LFFTGD--GTGQVRVWQWCN 429 (434)
Q Consensus 380 g~i~iwd~~~------~~~~~~~~~-~~~v~~~~~spdg-~l~s~~--~dg~i~iwd~~~ 429 (434)
|.|.|||..+ .+++..+.. ...|++++|+||. .|+.++ .+..+++-.+.+
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 9999999765 233443332 6789999999999 777766 466777766554
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.9e-16 Score=147.53 Aligned_cols=184 Identities=23% Similarity=0.316 Sum_probs=136.7
Q ss_pred CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCC---CEEEEEECCCcEEEEECCCCceEEEEecCCceEE
Q 013881 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (434)
Q Consensus 120 ~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (434)
...+.+..+..|.||.+.++ ++++.+.+|..+++.+.+.|.. .++++++.||+|++||...+..++++....++..
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred CcEEEEeeCCEEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 35677778889999999999 9999999999999999997754 4788999999999999999998888765433222
Q ss_pred EEe-------------------------------------------------------------CCCEEEEEcCCcEEEE
Q 013881 197 MIS-------------------------------------------------------------EGPWIFIGVTNFVKAW 215 (434)
Q Consensus 197 ~~~-------------------------------------------------------------~~~~l~~~~~~~i~~w 215 (434)
+.. .+.+........+.+|
T Consensus 107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~ 186 (792)
T KOG1963|consen 107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY 186 (792)
T ss_pred EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence 211 0112222233455666
Q ss_pred ECCCCceE-----EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEE
Q 013881 216 NTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL 286 (434)
Q Consensus 216 ~~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l 286 (434)
+..+.... .-..|.-.+++.+++|. ++++|..||.|.+|.--.....-.....+.=|...|.+++|+ |.+|
T Consensus 187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceE
Confidence 66554322 12346666888999988 999999999999996443111113455667788999999985 7799
Q ss_pred EEecCCCcEEEEeCCCCe
Q 013881 287 YSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~~~ 304 (434)
++|+..+.+.+|.+.+++
T Consensus 267 lSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK 284 (792)
T ss_pred eecccceEEEEEeecCCC
Confidence 999999999999998865
No 178
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.1e-17 Score=136.95 Aligned_cols=244 Identities=15% Similarity=0.201 Sum_probs=168.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
++..++. |.. -.|+.|++-|.+||+|..||.|.|||+.+...-+
T Consensus 16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---------------------------------- 59 (405)
T KOG1273|consen 16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---------------------------------- 59 (405)
T ss_pred hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhh----------------------------------
Confidence 3444444 333 7899999999999999999999999998865332
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSI 295 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i 295 (434)
.+.+|..+|.+++|+++ .|++++.|..|.+||+..+. +...+. ..++|....|.+ +.+++.-.+..-
T Consensus 60 ---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp 131 (405)
T KOG1273|consen 60 ---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESP 131 (405)
T ss_pred ---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----ceeEEE-ccCccceeeeccccCCeEEEEEecCCc
Confidence 26789999999999999 99999999999999999884 344433 456788888864 344444444445
Q ss_pred EEEeCCCCeEEEEEcc-cccc---E-EEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 296 RVWNLETLQCIQTLTE-HTSV---V-MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~-~~~~---v-~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
.+-++...+.. .+.. ..+. + .+..|+ |+++++|...|.+.++|..+.+.+..+.... ...+..+.+...
T Consensus 132 ~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~-- 207 (405)
T KOG1273|consen 132 VVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRK-- 207 (405)
T ss_pred EEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEecc--
Confidence 55555442211 1111 1111 1 112344 8999999999999999998887665554433 123555555443
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCccc---------cccc---ccCcEEEEEecCCc-EEEEeC-CCCCEEEEEccCCccc
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAER---------GKIF---AKQEIRAIQLGPGG-LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~---~~~~v~~~~~spdg-~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
+..|+.-+.|..|+.|+++.-... .++. .+..=.+++|+.+| ++++++ .-..++||.-..|.++
T Consensus 208 -g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 208 -GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred -CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 348999999999999998731111 1111 23445678999999 776665 4567999999998876
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=148.03 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=212.1
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCce-----EEEEe--CCCEEEEEcCCcE
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-----GCMIS--EGPWIFIGVTNFV 212 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~~--~~~~l~~~~~~~i 212 (434)
+.+...|..|.+.|..|.|...|..|+||+.|..|.+||+..++....+..+... ..+.+ +..++..+.++.+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3566778999999999999999999999999999999999999888777654321 12222 3344555678988
Q ss_pred EEEECCCCce----EEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccc---eEEEEEEC
Q 013881 213 KAWNTQTNTD----LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL---AVVSLVVG 282 (434)
Q Consensus 213 ~~w~~~~~~~----~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~---~v~~l~~~ 282 (434)
++-.+..... ..+..|.+.|.-++..|+ .|.+++.|+.+.-+|++......... .-..+.. ...+++.+
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecC
Confidence 8876543332 256779999999998777 89999999999999998875432222 2222333 44666665
Q ss_pred C---CEEEEecCCCcEEEEeCCCCeE------EEEEc------cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCC-
Q 013881 283 A---NKLYSGSMDNSIRVWNLETLQC------IQTLT------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG- 344 (434)
Q Consensus 283 ~---~~l~s~s~dg~i~vwd~~~~~~------~~~~~------~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~- 344 (434)
+ +.+++++.|..+++||.+.... +..+. .....|+++.++ +.-|++.-.|-.|+++.-.-+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 3 5899999999999999875321 22222 234568999998 5677777788899999432111
Q ss_pred -----------ceE-EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc
Q 013881 345 -----------NLE-VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG 411 (434)
Q Consensus 345 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg 411 (434)
... .+.+|.....|-.+.|. ++...++++|+.-|.|.||+-.+++.+..+.. ..-|+||.-+|--
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 111 24455555556666554 55556999999999999999999999988876 4478999999998
Q ss_pred -EEEEeCCCCCEEEEEccCCc
Q 013881 412 -LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd~~~g~ 431 (434)
.||+++-|.-|+||--.+.+
T Consensus 449 PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred chhhccCCccceeeecCCccc
Confidence 99999999999999875443
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=5.5e-16 Score=153.39 Aligned_cols=289 Identities=17% Similarity=0.240 Sum_probs=193.6
Q ss_pred EeCCCCceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCC-------ceEEEEe-cCCceEEE--EeCCC
Q 013881 134 WTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASG-------QCAGVIN-LGGEVGCM--ISEGP 202 (434)
Q Consensus 134 wd~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~~~~~--~~~~~ 202 (434)
|+... .++..+..|...|..++.+++ +.+++|||.||+|++||+..- +...++. ....+.++ ...+.
T Consensus 1034 W~p~G--~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRG--ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccc--eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 66553 789999999999999999765 499999999999999998653 2333444 33444444 33444
Q ss_pred EEE-EEcCCcEEEEECCCCc--eE------Eec-CCCCcEEEE-EEeCC----EEEEEeCCCcEEEEEcCCCCCccccce
Q 013881 203 WIF-IGVTNFVKAWNTQTNT--DL------SLS-GPVGQVYAM-AVGND----LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (434)
Q Consensus 203 ~l~-~~~~~~i~~w~~~~~~--~~------~~~-~~~~~v~~l-~~~~~----~l~~g~~dg~i~vwd~~~~~~~~~~~~ 267 (434)
.++ ++.||.|.+.+++... .. ... ...+.+.++ ++... .|+.+...+.|..||++.....+....
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 444 5569999999887632 11 111 122333333 33222 788899999999999988743322222
Q ss_pred eecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc---C--CEEEEEe--CCCcEEE
Q 013881 268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW---D--QFLLSCS--LDKTIKV 337 (434)
Q Consensus 268 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~---~--~~l~s~s--~dg~i~v 337 (434)
....+.|++++.+ ++.+++|+..|.+.+||++-+.++..+.. +..++..+..+ + ...++++ ..+.|.+
T Consensus 1192 --~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 --QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred --CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 2335678888887 56999999999999999999988887753 45677777665 3 4555544 4788999
Q ss_pred EEcCCCCceEEEeeecCC--------------ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc----------
Q 013881 338 WFATDSGNLEVTYTHNEE--------------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER---------- 393 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------- 393 (434)
|++.++.....+...... ....+.-+......+.++++|+.|..|+.||....+..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence 999988666655544110 00011111111233458999999999999998542211
Q ss_pred -------------------c----------------------------cccccCcEEEEEecCCc--EEEEeCCCCCEEE
Q 013881 394 -------------------G----------------------------KIFAKQEIRAIQLGPGG--LFFTGDGTGQVRV 424 (434)
Q Consensus 394 -------------------~----------------------------~~~~~~~v~~~~~spdg--~l~s~~~dg~i~i 424 (434)
. ...|++.|+++++.... +|++++.||.|+|
T Consensus 1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence 0 00145568888876655 9999999999999
Q ss_pred EE
Q 013881 425 WQ 426 (434)
Q Consensus 425 wd 426 (434)
|.
T Consensus 1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred cC
Confidence 94
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=6.7e-16 Score=130.32 Aligned_cols=217 Identities=15% Similarity=0.182 Sum_probs=165.0
Q ss_pred CcEEEE--ECCCCceEE--ecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEcCCCCCccccceee-----cCcc
Q 013881 210 NFVKAW--NTQTNTDLS--LSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTTNCFEPAASL-----KGHS 273 (434)
Q Consensus 210 ~~i~~w--~~~~~~~~~--~~~~~~~v~~l~~~~~-------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~h~ 273 (434)
+.|.+. |.++++.+. ...|..+++.+.|.|+ +|++ .+-.+++|.+........+...+ ..+.
T Consensus 73 Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~ 150 (364)
T KOG0290|consen 73 NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFC 150 (364)
T ss_pred CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhhhccCcccccC
Confidence 455554 444555542 3478999999999887 3443 34479999998644333333333 2456
Q ss_pred ceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeE---EEEEccccccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCC
Q 013881 274 LAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 274 ~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 344 (434)
.+++++.|+ ++++.+.+-|-+..|||++++.. ...+-+|...|..++|.. +.|++.+.||.+|+||++..+
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 789999995 78999999999999999998643 566789999999999983 699999999999999999887
Q ss_pred ceEEEeeecC-CccEEEEEeccCCCCCcEEEEEeCC-CeEEEEeCCCC-ccccccc-ccCcEEEEEecCCc--EEEEeCC
Q 013881 345 NLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCND-NSVRFYDLPSF-AERGKIF-AKQEIRAIQLGPGG--LFFTGDG 418 (434)
Q Consensus 345 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~-~~~~~~~-~~~~v~~~~~spdg--~l~s~~~ 418 (434)
....++.... ......+++.+..+ +++++-..| ..|.|.|++.. ..+.++. |.+.|+.|+|.|.. .|+|+++
T Consensus 231 HSTIIYE~p~~~~pLlRLswnkqDp--nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTPLLRLSWNKQDP--NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred cceEEecCCCCCCcceeeccCcCCc--hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 7666666555 56677787775544 477776544 57999999864 4455554 68899999999987 9999999
Q ss_pred CCCEEEEEccCC
Q 013881 419 TGQVRVWQWCNG 430 (434)
Q Consensus 419 dg~i~iwd~~~g 430 (434)
|..+.|||+.+-
T Consensus 309 D~qaliWDl~q~ 320 (364)
T KOG0290|consen 309 DCQALIWDLQQM 320 (364)
T ss_pred cceEEEEecccc
Confidence 999999999863
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=4.9e-16 Score=131.05 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=165.1
Q ss_pred eEEEEeCCCC--------ceEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce-EEEEecCCceE---E
Q 013881 130 FLHSWTVGDG--------FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVG---C 196 (434)
Q Consensus 130 ~i~vwd~~~~--------~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~---~ 196 (434)
.+.||.+... .+++..|. .|-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+....... .
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 3689998743 23445554 5667999999999999999877 78899999998866 44443332211 1
Q ss_pred E-----E--eCCCEEEEEcCCcEEEEECCCCceE--EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 197 M-----I--SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 197 ~-----~--~~~~~l~~~~~~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
+ . .++..+++..++++..||.++.... ....|...|..+.|+|+ +|++++.||.|++||.+..+ .
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~ 249 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---F 249 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---c
Confidence 1 1 2677888999999999999987765 45679999999999999 89999999999999999875 7
Q ss_pred cceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCC-----------------------------eEEEEEccc
Q 013881 265 PAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL-----------------------------QCIQTLTEH 312 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~-----------------------------~~~~~~~~~ 312 (434)
++..+.+|.-.|.++.|++ .++++++.|..|.+|...+- ..+.++..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 8899999999999999985 57999999999999965321 124567789
Q ss_pred cccEEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 013881 313 TSVVMSLLCW---DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 313 ~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~ 341 (434)
...|++++|+ +=.|++-+.||.+.|=.+.
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999998 4488899999999886543
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=6.5e-16 Score=130.30 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=193.5
Q ss_pred CCCeEEEEeCCC--CceEEEEecCccccEEEEEccC-CCCEEEEEECC-------CcEEEEECCCCc---------eEEE
Q 013881 127 KCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKD-------ETVRVWDCASGQ---------CAGV 187 (434)
Q Consensus 127 ~d~~i~vwd~~~--~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~d-------g~v~iwd~~~~~---------~~~~ 187 (434)
.|..|++-+++. +.-+-..|..|.+.|..|+-+| +.+.|+|+..+ -.+.||.+.... ++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 356677766553 3233455677889999999999 55666666542 246899986542 2222
Q ss_pred Ee--cCCceEEEE--eCCCEEEEEcCCcEEEEECCCCceE--E-----ecCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 013881 188 IN--LGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL--S-----LSGPVGQVYAMAVGND---LLFAGTQDGAILA 253 (434)
Q Consensus 188 ~~--~~~~~~~~~--~~~~~l~~~~~~~i~~w~~~~~~~~--~-----~~~~~~~v~~l~~~~~---~l~~g~~dg~i~v 253 (434)
+. ..+.+.|+. +++..+++-.+..|.+|+++....+ . ..++....++-+|+|. .-+....|+++..
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 22 123566665 4777888888999999999887652 1 1235677888899985 5666778999999
Q ss_pred EEcCCCCCccccceeecCccceEEEEEECCC---EEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc---CCEE
Q 013881 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFL 326 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l 326 (434)
||+++.. +....-.+|...|..+.|+++ +|++++.||.|++||.+. ..+++++.+|...|.++.|+ ++++
T Consensus 198 ~D~RT~~---~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMK---KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchh---hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9999874 333444678899999999976 599999999999999986 56789999999999999998 6799
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEe-eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEE
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAI 405 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 405 (434)
++++.|..|.+|....-..-..+. ..... . .+ ..|..=++=-+..+.+...-.|++.|.++
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~des-e---------~e--------~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDES-E---------SE--------DEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccc-c---------Cc--------chhhHHhcccccccccccccccccceEEE
Confidence 999999999999765332111111 11100 0 00 00000010012223333333578999999
Q ss_pred EecCCc--EEEEeCCCCCEEEEEcc
Q 013881 406 QLGPGG--LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 406 ~~spdg--~l~s~~~dg~i~iwd~~ 428 (434)
+||.-. .+|+-+.||.+.|=++.
T Consensus 337 aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccCCCeeEEEeccCceEEeecCC
Confidence 999866 88999999999886554
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.7e-17 Score=147.83 Aligned_cols=253 Identities=15% Similarity=0.211 Sum_probs=174.4
Q ss_pred cccccceEEEEE--eCCcEEEecCCCeEEEEeCC-------CCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 106 AVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVG-------DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 106 ~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~-------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
..|.+-|..+.| +...+++++.|++|.+|+++ ...+++.+|.+|.++|.|++++++++.+++|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 344555666666 56679999999999999993 235889999999999999999999999999999999999
Q ss_pred EECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce--EEecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 013881 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD--LSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (434)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 252 (434)
|++....-- + |...... -.+.+|.+.|+.+++++. .|++++.||+++
T Consensus 371 w~~p~n~dp--~---------------------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 371 WNLPPNQDP--D---------------------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred eccCCCCCc--c---------------------------cccCcchhccceeccccceeeeeecccccceeeecCCceEE
Confidence 987622110 0 0000001 147899999999999877 999999999999
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEcccc-------ccEEEEEEc
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------SVVMSLLCW 322 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~l~~~ 322 (434)
.|+...... +..........-.++.+-.. ..++...-+.--++++.....+..+.... ..+..+...
T Consensus 422 ~w~~~~~~~---~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 422 LWEPTEESP---CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred eeccCCcCc---cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 999876532 11111111222345555433 23333333333444444444444443221 123334444
Q ss_pred --CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 323 --DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 323 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
....+++..|+.|+++|..++..+.....+.. .+.++++.+++. +|++++.|+.+++|.+.....+..
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~---~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGP---YLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred CCCCeeEecccCCceecccccccccchheeeccc--eecceeecCCCc---eEEeecCCceeehhhccchheeec
Confidence 56889999999999999998887776666654 477777766655 999999999999999876555443
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.6e-16 Score=149.55 Aligned_cols=244 Identities=16% Similarity=0.245 Sum_probs=168.1
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCc
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQ 231 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~ 231 (434)
+-..+.|+|-...++++...-.|+|||.+.++.+..|..+. .....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------------------------------~~~t~ 1111 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------------------------------FPDTR 1111 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC----------------------------------CCCCc
Confidence 34456666666667777666667777777776655543221 24567
Q ss_pred EEEEEEeCC----EEEEEeCCCcEEEEEcCCCC-CccccceeecC---c----cceEEEEEEC--CCEEEEecCCCcEEE
Q 013881 232 VYAMAVGND----LLFAGTQDGAILAWKFNVTT-NCFEPAASLKG---H----SLAVVSLVVG--ANKLYSGSMDNSIRV 297 (434)
Q Consensus 232 v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~---h----~~~v~~l~~~--~~~l~s~s~dg~i~v 297 (434)
|+.+.+-++ ++++|+.||.|+||+--... ...+.+....+ + .+.-.-+.|. ..+|++++.-..|+|
T Consensus 1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI 1191 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI 1191 (1387)
T ss_pred cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE
Confidence 788887554 89999999999999754332 22233322221 1 1111233443 446777777899999
Q ss_pred EeCCCCeEEEEEcc-ccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCc---eEEEeeecCCccEEEEEeccCCCCC
Q 013881 298 WNLETLQCIQTLTE-HTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 298 wd~~~~~~~~~~~~-~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
||....+++..+.. ....|++++.+ ++.+++|..||.|++||.+.... +.....|.....|..+.+.+.+-+
T Consensus 1192 WDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~- 1270 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG- 1270 (1387)
T ss_pred EecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-
Confidence 99998888877754 45567888776 78999999999999999986543 344455555555777777665544
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccccc---c---cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIF---A---KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~---~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.|++|+.||.|++||++.......+. + .+..+++..+++. .+|+|+. +.|+||++...++
T Consensus 1271 -elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1271 -ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred -ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence 59999999999999999842222221 1 3359999999999 9999998 9999999986554
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=5.6e-16 Score=130.82 Aligned_cols=238 Identities=13% Similarity=0.189 Sum_probs=175.1
Q ss_pred ccccceEEEEEeCCc-----EEEecCCCeEEEEeCCCC---ceEEEEec-----CccccEEEEEccC-CCCEEEEEECCC
Q 013881 107 VIKTDILCRNWVQGN-----CMYGEKCKFLHSWTVGDG---FKLLTQLE-----GHQKVVSGITLPS-GSDKLYSGSKDE 172 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~-----~~~g~~d~~i~vwd~~~~---~~~~~~l~-----~h~~~V~~l~~s~-~~~~l~s~s~dg 172 (434)
.|.-|++-+.|.++. -+.++.+..+++|.+... .++...|. .+..++++..|+. +.++|.++|-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 566789999997765 356778889999998732 22222232 3567899999976 788999999999
Q ss_pred cEEEEECCCCce--EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeC
Q 013881 173 TVRVWDCASGQC--AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ 247 (434)
Q Consensus 173 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~ 247 (434)
+..|||++++.. ++ ..+..|...|+.++|... .+++.+.
T Consensus 174 TCTiWdie~~~~~~vk------------------------------------TQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVK------------------------------------TQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred eEEEEEEeecccccee------------------------------------eEEEecCcceeEEEeccCccceEEEecC
Confidence 999999998732 11 136789999999999875 9999999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCC-CcEEEEeCCC-CeEEEEEccccccEEEEEEc
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMD-NSIRVWNLET-LQCIQTLTEHTSVVMSLLCW 322 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d-g~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~ 322 (434)
||++++||++..... ..+..-.....+...++|+ ++++++-..| ..|.+.|++. ..++..+..|++.|..++|.
T Consensus 218 DGSvRmFDLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred CCcEEEEEecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec
Confidence 999999999986431 1122222225567788885 5677776655 5799999987 56789999999999999998
Q ss_pred ---CCEEEEEeCCCcEEEEEcCCCCc---eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 323 ---DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 323 ---~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
...|++++.|..+.+||+.+... ...+........+..+.|.+..++ +++++. ++.+.|
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D--wiai~~-~kklei 361 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD--WIAICF-GKKLEI 361 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC--EEEEEe-cCeeeE
Confidence 57999999999999999976543 111112223456888888876554 676664 344443
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=4.7e-18 Score=161.56 Aligned_cols=239 Identities=19% Similarity=0.323 Sum_probs=185.9
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
++.++.|.||..+|+|..|...|.++++|+.|..|+||..+++.++..
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------------------- 227 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-------------------------------- 227 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--------------------------------
Confidence 355677789999999999999999999999999999999999887754
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEE
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRV 297 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 297 (434)
..+|.+.|+.++.+.+ ++++++.|..|++|.+..+ .++..+.+|++.|++++|++.. +.+.||++++
T Consensus 228 -----~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~----~pvsvLrghtgavtaiafsP~~--sss~dgt~~~ 296 (1113)
T KOG0644|consen 228 -----CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG----APVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRI 296 (1113)
T ss_pred -----CCCCccccchhccchhhhhhhhcccCceEEEEecCCC----chHHHHhccccceeeeccCccc--cCCCCCceEe
Confidence 6799999999999877 8999999999999999998 8899999999999999999866 7889999999
Q ss_pred EeCCCCeEEEEE----cc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 298 WNLETLQCIQTL----TE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 298 wd~~~~~~~~~~----~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
||.+- ..+... +. ....+.++.+. +..+++++.|+.-..|.+....... ....-+....+. .
T Consensus 297 wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~--------~~lif~t~ssd~--~ 365 (1113)
T KOG0644|consen 297 WDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS--------NLLIFVTRSSDL--S 365 (1113)
T ss_pred ccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc--------cceEEEeccccc--c
Confidence 99882 111111 11 12334455554 6789999999999988654321110 011111111111 1
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCcc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.+.+++-.+-.+.+|++.++.+...+. |..++..+.++|-. ...+++.||...|||+-.|--
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 267777788899999999998877654 57889999999977 677899999999999987743
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.6e-16 Score=134.77 Aligned_cols=187 Identities=13% Similarity=0.163 Sum_probs=148.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC----CCEEEEecCCCcEEEEeCCCCeEEEE--Ecccc
Q 013881 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETLQCIQT--LTEHT 313 (434)
Q Consensus 240 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~ 313 (434)
..++++...|.|++||..++ ..+..++++...+..+.|. +..+++++.||+|++||+++...... +..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg----~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG----QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccch----hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 37899999999999999987 6777888888877777773 56899999999999999998665443 34454
Q ss_pred -ccEEEEEEc--CCEEEEEeC----CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 314 -SVVMSLLCW--DQFLLSCSL----DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 314 -~~v~~l~~~--~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
.+..+++.. ++.+++|+. +-.|.+||++..+++...+...+...|+.+.|+|..++ +|++|+.||.|.+||
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn--lLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN--LLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC--eEEeecccceEEeee
Confidence 455666664 567777654 67899999999887444444445567999999988764 899999999999999
Q ss_pred CCCCc----ccccccccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCcc
Q 013881 387 LPSFA----ERGKIFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 387 ~~~~~----~~~~~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+.... ++..+.+...|..+.|..++ .|.+-+..++..+|+++.+..
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 97653 33445567889999999999 999999999999999998763
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-15 Score=132.60 Aligned_cols=281 Identities=12% Similarity=0.147 Sum_probs=200.4
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC------ceEEEEecC--CceEEEEe--CCCEEEEEc-CCc
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG------QCAGVINLG--GEVGCMIS--EGPWIFIGV-TNF 211 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~------~~~~~~~~~--~~~~~~~~--~~~~l~~~~-~~~ 211 (434)
.+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++.. +.+.....+ ..+.|+.+ .+.+++.|. +++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3456789999999999999999999999999999998643 444444433 45667765 567777765 789
Q ss_pred EEEEECCCCceEEecCCCC---cEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---C
Q 013881 212 VKAWNTQTNTDLSLSGPVG---QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---A 283 (434)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~---~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~ 283 (434)
|.+.|+++.+.+....|.. .|+.+..+|. .|++.+.++.|.+||.+.......+. .+........++.|+ +
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCc
Confidence 9999999999887666665 8999999887 99999999999999998764322221 122233445666676 4
Q ss_pred CEEEEecCCCcEEEEeCCCCeE-EEE------EccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC
Q 013881 284 NKLYSGSMDNSIRVWNLETLQC-IQT------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~-~~~------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
.+|++.+..+-+.+||.+..+. +.. +......-+.+.|+ |+.|++--....-.+||+....+......|..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 6899999999999999986432 111 11111222455665 77888877777788889887666555555443
Q ss_pred C-----ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc------ccc-----------------c-cccCcEEEE
Q 013881 355 E-----HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------RGK-----------------I-FAKQEIRAI 405 (434)
Q Consensus 355 ~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~-----------------~-~~~~~v~~~ 405 (434)
. ..+.+++|..+. -+++|+.+-.|++|.++.... +.. + .|..-++.+
T Consensus 288 ~GY~N~~T~KS~~F~~D~----~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY----TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred Ccceeeeeeeeeeeecce----eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 2 233445554332 499999999999999865221 111 1 135567899
Q ss_pred EecCCc-EEEEeCCCCCEEEEEcc
Q 013881 406 QLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 406 ~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.|+|.. +|++.+-...++||.-.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecCCcceEeccchhhheeccccc
Confidence 999999 89999999999999743
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.9e-15 Score=144.77 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=174.1
Q ss_pred ccceEEEEE---eCCcEEEecCCCeEEEEeCCCCceE-E----EEecCccccEEEEEccCCC--CEEEEEECCCcEEEEE
Q 013881 109 KTDILCRNW---VQGNCMYGEKCKFLHSWTVGDGFKL-L----TQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWD 178 (434)
Q Consensus 109 ~~~i~c~~~---~~~~~~~g~~d~~i~vwd~~~~~~~-~----~~l~~h~~~V~~l~~s~~~--~~l~s~s~dg~v~iwd 178 (434)
..+|.|+.| .+..++.|..+|.|.+||+..+... . .....|..+|+.+.|..+. .-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 458999998 4556777889999999999865331 1 2234689999999996543 5599999999999998
Q ss_pred CCCCceEEEE-ecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 179 CASGQCAGVI-NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
++.-...... ....... ...-......+++++|.+. .+++|+++|.|..-
T Consensus 322 ~~~l~~P~e~~~~~~~~~--------------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKH--------------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred ccccccchhhcccccccc--------------------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 7654321110 0000000 0001123456778888655 99999999999884
Q ss_pred EcCCCCCc----cccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCC-CCeEEEEEccccccEEEEEEc---C
Q 013881 255 KFNVTTNC----FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW---D 323 (434)
Q Consensus 255 d~~~~~~~----~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~~---~ 323 (434)
+-...... ++....+..|.++|.++.+++ ..|++++ |-+|+||... ...++..+..+...+++++|+ +
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 43333222 244556778899999999874 4566655 9999999988 777888888888999999999 5
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
..|+++..||.|.+||+.....-..............+.+. ..+++|++|...|.+++|++..
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s---~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS---PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCcccccccccccceeecC---CCCcEEEEecCCCcEEEEEcCc
Confidence 68999999999999999765432222221112223334443 3344999999999999999963
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=145.20 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=161.1
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.+.+.|.||++.|.+++|+.+|.+|++||.|-.+.|||.-..+.++.+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------------- 88 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------------------------------- 88 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--------------------------------
Confidence 455778999999999999999999999999999999999877776654
Q ss_pred ceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCC------ccccceeecCccceEEEEEEC---CCEEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTN------CFEPAASLKGHSLAVVSLVVG---ANKLY 287 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~h~~~v~~l~~~---~~~l~ 287 (434)
-.+|...|.++.|-|. ++++|..|..|+++|+...+. .......+..|...|..|+.. ++.+.
T Consensus 89 ----~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 89 ----STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred ----ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence 4689999999999876 999999999999999985321 124556667888888888774 46899
Q ss_pred EecCCCcEEEEeCCCCeE-EEE------E---ccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC
Q 013881 288 SGSMDNSIRVWNLETLQC-IQT------L---TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 288 s~s~dg~i~vwd~~~~~~-~~~------~---~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
++++||+|+-+|++.... -.. + ...--...++..+ +.+|++|+.|-..++||.+...+. +..
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks--~~s--- 239 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS--FRS--- 239 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC--CCC---
Confidence 999999999999987321 111 1 1111233556665 679999999999999996432111 100
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-ccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER-GKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.... ...| +. .++.|+-|-....+.. ..+.+ ...++-+.|+|+| .|+..-....|+++|+..++
T Consensus 240 -~~~~--~~~p--p~--------~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 240 -DGTM--NTCP--PK--------DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred -Cccc--cCCC--Cc--------ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 0000 0111 00 1122222221111000 00111 2236778999999 55555555679999998776
Q ss_pred c
Q 013881 432 V 432 (434)
Q Consensus 432 ~ 432 (434)
-
T Consensus 307 ~ 307 (758)
T KOG1310|consen 307 S 307 (758)
T ss_pred C
Confidence 3
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=9.7e-14 Score=129.37 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=190.6
Q ss_pred EecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE--eCC
Q 013881 124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEG 201 (434)
Q Consensus 124 ~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~ 201 (434)
+-..++.|.+.|..+. +.+.++......-..+.|+||++++++++.||.|.++|+.+++.+.++..+.....+. .++
T Consensus 11 ~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG 89 (369)
T PF02239_consen 11 VERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG 89 (369)
T ss_dssp EEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT
T ss_pred EecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC
Confidence 4557899999999997 8899998665544557899999999999999999999999999999999988776654 588
Q ss_pred CEEEEEc--CCcEEEEECCCCceEE-ec-------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 202 PWIFIGV--TNFVKAWNTQTNTDLS-LS-------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 202 ~~l~~~~--~~~i~~w~~~~~~~~~-~~-------~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
++++++. .+.+.++|.++.+.+. +. ....++.++..++. ++++--+.+.|.+.|+..... +...
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~ 166 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---LKVT 166 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC---EEEE
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc---ccee
Confidence 8888764 7899999999988762 21 13457777877666 444445558898888876532 1111
Q ss_pred ecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEcc----ccccEEEEE-------E----cCCEEEEEe
Q 013881 269 LKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLL-------C----WDQFLLSCS 330 (434)
Q Consensus 269 ~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~-------~----~~~~l~s~s 330 (434)
............++ +++++ +...+..|-++|.++++.+..+.. |..++..+- | .+...++.-
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 21122334455565 55654 456678999999999988776542 433333321 1 133333333
Q ss_pred CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE----eCCCeEEEEeCCCCccccccccc--CcEEE
Q 013881 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSFAERGKIFAK--QEIRA 404 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~--~~v~~ 404 (434)
....+.+||..+.+.+..+..... . .-+..+|+++ ++.+. ...++|.++|.++.+....+... ..+..
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~--g-lFi~thP~s~---~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGG--G-LFIKTHPDSR---YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSS--S---EE--TT-S---EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred cCCccccchhhcCeEEEEEECCCC--c-ceeecCCCCc---cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 344666788877777776665433 2 4555565554 77776 45689999999999877777643 34999
Q ss_pred EEecCCc-EE-EEeC-CCCCEEEEEccCCccc
Q 013881 405 IQLGPGG-LF-FTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 405 ~~~spdg-~l-~s~~-~dg~i~iwd~~~g~~~ 433 (434)
+.|++|| ++ ++.- .++.|.|||..+.+++
T Consensus 321 ~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 321 MEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999 33 3433 3448999999987764
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=9.8e-14 Score=129.27 Aligned_cols=263 Identities=15% Similarity=0.260 Sum_probs=159.3
Q ss_pred EecCCCeEEEEeCCC-C-ceEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCC-CceEEEEecCCceEEEEe
Q 013881 124 YGEKCKFLHSWTVGD-G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCAS-GQCAGVINLGGEVGCMIS 199 (434)
Q Consensus 124 ~g~~d~~i~vwd~~~-~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~ 199 (434)
+...++.|++|++.+ + .+.+..+. +.+....++++|++++|++++ .++.|.+|++.. ++.. ...
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~---------- 74 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAA---------- 74 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eee----------
Confidence 345789999999964 3 23556665 346677899999999987765 478899999863 3221 110
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEEEcCCCCCccccceeecCccceE
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
..........+.++++ .|++++ .++.|.+|++.......+....+.+ ....
T Consensus 75 -------------------------~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~ 128 (330)
T PRK11028 75 -------------------------ESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGC 128 (330)
T ss_pred -------------------------eecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcc
Confidence 0011223567888877 555554 5899999999753211122222222 2223
Q ss_pred EEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEE-------EEccccccEEEEEEc--CCEEEEEeC-CCcEEEEEcCCC
Q 013881 277 VSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQ-------TLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDS 343 (434)
Q Consensus 277 ~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~-------~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~ 343 (434)
..+.++ +++++ +...++.|.+||+.+...+. .... ......+.++ +++++++.. +++|.+|++...
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 444454 55664 55567999999997633221 1111 2234556666 568877776 999999999742
Q ss_pred -CceEEEee---ec----CCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCCcc----cccccccCcEEEEEecCC
Q 013881 344 -GNLEVTYT---HN----EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSFAE----RGKIFAKQEIRAIQLGPG 410 (434)
Q Consensus 344 -~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~----~~~~~~~~~v~~~~~spd 410 (434)
+.+..... .. .......+.++|++. +++++. .++.|.+|++..... +..+........+.++||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~---~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGR---HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCC---EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 22222211 11 111223466665443 677764 478999999965432 222222334568899999
Q ss_pred c-EEEEeC-CCCCEEEEEcc
Q 013881 411 G-LFFTGD-GTGQVRVWQWC 428 (434)
Q Consensus 411 g-~l~s~~-~dg~i~iwd~~ 428 (434)
| +|+++. .+++|.+|++.
T Consensus 285 g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEEEccCCcEEEEEEc
Confidence 9 776655 58999999885
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=9.2e-15 Score=125.20 Aligned_cols=201 Identities=18% Similarity=0.204 Sum_probs=159.3
Q ss_pred ccceEEEEEeCC--cEEEecCCCeEEEEeCCCC--ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC-CCc
Q 013881 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQ 183 (434)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~~ 183 (434)
..+|+|.+|..+ .++++.....|.||..... .+..++++.|...|+.|.|+|..+.|++++.|..-+||... .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 469999999655 3555667779999987643 58899999999999999999999999999999999999984 433
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
-..+ +.+..+....+++.|+|. .+++|+....|.||-++....
T Consensus 90 Wkpt-----------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd 134 (361)
T KOG1523|consen 90 WKPT-----------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND 134 (361)
T ss_pred eccc-----------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence 2222 246678889999999998 999999999999999887643
Q ss_pred ccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCC-----C-------------CeEEEEEccccccEEEEEE
Q 013881 262 CFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE-----T-------------LQCIQTLTEHTSVVMSLLC 321 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~-----~-------------~~~~~~~~~~~~~v~~l~~ 321 (434)
=+.....-+.+...|++++|.++ +|++|+.|+..|||..- + |+++.++....+.+..+.|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 22333344567788999999865 78899999999999641 1 2334445456678899999
Q ss_pred c--CCEEEEEeCCCcEEEEEcCCCC
Q 013881 322 W--DQFLLSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 322 ~--~~~l~s~s~dg~i~vwd~~~~~ 344 (434)
+ |..|+-.+.|..+.+-|.....
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc
Confidence 8 8999999999999999987664
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.8e-14 Score=134.49 Aligned_cols=320 Identities=12% Similarity=0.164 Sum_probs=221.0
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
+....|++.|+|++|+.++ ..+|+.|+.|.+|+..-. -+..+ .|.+.|.||.|+|-...|+|++-.. .-+|..+
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~ 122 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE 122 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEeccccc--ceeee-ccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence 4467899999999997654 555789999999996632 22233 4999999999999999999998754 7789876
Q ss_pred CCceEEEEecCCceEEEE--eCCCEEEEEc-CCcEEEEECCCCceEEec---CCCCcEEEEEEeCC-------EEEEEeC
Q 013881 181 SGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGND-------LLFAGTQ 247 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~~i~~w~~~~~~~~~~~---~~~~~v~~l~~~~~-------~l~~g~~ 247 (434)
..... ..+....+.+.+ .++.+++.|. +|+|.+-+....+...+. +...+|.+++|+|. .+++...
T Consensus 123 qK~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 123 QKSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred hhhHH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 54332 233333444443 3788888875 889998877666655444 47889999999886 8889999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--C
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D 323 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~ 323 (434)
..++.++.+.... +..-+.-.-...|+++ +|.+++.|+.|+.+.+|- +.|-.+.++......|..++.. +
T Consensus 202 ~qTLSFy~LsG~~-----Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 202 GQTLSFYQLSGKQ-----IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred cceeEEEEeccee-----ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 9999999887532 2111111122234444 788999999999999997 6677788887778888888876 7
Q ss_pred CEEEEEeCCCcEEEEEcCCC-----------------------------------------------------CceEEEe
Q 013881 324 QFLLSCSLDKTIKVWFATDS-----------------------------------------------------GNLEVTY 350 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~-----------------------------------------------------~~~~~~~ 350 (434)
++++.|+.||+|..|++-.. +.+....
T Consensus 276 Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYe 355 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYE 355 (1081)
T ss_pred ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEe
Confidence 79999999999998854210 0000000
Q ss_pred eecC---------------------------------CccEEEEEec-------------------cCCCCCcEEEEEeC
Q 013881 351 THNE---------------------------------EHGVLALCGM-------------------PDSEGKPVLLCSCN 378 (434)
Q Consensus 351 ~~~~---------------------------------~~~~~~~~~~-------------------~~~~~~~~l~~~~~ 378 (434)
...+ +....++.|+ -.+.+..-|+.|..
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlk 435 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLK 435 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEec
Confidence 0000 0000111111 11233345788888
Q ss_pred CCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 379 DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 379 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|.|.-.=+++.-++........|.|+.++... .|++..+.++..++|+.++++.
T Consensus 436 nGqV~kiF~dN~~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL 491 (1081)
T KOG1538|consen 436 NGQVLKIFVDNLFPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL 491 (1081)
T ss_pred CCcEEEEEecCCchhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE
Confidence 887654445554455445557889999999999 9999999999999999998863
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=6e-16 Score=138.45 Aligned_cols=257 Identities=13% Similarity=0.142 Sum_probs=200.8
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe--CCCEEEEEcCCcEEEEECCCCceEEecCC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~~~~ 228 (434)
-.-..+.++.+|++|+.|+.-|.|-.+|+.++++...+...+.+..+.+ ...+++++....+.+||-..-+...+..|
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 3445688899999999999999999999999999999998888777654 67788888899999999887776655554
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCe
Q 013881 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 229 ~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 304 (434)
..|..+.|-|. +|++++..|.+..-|+.++ +.+..+....+.+..+.-++ ..+-+|...|+|.+|.....+
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 46888999998 8889999999999999998 67777777777777777775 367789999999999999999
Q ss_pred EEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeE
Q 013881 305 CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (434)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 382 (434)
++..+..|.++|.+++++ |.|+++.+.|..++|||++....+..+.. .. ....++++. .+ +|+. +....|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~--~a~~ls~Sq---kg-lLA~-~~G~~v 356 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PH--PASNLSLSQ---KG-LLAL-SYGDHV 356 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CC--Ccccccccc---cc-ceee-ecCCee
Confidence 999999999999999998 88999999999999999998876666655 22 234444432 22 4444 456689
Q ss_pred EEEeCC-CCc---ccccccc--cCcEEEEEecCCc-EEEEeCCCC
Q 013881 383 RFYDLP-SFA---ERGKIFA--KQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 383 ~iwd~~-~~~---~~~~~~~--~~~v~~~~~spdg-~l~s~~~dg 420 (434)
.||.=. .+. ....+.| ...|..+.|.|-. .|-.|-..|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 999532 211 1112223 5689999999965 555554444
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4.1e-13 Score=115.16 Aligned_cols=230 Identities=13% Similarity=0.199 Sum_probs=171.2
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec---CCceEEEEeCCCEEE-EEc-C------CcEEEEECCCC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEVGCMISEGPWIF-IGV-T------NFVKAWNTQTN 220 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~-~------~~i~~w~~~~~ 220 (434)
...+++|+.|..-++.|..+| .+||+++--+....-.. +-.+.-+.+...+++ +|. . +.+.+||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 344599999999999999888 99999876433222111 112222333344443 332 2 48999997666
Q ss_pred ceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeec--CccceEEEEEECCC--EEEE-ecCCCcE
Q 013881 221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVVGAN--KLYS-GSMDNSI 295 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~--~l~s-~s~dg~i 295 (434)
..+.......+|.++.+.++.+++.-. +.|+||.+.... +.+..+. ......+++....+ .|+. |-.-|.|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEec-CeEEEEEcCCCh---hheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666666778899999999997766554 689999998653 3333332 22334666666532 3443 4556999
Q ss_pred EEEeCCCCeE--EEEEccccccEEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 296 RVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 296 ~vwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
+|-|+...+. ...+.+|...|.+++.+ |..+|++|..|+ |||||..+++.+..+........+.+++|+|+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-- 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-- 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc--
Confidence 9999987665 47888999999999998 889999999887 8999999999999999888888999999998877
Q ss_pred cEEEEEeCCCeEEEEeCCC
Q 013881 371 PVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~ 389 (434)
+|+++|..|+|+||.++.
T Consensus 240 -~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 -WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -EEEEEcCCCeEEEEEeec
Confidence 999999999999999865
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.9e-14 Score=130.96 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=193.8
Q ss_pred CccccEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEecCCceEEEEe----CCCEEEEEcCCcEEEEECCCCce
Q 013881 148 GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMIS----EGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+|...-+.|..+|||+|++ ||..--.|++||+....+...-.....+..+.. -...++...|..|.+...-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-H 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-e
Confidence 4788889999999999865 566678999999988766555555544433321 123444455665554432221 1
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEE
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVW 298 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw 298 (434)
..+.- ...-..++++.- -|++++....|+-+++..+ ..+..+......+.++..++ .+|++|+.+|.|..|
T Consensus 128 y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 128 YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeec-CcCCccccccCCCccEEEeecCcceEEEEcccc----ccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 11110 111123444322 4445555567888888887 66777777778888888874 578899999999999
Q ss_pred eCCCCeEEEEEcc------ccc-----cEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEecc
Q 013881 299 NLETLQCIQTLTE------HTS-----VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 299 d~~~~~~~~~~~~------~~~-----~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
|.++...+..+.. |.+ .|+++.|. |-.+++|+.+|.+.|||++....+ ....|....++..+.|.+
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQD 281 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeeecccc
Confidence 9998877666543 323 38999998 458999999999999999987665 455666677899999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.. ..+.+++. ....++|||-.+++....+.....++.+++-|++ +++++-+++.+..|=+.
T Consensus 282 ~~-~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 282 TD-QQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cC-CCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 73 33355544 5678999999999999999988889999999999 99999998887766543
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=7.1e-15 Score=133.83 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=182.9
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc-e-EEE-----E-----eCCCEEEEEcCCcEEEE
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V-GCM-----I-----SEGPWIFIGVTNFVKAW 215 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~-~~~-----~-----~~~~~l~~~~~~~i~~w 215 (434)
.|...|.++.|+.....+.+++.+..+.-||+.+. .......... + ..+ . ..+.+++++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46777889999887776666665555555555443 2222222211 1 111 1 13457778889999999
Q ss_pred ECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC---EEEEec
Q 013881 216 NTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGS 290 (434)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s 290 (434)
+....-+.....|.+.+.+-.|+++ -|+++++||.|++|.-.. ....++.....+|.|++|.++ .+++.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 8877777788999999999999999 899999999999998554 334455566788999999754 455443
Q ss_pred CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 291 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
+.+.|=.+.....+-..+.|.+-|.++.|+ .+.+++|++|-..+|||.... ..+....++.++++++|.|+ .
T Consensus 166 --~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 166 --GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---NLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred --CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---ccccCChhccceeeeeeccc-c
Confidence 567777777777788899999999999999 789999999999999986432 23444455678999999887 2
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEE
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iw 425 (434)
.++.++. +++++ .....+.|..++||+|| .++.|...|.+.+=
T Consensus 240 ---~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 ---DYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---ceeeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 4666653 34551 11235789999999999 99999999987653
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=132.88 Aligned_cols=327 Identities=13% Similarity=0.206 Sum_probs=209.4
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCC---CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD---GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~---~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
.....|...++|.++++.. +++|..||.|.+|.--. .....+.++=|...|.+++|+++|.+|+||+..|.+.+|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 3455677779999997754 56677899999997432 224556778899999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEE--eCCCE-EEEEcCCcEEEEECCCCceE-Eec-----------CCCCcEEEEEEeCC--
Q 013881 178 DCASGQCAGVINLGGEVGCMI--SEGPW-IFIGVTNFVKAWNTQTNTDL-SLS-----------GPVGQVYAMAVGND-- 240 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~--~~~~~-l~~~~~~~i~~w~~~~~~~~-~~~-----------~~~~~v~~l~~~~~-- 240 (434)
.+++++....-+.+.++..+. +++.+ .++..|+.|.+......+.. ++. ...+-.+.++++|.
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 999998655556677776654 34444 44566899998887554432 111 12344566777774
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeec-------CccceEEEEEEC--CCEEEEec--------CC--CcEEEEeCC
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLK-------GHSLAVVSLVVG--ANKLYSGS--------MD--NSIRVWNLE 301 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-------~h~~~v~~l~~~--~~~l~s~s--------~d--g~i~vwd~~ 301 (434)
.++-.+..|.|.+||+-+....++...... .+...++.+..+ ++++++.- .| -.+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 788889999999999988754322221111 122334444433 56666542 22 356778655
Q ss_pred CCeE----EEEE-ccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCce--------EEEeeecCCccEEEEEec
Q 013881 302 TLQC----IQTL-TEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL--------EVTYTHNEEHGVLALCGM 364 (434)
Q Consensus 302 ~~~~----~~~~-~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~ 364 (434)
.... ...+ ..|...+.+..+. ...+++++.||.++||-+.+...+ .....+-+...+.+.+|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 4332 2222 3466666555554 348999999999999988443221 111222233557777777
Q ss_pred cCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecC---CcEEEEeCCCCCEEEEEccCCccc
Q 013881 365 PDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGP---GGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 365 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp---dg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.++. +++.+.|++|.+||..+...+..... .-++..+.+.. ....+.......+.+|++.+..++
T Consensus 519 ~dGs----lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 519 QDGS----LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI 588 (792)
T ss_pred CCCc----EEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence 6554 55666899999999998533332222 22233333322 113334445678999998877653
No 201
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.64 E-value=8.5e-13 Score=125.30 Aligned_cols=298 Identities=13% Similarity=0.130 Sum_probs=194.8
Q ss_pred EeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEE
Q 013881 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (434)
Q Consensus 117 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (434)
...+.+++++.++.|+.+|..+| +.+...+-......... .++..++.++.++.|..+|..+|+.+........+.+
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 139 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS 139 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec
Confidence 35678888999999999999999 77766554432222222 2567888899999999999999999888776655432
Q ss_pred E--EeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcE-----EEEEEeCCEEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 197 M--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQV-----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 197 ~--~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v-----~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
. ..++.+++...++.+..+|.++++.+ ........+ .+.....+.++.+..++.+..+|..++...++....
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 2 23444555556889999999998875 222211111 112233457888889999999999887433221110
Q ss_pred ec-Ccc-----ceE-EEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcC
Q 013881 269 LK-GHS-----LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 269 ~~-~h~-----~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 341 (434)
.. +.. ..+ .+....++.++.++.+|.++.||.++++.+..... .........++.+++++.||.|..+|..
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECC
Confidence 00 000 000 11223467888899999999999999988776652 1223444568889999999999999998
Q ss_pred CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccC-cEEEEEecCCcEEEEeCCCC
Q 013881 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQ-EIRAIQLGPGGLFFTGDGTG 420 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~spdg~l~s~~~dg 420 (434)
+++.+......... ...+... .+ ..|++++.+|.|+++|..+++.+.++.... .+..--...++.|+.++.||
T Consensus 298 tG~~~W~~~~~~~~-~~ssp~i--~g---~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 298 SGSELWKNDELKYR-QLTAPAV--VG---GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred CCcEEEccccccCC-ccccCEE--EC---CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCc
Confidence 87655433221111 1111111 12 278889999999999999999988776433 33322222244788888999
Q ss_pred CEEEE
Q 013881 421 QVRVW 425 (434)
Q Consensus 421 ~i~iw 425 (434)
.|+.|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 98876
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.9e-14 Score=122.15 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=195.5
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCC-----ceEEEEec-CccccEEEEEccCCCCEEEEEECCCcE
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-----FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETV 174 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~-----~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v 174 (434)
+....|.+-|..+.|+.+. ++.|+.|..+++|+++.- -+++.... .|...|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4567888899999997665 455778999999998732 15555543 356899999999999999999999999
Q ss_pred EEEECCCCceEEEEecCC---ceEEEE--e-CCCEEEEEcCCcEEEEECCCCc----eEEecCCCCcEEEEEEeCC---E
Q 013881 175 RVWDCASGQCAGVINLGG---EVGCMI--S-EGPWIFIGVTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND---L 241 (434)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~---~~~~~~--~-~~~~l~~~~~~~i~~w~~~~~~----~~~~~~~~~~v~~l~~~~~---~ 241 (434)
.+.|+++.+.+..+.... .+..+. + ++.++++..++.|.+||.+... .+.+.......+.+.|+|. +
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999999888765 455443 2 5556666778999999987655 2344456677889999987 8
Q ss_pred EEEEeCCCcEEEEEcCCCCCccccceeecCccc---eEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcccc---
Q 013881 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL---AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT--- 313 (434)
Q Consensus 242 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--- 313 (434)
|++.+..+-+-+||.+......-....+.+-.. .-....|+ |+.|++--....-.+||+-+..+.---..|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 999999999999999876432111111122222 22455554 6778777766677788887755432222222
Q ss_pred ----ccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCC-----------------------ceEEEeeecCCccEEEEEecc
Q 013881 314 ----SVVMSLLCW-DQFLLSCSLDKTIKVWFATDSG-----------------------NLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 314 ----~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 365 (434)
..+.++.|. ...+++|+.+-.|++|.+.... .+..+..|. .-+..+.|++
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR--Sv~NQVRF~~ 367 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR--SVPNQVRFSQ 367 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc--ccccceeecC
Confidence 245666676 4568999999999999774321 111222222 3355667766
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCC
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
... +|++++-.+.++||.-.
T Consensus 368 H~~---~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 368 HNN---LLVSSGVENSFKLWSDH 387 (609)
T ss_pred Ccc---eEeccchhhheeccccc
Confidence 544 88888889999999653
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1e-11 Score=108.78 Aligned_cols=225 Identities=14% Similarity=0.143 Sum_probs=169.1
Q ss_pred cceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCC--cEEEEECCCCceE
Q 013881 110 TDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCA 185 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~ 185 (434)
..+.+..|..+. +..|+.||+ ++++.+.-.+... .......|--+-|+ ..++|..+.+. .+++.+++.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~-~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFS-KDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhc-ccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 355666674442 334666664 6677665323111 11122345555565 44566555544 5999999999999
Q ss_pred EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE-E---ecCCCCcEEEEEEeCC--EEEE--EeCCCcEEEEEcC
Q 013881 186 GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-S---LSGPVGQVYAMAVGND--LLFA--GTQDGAILAWKFN 257 (434)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~-~---~~~~~~~v~~l~~~~~--~l~~--g~~dg~i~vwd~~ 257 (434)
..+....++.++-.+.+.|++.....|++||+...+.+ + ...+...+.++.++.. +++. ....|.|.+||..
T Consensus 82 Ce~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred EEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 99999999999999888888888888999999998876 2 2345666888888776 5554 2346999999998
Q ss_pred CCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc-EEEEeCCCCeEEEEEcccc--ccEEEEEEc--CCEEEEEe
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTEHT--SVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~--~~v~~l~~~--~~~l~s~s 330 (434)
+- ++...+..|.+++.+++|+ |.+|++++..|+ |||+.+.+|+.+.+|+... ..|.+++|+ +++|.+.+
T Consensus 162 nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 162 NL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred cc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 87 7888999999999999996 679999999997 7899999999999997643 456889998 67899999
Q ss_pred CCCcEEEEEcCC
Q 013881 331 LDKTIKVWFATD 342 (434)
Q Consensus 331 ~dg~i~vwd~~~ 342 (434)
..++|.||.+.+
T Consensus 238 ~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 238 NTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEEEecc
Confidence 999999998764
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=4.9e-12 Score=108.66 Aligned_cols=231 Identities=13% Similarity=0.190 Sum_probs=168.8
Q ss_pred ceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEE-EECC------CcEEEEECCCC
Q 013881 111 DILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKD------ETVRVWDCASG 182 (434)
Q Consensus 111 ~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-~s~d------g~v~iwd~~~~ 182 (434)
....+.| .+..+++.+.|.-.+||+.+.- +.....+-+.+.+.-+..--..++|+- |+.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~-ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPF-KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCch-hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 3444788 4456888888888899998752 322222223333222222223455543 3332 47999998888
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE----EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEE
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWK 255 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd 255 (434)
+++.++....++..+......+++..++.|.+|........ ..........+++-..+ +.+-|-.-|.|.+-|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 99999999999999999999999999999999998854332 12222333555555444 334466779999999
Q ss_pred cCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc-EEEEeCCCCeEEEEEcc--ccccEEEEEEc--CCEEEE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~s 328 (434)
+..... .......+|...|.+++.+ |.+++++|..|+ |||||..+++.++++.. ....|.+++|+ ..+|++
T Consensus 166 L~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 166 LASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 987632 2357788999999999986 789999999997 79999999999999975 45779999999 569999
Q ss_pred EeCCCcEEEEEcCCCC
Q 013881 329 CSLDKTIKVWFATDSG 344 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~ 344 (434)
+|..|+|.||.++...
T Consensus 244 sSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTE 259 (346)
T ss_pred EcCCCeEEEEEeecCC
Confidence 9999999999988654
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=125.87 Aligned_cols=203 Identities=11% Similarity=0.144 Sum_probs=152.5
Q ss_pred CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe
Q 013881 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199 (434)
Q Consensus 120 ~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 199 (434)
+.++..+.||.+.+-+-. + +..+....|.++|.+-.|+|||.-|+|+++||.|++|.-... .-.
T Consensus 76 d~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRS------------- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-A-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRS------------- 139 (737)
T ss_pred ceEEEEcCCceEEEeccc-c-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHH-------------
Confidence 567778889988887643 3 667778899999999999999999999999999999985332 110
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
++......|+|++|.|+ .+++. .+.+.+=-+... ..+...+.|.+-|
T Consensus 140 ------------------------tl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n----~k~i~WkAHDGii 189 (737)
T KOG1524|consen 140 ------------------------TVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAAN----SKIIRWRAHDGLV 189 (737)
T ss_pred ------------------------HHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccc----cceeEEeccCcEE
Confidence 23445678999999988 45544 345555555544 4466788999999
Q ss_pred EEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecC
Q 013881 277 VSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 277 ~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
.++.|+ .+.+++|++|-..++||- .|+.+..-..|..+|++++|.++.++..+.-.+++ .....
T Consensus 190 L~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R-------------~~~p~ 255 (737)
T KOG1524|consen 190 LSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR-------------FSSPR 255 (737)
T ss_pred EEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccccceeeeeeeeee-------------ecCCC
Confidence 999998 468999999999999995 56777777889999999999965444333333444 22223
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
...+..++|++++. .+++|+..|.+.+=
T Consensus 256 ~GSifnlsWS~DGT---Q~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 256 VGSIFNLSWSADGT---QATCGTSTGQLIVA 283 (737)
T ss_pred ccceEEEEEcCCCc---eeeccccCceEEEe
Confidence 35688899988776 78888888877553
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=4.8e-14 Score=126.44 Aligned_cols=260 Identities=17% Similarity=0.214 Sum_probs=196.1
Q ss_pred EEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 113 LCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 113 ~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
+.+.+..+ .+++|+.-|.|-.+|..++ ++...+. -...|.++.|--+.+++|.+-. ..+.|||- .|..++.++.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeehhh
Confidence 44555333 4888999999999999997 7777776 3578999999877787777654 66999994 4666666666
Q ss_pred CCceEEEEe-CCCE-EEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 191 GGEVGCMIS-EGPW-IFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 191 ~~~~~~~~~-~~~~-l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
...+..+-+ .-.+ |++ +..|.++..|+.+++.+ .+..-.+.+..+.-+|- .+-+|...|+|.+|..... +
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk----e 284 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK----E 284 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc----c
Confidence 666655543 3333 333 44789999999999987 56666778888888887 8889999999999998887 7
Q ss_pred cceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEc-C
Q 013881 265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA-T 341 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~-~ 341 (434)
++..+..|.++|.+++++ |.++++.+.|..++|||++....+.++.. .-+...++++..-+++.+....|.||.- .
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDAL 363 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehhhh
Confidence 888888999999999996 67999999999999999999887776655 4566788888888888888889999942 2
Q ss_pred C--CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 342 D--SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 342 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
. +..-.....|.....|..+.|.|..+ +|-+|...|.-.|
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~ED---vLGIGH~~G~tsi 405 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYED---VLGIGHAGGITSI 405 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHH---eeeccccCCceeE
Confidence 2 12233444555556788888888766 5666655554333
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.1e-12 Score=115.45 Aligned_cols=249 Identities=10% Similarity=0.115 Sum_probs=176.5
Q ss_pred ccccEEEEEccCCC--CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec
Q 013881 149 HQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 149 h~~~V~~l~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
-...|+.++|.-++ ..|...+.|..+..+.+....+.... |++. ...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~--------------------------~~~~-----~~~ 102 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL--------------------------DDAK-----TVS 102 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc--------------------------cccc-----ccc
Confidence 44677778875443 44555556666777776665544321 1111 234
Q ss_pred CCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE---CCCEEEEecCC--CcEEEEeCC
Q 013881 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMD--NSIRVWNLE 301 (434)
Q Consensus 227 ~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d--g~i~vwd~~ 301 (434)
.....|..+......|+++..+|.+.+|....+...-.+...+..+ ..+..+.- ++..+++|+.. ..+.+||+.
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 4567788888888899999999999999988654221333334333 23333333 35578889998 899999999
Q ss_pred CCeEEEEEccc---------cccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 302 TLQCIQTLTEH---------TSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 302 ~~~~~~~~~~~---------~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
+.+.+.+-+.- .-.++++.|- ...|++++.-+.+++||.+.++.....+... +..+.++...|...
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn 260 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGN 260 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCc
Confidence 88666554321 1234566665 3589999999999999999776655444433 35677776666554
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCccccc-ccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGK-IFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|++|..-+.+..||+++++.... +.. .+.|++|..+|.+ +|++++-|..|||+|+++.+++
T Consensus 261 ---~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 261 ---FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ---EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 899999999999999999998887 443 7899999999999 9999999999999999996654
No 208
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=1.2e-13 Score=121.90 Aligned_cols=166 Identities=26% Similarity=0.352 Sum_probs=134.1
Q ss_pred cccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC
Q 013881 150 QKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 150 ~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~ 228 (434)
..+|..+.|.++.. .|+||+.|..|+||.+..++.-..- ..+. -.-.+..|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~-------------------------y~s~Ls~H 64 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVE-------------------------YLSSLSRH 64 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEE-------------------------EeecccCC
Confidence 36899999988766 9999999999999998765422100 0000 01157889
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC------------CCccccceeecCccceEEEEEEC--CCEEEEecCC
Q 013881 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------------TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (434)
Q Consensus 229 ~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~------------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 292 (434)
...|+.+.|+++ +|++|+.+|.|.+|....- ...+.....+.+|...|..++|. ++++++++.|
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 999999999999 9999999999999987611 11244556778899999999996 5589999999
Q ss_pred CcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 013881 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 343 (434)
..+++||+..|+.+..+..|...+..++|+ .+++++-+.|...+.+.+...
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence 999999999999999999999999999999 789999999998887766543
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2e-13 Score=121.25 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=134.9
Q ss_pred EEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 113 LCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 113 ~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
.++++.. ..+.+|+.||++|||+..+. ..+.....|.+.|.+|.|+||+++|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5667743 46888999999999998875 7777788899999999999999999999999 899999999966654331
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC------EE-EEEeCCCcEEEEEcCCCCCc-
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND------LL-FAGTQDGAILAWKFNVTTNC- 262 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~------~l-~~g~~dg~i~vwd~~~~~~~- 262 (434)
. .....+..+.|+.+ ++ +....-+.|..|++......
T Consensus 226 ~-----------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 226 F-----------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred c-----------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 1 11112222333222 12 22223345555554432210
Q ss_pred cccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEc--CCEEEEEeCCCcEEE
Q 013881 263 FEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~v 337 (434)
+-.......-...|.+++. +|++++.|+.||.|-|++..+.++++-.+ .|...|+.+.|. .+++++.+.|.++.|
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 0111222222335666666 58899999999999999999988877665 599999999998 468888888888888
Q ss_pred EEcCC
Q 013881 338 WFATD 342 (434)
Q Consensus 338 wd~~~ 342 (434)
..+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 86643
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1e-13 Score=125.03 Aligned_cols=281 Identities=17% Similarity=0.171 Sum_probs=201.6
Q ss_pred cccccccceEEEEE--eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC--CCCEEEEEECCCcEEEEEC
Q 013881 104 NRAVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 104 ~~~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~ 179 (434)
..+.|.+-|..+.| ..+.+++|+.|..|.+||...+...+.-..||...|..-.|-| +..-|++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 36788888888988 3446778999999999999988566666678999999999977 4567999999999999887
Q ss_pred CCCce-E---EEEecCCceEEEE--e--CCCEEEEEcCCcEEEEECCCCceE----EecCCCC---cEEEEEEeCC---E
Q 013881 180 ASGQC-A---GVINLGGEVGCMI--S--EGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVG---QVYAMAVGND---L 241 (434)
Q Consensus 180 ~~~~~-~---~~~~~~~~~~~~~--~--~~~~l~~~~~~~i~~w~~~~~~~~----~~~~~~~---~v~~l~~~~~---~ 241 (434)
..... . +...+.+++..+. + ...++.++.|+.+.-+|+...... ....+.. ..++++..|. .
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 54432 2 2223344444443 2 455667788999999998776532 2223333 5677777776 8
Q ss_pred EEEEeCCCcEEEEEcCCCCCc--------cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC--C------
Q 013881 242 LFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET--L------ 303 (434)
Q Consensus 242 l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~--~------ 303 (434)
+++|+.|..+++||.+.-... +.+..........|+++.++ +.-|++...|-.|+++.-.. +
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 999999999999998754321 11111112334568999997 45677778888999995332 2
Q ss_pred ----eEEEE-Ecccc--ccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 304 ----QCIQT-LTEHT--SVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 304 ----~~~~~-~~~~~--~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
..+.. +++|. ..|..+-|.| .|+++|+.-|.|.||+-.+.+.+.......+ -|.++.-+|.-+ +|
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~P---vL 451 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLP---VL 451 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCc---hh
Confidence 22233 67774 4578888884 6999999999999999888776665555443 577887777766 99
Q ss_pred EEEeCCCeEEEEeCCC
Q 013881 374 LCSCNDNSVRFYDLPS 389 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~ 389 (434)
|+++-|..|+||...+
T Consensus 452 AsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLT 467 (559)
T ss_pred hccCCccceeeecCCc
Confidence 9999999999998744
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-12 Score=126.24 Aligned_cols=228 Identities=13% Similarity=0.015 Sum_probs=149.2
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEE--EecCCceEEEEeCCC
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGV--INLGGEVGCMISEGP 202 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 202 (434)
+..|++||.+.. . .+.+..|...|...+|+|||+.|+.++.+ ..|++||+.+++.... +........+.+++.
T Consensus 183 ~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 578999998764 3 45677788899999999999999988754 3699999998864333 222222334556787
Q ss_pred EEEEE--cCCc--EEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccce
Q 013881 203 WIFIG--VTNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (434)
Q Consensus 203 ~l~~~--~~~~--i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 275 (434)
.|+.+ .++. |.+||+.++....+..+...+....|+|+ +++++..+|...+|+++..... ...+ .+...
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRGY 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCCC
Confidence 77664 3564 45567777777777778788889999998 4445557788899987654321 1112 22221
Q ss_pred EEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC--CCCceEEEee
Q 013881 276 VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT--DSGNLEVTYT 351 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~ 351 (434)
...+..++++|+..+.++ +.+||+.+++.......+. ...+.|+ +++|+.++.++.+.+|++. ++.....+..
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 223444577887777665 5569999887543322222 2334455 7899999999999888763 3444444443
Q ss_pred ecCCccEEEEEeccC
Q 013881 352 HNEEHGVLALCGMPD 366 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (434)
+. ..+...+|+|.
T Consensus 414 ~~--g~~~~p~wsp~ 426 (429)
T PRK01742 414 SD--GQVKFPAWSPY 426 (429)
T ss_pred CC--CCCCCcccCCC
Confidence 33 23555666653
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.52 E-value=6.3e-13 Score=111.13 Aligned_cols=248 Identities=19% Similarity=0.228 Sum_probs=157.6
Q ss_pred ccccceEEEEEeC-CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCC-cEEEEECCCCce
Q 013881 107 VIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQC 184 (434)
Q Consensus 107 ~~~~~i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg-~v~iwd~~~~~~ 184 (434)
.+...|+-+.-.+ +.+.+-+.|..+.+|++..+ .. ...|.-.++++-|.+.. +...+... ..-.++-+....
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s-~~---i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde 127 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYS-AF---ISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE 127 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCc-ce---EEEeeeeccccccccce--eccCCCcchhheecCCcccch
Confidence 4455677776655 77888999999999999875 22 23355566666665421 11111111 111111111111
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEcCCC
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~vwd~~~~ 259 (434)
++....+.... +.+-+- ......+.+.+..+.-+ ++++|.++|.+.+||+.++
T Consensus 128 ~h~~D~g~~tq----------------v~i~dd------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 128 THKQDGGDTTQ----------------VQIADD------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred hhhhccCccce----------------eEccCc------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 11111111100 000000 12234456666664332 7889999999999999986
Q ss_pred CCc------cccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCC--eE----EEEEccccccEEEEEEcCCE
Q 013881 260 TNC------FEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETL--QC----IQTLTEHTSVVMSLLCWDQF 325 (434)
Q Consensus 260 ~~~------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~--~~----~~~~~~~~~~v~~l~~~~~~ 325 (434)
+.. .+.......|..+|.++.++. +.=++|+.+..+..|++... .+ ..+++...-.-..+..+++.
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 322 123344557999999999974 35677888888999987642 22 12232222233456666899
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
+++++.|+.||||..++...+..+..|. ..+.+++|+|+.+ +++.++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~---lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCE---LMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCc---hhhhccCCceEEeeec
Confidence 9999999999999999999888888777 5699999998866 8999999999999986
No 213
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3.2e-12 Score=125.52 Aligned_cols=265 Identities=19% Similarity=0.223 Sum_probs=175.7
Q ss_pred cccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEe------cCcc--ccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL------EGHQ--KVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 108 ~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l------~~h~--~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
+-.+.+|..+.. ..+.++..-.|.++|+..+ ..+..+ ..|. +.+. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~-~~llag~gp~i~~yd~~s~-~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS-DYLLAGSGPEILVYDLSSG-CLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc-ceeeecCCCceEEeeCCch-hHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecch
Confidence 445777777766 4555566778999999876 433332 3340 0000 12334555554433333222
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEE-EEcCCcEEEEECCCCceEEecCCCCcEEE--E---EEeCC--EEEEEeCCCcE
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIF-IGVTNFVKAWNTQTNTDLSLSGPVGQVYA--M---AVGND--LLFAGTQDGAI 251 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~~w~~~~~~~~~~~~~~~~v~~--l---~~~~~--~l~~g~~dg~i 251 (434)
.-.. +..+...-.-..+..++..++ ...++.+.+||........-..+.....- . -++++ ++++|+.-+.|
T Consensus 79 ~~~~-~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 79 SNQI-IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred hhhh-hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccE
Confidence 1111 000000000012223444444 46688999999988877654444443321 1 22344 89999999999
Q ss_pred EEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEE-EEccccccEEEEEEcCCEEEE
Q 013881 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQ-TLTEHTSVVMSLLCWDQFLLS 328 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~~~~~l~s 328 (434)
.+|+.... .....+.+|.+.|.++.+ ++.++++.|+|.++|+|++.+.+... ..-+|++.|..+.+.++.+++
T Consensus 158 ivW~~~~d----n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t 233 (967)
T KOG0974|consen 158 IVWKPHED----NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIIT 233 (967)
T ss_pred EEEecccc----CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEE
Confidence 99999843 223378999999999999 68899999999999999999988776 667899999999999889999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
++.|-+.++|+.. ...+..+..|. ...+..+...+... ++++++.|+.+++|++..
T Consensus 234 ~gedctcrvW~~~-~~~l~~y~~h~-g~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVN-GTQLEVYDEHS-GKGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecc-cceehhhhhhh-hcceeEEEEcCCce---EEEeeccCcchhhhhhhc
Confidence 9999999999664 33344444333 34677777655444 899999999999999854
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=116.57 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=138.4
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEE
Q 013881 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT 308 (434)
Q Consensus 233 ~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~ 308 (434)
..++|+.+ .|++|+.||++++|+.... ..+.....|...|.++.|+ +..|++.+.| ..+||+++++..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 67777777 9999999999999997776 6677778899999999996 5589999999 999999999977776
Q ss_pred Eccc--cccEEEEEEc--C---C-EEEE-EeCCCcEEEEEcCCCCc---eEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 309 LTEH--TSVVMSLLCW--D---Q-FLLS-CSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 309 ~~~~--~~~v~~l~~~--~---~-~l~s-~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
.... ......+.|. + . ++++ ...-+.|+.||+..... ++..........+.+++.+.++ ++++.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG---kf~AlG 299 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG---KFLALG 299 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC---cEEEEe
Confidence 6532 2223444444 2 2 2222 22345666666543322 1111111222356677765544 499999
Q ss_pred eCCCeEEEEeCCCCccccccc--ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 377 CNDNSVRFYDLPSFAERGKIF--AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+.||.|.|++..+.+.+.... |...|+.+.|+||. ++++-+.|.++.|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999988777665 57789999999999 999999999999988765
No 215
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=8.7e-11 Score=111.55 Aligned_cols=259 Identities=18% Similarity=0.137 Sum_probs=169.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCceE-EEEeCCCEEEE-EcCCcEEEEECCCCceEEecCCCCcEE-EEEE
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-CMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVY-AMAV 237 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-~~~~~i~~w~~~~~~~~~~~~~~~~v~-~l~~ 237 (434)
.+..++.++.++.|.-+|..+|+.+-.+.....+. .....+..+++ ..++.+..+|.++++.+-.......+. ....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 36688889999999999999999988877765532 22234555555 568899999999988763222223332 2233
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceE-----EEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccc
Q 013881 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV-----VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH 312 (434)
Q Consensus 238 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 312 (434)
..+.++.++.++.|+.+|.+++.. +.......... .+....++.++.+..++.+..+|+++++.+.+....
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 455888888999999999988743 22222111110 111223467888889999999999999877654321
Q ss_pred cc-----------cEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 313 TS-----------VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 313 ~~-----------~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
.. ........++.+++++.++.+..||..+++.+....... ..... -.++ .+++++.||.
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~----~~~~-~vyv~~~~G~ 290 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA----VDDN-RLYVTDADGV 290 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce----EeCC-EEEEECCCCe
Confidence 00 011223347788889999999999998876544332111 11111 1122 6777889999
Q ss_pred EEEEeCCCCcccccccc-cC-cEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 382 VRFYDLPSFAERGKIFA-KQ-EIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~-~~-~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|..+|..+++.+..... .. ........ ++.|++++.+|.|+++|..+|+++
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 99999999987765522 11 22222221 238889999999999999999864
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.46 E-value=9.1e-12 Score=107.07 Aligned_cols=200 Identities=14% Similarity=0.126 Sum_probs=160.1
Q ss_pred CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEEEEeCCC
Q 013881 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 302 (434)
....+|++.+|+++ .++++.....|.||.....+ .+++..++..|...|+.+.|.+ +.|++++.|..-++|....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 34578999999999 89999999999999987653 3578899999999999999974 5899999999999999843
Q ss_pred ---CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEE--EeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 303 ---LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEV--TYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 303 ---~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
.++.-.+..+....+++.|+ ++.|++|+.-..|.||-++....-.. .........+.++.|+|+.- +|++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV---Llaa 163 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV---LLAA 163 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc---eecc
Confidence 34556677889999999998 78999999999999998876544321 12233346789999988766 8999
Q ss_pred EeCCCeEEEEeC-----CC-------------Ccccccc-cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 376 SCNDNSVRFYDL-----PS-------------FAERGKI-FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 376 ~~~dg~i~iwd~-----~~-------------~~~~~~~-~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
|+.|+..++|.. +. ++++.++ ...+.|..+.|+|+| .|+-.+.|+++.+=|....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 999999999864 11 2233333 346779999999999 9999999999999887654
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=6.2e-12 Score=123.55 Aligned_cols=264 Identities=17% Similarity=0.177 Sum_probs=169.5
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceE-------EEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-------CMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
+++++.++-. ++|+.|.. -.|.++|+..+..+..+....-.. .....+.++.+...+.+..-........
T Consensus 8 ~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~ 84 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIE 84 (967)
T ss_pred ccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhh
Confidence 4445555533 56665544 459999999886554433211100 0011222333333333322222211111
Q ss_pred EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceE--E-EE--EEC--CCEEEEecCCCcEE
Q 013881 224 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV--V-SL--VVG--ANKLYSGSMDNSIR 296 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v--~-~l--~~~--~~~l~s~s~dg~i~ 296 (434)
.+..+... ..+.+....++.++.++.+.+||..... ...... +...+ . ++ -.+ .=++++|+.-+.|.
T Consensus 85 ~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ii 158 (967)
T KOG0974|consen 85 RFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSS----VLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEII 158 (967)
T ss_pred hccccccc-cchhhhcceEEEEEcCceEEEEecccCc----eehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEE
Confidence 12222111 2233333389999999999999988763 222222 22111 1 11 112 33789999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceE-EEeeecCCccEEEEEeccCCCCCcEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLE-VTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
+|+...-+.-..+.+|.+.|.++.++ +.++++.|+|.++++|++.+.+... ..+.|. ..+..+++.++ .+
T Consensus 159 vW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--aRvw~~~~~~n-----~i 231 (967)
T KOG0974|consen 159 VWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--ARVWACCFLPN-----RI 231 (967)
T ss_pred EEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc--ceeEEEEeccc-----ee
Confidence 99987544444688999999999995 8999999999999999999887666 334444 56888888765 59
Q ss_pred EEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
++++.|-+.++|+....+......| ...|..++..++. .++|++.||.+++|++..-
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999997765444322234 5679999999999 9999999999999998653
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=6.2e-13 Score=121.46 Aligned_cols=135 Identities=19% Similarity=0.334 Sum_probs=106.6
Q ss_pred cccceEEEEEeCC---cEEEecCCCeEEEEeCCC--------------C--c-----------eEEEEecCccccEEEEE
Q 013881 108 IKTDILCRNWVQG---NCMYGEKCKFLHSWTVGD--------------G--F-----------KLLTQLEGHQKVVSGIT 157 (434)
Q Consensus 108 ~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~--------------~--~-----------~~~~~l~~h~~~V~~l~ 157 (434)
.+..++|+.|.++ .++.+-.+|.++++|..- + + .++..+.--++.|...+
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 3479999999443 355555899999996531 0 0 11222222345788999
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE
Q 013881 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV 237 (434)
Q Consensus 158 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~ 237 (434)
|+|||++||+.+.||.+||+|..+.+++.. +...-+...|++|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------------------------------------mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGV-------------------------------------MKSYFGGLLCVCW 340 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHH-------------------------------------HHhhccceEEEEE
Confidence 999999999999999999999988776543 3344567889999
Q ss_pred eCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC
Q 013881 238 GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283 (434)
Q Consensus 238 ~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 283 (434)
+|| +|++|++|--|.||.+... +.+..-++|...|..++|++
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence 999 9999999999999999987 78888899999999999997
No 219
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.45 E-value=4.3e-10 Score=107.31 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=190.2
Q ss_pred EeCCcEEEecCCCeEEEEeCCCCceEEEEecCccc--cEE-----EEEccC--CCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK--VVS-----GITLPS--GSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 117 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~--~V~-----~l~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
...+.+++++.++.|+.+|..+| +.+...+-... .+. .+.-.| ++..++.++.++.+.-+|.++|+.+-.
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 35678888888999999999998 66665543220 000 001111 456778888999999999999999888
Q ss_pred EecCCceEE--EEeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCc-----EEEEEEeCCEEEEEeCCCcEEEEEcCCC
Q 013881 188 INLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQ-----VYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 188 ~~~~~~~~~--~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~-----v~~l~~~~~~l~~g~~dg~i~vwd~~~~ 259 (434)
.+....+.+ +..++.+++...++.+..+|.++++.+ ........ ..+-....+.++.++.+|.+..+|..++
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 877655433 223555555556889999999999876 33221110 0112223457778889999999998887
Q ss_pred CCccccceee-c-Ccc----ce-EEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCC
Q 013881 260 TNCFEPAASL-K-GHS----LA-VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLD 332 (434)
Q Consensus 260 ~~~~~~~~~~-~-~h~----~~-v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~d 332 (434)
...++..... . .+. .. ..+-...++.++.++.+|.+..+|+.+++.+...... ....+...++.++.++.+
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~~ 303 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQN 303 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcCC
Confidence 5432211000 0 000 00 0111234677888888999999999999887655321 222345568888889999
Q ss_pred CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEE-EEecCC
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRA-IQLGPG 410 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~-~~~spd 410 (434)
+.+..+|..+++.+......... ...+... .++ .|+.++.||.|++.|..+++.+.+... ...+.+ ..+ .+
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v----~~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~ 376 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHR-LLTAPVL----YNG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-AD 376 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCC-cccCCEE----ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-EC
Confidence 99999999887654332211111 0111111 122 678889999999999999988876643 222322 122 24
Q ss_pred cEEEEeCCCCCEEEEEc
Q 013881 411 GLFFTGDGTGQVRVWQW 427 (434)
Q Consensus 411 g~l~s~~~dg~i~iwd~ 427 (434)
+.|+.++.||.|+.++.
T Consensus 377 ~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 377 DKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCceEEEEeC
Confidence 48888999999998765
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=9.7e-12 Score=109.62 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=154.9
Q ss_pred cccceEEEEEeCCcEEEecCCCeEEEEeCCCC---ceEEEEecCccccEEEEEccCCCC-EEEEEECC--CcEEEEECCC
Q 013881 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKD--ETVRVWDCAS 181 (434)
Q Consensus 108 ~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~---~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~d--g~v~iwd~~~ 181 (434)
...+|.-+...++.++++..+|.+.+|..+.+ ...+..+..+ ..+..|.-++... .+++|+.. ..++|||++.
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 34577778888999999999999999999843 1344445544 5666777766544 55668988 8899999988
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~ 257 (434)
.+.+..-+. ... ..| +=.|-+ .++++.|-+. .|++++.-+.+++||.+
T Consensus 183 ~~qiw~aKN--vpn------D~L----~LrVPv----------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 183 SKQIWSAKN--VPN------DRL----GLRVPV----------------WITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred ceeeeeccC--CCC------ccc----cceeee----------------eeccceecCCCCCceEEEEecceeEEEecCc
Confidence 754432211 000 000 001122 3445556433 89999999999999998
Q ss_pred CCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEE-EccccccEEEEEEcCC--EEEEEeCC
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCWDQ--FLLSCSLD 332 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~~~--~l~s~s~d 332 (434)
.+. +++..+.--..+++++.. +++++++|..-+.+..||++.++.+.. +.+..+.|.++..++. ++++++.|
T Consensus 235 ~qR---RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 235 HQR---RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred ccC---cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 764 667776655666666554 688999999999999999999998877 8899999999999954 99999999
Q ss_pred CcEEEEEcCCCCceEEEee
Q 013881 333 KTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~ 351 (434)
..|||+|+.+.+.+...+.
T Consensus 312 RyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 312 RYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred eeEEEeecccchhhhhhhh
Confidence 9999999998655544443
No 221
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=4.2e-10 Score=104.87 Aligned_cols=238 Identities=14% Similarity=0.168 Sum_probs=138.3
Q ss_pred ceEEEEEeCCc--EEEe-cCCCeEEEEeCC-CC-ceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCce
Q 013881 111 DILCRNWVQGN--CMYG-EKCKFLHSWTVG-DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQC 184 (434)
Q Consensus 111 ~i~c~~~~~~~--~~~g-~~d~~i~vwd~~-~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~ 184 (434)
....+.++++. ++.+ ..++.|.+|++. ++ .+.+.... ..+....|+|+|++++|++++. ++.|.+|++.+...
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 34456776543 3333 357899999987 33 12233332 3345678999999999988875 78999999864321
Q ss_pred E-EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCCC
Q 013881 185 A-GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~~ 260 (434)
+ ... ....+......++++|+ ++ ++...++.|.+||+....
T Consensus 115 ~~~~~-----------------------------------~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 115 PVAPI-----------------------------------QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCCce-----------------------------------eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 1 110 00111233556778877 44 556677999999997632
Q ss_pred Cccc---cceeecCccceEEEEEEC--CCEEEEecC-CCcEEEEeCCC--C--eEEEEEcccc------ccEEEEEEc--
Q 013881 261 NCFE---PAASLKGHSLAVVSLVVG--ANKLYSGSM-DNSIRVWNLET--L--QCIQTLTEHT------SVVMSLLCW-- 322 (434)
Q Consensus 261 ~~~~---~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~--~--~~~~~~~~~~------~~v~~l~~~-- 322 (434)
.... ....... ......+.++ +++++++.. +++|.+||+.. + +.++.+.... .....+.++
T Consensus 160 ~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 1100 0011111 1223455554 568877765 89999999973 2 3344443221 112245555
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCCceEEEeee-cCCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCC
Q 013881 323 DQFLLSCSL-DKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLP 388 (434)
Q Consensus 323 ~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 388 (434)
+++++++.. ++.|.+|++........+..+ ........+.+++++. +|+++. .+++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK---YLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC---EEEEEEccCCcEEEEEEc
Confidence 678888754 789999999765432222222 1112233566665443 666555 48999999875
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=1e-11 Score=113.68 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=134.9
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceee--cCccceEEEEEEC---CCEEEEecCCCcEEEEeCCC-------------
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET------------- 302 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~------------- 302 (434)
-|++|-.-|.|.+.|...... ..+... .-....|+++.|- ...++.+-.+|.++++|..-
T Consensus 187 dllIGf~tGqvq~idp~~~~~--sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEV--SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred ceEEeeccCceEEecchhhHH--HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 688888889999998765311 111111 1234678999983 45788888999999997631
Q ss_pred -Ce--------------EEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEecc
Q 013881 303 -LQ--------------CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 303 -~~--------------~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
+. ++..+.--++.|..++|+ +++|++.+.||.+||||..+.+.+-.....- ...++++|+|
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--GGLLCvcWSP 342 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--GGLLCVCWSP 342 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--cceEEEEEcC
Confidence 11 111122234466677776 7899999999999999998766544333322 4689999988
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecC-----------------------------------
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGP----------------------------------- 409 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp----------------------------------- 409 (434)
++. +|++|++|.-|.||.+...+.+..-. |+..|..++|.|
T Consensus 343 DGK---yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 343 DGK---YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred Ccc---EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 776 99999999999999999988887754 688899999872
Q ss_pred -------------Cc-EEEEeCCCCCEEEEEccCCcc
Q 013881 410 -------------GG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 410 -------------dg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.. .|.+.+.|-.+.+||+....+
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 12 577888999999999987654
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.41 E-value=1.5e-11 Score=122.67 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=154.7
Q ss_pred EECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc---cccceeecCccceEEEE--EECCCEE
Q 013881 215 WNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSL--VVGANKL 286 (434)
Q Consensus 215 w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~h~~~v~~l--~~~~~~l 286 (434)
|+++......+..|...+..++.+++ ++++|+.||+|++|+.+..... ++...++......+.++ ...++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 66666666678889999999988766 8999999999999998754221 22222333233444444 4568899
Q ss_pred EEecCCCcEEEEeCCCC-------eEEEEEccc-cccEEEE-EEc---CC-EEEEEeCCCcEEEEEcCCCCceEEEeeec
Q 013881 287 YSGSMDNSIRVWNLETL-------QCIQTLTEH-TSVVMSL-LCW---DQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~~-------~~~~~~~~~-~~~v~~l-~~~---~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
+.++.||.|++.++... .+.+....+ .+.+.++ ++. .. .++.+..-+.|..||++............
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998762 112222222 2233333 332 33 78888889999999999888777777777
Q ss_pred CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecC---Cc--EEEEeC-CCCCEEEE
Q 013881 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGP---GG--LFFTGD-GTGQVRVW 425 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp---dg--~l~s~~-~dg~i~iw 425 (434)
....+.+++..|... ++++|+..|.+.+||++-..++....+ ..+|+.+..+| .. .+.++. ..+.|.+|
T Consensus 1194 ~hG~vTSi~idp~~~---WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cccceeEEEecCCce---EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 777899998877655 999999999999999998888887765 56677666654 33 444555 68899999
Q ss_pred EccCCc
Q 013881 426 QWCNGP 431 (434)
Q Consensus 426 d~~~g~ 431 (434)
++.+|.
T Consensus 1271 n~~~g~ 1276 (1431)
T KOG1240|consen 1271 NMETGL 1276 (1431)
T ss_pred ecccCc
Confidence 999885
No 224
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=3.8e-09 Score=96.56 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=152.4
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC----------CCcEEEEECCCCceEEEEecCCc-----
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE----- 193 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~----- 193 (434)
+.|.+.|..+. +.+..+..-..+-. + ++||++.|+.+.. +..|.+||+.+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999999997 88888875444433 4 9999999887765 78999999999999999987654
Q ss_pred -----eEEEEeCCCEEEEEc---CCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccc-
Q 013881 194 -----VGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE- 264 (434)
Q Consensus 194 -----~~~~~~~~~~l~~~~---~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~- 264 (434)
...+.++++++++.. +..|.+.|+.+++.+....-.+...-+..++....+-+.||......+........
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 445567888888754 67999999999988743222222222223333333334555544443333211000
Q ss_pred cceeecCccceEE---EEEE-CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEc
Q 013881 265 PAASLKGHSLAVV---SLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 265 ~~~~~~~h~~~v~---~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 340 (434)
....+.....++. .+.. ++.+++.... |+|.+.|+...+..
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~---------------------------------- 228 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK---------------------------------- 228 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce----------------------------------
Confidence 0000000000000 0111 2223333222 44444443221110
Q ss_pred CCCCceEEEee-----ecCCccEEEEEeccCCCCCcEEEE-E---------eCCCeEEEEeCCCCcccccccccCcEEEE
Q 013881 341 TDSGNLEVTYT-----HNEEHGVLALCGMPDSEGKPVLLC-S---------CNDNSVRFYDLPSFAERGKIFAKQEIRAI 405 (434)
Q Consensus 341 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~-~---------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 405 (434)
.......+.. .-.......++++++.. .+++ . ...+.|.++|..+++.+..+.....+..+
T Consensus 229 -~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i 304 (352)
T TIGR02658 229 -FLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI 304 (352)
T ss_pred -ecceeeeccccccccccCCCcceeEEEcCCCC---EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE
Confidence 0000000000 00112222355554433 3333 2 12258999999999999999888999999
Q ss_pred EecCCc--EEEEeC-CCCCEEEEEccCCccc
Q 013881 406 QLGPGG--LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 406 ~~spdg--~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
+++||+ +|++.. .++.|.++|..+++++
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999999 555444 6889999999998765
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=5.1e-12 Score=115.82 Aligned_cols=171 Identities=17% Similarity=0.258 Sum_probs=121.8
Q ss_pred ccccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEe-cCccccEEEEEccC--CCCEEEEEECCCcEEEE
Q 013881 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPS--GSDKLYSGSKDETVRVW 177 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iw 177 (434)
.....|.+=|+|+.|..++ ++.|+.|-.+.|||...- ++++.+ .||...|.++.|-| +.+.++||..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4467889999999995543 566889999999999965 666665 58999999999988 56789999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
|+...+.-..-.... ........|..+|..|+..|+ .+.++++||+|+-+
T Consensus 123 dl~~~~~~~~d~~~~---------------------------~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGME---------------------------ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred ecccccccccccCcc---------------------------chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence 998633211000000 000124567888888888666 89999999999999
Q ss_pred EcCCCCCccc------cceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCC
Q 013881 255 KFNVTTNCFE------PAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 255 d~~~~~~~~~------~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~ 301 (434)
|++....+.. ....+...-....++..+ +.+|++|+.|-..++||.+
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 9997532211 111112222344566665 4589999999999999964
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=2.8e-11 Score=105.08 Aligned_cols=308 Identities=19% Similarity=0.233 Sum_probs=188.0
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCC----ceEEEEe-cC
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG----QCAGVIN-LG 191 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~-~~ 191 (434)
....+++.+.|.+++||--.+..+.-..+. .-..+++++++.++...|+.|-..|++.-+.+... ..++.+. +.
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh
Confidence 346799999999999996554324333332 23578999999999999999999999999877543 2222222 22
Q ss_pred CceEEEEe--CCCEEEEEcCCcEEEEE-CCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 192 GEVGCMIS--EGPWIFIGVTNFVKAWN-TQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 192 ~~~~~~~~--~~~~l~~~~~~~i~~w~-~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
..+..+.+ ...+++....+.-..|. .+.+..+--.......+++.+.-.+.+.|...|.|.+..+..... .++..
T Consensus 115 ~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~--~~i~~ 192 (404)
T KOG1409|consen 115 ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGC--QLITT 192 (404)
T ss_pred cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCC--ceEEE
Confidence 33444433 34455544433333333 233322200000001111111111667777888888877765433 67889
Q ss_pred ecCccceEEEEEECC--CEEEEecCCCcEEEEeCCCCe-EEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 013881 269 LKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 269 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 343 (434)
+.+|...+.++.|++ ..|++|..|..+.+||+.-.+ ....+.+|...|..+..- -+.+++++.||.|.+|+++..
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999999999999985 479999999999999997544 346677899999888776 578999999999999998654
Q ss_pred CceEEEee-----------------------------ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC-------
Q 013881 344 GNLEVTYT-----------------------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL------- 387 (434)
Q Consensus 344 ~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------- 387 (434)
........ |.-..--.+++....+... ...+-+..-.+++-|.
T Consensus 273 r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~-~~p~mg~e~~vR~~~~c~~~i~~ 351 (404)
T KOG1409|consen 273 RVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS-SYPTMGFEFSVRVCDSCYPTIKD 351 (404)
T ss_pred eecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc-ccccccceeEEEEecccchhhhc
Confidence 32111000 0000000111111111111 1222223334554443
Q ss_pred -CCCcccccc-cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 388 -PSFAERGKI-FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 388 -~~~~~~~~~-~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+. .++... ..+..|+++.+..+- +|+|++.|..|+|||+..
T Consensus 352 ~~~-t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 352 EER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred CCC-CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 22 112221 126679999998877 999999999999999864
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=6e-11 Score=114.23 Aligned_cols=204 Identities=16% Similarity=0.076 Sum_probs=132.3
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCC---CcEEEEEcCCCCCccccceeecCccceEEEEEE--C
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--G 282 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 282 (434)
..|.+||........+..+...+.+..|+|+ .|+..+.+ ..|++||+.++.. +.+..+.+|.. .+.| +
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~---~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNG---APAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccC---ceeECCC
Confidence 4677888877666667788888999999999 66665543 4699999987632 22333444433 3455 5
Q ss_pred CCEEEEe-cCCCcEEE--EeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceEEEeeecCCc
Q 013881 283 ANKLYSG-SMDNSIRV--WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNEEH 356 (434)
Q Consensus 283 ~~~l~s~-s~dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~ 356 (434)
++.|+.+ +.+|.+.| ||+.+++ +..+..+...+....|+ ++.|+..+ .++...||++...........+. .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~--~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR--G 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC--C
Confidence 6677665 46776555 5666655 45566677777778887 56666554 57888999875433222222221 1
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
....++|++. .|+..+.++ +.+||+.+++....... .....+.|+||| +|+.++.++.+.+|.+.
T Consensus 336 --~~~~~SpDG~---~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 --YSAQISADGK---TLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred --CCccCCCCCC---EEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 2345665544 677766654 56699988765432222 233567899999 99999889988888863
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=2.4e-10 Score=98.82 Aligned_cols=293 Identities=13% Similarity=0.112 Sum_probs=183.2
Q ss_pred cceEEEEEeCCc---EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEE-EEEECCCcEEEEECCCCceE
Q 013881 110 TDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 110 ~~i~c~~~~~~~---~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~ 185 (434)
+.|.-+.|..+. +.....++.|.+|++... +-...+..-..++.+++|||||+.| .+..-|-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 466778886654 334668899999999987 7788888888999999999999655 55666899999999988766
Q ss_pred EEEecCC--ceEEEEeCCCEEEEEcCC----cEEEEECCCCceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCC
Q 013881 186 GVINLGG--EVGCMISEGPWIFIGVTN----FVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 186 ~~~~~~~--~~~~~~~~~~~l~~~~~~----~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~ 258 (434)
..-.... ...++..++++.+..... .+.+..-+.-..+ .+.-.+-..+.+.|+|+ +..+.+||---
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~L 200 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVL 200 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchh
Confidence 5443333 344445577777765432 2222111111111 23334556678889886 23345666432
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEE-----------------------------
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQ----------------------------- 307 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~----------------------------- 307 (434)
.. +. .. -.-.-.+..+.|+ +++|+.|+.|+.+|+.+--+.+.+.
T Consensus 201 ey---kv-~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 201 EY---KV-YA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred hh---ee-ee-eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 21 11 11 1112346667776 4689999999999987643221110
Q ss_pred -------------------------------EEc------cccccEEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCce
Q 013881 308 -------------------------------TLT------EHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATDSGNL 346 (434)
Q Consensus 308 -------------------------------~~~------~~~~~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~ 346 (434)
.++ ...-.+.-++|+ ..++++-.. -..+-+||++..+..
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence 011 112234456666 334444332 256899999765443
Q ss_pred EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCC
Q 013881 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQ 421 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~ 421 (434)
..+. ....+.+..|.|..+ .|+.......+++|.......+..-...-.|..+.|..+| .++..+.|..
T Consensus 356 avLi---Qk~piraf~WdP~~p---rL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 356 AVLI---QKHPIRAFEWDPGRP---RLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhhh---hccceeEEEeCCCCc---eEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 3322 234588888877655 4565655677999988775555554455679999999999 8888887753
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.34 E-value=1.8e-10 Score=99.63 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=170.8
Q ss_pred EEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE--eCCCEEEEE--cCCcEEEEECCCCceE-EecCCCC
Q 013881 156 ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPVG 230 (434)
Q Consensus 156 l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~i~~w~~~~~~~~-~~~~~~~ 230 (434)
.+|||+|+++|+.+.- .+.|-|.++-+..+.+..-..+..+. .+..++.++ .++.|.+|++...+-. .+.....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 6799999999999887 78889988877665554433333332 244444443 3679999999988876 7778889
Q ss_pred cEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecC----------------
Q 013881 231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM---------------- 291 (434)
Q Consensus 231 ~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~---------------- 291 (434)
.+.+++|+|+ +|.+...+-.|.+|.+.+... .......|.....++..++++.+..+.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~---~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG---YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee---EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 9999999999 788888999999999987632 111122233333333334444333322
Q ss_pred --------------------CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc----
Q 013881 292 --------------------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN---- 345 (434)
Q Consensus 292 --------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~---- 345 (434)
+..+.+||---.-.+..+ .-.-.+..++|+ +++|++|+.|+.+||.+--+-+.
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 122344442111111111 112456677777 68999999999998853211000
Q ss_pred -----------------------------------------------------eEEEee-------ecCCccEEEEEecc
Q 013881 346 -----------------------------------------------------LEVTYT-------HNEEHGVLALCGMP 365 (434)
Q Consensus 346 -----------------------------------------------------~~~~~~-------~~~~~~~~~~~~~~ 365 (434)
...+.. ......+--++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 000000 00012334456655
Q ss_pred CCCCCcEEEEEeC--CCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 366 DSEGKPVLLCSCN--DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 366 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
++. ++++-.. -+.+-+||++..+....+..+.+|.+..|.|.. .|+.+.....+++|...-
T Consensus 329 Ds~---y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 329 DST---YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred Cce---EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 544 6666532 257899999998888888889999999999999 888888888899997653
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.3e-09 Score=96.79 Aligned_cols=305 Identities=11% Similarity=0.125 Sum_probs=192.9
Q ss_pred eEEEEEeC-CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-----ECC-----CcEEEEECC
Q 013881 112 ILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-----SKD-----ETVRVWDCA 180 (434)
Q Consensus 112 i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-----s~d-----g~v~iwd~~ 180 (434)
.+..++++ +.+++-+.+..+.|++...+ ..+.+...- .++++.|+|-+.+|.|- ..+ -.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~-~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATL-KVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCC-cEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 33445544 55677778889999999987 344433322 88999999999998863 223 347799999
Q ss_pred CCceEEEEecCCce---EEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEE-----EeCC
Q 013881 181 SGQCAGVINLGGEV---GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFA-----GTQD 248 (434)
Q Consensus 181 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----g~~d 248 (434)
++.....+.....- ..+..+..+.+--..+.+.+|+........-.-|...|..+.++|. .+++ .+.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 96554444433221 1122233343335578999999988666666667888888888876 3332 3455
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CC-EEE--EecCC---------CcEEEEeCCCCeEEEEEccccc
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN-KLY--SGSMD---------NSIRVWNLETLQCIQTLTEHTS 314 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~--s~s~d---------g~i~vwd~~~~~~~~~~~~~~~ 314 (434)
..|++|.+...... .++..-.-....-..+.|+ +. +|+ +..-| .++++.++....+.-.+ .-.+
T Consensus 194 a~vri~~~~~~~~~-~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~G 271 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQH-QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEG 271 (566)
T ss_pred cEEEEecccccccc-chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCC
Confidence 67999987632110 1111111112223456665 22 333 22223 36888888744443333 4579
Q ss_pred cEEEEEEc--CCEEE--EEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC---CCeEEEEeC
Q 013881 315 VVMSLLCW--DQFLL--SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDL 387 (434)
Q Consensus 315 ~v~~l~~~--~~~l~--s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~ 387 (434)
+|.++.|+ +..++ -|-.--.+.|||++-. .+ +... +..-..+.|+|.+. +|+.++- -|.|-|||+
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v---~df~-egpRN~~~fnp~g~---ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PV---FDFP-EGPRNTAFFNPHGN---IILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCC-Ee---EeCC-CCCccceEECCCCC---EEEEeecCCCCCceEEEec
Confidence 99999998 44333 3556788999998643 11 1211 23456677777655 7776664 478999999
Q ss_pred CCCcccccccccCcEEEEEecCCc-EEEEeCC------CCCEEEEEccCC
Q 013881 388 PSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG------TGQVRVWQWCNG 430 (434)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~------dg~i~iwd~~~g 430 (434)
.+.+++..+..... +-+.|+||| +|+|+.. |+.++||++...
T Consensus 344 ~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 344 PNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 99888888776544 457999999 8888763 788999998643
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.31 E-value=8.5e-10 Score=103.06 Aligned_cols=273 Identities=13% Similarity=0.105 Sum_probs=165.4
Q ss_pred EEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCCCceEEEEecC
Q 013881 115 RNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 115 ~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
+.++++ .++..+.|+.|.++|+.+. +.+.+++... .-.++++|+||++++++. .++.+.++|.++.+.++.+...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 456553 3666778999999999998 8888888654 457799999999998775 6899999999999999988754
Q ss_pred C--------ceEEEE--eCCC-EEEEEcC-CcEEEEECCCCceE--EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 192 G--------EVGCMI--SEGP-WIFIGVT-NFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 192 ~--------~~~~~~--~~~~-~l~~~~~-~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
. .+..+. +... +++...+ +.|-+.|......+ .............|+++ ++++...+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 2 233443 2444 5555554 67878887665433 33344556778899988 45556677899999
Q ss_pred EcCCCCCccccceee----cCccceEE-----------EEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEE
Q 013881 255 KFNVTTNCFEPAASL----KGHSLAVV-----------SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319 (434)
Q Consensus 255 d~~~~~~~~~~~~~~----~~h~~~v~-----------~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 319 (434)
|..+.. ....+ ..|..++. ...-.+...++.-....+.+||..+.+.++++...... .-+
T Consensus 200 D~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 200 DTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp ETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred eeccce----EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 988763 22222 12333332 22222333333333346678999999999999887666 444
Q ss_pred EEc--CCEEEEE----eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC-eEEEEeCCCCcc
Q 013881 320 LCW--DQFLLSC----SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN-SVRFYDLPSFAE 392 (434)
Q Consensus 320 ~~~--~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~ 392 (434)
..+ ++++.+. ...++|.++|.++.+....+..... ..+..+.|.+++. .+.++.-..+ .|.+||..+.++
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~-~~~~h~ef~~dG~--~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG-KRVVHMEFNPDGK--EVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE-TTSS--EEEEEEE--TTEEEEEETTTTEE
T ss_pred ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC-CcEeccEECCCCC--EEEEEEecCCCEEEEEECCCcEE
Confidence 444 6788877 4468999999988744333322221 2377777776654 2333333333 899999999998
Q ss_pred ccccc
Q 013881 393 RGKIF 397 (434)
Q Consensus 393 ~~~~~ 397 (434)
+.++.
T Consensus 352 ~~~i~ 356 (369)
T PF02239_consen 352 KKRIP 356 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=8.1e-10 Score=106.63 Aligned_cols=227 Identities=14% Similarity=0.019 Sum_probs=136.7
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEEEecCCceEEEEeCCCEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (434)
..|.+||.... ..+.+..|...+...+|+||++.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------------- 242 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------------- 242 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------------
Confidence 46899998643 334566677889999999999999988743 368888887765432
Q ss_pred EEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCC--cEEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
+....+...+..|+|+ ++++.+.+| .|++||+.++. ...+..+........
T Consensus 243 -------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~ 298 (433)
T PRK04922 243 -------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-----LTRLTNHFGIDTEPT 298 (433)
T ss_pred -------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-----eEECccCCCCccceE
Confidence 1222233446788887 344555555 58999987752 233334443344556
Q ss_pred EC--CCEEEEec-CCCc--EEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceEEEe
Q 013881 281 VG--ANKLYSGS-MDNS--IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK---TIKVWFATDSGNLEVTY 350 (434)
Q Consensus 281 ~~--~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg---~i~vwd~~~~~~~~~~~ 350 (434)
|+ ++.|+..+ .+|. |+++|+.+++.. .+..+.......+|+ +++|+..+.++ .|.+||+.++... .+.
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 64 56666555 4444 777787776543 232233334445665 77887765443 5999998766543 222
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeC---CCeEEEEeCCCCccccccc-ccCcEEEEEecC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSFAERGKIF-AKQEIRAIQLGP 409 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 409 (434)
... ......|++++. +|+..+. ...|.++++... ....+. +.+.+...+|+|
T Consensus 377 -~~~--~~~~p~~spdG~---~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 377 -PGS--LDESPSFAPNGS---MVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCC--CCCCceECCCCC---EEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 111 223456665544 5555554 246888888643 333333 345677777876
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.7e-09 Score=103.93 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=136.2
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC---CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (434)
..|.+||.+.. .. +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++....
T Consensus 179 ~~l~~~d~dg~-~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l------------------ 238 (429)
T PRK03629 179 YELRVSDYDGY-NQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------ 238 (429)
T ss_pred eeEEEEcCCCC-CC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc------------------
Confidence 37899998754 22 334456778999999999999987643 34688888877653321
Q ss_pred EEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEE-EEeCCC--cEEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
......+....|+|+ .|+ +.+.+| .|++||+.++. ...+..+...+....
T Consensus 239 --------------------~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-----~~~lt~~~~~~~~~~ 293 (429)
T PRK03629 239 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPT 293 (429)
T ss_pred --------------------cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-----EEEccCCCCCcCceE
Confidence 112223345788888 444 445455 48888987652 223333334455666
Q ss_pred EC--CCEEEEecC-CC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceEEEe
Q 013881 281 VG--ANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 281 ~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~ 350 (434)
|+ ++.|+..+. ++ .|+++|+.+++. ..+..+........++ +++|+..+.+ ..|.+||+.++... .+.
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 65 566765554 34 455557776654 3343333444455555 6777776543 35888998766533 222
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCe---EEEEeCCCCccccccc-ccCcEEEEEecCC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNS---VRFYDLPSFAERGKIF-AKQEIRAIQLGPG 410 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~-~~~~v~~~~~spd 410 (434)
.. .......|+|++. +|+.++.++. +.++++.... ...+. +.+.+...+|+|-
T Consensus 372 ~~---~~~~~p~~SpDG~---~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 372 DT---FLDETPSIAPNGT---MVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CC---CCCCCceECCCCC---EEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCCC
Confidence 21 1123455665544 7777776653 6777875433 33333 4677888888873
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.6e-09 Score=100.35 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=181.7
Q ss_pred ceEEEEEeCCc---EEEecCCCeEEEEeCCCCceEEEEecCcc--ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 111 DILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 111 ~i~c~~~~~~~---~~~g~~d~~i~vwd~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
.-+-+..++++ +.+|..--.|++||+..- -..|.-|. ..|.-.-++.|-..++---.|.+|-+..-......
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 34444555554 344556779999998853 23344453 45555556667666777777777776653322111
Q ss_pred EEEecCCceEEE-EeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 186 GVINLGGEVGCM-ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
..+...+.-.+. .+...+++++....|+-++++.|..+ .+....+.++++..++. +|++|+.+|.|.+||.+....
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 111111111222 24566778888889999999999987 45555688999999887 899999999999999987642
Q ss_pred c--cccceeecCccc-----eEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEcC---CEEEE
Q 013881 262 C--FEPAASLKGHSL-----AVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD---QFLLS 328 (434)
Q Consensus 262 ~--~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~~---~~l~s 328 (434)
. .........|.. .|+++.|++ -.+++|+.+|.|.|||+++.+++..-. ....+|..+.|.. +--+.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence 2 111112222333 489999975 379999999999999999988765432 3456778888852 23334
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
......++|||-.++.....+... ..+..+|+.|+.. +++++-.+..+..|=++..-+
T Consensus 290 S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 290 SMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSG---MFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ecchHHhhhcccccCCceeecccc---CCcCceeeecCCc---eEEEecCCCcceeEEccccCC
Confidence 445678999999888766554433 3377778777655 889998888888887776443
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.3e-09 Score=95.52 Aligned_cols=238 Identities=18% Similarity=0.192 Sum_probs=153.7
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCC
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV 229 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~ 229 (434)
+-.+..++|++.-..++++..|-+|++||-.. ++...+ .....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L------------------------------------ks~sQ 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL------------------------------------KSVSQ 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee------------------------------------cchhh
Confidence 34677889998777788999999999999765 322221 12235
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCcccc----------ceeecCccceEEEEEEC--CCEEEEecC-CC
Q 013881 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP----------AASLKGHSLAVVSLVVG--ANKLYSGSM-DN 293 (434)
Q Consensus 230 ~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~----------~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg 293 (434)
..|++++|-|. .|++|+..| |.+|........... +....+| .+|+++.|+ +..+++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 67899999887 777777765 889987644322121 2223345 789999996 457777764 67
Q ss_pred cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
.|.|||..+++.+.-.....+.++-+.|+ +++|++++-|+..++|+....-..+...... ..+..-+|+|.+. .
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs--grvqtacWspcGs--f 294 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS--GRVQTACWSPCGS--F 294 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC--CceeeeeecCCCC--E
Confidence 89999999988776554556677788887 7899999999999999654432222222222 3677888887654 3
Q ss_pred EEEEEeCCCeEEEEeCCCCcc-------------cccc------c----ccCcEEEEEecCCc-EEEEeCCCC-------
Q 013881 372 VLLCSCNDNSVRFYDLPSFAE-------------RGKI------F----AKQEIRAIQLGPGG-LFFTGDGTG------- 420 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~-------------~~~~------~----~~~~v~~~~~spdg-~l~s~~~dg------- 420 (434)
+|++.+..-.|+-........ +..+ . ..+++.+++|.|.| +|++.-..+
T Consensus 295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k 374 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK 374 (445)
T ss_pred EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence 555554443333222211100 0001 0 14578999999999 888764332
Q ss_pred -CEEEEEccCC
Q 013881 421 -QVRVWQWCNG 430 (434)
Q Consensus 421 -~i~iwd~~~g 430 (434)
.|.+||....
T Consensus 375 ~~i~~fdtr~s 385 (445)
T KOG2139|consen 375 LHISRFDTRKS 385 (445)
T ss_pred hhhhhhccccc
Confidence 3556665543
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=8.3e-10 Score=94.14 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=133.3
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCC-CCeEE
Q 013881 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE-TLQCI 306 (434)
Q Consensus 233 ~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~-~~~~~ 306 (434)
.++.|++. .++++..+|.+.+-+..... .+..+..+.|.-++....|+ ++.+++|+.|+.+..||++ .++.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34555544 78899999999866554432 24556788999999888885 6799999999999999999 44555
Q ss_pred EE-EccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeE
Q 013881 307 QT-LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (434)
Q Consensus 307 ~~-~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 382 (434)
.. .+.|...|.++..+ +.++++|+.|..|++||.++..+.. ........|+.+..+|.... .++.++.-+-.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl--~~~~v~GGVWRi~~~p~~~~--~lL~~CMh~G~ 278 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL--FKAKVGGGVWRIKHHPEIFH--RLLAACMHNGA 278 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc--ccCccccceEEEEecchhhh--HHHHHHHhcCc
Confidence 44 56799999999988 4599999999999999999665432 22333367999998887653 23444444456
Q ss_pred EEEeCCCCcccccc------cccCcEEEEEecCCc-EEEEeC-CCCCEE-EEEccCCcc
Q 013881 383 RFYDLPSFAERGKI------FAKQEIRAIQLGPGG-LFFTGD-GTGQVR-VWQWCNGPV 432 (434)
Q Consensus 383 ~iwd~~~~~~~~~~------~~~~~v~~~~~spdg-~l~s~~-~dg~i~-iwd~~~g~~ 432 (434)
+|-+.+........ .|.+-...-.|.... .|+|++ .|..++ +|---+++-
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 67666554332111 123334444553333 788865 577755 887776653
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-09 Score=94.95 Aligned_cols=269 Identities=14% Similarity=0.198 Sum_probs=166.7
Q ss_pred cccccceEEEEE--eCCcEEEecCCCeEEEEeCCCCce----EEEEecCcc------------ccEEEEEccCCC--CEE
Q 013881 106 AVIKTDILCRNW--VQGNCMYGEKCKFLHSWTVGDGFK----LLTQLEGHQ------------KVVSGITLPSGS--DKL 165 (434)
Q Consensus 106 ~~~~~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~~----~~~~l~~h~------------~~V~~l~~s~~~--~~l 165 (434)
....+-|.|+.| ..+.+++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..+
T Consensus 22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred echhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 444557889988 445688899999999997654322 455565554 568899997755 467
Q ss_pred EEEECCCcEEEEECCCCceEE-EEecC--CceEEEEeCCCEEEEEcCCcEEEEECCC--------CceEEecCCCCcEEE
Q 013881 166 YSGSKDETVRVWDCASGQCAG-VINLG--GEVGCMISEGPWIFIGVTNFVKAWNTQT--------NTDLSLSGPVGQVYA 234 (434)
Q Consensus 166 ~s~s~dg~v~iwd~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~i~~w~~~~--------~~~~~~~~~~~~v~~ 234 (434)
+..+.|.+|++|.+....... .+... .+...+ ..+++--+.. ...+--..|...|.+
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~------------~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI------------TSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCcc------------ceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 788899999999987653322 11100 000000 0011100000 011123568899999
Q ss_pred EEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecC----ccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEE
Q 013881 235 MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKG----HSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 235 l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
+.++.| ..+....|=.|.+|++.-....+..+..-.. -+.-|++-.|++ +.|+-.+..|+|++-|++...+-
T Consensus 170 IS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 170 ISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 999998 5566678889999999876655443322221 233456666764 57888888999999999853221
Q ss_pred ----EE------------EccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC-CCCceEEEeeecCC------------
Q 013881 307 ----QT------------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT-DSGNLEVTYTHNEE------------ 355 (434)
Q Consensus 307 ----~~------------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~------------ 355 (434)
.. +.+--..|..+.|+ |+++++-.. -+|++||+. +.+.+..+..|..-
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 01 11223456778887 678876543 689999995 44445444444321
Q ss_pred -ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 356 -HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 356 -~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
..-..++|+-+. .++++|+..+.+++|++..+
T Consensus 329 IfdKFec~~sg~~---~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 329 IFDKFECSWSGND---SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhheeEEEEcCCc---ceEecccccceEEEecCCCC
Confidence 112344554333 38999999999999996543
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=2.6e-10 Score=99.21 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=177.0
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC-CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
.+++.++||.+.|++...-|...-+++.+.|.++|||--. .++.-..+
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI------------------------------- 63 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI------------------------------- 63 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-------------------------------
Confidence 5678899999999999999988889999999999999633 33322111
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcE
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI 295 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 295 (434)
...-..++.++.+..+ .|++|-.+|++.-+.+...-+.....+....|...+..+-++ ...+++.+.|..+
T Consensus 64 -----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 64 -----YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF 138 (404)
T ss_pred -----hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce
Confidence 1123456778888887 899999999999988766544345566677899999999987 5689999999877
Q ss_pred EEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 296 RVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
.---.+.+..+..+.- ...-+++.++=.+...|...|.|.+-.+.............+...+.+++|.+... +|.+
T Consensus 139 ~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---~LfS 214 (404)
T KOG1409|consen 139 AWHCTESGNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---LLFS 214 (404)
T ss_pred EEEeeccCCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc---EEEe
Confidence 6544555443322210 11112222221155566667777776665554433333344445688888865444 8999
Q ss_pred EeCCCeEEEEeCCCCccc--ccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 376 SCNDNSVRFYDLPSFAER--GKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 376 ~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|..|..|.+||+.-.+-+ ....|...|..+...+-- .+++++.||.|.+|+++....+
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 999999999999765433 334467788888887777 9999999999999999865543
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=3.6e-09 Score=102.28 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=139.6
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC---CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (434)
..|.+||.+. ...+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg--~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~------------------- 240 (435)
T PRK05137 182 KRLAIMDQDG--ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL------------------- 240 (435)
T ss_pred eEEEEECCCC--CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-------------------
Confidence 4788898865 344566678889999999999999988764 4578888887765432
Q ss_pred EEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCc--EEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
+..+.+.+....|+|+ ++++.+.++. |++||+..+. ...+..+........
T Consensus 241 -------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-----~~~Lt~~~~~~~~~~ 296 (435)
T PRK05137 241 -------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-----TTRLTDSPAIDTSPS 296 (435)
T ss_pred -------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-----eEEccCCCCccCcee
Confidence 2334455667788888 4456666665 7777776652 233444444444555
Q ss_pred E--CCCEEEEecC-CC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceEEEe
Q 013881 281 V--GANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 281 ~--~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~ 350 (434)
| +++.|+..+. +| .|+++|+..++. +.+..+...+....|+ +++|+..+.+ ..|.+||+..... ..+.
T Consensus 297 ~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 297 YSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred EcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 5 4666665553 33 688889876654 3443344445555665 6787776643 3588888754432 2222
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeC-C-----CeEEEEeCCCCcccccccccCcEEEEEecC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCN-D-----NSVRFYDLPSFAERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 409 (434)
.. ..+....|+|++. .|+..+. . ..|.++|+..+.. ..+.....+...+|+|
T Consensus 375 -~~--~~~~~p~~spDG~---~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 375 -SG--FLVEGPTWAPNGR---VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred -CC--CCCCCCeECCCCC---EEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCC
Confidence 11 1244566766544 5554433 2 3688888876544 3343444566677776
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.6e-09 Score=100.89 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=139.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceEEEEecCC----ceEEEE----------------------eCCCEEEEEc-CCc
Q 013881 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG----EVGCMI----------------------SEGPWIFIGV-TNF 211 (434)
Q Consensus 159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~----------------------~~~~~l~~~~-~~~ 211 (434)
+|...++|....||.+++||...++.-..|.... ...+.. .+...++-|. .|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4566899999999999999999998777765432 111111 1223444454 679
Q ss_pred EEEEECCCCceE---EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--
Q 013881 212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-- 284 (434)
Q Consensus 212 i~~w~~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-- 284 (434)
|.+++...++.. ....|.+.|.++.++.+ .|.+++.|+.+..|+.... ..+.........+.++.+.++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCCC
Confidence 999999999876 34579999999999988 9999999999999999887 677777777888888888765
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-------CCEEEE-EeCCCcEEEEEcCC
Q 013881 285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-------DQFLLS-CSLDKTIKVWFATD 342 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~s-~s~dg~i~vwd~~~ 342 (434)
.+++++ +.|++||+++++.+..|.+|.++|.+++|- |.++++ ...+.-|.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 777765 789999999999999999999999999885 355554 44567788886654
No 241
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.3e-08 Score=97.59 Aligned_cols=287 Identities=15% Similarity=0.154 Sum_probs=180.0
Q ss_pred CcccccccccceEEEEEeCC------------cE--EEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC---CC-
Q 013881 101 NINNRAVIKTDILCRNWVQG------------NC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GS- 162 (434)
Q Consensus 101 ~~~~~~~~~~~i~c~~~~~~------------~~--~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~---~~- 162 (434)
.++....|+..|+.+.|.+- .+ +.+...|.|.+||...+ ..+..++.|.++|..++|-+ +.
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcch
Confidence 34667788899999999321 22 33456689999999988 77788899999999999965 44
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecCCceEE-EEe---CC-C-----------------------------------
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-MIS---EG-P----------------------------------- 202 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~---~~-~----------------------------------- 202 (434)
..|+.-....+|.+|+..+|+..-.+.....+.+ +.. +. .
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 5677777788999999999987766554433322 211 11 1
Q ss_pred ---------------------------------------EEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--
Q 013881 203 ---------------------------------------WIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-- 240 (434)
Q Consensus 203 ---------------------------------------~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-- 240 (434)
.++......+.++|++-...+ ...-..+.+.-+.+-|+
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 122222223333333322222 11112222223334333
Q ss_pred --EEEEEeCCCcEEEEEcCCCCCcc------------------------cc-----------------------------
Q 013881 241 --LLFAGTQDGAILAWKFNVTTNCF------------------------EP----------------------------- 265 (434)
Q Consensus 241 --~l~~g~~dg~i~vwd~~~~~~~~------------------------~~----------------------------- 265 (434)
.|++...||.+.+|--+.....+ .+
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 88899999999988644310000 00
Q ss_pred ----------------------------------ceeecCccceEEEEEE-------------CCC-------EEEEecC
Q 013881 266 ----------------------------------AASLKGHSLAVVSLVV-------------GAN-------KLYSGSM 291 (434)
Q Consensus 266 ----------------------------------~~~~~~h~~~v~~l~~-------------~~~-------~l~s~s~ 291 (434)
+....+|....++... .++ +++.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 0000123333322221 111 4788999
Q ss_pred CCcEEEEeCCCCeEEEEEccccccEEEEEEcCC-EEEEEeC----------CCcEEEEEcCCCCceEEE-eeecCCccEE
Q 013881 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSL----------DKTIKVWFATDSGNLEVT-YTHNEEHGVL 359 (434)
Q Consensus 292 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~----------dg~i~vwd~~~~~~~~~~-~~~~~~~~~~ 359 (434)
.|+|.++|+.++.....+..|...|.++.|-|. .|++.+. -+.+.+-|++++.....- .....+.++.
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 999999999999999999999999999999854 4554433 345778888887543322 1334456677
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
.+..+..+. |++..-.|.-+.+||+++..
T Consensus 526 ~irvS~~~~---yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 526 AIRVSSSGR---YLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred eeeecccCc---eEEEEecccchHHHhhccch
Confidence 777655444 99999999999999996643
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=3.4e-09 Score=101.97 Aligned_cols=229 Identities=15% Similarity=0.036 Sum_probs=133.5
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEEEecCCceEEEEeCCCEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (434)
..|.++|... ...+.+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------- 234 (427)
T PRK02889 176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------- 234 (427)
T ss_pred cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------------
Confidence 4677777743 3444556688899999999999999887643 358888888776432
Q ss_pred EEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE-
Q 013881 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV- 281 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~- 281 (434)
+....+.+....|+|+ .| ++.+.+|...+|.++.... ....+..+........|
T Consensus 235 -------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 235 -------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---GLRRLTQSSGIDTEPFFS 292 (427)
T ss_pred -------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC---CcEECCCCCCCCcCeEEc
Confidence 2222334557889888 44 4667788877776543321 23334434433444555
Q ss_pred -CCCEEEEec-CCCcEEEEe--CCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceEEEeee
Q 013881 282 -GANKLYSGS-MDNSIRVWN--LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK---TIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 282 -~~~~l~s~s-~dg~i~vwd--~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~ 352 (434)
+++.|+..+ .++...+|. +.+++. ..+..+........|+ +++|+..+.++ .|.+||+.++.... +...
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~ 370 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT 370 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC
Confidence 466666544 345656664 444443 2222222223344554 78888777654 59999997765432 2211
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCC-C--eEEEEeCCCCccccccc-ccCcEEEEEecC
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCND-N--SVRFYDLPSFAERGKIF-AKQEIRAIQLGP 409 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 409 (434)
.......|+|++. .|+..+.+ | .+.+.++. +.....+. +.+.+...+|+|
T Consensus 371 ---~~~~~p~~spdg~---~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 371 ---TRDESPSFAPNGR---YILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ---CCccCceECCCCC---EEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 1234556766544 55555543 3 35666664 44444443 346677777876
No 243
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.21 E-value=1.9e-08 Score=96.06 Aligned_cols=259 Identities=14% Similarity=0.109 Sum_probs=162.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCce------------E-EEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------------G-CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------~-~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.+..++.++.++.|.-+|.++|+.+-........ . ....++.+++...++.+..+|.++++.+-...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 3557777888888999999999888776654310 0 11224444444567899999999998762222
Q ss_pred CCCcEE-EEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceee-----cCccceEEEEEECCCEEEEecCCCcEEEEeCC
Q 013881 228 PVGQVY-AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL-----KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 228 ~~~~v~-~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 301 (434)
....+. +.....+.+++++.++.|..+|..+++..++..... .+...+ ...++.++.++.+|.+..+|..
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----ATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EEECCEEEEEcCCCEEEEEEcc
Confidence 222222 233445688888999999999999885432221110 011111 1234567788889999999999
Q ss_pred CCeEEEEEccccc-----------cEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 302 TLQCIQTLTEHTS-----------VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 302 ~~~~~~~~~~~~~-----------~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
+++.+........ ....-...++.++.++.++.+..+|..+++.+....... ...+. ..++
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~----~~~~ 295 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA----VDGG 295 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE----EECC
Confidence 9987765432110 011222346788888899999999998886554332111 11111 1122
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.++.++.+|.|..+|..+++.+..... .....+..+. ++.|+.++.||.|++.|..+|+++
T Consensus 296 -~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 296 -RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 577778899999999999887654332 1112222221 458888999999999999999864
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.1e-08 Score=98.96 Aligned_cols=208 Identities=9% Similarity=-0.022 Sum_probs=132.2
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe---CCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--C
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 283 (434)
.|.++|........+..+...+.+..|+|+ .|+..+ .+..|++||+.++.. ..+..+...+....|+ +
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecCCCcccCcEECCCC
Confidence 788889888777778888889999999999 555544 346899999987632 2333344455555664 5
Q ss_pred CEE-EEecCCCc--EEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCCceEEEeeecCC
Q 013881 284 NKL-YSGSMDNS--IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 284 ~~l-~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~ 355 (434)
+.| ++.+.++. |++||+.+++. ..+..+........|+ ++.|+..+. ++ .|+++|+..... ..+... .
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~--~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG--G 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC--C
Confidence 555 45565655 77889988765 4465666656666776 677776664 33 688888765433 333222 1
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCC---CeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC-C-----CCEEEE
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCND---NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG-T-----GQVRVW 425 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~-d-----g~i~iw 425 (434)
.......|+|++. .|+....+ ..|.+||+.++.. ..+.....+....|+||| .|+..+. . ..|+++
T Consensus 334 ~~~~~~~~SpdG~---~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 334 GRYSTPVWSPRGD---LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CcccCeEECCCCC---EEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 2344566776654 56555432 3688899865443 233333356788999999 6554332 2 357888
Q ss_pred EccCCc
Q 013881 426 QWCNGP 431 (434)
Q Consensus 426 d~~~g~ 431 (434)
++..++
T Consensus 410 dl~g~~ 415 (435)
T PRK05137 410 DLTGRN 415 (435)
T ss_pred ECCCCc
Confidence 876654
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=118.53 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=161.4
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.|-..|.++.-+|...+-+||+.||.|++|....++.+..+. ..+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r-----------------------------------t~g 2250 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR-----------------------------------TAG 2250 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee-----------------------------------ccC
Confidence 345677788888888888999999999999988777665443 222
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEec---CCCcEEEEeCCC
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS---MDNSIRVWNLET 302 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~vwd~~~ 302 (434)
. ..|+.+.|+.+ .+.++..||.+.+|.... ++....+.|......+.|-+..+++++ .++.+.+||.--
T Consensus 2251 ~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-----k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~ 2324 (2439)
T KOG1064|consen 2251 N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-----KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLL 2324 (2439)
T ss_pred c-chhhhhhhcccCCceeeeccCCceeecccCC-----cceeccccCCccccceeeeehhhhccccCCCCCcccchhccc
Confidence 3 67777888766 888899999999999873 677888899999999999888777764 468999999642
Q ss_pred ---CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe
Q 013881 303 ---LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (434)
Q Consensus 303 ---~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (434)
..++. ..|.+.++++++- .+.|++|+.+|.|++||++..+....+.. + . .+.++++|+
T Consensus 2325 ~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~-----~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2325 PPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------L-----D-TREYFVTGS 2387 (2439)
T ss_pred Ccccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------h-----h-hhheeeccC
Confidence 23344 7899999999988 46899999999999999987655443332 1 1 223899999
Q ss_pred CCCeEEEEeCCCCcccccccccCcE--------EEEEecCCcEEEEeCCCCC
Q 013881 378 NDNSVRFYDLPSFAERGKIFAKQEI--------RAIQLGPGGLFFTGDGTGQ 421 (434)
Q Consensus 378 ~dg~i~iwd~~~~~~~~~~~~~~~v--------~~~~~spdg~l~s~~~dg~ 421 (434)
..|.|+||++.....+..+.+...- ..+...+.+.|++++.||+
T Consensus 2388 s~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 9999999999998777766542111 2233333447888888774
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=3.7e-09 Score=90.29 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=126.1
Q ss_pred EEEEEeCCCcEEEEEcCCCCCc--cccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeE--EEEEccccc
Q 013881 241 LLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTS 314 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~ 314 (434)
.++-+..+|.|.++........ ++++...+-......++.| .+..++++..+|.+.+-+...... ++.++.|+.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 6677788899999876654211 1111111111112234444 367899999999999666555443 458899999
Q ss_pred cEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-C
Q 013881 315 VVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-F 390 (434)
Q Consensus 315 ~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 390 (434)
......|+ ++.+.+|+.|+.+..||++.+..........+...|.++..+|. ...+|++|+.|..|++||.++ +
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~--~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP--KPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC--CCceEEEeccccceeeeehhccc
Confidence 99988887 78999999999999999995543322223334456878776654 446999999999999999984 6
Q ss_pred cccccccccCcEEEEEecCCc--E-EEEeCCCCCEEEEEccCC
Q 013881 391 AERGKIFAKQEIRAIQLGPGG--L-FFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 391 ~~~~~~~~~~~v~~~~~spdg--~-l~s~~~dg~i~iwd~~~g 430 (434)
+++..-...+.|..+.++|.- . |+++-.+| .+|-+.+.+
T Consensus 245 kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 245 KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred CccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 666666667889999999854 2 33333333 455555443
No 247
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.19 E-value=4.2e-08 Score=86.81 Aligned_cols=211 Identities=18% Similarity=0.118 Sum_probs=143.5
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEE--ccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceE--EEEeCCCE
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGIT--LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMISEGPW 203 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~ 203 (434)
++.|..||..+| +.+....- ...+.... ..+++.++++++.++.|..||..+|+.+..+.....+. ....++.+
T Consensus 2 ~g~l~~~d~~tG-~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTG-KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTT-EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCC-CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 688999999999 77776653 11121122 23367778888999999999999999998888755422 24445666
Q ss_pred EEEEcCCcEEEEECCCCceE-E-ecCC-----CCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccce-
Q 013881 204 IFIGVTNFVKAWNTQTNTDL-S-LSGP-----VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA- 275 (434)
Q Consensus 204 l~~~~~~~i~~w~~~~~~~~-~-~~~~-----~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~- 275 (434)
++...++.+..+|..+++.. . .... ........+..+.++++..++.|..+|+.++. .+.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK----LLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE----EEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc----EEEEeecCCCCC
Confidence 66667889999999999876 3 1211 12233455567788999999999999999884 33333222211
Q ss_pred ----------EEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEE-EEEcCCEEEEEeCCCcEEEEEcCCCC
Q 013881 276 ----------VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 276 ----------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~vwd~~~~~ 344 (434)
...+.+.++.++.++.++.+..+|+.+++.+.... ...+.. ....++.|+.++.++.|..||+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 13444455588888888864444999999765443 222333 55568888888899999999999886
Q ss_pred ce
Q 013881 345 NL 346 (434)
Q Consensus 345 ~~ 346 (434)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=2e-10 Score=118.69 Aligned_cols=191 Identities=16% Similarity=0.279 Sum_probs=148.5
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEEC--CCEEEEecCCCcEEEE
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 298 (434)
.+..+...|.++.-+|. +.++|+.||.|++|....+. .+..+. .....|+.+.|+ |+.+..+..||.+.+|
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----eEEEeeccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 34556677778877777 88999999999999988763 233222 223677777775 8899999999999999
Q ss_pred eCCCCeEEEEEccccccEEEEEEcCCEEEEEeC---CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSL---DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
... .++....+.|......+.|-+..+++++. ++.+.+||..-......+. .-+...++.+++.|... +|++
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q---llis 2353 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ---LLIS 2353 (2439)
T ss_pred ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce---EEEe
Confidence 987 67788888899999999998888887754 7899999976655444333 33345688888887766 9999
Q ss_pred EeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 376 SCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 376 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
|+.+|.|.+||++..+++..+.. +....++++|+..|.|+||++..=.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccc
Confidence 99999999999998877776654 4422399999999999999987643
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=3.8e-09 Score=92.66 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=130.4
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCC-
Q 013881 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLET- 302 (434)
Q Consensus 229 ~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~- 302 (434)
...+..++|++. .++++..|-.|++|+-... .+..........|++++|.+ ..|+.|+.. -|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst----~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC----CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence 345667889888 7889999999999997763 22222223456799999963 467777765 588997643
Q ss_pred ---CeEE----------EEEccccccEEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC
Q 013881 303 ---LQCI----------QTLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (434)
Q Consensus 303 ---~~~~----------~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
+..+ ....+| .+|+++.|. +..+++++. |..|.|||..++..+..... ....+.-+.|+|+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPd 249 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPD 249 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCC
Confidence 1111 112233 678999998 567777775 68899999998877655522 2345778889888
Q ss_pred CCCCcEEEEEeCCCeEEEEe-CCCCcccccccccCcEEEEEecCCc--EEEEeCCCCCEE
Q 013881 367 SEGKPVLLCSCNDNSVRFYD-LPSFAERGKIFAKQEIRAIQLGPGG--LFFTGDGTGQVR 423 (434)
Q Consensus 367 ~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~v~~~~~spdg--~l~s~~~dg~i~ 423 (434)
.+ +|++++-|+..++|. .++.....-....+.|...+|+|+| +|++.+..-.|+
T Consensus 250 gd---~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 250 GD---VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CC---EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 77 899999999999994 4555555555567799999999999 666666554443
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-09 Score=93.31 Aligned_cols=254 Identities=16% Similarity=0.163 Sum_probs=150.9
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCce-----EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEE
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-----AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~ 224 (434)
.+-|.+|.|.-.|.+||||..+|.|.++.-..... ...++.+.+-. . .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF------D-------------------YLk 79 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF------D-------------------YLK 79 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc------c-------------------hhh
Confidence 46789999999999999999999999997544321 11111110000 0 000
Q ss_pred ecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCcc-------------------------------cccee-
Q 013881 225 LSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCF-------------------------------EPAAS- 268 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~-------------------------------~~~~~- 268 (434)
...-...|..+.|.++ .++..+.|.+|++|.+....... .+.+.
T Consensus 80 SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~ 159 (433)
T KOG1354|consen 80 SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY 159 (433)
T ss_pred hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence 0111234444555443 45555566666666554322110 11111
Q ss_pred ecCccceEEEEEECCC-EEEEecCCCcEEEEeCCCCe-E--EEEEcc-----ccccEEEEEEc---CCEEEEEeCCCcEE
Q 013881 269 LKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQ-C--IQTLTE-----HTSVVMSLLCW---DQFLLSCSLDKTIK 336 (434)
Q Consensus 269 ~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~-~--~~~~~~-----~~~~v~~l~~~---~~~l~s~s~dg~i~ 336 (434)
-.+|+.-|.+++++.+ ..+..+.|=.|.+|+++--. . +-.++. -...|++..|+ .+.++-.+..|+|+
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 1368888999999754 34444568899999986422 1 222222 24557777787 46888899999999
Q ss_pred EEEcCCCCceE----EEeeecC----------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-Ccccccccc---
Q 013881 337 VWFATDSGNLE----VTYTHNE----------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-FAERGKIFA--- 398 (434)
Q Consensus 337 vwd~~~~~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--- 398 (434)
+-|++.....- .+..... -..+..+.|+.++ +++++-. --+|++||+.. .+++..+..
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG---ryilsRD-yltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG---RYILSRD-YLTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC---cEEEEec-cceeEEEeccccCCcceEEeehHh
Confidence 99998542111 1111100 1235566665544 4777653 36999999954 333333321
Q ss_pred ----------cCcE---EEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 399 ----------KQEI---RAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 399 ----------~~~v---~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.+.| ..++|+-++ +++||+....++++++..|..
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 2222 467899998 999999999999999776653
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.17 E-value=3.9e-09 Score=89.60 Aligned_cols=128 Identities=9% Similarity=0.164 Sum_probs=89.0
Q ss_pred cEEEEeCCC-CeEEEEEcc-ccccEEEEEEc--CCEEEE--EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 294 SIRVWNLET-LQCIQTLTE-HTSVVMSLLCW--DQFLLS--CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 294 ~i~vwd~~~-~~~~~~~~~-~~~~v~~l~~~--~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
...+|.++. ...+..+.- ..++|.+++|+ ++.|++ |..+..|.+||++ ...+..+. ......+.|+|.+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G 112 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDG 112 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----CCCceEEEECCCC
Confidence 344554422 233444433 34579999998 556544 4467899999996 33333222 2356778898776
Q ss_pred CCCcEEEEEeC---CCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC------CCCEEEEEccCC
Q 013881 368 EGKPVLLCSCN---DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG------TGQVRVWQWCNG 430 (434)
Q Consensus 368 ~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~------dg~i~iwd~~~g 430 (434)
. +|++++. .|.|.+||+++.+.+....+.. ++.++|+||| +|+++.. |..++||++...
T Consensus 113 ~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 113 R---FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred C---EEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 5 7887764 4679999999988888776654 7899999999 8888763 789999998643
No 252
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.15 E-value=2.6e-10 Score=110.77 Aligned_cols=181 Identities=17% Similarity=0.265 Sum_probs=141.0
Q ss_pred EeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccE
Q 013881 237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316 (434)
Q Consensus 237 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v 316 (434)
..++.++.|+....+..+|+++. +..+...-....|.-+..+++.+.+|...|+|.+-|.++.+.++++..|++.|
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~----~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTE----KETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred cCCcceeecchhhheeeeecccc----eeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 35668888888889999999886 34444443444588888899999999999999999999999999999999999
Q ss_pred EEEEEcCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 317 MSLLCWDQFLLSCSL---------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 317 ~~l~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
..+...|+.|++++. |.-|+|||++..+.+..+..+... .-+.++|.-.. .+++.+..|+..+-|.
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t--~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTT--RLAVTSQSGQFQFVDT 295 (1118)
T ss_pred eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccc--eEEEEecccceeeccc
Confidence 999999999999985 566899999987766555444332 23455555443 5788888999999994
Q ss_pred CC---Cccccccc--ccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 388 PS---FAERGKIF--AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 388 ~~---~~~~~~~~--~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
.+ ...-.... ....+.++++|+++ .|+.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33 21111111 25559999999999 999999999999997
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.9e-08 Score=97.19 Aligned_cols=207 Identities=13% Similarity=0.033 Sum_probs=127.9
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEcCCCCCccccceeecCccceEEEEEEC--C
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 283 (434)
.|.+||........+..+...+.+..|+|+ .|+..+. +..|++||+..+.. ..+ ...........|+ +
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l---~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELV---ASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEe---ccCCCCccCceECCCC
Confidence 578888877666667777888999999998 5665553 34699999977632 122 2222233345554 6
Q ss_pred CEEE-EecCCC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CCc--EEEEEcCCCCceEEEeeecCC
Q 013881 284 NKLY-SGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DKT--IKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 284 ~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~ 355 (434)
+.|+ +.+.+| .|++||+.+++. ..+..+........|+ +++|+..+. ++. |.++|+.++... .+....
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g-- 335 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQG-- 335 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCC--
Confidence 6554 555555 599999988774 4455555555666776 677776664 444 666666554432 222211
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCC---eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC---CCCEEEEEcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDN---SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG---TGQVRVWQWC 428 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~---dg~i~iwd~~ 428 (434)
.......|+|++. .|+..+.++ .|.+||+.+++.. .+.+........|+||| .|+..+. .+.|.++++.
T Consensus 336 ~~~~~~~~SpDG~---~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 336 NYNARASVSPDGK---KIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCccCEEECCCCC---EEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2233567776654 565544332 6999999887654 33333345567999999 6655543 3457777775
Q ss_pred CC
Q 013881 429 NG 430 (434)
Q Consensus 429 ~g 430 (434)
.+
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 44
No 254
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=7e-08 Score=85.39 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=117.8
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEE-cccc---
Q 013881 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL-TEHT--- 313 (434)
Q Consensus 238 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~--- 313 (434)
....+++++.++.|..||..+++ .+................++.++.++.++.|+.+|..+++.+... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGK----VLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSE----EEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC----EEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 55577777889999999988874 332222111100113556777787878899999999999998884 3221
Q ss_pred --ccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc--cEE---EEEeccCCCCCcEEEEEeCCCe-EEEE
Q 013881 314 --SVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH--GVL---ALCGMPDSEGKPVLLCSCNDNS-VRFY 385 (434)
Q Consensus 314 --~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~~~dg~-i~iw 385 (434)
.......+.++.++++..++.|..+|+++++.+.......... .+. .....+.-.++ .++.++.++. +.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~- 188 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV- 188 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-
Confidence 1223445558899999999999999999987766665532211 010 00011111122 5666666775 555
Q ss_pred eCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 386 DLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 386 d~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|+.+++.+.... ...+..+....++.|+.++.++.|..||+.+|+.+
T Consensus 189 d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 189 DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999998664333 33344322333347777769999999999999863
No 255
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.7e-08 Score=97.17 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=129.0
Q ss_pred cccceEEEEEeCCc--EEEec---CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-ECCC--cEEEEEC
Q 013881 108 IKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDE--TVRVWDC 179 (434)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~---~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-s~dg--~v~iwd~ 179 (434)
+...+....|+++. +++.+ .+..|++|++.++ +.. .+....+.+..++|+|||+.|+.. +.+| .|.+||+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-CeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 34578889998774 33332 3468999999877 322 222233345568999999988865 4455 5899999
Q ss_pred CCCceEEEEecCCce--EEEEeCCCEEEEEcC--C--cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-CC--
Q 013881 180 ASGQCAGVINLGGEV--GCMISEGPWIFIGVT--N--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QD-- 248 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~--~--~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~d-- 248 (434)
.+++........... ..+.++++.++...+ + .|.++++.+++...+...........|+|+ .|+..+ .+
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 988766554433322 233457776655442 3 456667777766655555555667889988 554443 33
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCc---EEEEeCCCCeEEEEEccccccEEEEEEcC
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS---IRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~---i~vwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (434)
..|.+||+.++.. +.+. ..+...-..++.++.+|+.++.++. +.++++ +++..+.+..|.+.+...+|++
T Consensus 355 ~~I~~~dl~~g~~--~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 355 QHIAKQDLATGGV--QVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ceEEEEECCCCCe--EEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3588889876631 1111 1121222344556778888877764 677777 4556677777777777666653
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.11 E-value=4.6e-08 Score=94.35 Aligned_cols=208 Identities=14% Similarity=0.040 Sum_probs=123.9
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEEEecCCceEEEEeCCCEE
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (434)
...|.++|.... ..+.+..+...+...+|+||+++|+.++.+ ..|++||+.+++...
T Consensus 169 ~~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------------ 228 (417)
T TIGR02800 169 RYELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------------ 228 (417)
T ss_pred cceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------------
Confidence 346888887643 334455677789999999999999987654 368888887765432
Q ss_pred EEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCC--cEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 205 ~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
+..+...+.++.|+++ ++++.+.++ .|++||+.++. ...+..+.......
T Consensus 229 --------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 229 --------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-----LTRLTNGPGIDTEP 283 (417)
T ss_pred --------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-----EEECCCCCCCCCCE
Confidence 2223344556788887 344555544 58888887652 22233333333334
Q ss_pred EE--CCCEEEEecC-CC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceEEE
Q 013881 280 VV--GANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK---TIKVWFATDSGNLEVT 349 (434)
Q Consensus 280 ~~--~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg---~i~vwd~~~~~~~~~~ 349 (434)
.| +++.|+..+. ++ .|+++|+.+++. ..+..+...+....++ +++|+..+.++ .|.+||+.+... ..+
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l 361 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVL 361 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEc
Confidence 44 5666665543 33 588889887664 3444444555666666 67888887765 788899876432 222
Q ss_pred eeecCCccEEEEEeccCCCCCcEEEEEeCCC---eEEEEeCC
Q 013881 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDN---SVRFYDLP 388 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 388 (434)
.... ......|+|++. .|+..+.++ .+.+.+..
T Consensus 362 ~~~~---~~~~p~~spdg~---~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 362 TDTG---LDESPSFAPNGR---MILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred cCCC---CCCCceECCCCC---EEEEEEeCCCcEEEEEEECC
Confidence 2211 122345555543 555555443 45555544
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=1.2e-07 Score=87.15 Aligned_cols=305 Identities=11% Similarity=0.080 Sum_probs=189.1
Q ss_pred cceEEEEEeCCcEE-EecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCc---------------
Q 013881 110 TDILCRNWVQGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET--------------- 173 (434)
Q Consensus 110 ~~i~c~~~~~~~~~-~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~--------------- 173 (434)
-++....|++-+.+ +...-..|.+|.-.... .+..+. | ..|..+.|+|.++||.|-+....
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred cchhheeecCcchheehhhccceEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 36777888776544 44455689999988763 444444 3 57999999999999999876544
Q ss_pred EEEEECCCCceEEEEecCCce------EEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC---CCcEEEEEEeCC----
Q 013881 174 VRVWDCASGQCAGVINLGGEV------GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND---- 240 (434)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~---~~~v~~l~~~~~---- 240 (434)
+.+||+.++..+..+...... .....++.+++--....+.++++ +........+ ...|....++|.
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCc
Confidence 999999999999888765433 23334566665556778899987 3332211111 345667777765
Q ss_pred EEEE-----EeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEe-----------cCCCcEEEEeCCC
Q 013881 241 LLFA-----GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG-----------SMDNSIRVWNLET 302 (434)
Q Consensus 241 ~l~~-----g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-----------s~dg~i~vwd~~~ 302 (434)
.|+. ....+.+++|.+..+. .+....-....-+.+.|. +++|+.- -....+++++++.
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s----~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNS----VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCC----eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 2222 3566778888887542 222211112222345553 4443211 1135688888874
Q ss_pred CeEEEEEccccccEEEEEEc--CCEEEE--EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 303 LQCIQTLTEHTSVVMSLLCW--DQFLLS--CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
.. +.....-.++|..+.|. ++.+++ |-.+..+.++|++.. +. +..... .-..+.|+|... +++.++-
T Consensus 265 ~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~-~~~Pe~--~rNT~~fsp~~r---~il~agF 335 (561)
T COG5354 265 RS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LR-FYFPEQ--KRNTIFFSPHER---YILFAGF 335 (561)
T ss_pred cc-cceeccccccceeeeecccCCceeEEecccccceeecccccc--eE-EecCCc--ccccccccCccc---EEEEecC
Confidence 33 33333568899999996 454444 457889999999765 22 222222 233444555443 7777665
Q ss_pred C---CeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeC------CCCCEEEEEccCCc
Q 013881 379 D---NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGD------GTGQVRVWQWCNGP 431 (434)
Q Consensus 379 d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~------~dg~i~iwd~~~g~ 431 (434)
| |.|-+||.........-......+-+.|+||+ ++.+.. .|..|.|||+...+
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 4 68999998865544422223334567899999 655543 47889999987543
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.5e-09 Score=103.37 Aligned_cols=274 Identities=16% Similarity=0.162 Sum_probs=181.0
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCC-ceEEEEecCCc--e--EEE--Ee-CCCEEEEEcCCcEEEEECCCCc
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVINLGGE--V--GCM--IS-EGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~--~--~~~--~~-~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
.+++.++..+|.|+-+|.++.-| +.+-|+... ...+-+.+-.+ + ..+ .+ ...+++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 36788899999999999999988 666666543 32222222111 1 111 12 3345555556677788876543
Q ss_pred ----eEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCC
Q 013881 222 ----DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (434)
Q Consensus 222 ----~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 292 (434)
...+-+|...|+.+.|++. .+++++.|-.+..||++... .++.....-......+.|+ ...+++.+..
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence 3367889999999999876 99999999999999999875 4455554444555667775 2345556677
Q ss_pred CcEEEEeCCCC-eEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 293 NSIRVWNLETL-QCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 293 g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
..|++||++.+ .++..+++|...|..+.|. ...+.+.+.|++|++||......... ........+..-++.|..+
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~-~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK-RTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc-eeccccCcceeccccccCc
Confidence 88999999875 5678899999999999988 56889999999999999875543221 2222234566667777766
Q ss_pred CCcEEEEEeCCCeEEEEeCCCC----------ccccccc-ccCcEEEEEec----------CCc-EEEEeCCCCCEEEEE
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSF----------AERGKIF-AKQEIRAIQLG----------PGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~-~~~~v~~~~~s----------pdg-~l~s~~~dg~i~iwd 426 (434)
+- ++.-.-.+..+.+++-+.. +.+..+. |.+.|..+.|- ... .|+|-+.|..+++|-
T Consensus 259 g~-~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 259 GY-CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ee-EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 53 2222222335555544432 2333333 34444444332 123 899999999999998
Q ss_pred ccC
Q 013881 427 WCN 429 (434)
Q Consensus 427 ~~~ 429 (434)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 865
No 259
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.2e-07 Score=91.26 Aligned_cols=216 Identities=10% Similarity=0.035 Sum_probs=127.0
Q ss_pred CCCEEEEEcC---CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC-C--CcEEEEEcCCCCCccccceeecC
Q 013881 200 EGPWIFIGVT---NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-D--GAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 200 ~~~~l~~~~~---~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-d--g~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
.+.++++... ..|.++|........+..+...+.+.+|+|+ .|+..+. + ..|++||+.++.. . .+..
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~---~l~~ 237 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--R---VVAN 237 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--E---Eeec
Confidence 4555555433 3677778766655566677888999999998 5555543 2 4599999987632 1 2222
Q ss_pred ccceEEEEEEC--CCEEE-EecCCCcEEEE--eCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CCcEEEEEcCCC
Q 013881 272 HSLAVVSLVVG--ANKLY-SGSMDNSIRVW--NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDS 343 (434)
Q Consensus 272 h~~~v~~l~~~--~~~l~-s~s~dg~i~vw--d~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~ 343 (434)
....+....|+ ++.|+ +.+.++...+| |+..++ ...+..+........|+ ++.|+..+. ++...||.+...
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 22334455664 55665 56778876665 454444 45565555555666676 667766554 566777765422
Q ss_pred -CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC---eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC
Q 013881 344 -GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN---SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~ 418 (434)
.....+.... .......|+|++. +|+..+.++ .|.+||+.+++.... ..........|+||| .|+..+.
T Consensus 317 ~g~~~~lt~~g--~~~~~~~~SpDG~---~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 317 GGAAQRVTFTG--SYNTSPRISPDGK---LLAYISRVGGAFKLYVQDLATGQVTAL-TDTTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCceEEEecCC--CCcCceEECCCCC---EEEEEEccCCcEEEEEEECCCCCeEEc-cCCCCccCceECCCCCEEEEEEe
Confidence 2222222111 1233456766544 666655443 699999988765433 223334678999999 6655543
Q ss_pred -CCC--EEEEEc
Q 013881 419 -TGQ--VRVWQW 427 (434)
Q Consensus 419 -dg~--i~iwd~ 427 (434)
.|. +.+.++
T Consensus 391 ~~g~~~l~~~~~ 402 (427)
T PRK02889 391 QGGRSVLAAVSS 402 (427)
T ss_pred cCCCEEEEEEEC
Confidence 333 444444
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=9.3e-10 Score=101.45 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=182.5
Q ss_pred ccccccceEEEEEe--CCcEEEecCCCeEEEEeCCCC------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 105 ~~~~~~~i~c~~~~--~~~~~~g~~d~~i~vwd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
...|.+.|..++-. .+..+.++.|++|++|.+... ..+..+++.|+.+|.++-|-.+-++++++ ||-|.+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 34566666665542 346888999999999998732 14777889999999999999988888765 788999
Q ss_pred EECCCCceEEEEec------CCceEEEEe-CCCEEEEE--cCCcEEEEECCCCceE---E---ecCCCCcEEEEEEeCC-
Q 013881 177 WDCASGQCAGVINL------GGEVGCMIS-EGPWIFIG--VTNFVKAWNTQTNTDL---S---LSGPVGQVYAMAVGND- 240 (434)
Q Consensus 177 wd~~~~~~~~~~~~------~~~~~~~~~-~~~~l~~~--~~~~i~~w~~~~~~~~---~---~~~~~~~v~~l~~~~~- 240 (434)
||.--++.+..+.. .+.+.|+.. +..++.++ ...+|+++|.+..+.. . ..+....+.+++..+.
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99888776654432 234555554 45555554 4779999999887754 1 2456677888888766
Q ss_pred -EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEE-ECCCEEEEecCCCcEEE-EeCCCCeEEEEEccccccEE
Q 013881 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRV-WNLETLQCIQTLTEHTSVVM 317 (434)
Q Consensus 241 -~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~~v~ 317 (434)
.++++-.+|.|.+.|.+++ +.+.....-......++ ++.+.|+....|.++.+ |-.-.+....+.+....+..
T Consensus 889 N~lAa~LSnGci~~LDaR~G----~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 889 NKLAAALSNGCIAILDARNG----KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred chhhHHhcCCcEEEEecCCC----ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 8999999999999999988 44444443333333333 24556778888999998 98777776666665555544
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEcCCC----CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 318 SLLCWDQFLLSCSLDKTIKVWFATDS----GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 318 ~l~~~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
-+..-|.-|+++.....+.+|.-... ..+..+....-....++++..|-.. -++.|...|.|.+
T Consensus 965 flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~---afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC---AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc---hhhccCCCCceee
Confidence 44444777888888888888842211 1122222222334455666555443 4666777787765
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=5.5e-08 Score=93.48 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=151.5
Q ss_pred EEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCC------------CCEEEEEECCCcEEEEECCC
Q 013881 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG------------SDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 114 c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~------------~~~l~s~s~dg~v~iwd~~~ 181 (434)
..+|+++++++-+....|.+-|..+- +.++.++-|+..|+.+.|.|- .-+||++...|.|.+||...
T Consensus 20 A~Dw~~~GLiAygshslV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSHSLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred ccccCccceEEEecCceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 47888888888777888999998886 999999999999999999762 12577888889999999999
Q ss_pred CceEEEEecCCc-eEEE--Ee---CC-C-EEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC---EEEEEeCCC
Q 013881 182 GQCAGVINLGGE-VGCM--IS---EG-P-WIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDG 249 (434)
Q Consensus 182 ~~~~~~~~~~~~-~~~~--~~---~~-~-~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg 249 (434)
+..+..+..+.. +..+ .+ +. . +++......+.+|+..+|+.. ..........++.+.|- .+..-+..|
T Consensus 99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 887777766532 3222 21 22 2 444466889999999999887 44444455566887765 666666667
Q ss_pred cEEEEEcCCCCCcc---ccceeecCccc----------------e---------EEEEEECCC--EEEEecCCCcEEEEe
Q 013881 250 AILAWKFNVTTNCF---EPAASLKGHSL----------------A---------VVSLVVGAN--KLYSGSMDNSIRVWN 299 (434)
Q Consensus 250 ~i~vwd~~~~~~~~---~~~~~~~~h~~----------------~---------v~~l~~~~~--~l~s~s~dg~i~vwd 299 (434)
.+.+-+.-..+..- +..+....|.. . ...++|++. .++.......+.++|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 77776653322110 11111111111 0 011233432 233444567899999
Q ss_pred CCCCeEEEEEccccccE--EEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 013881 300 LETLQCIQTLTEHTSVV--MSLLCW--DQFLLSCSLDKTIKVWFATD 342 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~v--~~l~~~--~~~l~s~s~dg~i~vwd~~~ 342 (434)
++-..++....-..+.+ ..+... .+.|++...||.+.+|-.+.
T Consensus 259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred chhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 99888887766555544 444444 46899999999999996554
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=7.7e-06 Score=76.54 Aligned_cols=266 Identities=15% Similarity=0.209 Sum_probs=150.3
Q ss_pred CeEEEEeC--CCC-ceEEEEecCccccEEEEEccCCCCEEEEEEC----CCcEEEEECCCC-ceEEEEecCCceEEEEeC
Q 013881 129 KFLHSWTV--GDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----DETVRVWDCASG-QCAGVINLGGEVGCMISE 200 (434)
Q Consensus 129 ~~i~vwd~--~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~----dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 200 (434)
+.|++|++ +++ ++.+..+. -......|+++|++++|++... ++.|..|++... ..+..+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~----------- 80 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN----------- 80 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE-----------
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee-----------
Confidence 68888888 344 12222222 3345667889999999999987 467888877653 1111111
Q ss_pred CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEEEcCCCCCccccceeec-------
Q 013881 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLK------- 270 (434)
Q Consensus 201 ~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~------- 270 (434)
...........++++++ +|+++. .+|.|.++++..............
T Consensus 81 -----------------------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~ 137 (345)
T PF10282_consen 81 -----------------------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN 137 (345)
T ss_dssp -----------------------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESS
T ss_pred -----------------------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCc
Confidence 11112334456777776 555544 588899999887422111111110
Q ss_pred ---CccceEEEEEEC--CCEEEEe-cCCCcEEEEeCCCCe--EE--EEEc-cccccEEEEEEc--CCEEEEE-eCCCcEE
Q 013881 271 ---GHSLAVVSLVVG--ANKLYSG-SMDNSIRVWNLETLQ--CI--QTLT-EHTSVVMSLLCW--DQFLLSC-SLDKTIK 336 (434)
Q Consensus 271 ---~h~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~--~~--~~~~-~~~~~v~~l~~~--~~~l~s~-s~dg~i~ 336 (434)
.......++.++ ++++++. -....|++|++.... +. ..+. .....-..+.|+ ++++.+. -.++.|.
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 112334566665 5566554 334589999987654 32 2222 233445677777 4566554 4578899
Q ss_pred EEEcCC-CCceEEEee---ec----CCccEEEEEeccCCCCCcEEEE-EeCCCeEEEEeCCC--Cc--ccccccc-cCcE
Q 013881 337 VWFATD-SGNLEVTYT---HN----EEHGVLALCGMPDSEGKPVLLC-SCNDNSVRFYDLPS--FA--ERGKIFA-KQEI 402 (434)
Q Consensus 337 vwd~~~-~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~--~~--~~~~~~~-~~~v 402 (434)
++++.. ...+..... .. .......+.++|++. +|++ ...+++|.+|++.. ++ .+..+.. ....
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~---~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR---FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS---EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC---EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc
Confidence 999982 222222221 11 112466777776644 5554 44678999999943 22 2222222 4458
Q ss_pred EEEEecCCc-EEEEe-CCCCCEEEEEcc--CCcc
Q 013881 403 RAIQLGPGG-LFFTG-DGTGQVRVWQWC--NGPV 432 (434)
Q Consensus 403 ~~~~~spdg-~l~s~-~~dg~i~iwd~~--~g~~ 432 (434)
+.++++|+| +|+++ -.++.|.+|++. +|.+
T Consensus 295 r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 999999999 66555 577899999874 5654
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.01 E-value=2.4e-07 Score=89.41 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=123.8
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCC---CcEEEEEcCCCCCccccceeecCccceEEEEEEC--C
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 283 (434)
.|.++|........+..+...+....|+|+ .|+....+ ..|++||+.++.. ..+..+...+.++.|+ +
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecCCCCccceEECCCC
Confidence 688888876666667777778899999999 55555433 4799999987631 1222233344455664 5
Q ss_pred CEEE-EecCCC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCCceEEEeeecCC
Q 013881 284 NKLY-SGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 284 ~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~ 355 (434)
+.|+ +.+.++ .|++||+.+++. ..+..+........|+ ++.|+..+. ++ .|.++|+.+... ..+... .
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~--~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR--G 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC--C
Confidence 5554 455444 599999988754 3344444444455565 677766654 33 577778765543 222222 2
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCC---eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCC---CEEEEEcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDN---SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTG---QVRVWQWC 428 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg---~i~iwd~~ 428 (434)
.......++|++. +++..+.++ .|.+||+.++.... +..........|+||| .|+..+.++ .+++.+..
T Consensus 322 ~~~~~~~~spdg~---~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 322 GYNASPSWSPDGD---LIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCccCeEECCCCC---EEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 2345566766543 677766665 78999998754322 2222234456899999 666655543 35555543
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.9e-07 Score=86.53 Aligned_cols=307 Identities=11% Similarity=0.114 Sum_probs=184.6
Q ss_pred ceEEEEEeCCcEEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC-----------CCcEEEEE
Q 013881 111 DILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----------DETVRVWD 178 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-----------dg~v~iwd 178 (434)
.=+-+.|++-+-++.+ .-.-|.+|--.+ +..++.+. |. .|.-+.|||..+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3456788876554444 445588887554 35555554 53 5888999999999999764 25799999
Q ss_pred CCCCceEEEEecCC------ceEEEEeCCCEEEEEcCCcEEEEECCCCceEEe-cCCCCcEEEEEEeCC--EEEEEeCC-
Q 013881 179 CASGQCAGVINLGG------EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQD- 248 (434)
Q Consensus 179 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~d- 248 (434)
+.+|...+.+.... ++.-.+.++++++.-..+.|.+++..+-..+.. .-....|....|+|. +||-=+..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999998887632 223334588888888889999999877444422 223466778889887 22221110
Q ss_pred ----CcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEe----------cCCCcEEEEeCCCCeEEEEEccc
Q 013881 249 ----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG----------SMDNSIRVWNLETLQCIQTLTEH 312 (434)
Q Consensus 249 ----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~----------s~dg~i~vwd~~~~~~~~~~~~~ 312 (434)
..+.+-.+.+. +.+++..-+.-.=+.+.| +|++|+.- +.-..+-|+.++.....-..-.-
T Consensus 369 ~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 12333333332 223333333333344455 46665532 11123455555554332222234
Q ss_pred cccEEEEEEc--CCEEEEEeC---CCcEEEEEcCC-CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe---CCCeEE
Q 013881 313 TSVVMSLLCW--DQFLLSCSL---DKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVR 383 (434)
Q Consensus 313 ~~~v~~l~~~--~~~l~s~s~---dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~ 383 (434)
...|..++|. |+.+++-+. ..++.+|.+++ ......+..... .....+.|+|.+. +++.+. ..|.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~---fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGR---FVVVAALVSRRGDLE 520 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCc---EEEEEEecccccceE
Confidence 5667778887 666555443 46799998874 333322222222 4567788876654 666553 578999
Q ss_pred EEeCCC--CcccccccccCcEEEEEecCCc-EEEEeCC------CCCEEEEEccC
Q 013881 384 FYDLPS--FAERGKIFAKQEIRAIQLGPGG-LFFTGDG------TGQVRVWQWCN 429 (434)
Q Consensus 384 iwd~~~--~~~~~~~~~~~~v~~~~~spdg-~l~s~~~------dg~i~iwd~~~ 429 (434)
++|+.- .+...... +...+.+.|.|.| +++|++. |.--+||+++.
T Consensus 521 F~D~~~a~~k~~~~~e-h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPE-HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEecchhhhhhccCcc-ccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999884 22222222 4456788999999 9998875 44567777753
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-07 Score=79.93 Aligned_cols=185 Identities=14% Similarity=0.042 Sum_probs=125.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE---EECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL---VVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l---~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 317 (434)
+|+.|+..|...+|...+.. ........|...|+-+ +-..-.+..++.|.++++.++.-+..-..+....-.+.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~---~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTND---GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred EEEeccccceeeeecccCcc---cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 89999999999999988763 2222223333333221 12233577788899999888765443332222222366
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc
Q 013881 318 SLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG 394 (434)
Q Consensus 318 ~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 394 (434)
+++++ +.++++.+....|..|.+..... +..+........-....|+.... .+|++..||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~---~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL---QFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc---eEEEEecCCcEEEEEecccccch
Confidence 67776 78999999999999999876543 33334334344455566654443 89999999999999998754332
Q ss_pred cc------cccCcEEEEEecCCc---EEEEeCCCCCEEEEEccCCc
Q 013881 395 KI------FAKQEIRAIQLGPGG---LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 395 ~~------~~~~~v~~~~~spdg---~l~s~~~dg~i~iwd~~~g~ 431 (434)
.. .|.+.++.+.|++.| +|+..-.-+.+.+-|++++.
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 22 258899999999877 67777777889999988765
No 266
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.99 E-value=3.1e-08 Score=84.08 Aligned_cols=132 Identities=10% Similarity=0.192 Sum_probs=86.8
Q ss_pred EEEEeCCCCceEEEEecC-ccccEEEEEccCCCCEEEEE--ECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEE
Q 013881 131 LHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG 207 (434)
Q Consensus 131 i~vwd~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (434)
..+|.+......+..+.- ..++|.+++|+|+++.|+.. ..+..|.+||++ ++.+..+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~------------------- 98 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF------------------- 98 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-------------------
Confidence 445544322134444433 34579999999999987654 457789999986 4433322
Q ss_pred cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEcCCCCCccccceeecCccceEEEEEEC
Q 013881 208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG 282 (434)
Q Consensus 208 ~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~ 282 (434)
+...+..+.|+|+ +|++++. .|.|.+||.+.. +.+...... .++.+.|+
T Consensus 99 --------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~~--~~t~~~Ws 152 (194)
T PF08662_consen 99 --------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEHS--DATDVEWS 152 (194)
T ss_pred --------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccccC--cEEEEEEc
Confidence 2456678999998 7776654 467999999965 445444322 35677775
Q ss_pred --CCEEEEecC------CCcEEEEeCCCCeEEEEE
Q 013881 283 --ANKLYSGSM------DNSIRVWNLETLQCIQTL 309 (434)
Q Consensus 283 --~~~l~s~s~------dg~i~vwd~~~~~~~~~~ 309 (434)
|++|+++.. |..++||+.. |+.+...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 668887764 7889999974 5555443
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.9e-07 Score=88.17 Aligned_cols=226 Identities=13% Similarity=0.064 Sum_probs=127.4
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEEEecCCceEEEEeCCCEEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI 206 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (434)
.|.++|.+.+ . .+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------------- 237 (430)
T PRK00178 180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------------- 237 (430)
T ss_pred EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------
Confidence 5777887754 3 34455677889999999999999876644 357888887765432
Q ss_pred EcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCC--cEEEEEcCCCCCccccceeecCccceEEEEEE
Q 013881 207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281 (434)
Q Consensus 207 ~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 281 (434)
+....+.+....|+|+ .| ++...+| .|++||+.++. ...+..+........|
T Consensus 238 ------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-----~~~lt~~~~~~~~~~~ 294 (430)
T PRK00178 238 ------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-----LSRVTNHPAIDTEPFW 294 (430)
T ss_pred ------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEcccCCCCcCCeEE
Confidence 1222233445778887 44 3555555 58888887652 2223334333444555
Q ss_pred C--CCEEEEec-CCC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC-C--cEEEEEcCCCCceEEEee
Q 013881 282 G--ANKLYSGS-MDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD-K--TIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 282 ~--~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~ 351 (434)
+ ++.|+..+ .++ .|+++|+.+++..+ +...........|+ +++|+..+.+ + .|.+||+.++... .+..
T Consensus 295 spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~ 372 (430)
T PRK00178 295 GKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD 372 (430)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC
Confidence 4 56655444 333 57788888776433 22111222233444 7777766643 3 5888898776432 2222
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeC-C--CeEEEEeCCCCccccccc-ccCcEEEEEecC
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCN-D--NSVRFYDLPSFAERGKIF-AKQEIRAIQLGP 409 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 409 (434)
. . ......|+|++. .++..+. + ..|.++++..... ..+. ..+.+...+|+|
T Consensus 373 ~-~--~~~~p~~spdg~---~i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 373 T-S--LDESPSVAPNGT---MLIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred C-C--CCCCceECCCCC---EEEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 1 1 112345665443 5554443 3 3577777754332 2232 345566677776
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=6.6e-08 Score=90.28 Aligned_cols=139 Identities=15% Similarity=0.204 Sum_probs=112.3
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEEc--cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEE
Q 013881 284 NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 359 (434)
..++-|...|.|.+|++..++....+. .|.+.|.++.+. -..|.+++.|..+..|+..+...+....... ..+.
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--~~~~ 148 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--PLVS 148 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--Cccc
Confidence 368889999999999999999988886 589999999887 4589999999999999998776665555444 3477
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCC-----c-EE-EEeCCCCCEEEEEccC
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPG-----G-LF-FTGDGTGQVRVWQWCN 429 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spd-----g-~l-~s~~~dg~i~iwd~~~ 429 (434)
+++.+|++. ++++++ ++|++||+++.+.+..+.+ .++|++++|..+ | ++ .+...+.-+.+|-+..
T Consensus 149 sl~is~D~~---~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGK---ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCC---EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 778777644 788776 7899999999999998875 788999999877 6 44 4455667788888765
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=6.3e-08 Score=86.36 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=109.1
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEECCCCc----eEEEEecCCce---EEEEeCCCEEEEEcCC---cEEEEECCCCceE
Q 013881 154 SGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEV---GCMISEGPWIFIGVTN---FVKAWNTQTNTDL 223 (434)
Q Consensus 154 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~---~~~~~~~~~l~~~~~~---~i~~w~~~~~~~~ 223 (434)
..+..++++++||.+..+....++++.... ++......... ..+..+...+++-..| .+.+|....+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 334456677777777777776666655432 33333333222 2223344444543333 5666666667777
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC-EEEEecCCCcEEEEeC
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNL 300 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~ 300 (434)
.+.+|...++.+++++| +++++..|..|++-.+...- ....-.-||..-|..++.-.+ .|++++.|++|++||+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 88999999999999999 99999999999998877541 223334579999999998655 5799999999999999
Q ss_pred CCCeEEEEEc
Q 013881 301 ETLQCIQTLT 310 (434)
Q Consensus 301 ~~~~~~~~~~ 310 (434)
++++++.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999987664
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.4e-09 Score=100.20 Aligned_cols=167 Identities=17% Similarity=0.260 Sum_probs=125.9
Q ss_pred ceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCC-------CeEEEEEccccccEEEEEEcCCEEEEEeCCCcEE
Q 013881 266 AASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIK 336 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~ 336 (434)
+..+.+|+..|..+.- +.+.+++++.|++|++|.++. ..+..+++.|+.+|..+-|-.+.-..++.|+.|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 3456788888887765 356899999999999999864 3477888999999999998855545566799999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE-eCCCeEEEEeCCCCcccccccc------cCcEEEEEecC
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSFAERGKIFA------KQEIRAIQLGP 409 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp 409 (434)
+||.--++.+........+.....+...++-... +++.| +...+|+++|.+..+-...+.. ...+++++..+
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9998766665544433333344444444443333 44444 6789999999998776555442 35689999999
Q ss_pred Cc-EEEEeCCCCCEEEEEccCCccc
Q 013881 410 GG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 410 dg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.| .++++-.+|+|.+.|.++|+++
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCcee
Confidence 99 9999999999999999999875
No 271
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.2e-08 Score=86.37 Aligned_cols=252 Identities=13% Similarity=0.152 Sum_probs=146.2
Q ss_pred EEEEeCCCCceEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcC
Q 013881 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT 209 (434)
Q Consensus 131 i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (434)
+++.+..+ ++....+.+|...|.+|+|||..+ +|..++.+.+|+|.|+++..++..+.
T Consensus 175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-------------------- 233 (463)
T KOG1645|consen 175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-------------------- 233 (463)
T ss_pred eEEeccCC-cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------------------
Confidence 44444444 355667788999999999999877 78889999999999999877665432
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecC--ccceEEEEEEC--
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVG-- 282 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--h~~~v~~l~~~-- 282 (434)
.+ ..+++++|.-+ +++.|..+|.|.+||++..... ...+.+ ...+|..+++-
T Consensus 234 -----------------a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~---~~e~~a~~t~~pv~~i~~~~~ 292 (463)
T KOG1645|consen 234 -----------------AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP---LMELVANVTINPVHKIAPVQP 292 (463)
T ss_pred -----------------cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCch---HhhhhhhhccCcceeecccCc
Confidence 23 67888888766 8999999999999999987532 222222 23455555541
Q ss_pred ------CCEEEEecCCCcEEEEeCCC--C--eEEEEEccccccEEEEEEcC--CEEEEEe-CCC------cEEEE-EcCC
Q 013881 283 ------ANKLYSGSMDNSIRVWNLET--L--QCIQTLTEHTSVVMSLLCWD--QFLLSCS-LDK------TIKVW-FATD 342 (434)
Q Consensus 283 ------~~~l~s~s~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~l~~~~--~~l~s~s-~dg------~i~vw-d~~~ 342 (434)
+.+|+....+ +..|++.- + -++..+ +..+...++++.+ +.++... .+. .|-.+ |-.+
T Consensus 293 n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d 369 (463)
T KOG1645|consen 293 NKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD 369 (463)
T ss_pred cccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeecccc
Confidence 3334443332 33454321 1 122222 2244555555552 3333322 210 01110 1111
Q ss_pred CCceEEEe----eecCCc--cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC-Cc-EEE
Q 013881 343 SGNLEVTY----THNEEH--GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP-GG-LFF 414 (434)
Q Consensus 343 ~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-dg-~l~ 414 (434)
+..+.... +..... .-.++.-. .++..++.++...+.+.+||..+++.+..+....+|.++.... ++ -++
T Consensus 370 G~pVc~~r~~~~Gs~~~kl~t~~ai~~~--~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syL 447 (463)
T KOG1645|consen 370 GFPVCGKRRTYFGSKQTKLSTTQAIRAV--EDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYL 447 (463)
T ss_pred CceeeeecccccCCcccccccccceecc--ccccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchh
Confidence 11111000 000000 00011111 2223355666677899999999999999999889998887654 34 344
Q ss_pred EeCCCCCEEEEEccC
Q 013881 415 TGDGTGQVRVWQWCN 429 (434)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (434)
..-.|..++||+.++
T Consensus 448 a~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 448 ALLTDDRVHIYKNES 462 (463)
T ss_pred hheecceEEEEecCC
Confidence 444566799998764
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=1.3e-08 Score=85.57 Aligned_cols=224 Identities=17% Similarity=0.222 Sum_probs=141.5
Q ss_pred eEEEEEeCC-cEEEecCCCeEEE-----------EeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 112 ILCRNWVQG-NCMYGEKCKFLHS-----------WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 112 i~c~~~~~~-~~~~g~~d~~i~v-----------wd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
++.+.++.+ .++++..++.+.. |+-..+..+.+.+.-|+++=.+-+.+--++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 666666544 3444555554444 3333333445555555554444444555678999999999999998
Q ss_pred CCCc----eEEEEecCCceEEEEeCCCEEEEE------cCCcEEEEECCCCceEE-ecCCCCcEEEEEEeCC---EEEEE
Q 013881 180 ASGQ----CAGVINLGGEVGCMISEGPWIFIG------VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND---LLFAG 245 (434)
Q Consensus 180 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~~------~~~~i~~w~~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~g 245 (434)
+... .+........-.++...+.++.++ .-+..+.|+++..+.+. .......|.+++-+|. ++++|
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEe
Confidence 7521 111122222233333344444443 34466677766554431 1222334888888876 89999
Q ss_pred eCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeEEE---------------
Q 013881 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQ--------------- 307 (434)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~--------------- 307 (434)
+.||.+-+||.+... .+...+..|..++..+.|+ +..|+++++||.+..||..+. .+.
T Consensus 199 t~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT-FLSISNQASVISSWLSGD 274 (319)
T ss_pred cCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc-eEEecCccccccccccCC
Confidence 999999999999874 5677888999999999996 568999999999999997641 111
Q ss_pred ---E-------EccccccEEEEEEcCCEEEEEeCCCcEEEEE
Q 013881 308 ---T-------LTEHTSVVMSLLCWDQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 308 ---~-------~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd 339 (434)
. +..-...|.++...+..|++|+.-+.|++++
T Consensus 275 ~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 0 0111223444555577888888777777764
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.91 E-value=3.8e-06 Score=87.45 Aligned_cols=305 Identities=10% Similarity=0.067 Sum_probs=178.7
Q ss_pred cceEEEEEeC--CcEEEecCCCeEEEE----eCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 110 TDILCRNWVQ--GNCMYGEKCKFLHSW----TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 110 ~~i~c~~~~~--~~~~~g~~d~~i~vw----d~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
+.|..+.|.. +.++.+..+|.|.+. +..+. .+...-.-...|.+++||||+..|+..+.+++|.+-+ .+.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccce
Confidence 4788888743 358888899999998 55442 2333333457999999999999999999999888875 4555
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce---------------EEecCCCCcEEEEEEeCC--EEEEEe
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD---------------LSLSGPVGQVYAMAVGND--LLFAGT 246 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~---------------~~~~~~~~~v~~l~~~~~--~l~~g~ 246 (434)
.+........- ......+.+|....=.-|.-..++. -.+. ....-..++|-.| ++++.+
T Consensus 153 ~i~E~~l~~~~---~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 153 PISEVPLDSDD---FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred EEEEeecCccc---cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 55555433110 0112333333222111111111111 1122 4556678999888 666665
Q ss_pred C---C---CcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecC---CCcEEEEeCCCCeEEEEEc----c
Q 013881 247 Q---D---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM---DNSIRVWNLETLQCIQTLT----E 311 (434)
Q Consensus 247 ~---d---g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~----~ 311 (434)
. . ..|+||+-+. ........-.+--.+++| +|+++++.-. ...|.+|. ++|-....|. .
T Consensus 229 ~~~~~~~~R~iRVy~ReG-----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSREG-----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEcCCCceeEEEEECCCc-----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 4 2 5788998652 222222211111234455 6777777654 35566776 4444333332 3
Q ss_pred ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC-
Q 013881 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL- 387 (434)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~- 387 (434)
....|..+.|+ ++.|+....|. |.+|-..+..- ++..........+..+.|+|..+. .|...+.+|.+..+++
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~--~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL--RLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC--EEEEEecCCcEEEEEEE
Confidence 56788999999 56777766554 99997765431 222222222233444778776543 4555555566655433
Q ss_pred ---CCCc--------cc------------------------ccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 388 ---PSFA--------ER------------------------GKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 388 ---~~~~--------~~------------------------~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
..+. .+ ..+.....|.+++|++++ .+++-..||.|.+|.+...
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1110 00 111226679999999999 8999999999999997654
No 274
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=7.3e-09 Score=62.92 Aligned_cols=38 Identities=37% Similarity=0.663 Sum_probs=36.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
+++.++++|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 68899999999999999999999999999999999997
No 275
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.88 E-value=3.7e-06 Score=82.37 Aligned_cols=290 Identities=14% Similarity=0.129 Sum_probs=172.8
Q ss_pred EeCCcEEEecCCCeEEEEeCCCCceEEEEecCccc------cEE--EEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK------VVS--GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 117 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~------~V~--~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
..++.+++++.++.|+..|..+| +.+..++.... .+. .++.. ++..++.++.++.|.-+|.++|+.+-.+
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 34667888888999999999999 66666543322 110 01111 2267888889999999999999999888
Q ss_pred ecCCce------EE-EEeCCCEEEEEc----------CCcEEEEECCCCceE-EecCC-C-------------------C
Q 013881 189 NLGGEV------GC-MISEGPWIFIGV----------TNFVKAWNTQTNTDL-SLSGP-V-------------------G 230 (434)
Q Consensus 189 ~~~~~~------~~-~~~~~~~l~~~~----------~~~i~~w~~~~~~~~-~~~~~-~-------------------~ 230 (434)
...... .+ ....+.+++++. ++.+..+|..+++.+ ..... . .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 766541 11 112234455543 467889999998876 22111 0 0
Q ss_pred cEE-EEEEe--CCEEEEEeCCC------------------cEEEEEcCCCCCccccceee------cCccceE-EEEE-E
Q 013881 231 QVY-AMAVG--NDLLFAGTQDG------------------AILAWKFNVTTNCFEPAASL------KGHSLAV-VSLV-V 281 (434)
Q Consensus 231 ~v~-~l~~~--~~~l~~g~~dg------------------~i~vwd~~~~~~~~~~~~~~------~~h~~~v-~~l~-~ 281 (434)
.+. ..++. .+.++.++.++ .|.-+|..+++..++..... .....++ ..+. .
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 111 23333 24788887665 78999998885443321110 1111111 1221 3
Q ss_pred CCC---EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEE------------------eCCCcEEEEEc
Q 013881 282 GAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC------------------SLDKTIKVWFA 340 (434)
Q Consensus 282 ~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~------------------s~dg~i~vwd~ 340 (434)
++. .++.++.+|.+...|.++++.+....... ..++.+++.+..+ ..+|.|.-.|+
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 443 58888999999999999999987664321 1122223333332 23577888888
Q ss_pred CCCCceEEEeeecCC------ccE--EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEE--EEecCC
Q 013881 341 TDSGNLEVTYTHNEE------HGV--LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRA--IQLGPG 410 (434)
Q Consensus 341 ~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~spd 410 (434)
.+++.+......... ... ..+.. .+.+|++++.||.|+.+|..+++.+.+......+.+ +.+..+
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~ 448 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVN 448 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeC
Confidence 888765554432100 000 01111 112788888999999999999999988765554433 334446
Q ss_pred c--EEEEe
Q 013881 411 G--LFFTG 416 (434)
Q Consensus 411 g--~l~s~ 416 (434)
| ++++.
T Consensus 449 g~~yv~~~ 456 (488)
T cd00216 449 GKQYVGVM 456 (488)
T ss_pred CEEEEEEE
Confidence 6 44443
No 276
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.8e-07 Score=90.50 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=137.3
Q ss_pred cccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 108 ~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
..+.++|++++...+++|+-+|.|++.+.... + .+...|... ..+|.+++|||.||+|.|-.+-+.+...+
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 34588999999999999999999999997753 3 444446544 66899999999999999999988876655
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEcCCCC
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~g~~dg~i~vwd~~~~~ 260 (434)
+.. ..++.+++++|+ .+++|+.-| +.++.-+--.
T Consensus 109 ~df--------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 109 YDF--------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred Eec--------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 432 346677888877 789999999 7777543322
Q ss_pred CccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccE------EEEEEcCCEEEEEeCCCc
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV------MSLLCWDQFLLSCSLDKT 334 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v------~~l~~~~~~l~s~s~dg~ 334 (434)
. +....+....++|.++.|.|++++-++.+| |++||+.+.+.+..+......+ ..+.|.++..++-+...+
T Consensus 150 n--k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 150 N--KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred C--ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 1 222246667889999999999999988776 8999999998887776544333 345666555555566678
Q ss_pred EEEEEcC
Q 013881 335 IKVWFAT 341 (434)
Q Consensus 335 i~vwd~~ 341 (434)
|+|..++
T Consensus 227 v~i~~I~ 233 (846)
T KOG2066|consen 227 VKICSIK 233 (846)
T ss_pred EEEEEEe
Confidence 9999887
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=1.2e-05 Score=73.80 Aligned_cols=222 Identities=11% Similarity=0.090 Sum_probs=137.4
Q ss_pred ecCCCeEEEEeCCCCceEEEEecCcc-------ccEEEEEccCCCCEEEEEE-C-CCcEEEEECCCCceEEEEecCCceE
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGS-K-DETVRVWDCASGQCAGVINLGGEVG 195 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~~h~-------~~V~~l~~s~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (434)
|-.+..|.+||+.+. +.+..+.--. ..-..++++|||++|+... . +..|.+.|+.+++.+.++..+....
T Consensus 73 G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~ 151 (352)
T TIGR02658 73 GKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH 151 (352)
T ss_pred CCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence 446789999999998 8888776422 2334788999999999776 3 6899999999999999998866433
Q ss_pred EE-EeCCCEEEEEcCCcEEEEECCCCceE-----Ee-cCCCCcEEE-EEEeC-C--EEEEEeCCCcEEEEEcCCCCCcc-
Q 013881 196 CM-ISEGPWIFIGVTNFVKAWNTQTNTDL-----SL-SGPVGQVYA-MAVGN-D--LLFAGTQDGAILAWKFNVTTNCF- 263 (434)
Q Consensus 196 ~~-~~~~~~l~~~~~~~i~~w~~~~~~~~-----~~-~~~~~~v~~-l~~~~-~--~l~~g~~dg~i~vwd~~~~~~~~- 263 (434)
.+ ..+..+++.+.|+......+...... .+ ......+.. -.+.+ + .+++..+ |.|.+.|+.......
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 33 23455555556665544333221111 01 010000000 02233 3 5555555 999999975542211
Q ss_pred ccceeecC-------ccceEEEEEE--CCCEEEEec----------CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--
Q 013881 264 EPAASLKG-------HSLAVVSLVV--GANKLYSGS----------MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-- 322 (434)
Q Consensus 264 ~~~~~~~~-------h~~~v~~l~~--~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-- 322 (434)
.....+.. ......-+++ ++++++... ..+.|.++|+.+++.+..+.. ...+..++++
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D 309 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQD 309 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCC
Confidence 11111111 1112222444 466666632 225899999999999998874 3467777777
Q ss_pred CC-EEEEEe-CCCcEEEEEcCCCCceEEE
Q 013881 323 DQ-FLLSCS-LDKTIKVWFATDSGNLEVT 349 (434)
Q Consensus 323 ~~-~l~s~s-~dg~i~vwd~~~~~~~~~~ 349 (434)
++ +|++.. .++.|.++|..+.+.+..+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 56 666555 5788999999888776665
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=8.8e-09 Score=89.90 Aligned_cols=147 Identities=20% Similarity=0.301 Sum_probs=113.6
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
.+.+|.+..+.+-|++++....+. ..+.|.++.|... +++.|+.+|.|..+|++...+.-......--|...|+++.
T Consensus 227 hfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred eecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 355677889999999999887766 6788899988763 9999999999999999876332112222334778888765
Q ss_pred ---ECCCEEEEecCCCcEEEEeCCCCeE---EEEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 281 ---VGANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 281 ---~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
+++.+|++.+.+|+|++||++.-++ ++++.+|-..-.-+-+. +..+++++.|-..+||.++.+..+..+.
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 4788999999999999999998777 88888886544333333 6789999999999999998876655443
No 279
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=1.1e-06 Score=85.12 Aligned_cols=205 Identities=12% Similarity=0.017 Sum_probs=118.5
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC-C--cEEEEECCCCceEEEEecCC--ceEEEEeCCCEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWI 204 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l 204 (434)
.|.++|.+.. .. +.+..+...+....|+|||+.|+..+.+ + .|.+||+.+++......... ....+.+++..+
T Consensus 199 ~l~i~d~dG~-~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGY-NE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCC-Cc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 6777776553 22 3455567789999999999998876543 2 58899998887544333222 223445677766
Q ss_pred EEE--cCC--cEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCc--EEEEEcCCCCCccccceeecCccce
Q 013881 205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLA 275 (434)
Q Consensus 205 ~~~--~~~--~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~ 275 (434)
+.. .++ .|.++|+.+++...+..+........|+++ ++++...++. |+++|+.++.. +.+ ...++...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCc
Confidence 643 244 588889998887777766666778899988 4444444554 55556655421 111 12222221
Q ss_pred EEEEEECCCEEEEecC-CC--cEEEEeCCCCeEEEEEcccc-ccEEEEEEcCCEEEEEeC-CCc--EEEEEc
Q 013881 276 VVSLVVGANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHT-SVVMSLLCWDQFLLSCSL-DKT--IKVWFA 340 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~s~-dg~--i~vwd~ 340 (434)
-..+..++++|+..+. ++ .|.++|+.+++.. .+.... ..-.+++.+++.|+..+. ++. +.+++.
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1234446677665544 34 4666788877643 333221 111123334666655443 333 556665
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.79 E-value=5.8e-06 Score=76.27 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=174.2
Q ss_pred EEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc-eEEEEeCCCEEEE----
Q 013881 132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCMISEGPWIFI---- 206 (434)
Q Consensus 132 ~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 206 (434)
.+|+..+. ..-..+..-.-++..++|||.|.+|++....+ |.+|.-.....+..+.+..- ...+.+.+.+|.+
T Consensus 15 ~f~~~~s~-~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 15 VFWNSQSE-VIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred EeecCccc-cccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccC
Confidence 34554443 44445555667899999999999999988877 99999888776666554432 2333445555544
Q ss_pred ------------EcCCcEEEEECCCCceE-EecCCCCc--EE-EEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceee
Q 013881 207 ------------GVTNFVKAWNTQTNTDL-SLSGPVGQ--VY-AMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASL 269 (434)
Q Consensus 207 ------------~~~~~i~~w~~~~~~~~-~~~~~~~~--v~-~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 269 (434)
..++.+.+||..++..+ .+.....+ .. -+.|+-+ .+++--....++|+++ +......+...+
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~l 171 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNL 171 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhc
Confidence 22346999999999887 34333333 33 4556554 2222224456999997 332211222222
Q ss_pred cCccceEEEEEECCC----EEE-----EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe--------
Q 013881 270 KGHSLAVVSLVVGAN----KLY-----SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-------- 330 (434)
Q Consensus 270 ~~h~~~v~~l~~~~~----~l~-----s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-------- 330 (434)
. ...+..+.+++. .|+ ....++++++|.+..+..+.+-.-.+..-..+.|. +++|+.--
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 2 345666666543 233 24667899999998766665443333333445555 55444321
Q ss_pred ---CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEe
Q 013881 331 ---LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQL 407 (434)
Q Consensus 331 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 407 (434)
....++|++++.... .... .....|..++|.|.+..- -+++|-.+-.+.++|++.. +.....++.=+.+.|
T Consensus 250 syfgesnLyl~~~~e~~i-~V~~--~~~~pVhdf~W~p~S~~F-~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~f 323 (561)
T COG5354 250 SYFGESNLYLLRITERSI-PVEK--DLKDPVHDFTWEPLSSRF-AVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFF 323 (561)
T ss_pred ceeccceEEEEeeccccc-ceec--cccccceeeeecccCCce-eEEecccccceeecccccc--eEEecCCcccccccc
Confidence 235688888874332 2222 223578999999877632 3444567889999999865 333334455566788
Q ss_pred cCCc-EEEEeCC---CCCEEEEEccCC
Q 013881 408 GPGG-LFFTGDG---TGQVRVWQWCNG 430 (434)
Q Consensus 408 spdg-~l~s~~~---dg~i~iwd~~~g 430 (434)
+|.+ +++.++- .|.|-+|+....
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCc
Confidence 9988 7776554 467888886654
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=86.88 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=113.4
Q ss_pred EEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC-----eEEEEEcccccc
Q 013881 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-----QCIQTLTEHTSV 315 (434)
Q Consensus 243 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~~~~~ 315 (434)
++.+.+-.|.+-|+.++- ...+. ..+.|.++.|. +++++.|...|.|..+|++.+ .+.+.+ -|.+.
T Consensus 228 fs~G~sqqv~L~nvetg~-----~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-----QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS 300 (425)
T ss_pred ecccccceeEEEEeeccc-----ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc
Confidence 666777788888888762 23333 55667777774 679999999999999999875 344444 48888
Q ss_pred EEEEE---EcCCEEEEEeCCCcEEEEEcCCCCc---eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 316 VMSLL---CWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 316 v~~l~---~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
|+++. +++++|++.+.+|+|++||++--++ +....+|.....-..+.. +. .+..+++++.|...+||.++.
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v--~~-eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV--KE-EEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc--cc-ccceEEEccCeeEEEEEeccc
Confidence 88765 4588999999999999999987766 556666654433333322 22 333788899999999999999
Q ss_pred Ccccccccc-----cCcEEEEEecC
Q 013881 390 FAERGKIFA-----KQEIRAIQLGP 409 (434)
Q Consensus 390 ~~~~~~~~~-----~~~v~~~~~sp 409 (434)
+.++.++.. +..+.+++|..
T Consensus 378 ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 378 GHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CceeeccCCCCccccccccceehhc
Confidence 999888764 23455666643
No 282
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=3.7e-06 Score=81.42 Aligned_cols=206 Identities=14% Similarity=0.056 Sum_probs=119.6
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-CC--CcEEEEEcCCCCCccccceeecCccceEEEEEEC--C
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QD--GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~d--g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 283 (434)
.|.++|.+.+....+..+...+....|+|+ .|+..+ .+ ..|.+|++.++.. +.+.... ..+....|+ +
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~---g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFE---GLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCC---CCcCCeEECCCC
Confidence 466777777666666677788999999998 555444 33 3688999987632 2222222 223345554 5
Q ss_pred CEEE-EecCCC--cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCCceEEEeeecCC
Q 013881 284 NKLY-SGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 284 ~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~ 355 (434)
+.|+ +.+.++ .|++||+.+++.. .+..+........|+ ++.|+..+. ++ .|+++|+.++........ .
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~-- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-G-- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-C--
Confidence 6665 555555 6888899887653 455555555566676 566665553 33 577777766543322221 1
Q ss_pred ccEEEEEeccCCCCCcEEEEEeC-CC--eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeC-CCC--CEEEEEcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCN-DN--SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGD-GTG--QVRVWQWC 428 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~-~dg--~i~iwd~~ 428 (434)
.......++|++. .|+..+. ++ .|.++|+.+++... +..........|+||| .++..+ .+| .|.++++.
T Consensus 331 ~~~~~~~~Spdg~---~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 331 NYNARPRLSADGK---TLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCccceEECCCCC---EEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1223345665543 5555443 33 58889998875432 2222222356899999 555443 333 46666664
Q ss_pred C
Q 013881 429 N 429 (434)
Q Consensus 429 ~ 429 (434)
.
T Consensus 407 g 407 (430)
T PRK00178 407 G 407 (430)
T ss_pred C
Confidence 3
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-06 Score=72.23 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=153.1
Q ss_pred eEEEEeCCCCce-EEEEecCccccEEEEEccC-----CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCE
Q 013881 130 FLHSWTVGDGFK-LLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203 (434)
Q Consensus 130 ~i~vwd~~~~~~-~~~~l~~h~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (434)
.+.+|+..+..+ .++.. +.|.|-| ...+||.|+.-|...+|.+.+.+....+
T Consensus 53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------- 110 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ--------------- 110 (344)
T ss_pred eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceee---------------
Confidence 367777765422 22222 3345544 4568999999999999998866533211
Q ss_pred EEEEcCCcEEEEECCCCceEEecCCCCcE---EEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccc--eEEE
Q 013881 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQV---YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL--AVVS 278 (434)
Q Consensus 204 l~~~~~~~i~~w~~~~~~~~~~~~~~~~v---~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~ 278 (434)
...|...| ...+-....+..++.|.++++.++...... ..-|.. .+.+
T Consensus 111 ---------------------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------~~~h~~~~~~ns 163 (344)
T KOG4532|consen 111 ---------------------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------FAVHNQNLTQNS 163 (344)
T ss_pred ---------------------ecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------ceeeccccceee
Confidence 11111111 111222226778889999999988765321 112222 2555
Q ss_pred EEE--CCCEEEEecCCCcEEEEeCCCC-eE-EE-EEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 013881 279 LVV--GANKLYSGSMDNSIRVWNLETL-QC-IQ-TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 279 l~~--~~~~l~s~s~dg~i~vwd~~~~-~~-~~-~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 351 (434)
+++ ++.++++.+....|..|.+... +. +. .....+..-.+.+|+ ...+++++.||++.|||++....+.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 555 4678999999999999988652 22 22 222333444566666 67999999999999999998765543332
Q ss_pred ---ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--------c-cCcEEEEEecCCc-EEEEeCC
Q 013881 352 ---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--------A-KQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 352 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~-~~~v~~~~~spdg-~l~s~~~ 418 (434)
..+...+..+.|++.+... +|+..-.-+.+.+.|++++.....+. | ...|..-.|+.++ .+.+..+
T Consensus 244 strp~hnGa~R~c~Fsl~g~lD-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLD-LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ccCCCCCCceEEEEecCCCcce-EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2234568888888766554 45555456789999999876554432 2 2347777888887 6655555
Q ss_pred CCCEEEEEccC
Q 013881 419 TGQVRVWQWCN 429 (434)
Q Consensus 419 dg~i~iwd~~~ 429 (434)
+. +.=|++.+
T Consensus 323 ~~-~ae~ni~s 332 (344)
T KOG4532|consen 323 LQ-GAEYNILS 332 (344)
T ss_pred hh-hheeeccc
Confidence 42 44455443
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=8.3e-07 Score=84.85 Aligned_cols=270 Identities=16% Similarity=0.201 Sum_probs=172.0
Q ss_pred cceEEEEE--eCCcEEEecCCCeEEEEeCCCC--------------ceEEEEecCccccEEEEEccCCCCEEEEEECCCc
Q 013881 110 TDILCRNW--VQGNCMYGEKCKFLHSWTVGDG--------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173 (434)
Q Consensus 110 ~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~--------------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~ 173 (434)
....|+.| -.+.+..|+.||.+++-.+.+. ..+-++|.||.+.|.-+.|+...+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 36789999 4567888999999999887642 1234678899999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 013881 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (434)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i 251 (434)
|.||-+-.+.-... ..-....+.|.+++|+.+ .+.....||.|
T Consensus 95 IiVWmlykgsW~EE-----------------------------------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE-----------------------------------MINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred EEEEeeecccHHHH-----------------------------------HhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 99999877642211 112234456777777766 67777777777
Q ss_pred EEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCC-------eEEEE----EccccccEEE
Q 013881 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETL-------QCIQT----LTEHTSVVMS 318 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~-------~~~~~----~~~~~~~v~~ 318 (434)
.+=.++.+.. --..+++ .....+.|+++ .++.+-..|.+.++|.... .+.-. +......|..
T Consensus 140 IVGsvdGNRI---wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 140 IVGSVDGNRI---WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred EEEeecccee---cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 6665554310 0011111 12235666654 5666777899999997532 11111 1112233555
Q ss_pred EEEc----------CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC---------
Q 013881 319 LLCW----------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND--------- 379 (434)
Q Consensus 319 l~~~----------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 379 (434)
+.|. ...|+++-..|.+.|-.-.+......+... ..+....|.+++. +|++++.+
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~---vLAvcG~~~da~~~~d~ 288 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGA---VLAVCGNDSDADEPTDS 288 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cEeecceecCCCc---EEEEccCcccccCcccc
Confidence 5554 137889999999988755544444333332 3466777776655 78777754
Q ss_pred CeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 380 NSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 380 g~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
+.|.+|. +-|+.+..+.. ...|++++|-..| .++.+ .|+.|++=++
T Consensus 289 n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 289 NKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred ceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence 2455554 33556666654 6679999998887 55544 4555655444
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.9e-06 Score=80.29 Aligned_cols=221 Identities=11% Similarity=0.144 Sum_probs=147.2
Q ss_pred EEEEEeCCcEEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCC--CEEEE-----EECCCcEEEEECCCCce
Q 013881 113 LCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS--DKLYS-----GSKDETVRVWDCASGQC 184 (434)
Q Consensus 113 ~c~~~~~~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~l~s-----~s~dg~v~iwd~~~~~~ 184 (434)
.|..|+.+..+.+- ..+.+++|+..+-....+.| |...|+.+.+||.+ ..+|+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 57888776544443 56789999998743344444 67889999999863 34443 35567899999873322
Q ss_pred EEE-----EecCCceEEEEe---CCCEEEEEc-----------CCcEEEEECCCCceEEecCCCCcEEEEEEeCC----E
Q 013881 185 AGV-----INLGGEVGCMIS---EGPWIFIGV-----------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----L 241 (434)
Q Consensus 185 ~~~-----~~~~~~~~~~~~---~~~~l~~~~-----------~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~ 241 (434)
-.. |-....+..... .+-++++.. +..++++++++.....-....++|.++.|+++ -
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFA 286 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEE
Confidence 211 111112221111 112333322 23788888884444444456899999999998 4
Q ss_pred EEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC---CCcEEEEeCCCCeEEEEEccccccE
Q 013881 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM---DNSIRVWNLETLQCIQTLTEHTSVV 316 (434)
Q Consensus 242 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~v 316 (434)
++.|-.-..+.|+|++.. ++..+. .++-.++-|+ |++++.++- -|.|-+||+.+.+++..+......+
T Consensus 287 VvyGfMPAkvtifnlr~~-----~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRGK-----PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEEecccceEEEEcCCCC-----EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 566777889999998763 444444 3444555554 677776654 4899999999999999998877777
Q ss_pred EEEEEcCCEEEEEeC------CCcEEEEEcCC
Q 013881 317 MSLLCWDQFLLSCSL------DKTIKVWFATD 342 (434)
Q Consensus 317 ~~l~~~~~~l~s~s~------dg~i~vwd~~~ 342 (434)
...+.+|++|++++. |..++||+...
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 777777999999875 78899999853
No 286
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.74 E-value=0.00017 Score=67.44 Aligned_cols=215 Identities=15% Similarity=0.214 Sum_probs=134.4
Q ss_pred CCCeEEEEeCCCC---ceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECCC-CceEEE---Eec--------
Q 013881 127 KCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCAS-GQCAGV---INL-------- 190 (434)
Q Consensus 127 ~d~~i~vwd~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~-~~~~~~---~~~-------- 190 (434)
..+.|..|.+... .+.+.........-..++++|++++|+++.. +|+|.++++.. +..... +..
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 3578888887742 3344444433345567999999999999875 89999999987 433322 211
Q ss_pred ---CCceEEE--EeCCCEEEEEc--CCcEEEEECCCCc--eE---E-ecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 191 ---GGEVGCM--ISEGPWIFIGV--TNFVKAWNTQTNT--DL---S-LSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 191 ---~~~~~~~--~~~~~~l~~~~--~~~i~~w~~~~~~--~~---~-~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
.....++ .++++++++.. .+.|.+|++.... .. . ..........+.|+++ ..++.-.++.|.++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 1223333 44778888764 4589999887665 21 1 2345567889999998 45566678899999
Q ss_pred EcCCCCCccccceeecCc------cceEEEEEE--CCCEEEEe-cCCCcEEEEeCC--CC--eEEEEEccccccEEEEEE
Q 013881 255 KFNVTTNCFEPAASLKGH------SLAVVSLVV--GANKLYSG-SMDNSIRVWNLE--TL--QCIQTLTEHTSVVMSLLC 321 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h------~~~v~~l~~--~~~~l~s~-s~dg~i~vwd~~--~~--~~~~~~~~~~~~v~~l~~ 321 (434)
++......++.+...... ......|.+ ++++|+++ ..+..|.+|++. ++ +.+..+.........+.+
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 998433222333322211 113455555 46776554 467889999983 23 334444443444677777
Q ss_pred c--CCEEEEEe-CCCcEEEEEcC
Q 013881 322 W--DQFLLSCS-LDKTIKVWFAT 341 (434)
Q Consensus 322 ~--~~~l~s~s-~dg~i~vwd~~ 341 (434)
+ +++|+++. .++.|.+|++.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 5 78888776 56799999875
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.4e-07 Score=83.80 Aligned_cols=259 Identities=14% Similarity=0.076 Sum_probs=172.3
Q ss_pred ccccceEEEEE-eCCcEEEecCCCeEEEEeCC--CCceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCC
Q 013881 107 VIKTDILCRNW-VQGNCMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASG 182 (434)
Q Consensus 107 ~~~~~i~c~~~-~~~~~~~g~~d~~i~vwd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~ 182 (434)
-|++.|+.+.- ..+-++.++.||.++.|.-. .+.+.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 35666765554 55678889999999999865 466788888899999999999999999999888 999999999876
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EE-EEEeCCCcEEEEEcCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LL-FAGTQDGAILAWKFNV 258 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l-~~g~~dg~i~vwd~~~ 258 (434)
..+..++.. ...+.+..+.-..+ .+ ++.-.++.|.++|-..
T Consensus 87 DminmiKL~-----------------------------------~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~ 131 (558)
T KOG0882|consen 87 DMINMIKLV-----------------------------------DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG 131 (558)
T ss_pred chhhhcccc-----------------------------------cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcC
Confidence 554333221 11122222221222 23 3345678899998766
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEE
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIK 336 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~ 336 (434)
... +....-.-|..+|..+.+. ++.+++....|.|.-|.... ..+... ..+
T Consensus 132 d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~--~~qfPr------~~l----------------- 184 (558)
T KOG0882|consen 132 DFC--QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG--PFQFPR------TNL----------------- 184 (558)
T ss_pred CcC--ccceecccccCceEEEEeeccccceeeccccceeEeecCCC--cccCcc------ccc-----------------
Confidence 532 3444455689999998886 57788999999999999763 111110 001
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc------------------
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA------------------ 398 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 398 (434)
.|.+.....+..+.... ....++.++|++. .+.+-+.|..|+++++.+++.+..+..
T Consensus 185 ~~~~K~eTdLy~f~K~K--t~pts~Efsp~g~---qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 185 NFELKHETDLYGFPKAK--TEPTSFEFSPDGA---QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred cccccccchhhcccccc--cCccceEEccccC---cccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 12222222222222222 2355677777665 677778999999999998876655421
Q ss_pred ----------------cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 399 ----------------KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 399 ----------------~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
...-+.+.|...| +|+-|+-=| |+|.++.++.++
T Consensus 260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 0113456788888 888887766 899999988765
No 288
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.73 E-value=1.8e-05 Score=77.54 Aligned_cols=261 Identities=12% Similarity=0.070 Sum_probs=155.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCc-------eE--E-EEeC-CCEEEEEcCCcEEEEECCCCceE-EecCCC
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGE-------VG--C-MISE-GPWIFIGVTNFVKAWNTQTNTDL-SLSGPV 229 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-------~~--~-~~~~-~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~ 229 (434)
+..++.++.++.|.-.|..+|+.+-.+..... +. . ...+ +..++...++.|..+|.++++.+ ......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 45577788889999999999988877765432 00 0 1123 44444456889999999999887 222211
Q ss_pred C-----cE-EEEEEeCCEEEEEe---------CCCcEEEEEcCCCCCccccceeec------C---------cc-ceE-E
Q 013881 230 G-----QV-YAMAVGNDLLFAGT---------QDGAILAWKFNVTTNCFEPAASLK------G---------HS-LAV-V 277 (434)
Q Consensus 230 ~-----~v-~~l~~~~~~l~~g~---------~dg~i~vwd~~~~~~~~~~~~~~~------~---------h~-~~v-~ 277 (434)
. .+ .+..+....++.++ .+|.|..+|..+++..++...... . +. ..+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 1 01 12233445666664 367889999988754332111000 0 00 011 1
Q ss_pred EEEE--CCCEEEEecCCC------------------cEEEEeCCCCeEEEEEccccc----------cE-EEEE-EcCC-
Q 013881 278 SLVV--GANKLYSGSMDN------------------SIRVWNLETLQCIQTLTEHTS----------VV-MSLL-CWDQ- 324 (434)
Q Consensus 278 ~l~~--~~~~l~s~s~dg------------------~i~vwd~~~~~~~~~~~~~~~----------~v-~~l~-~~~~- 324 (434)
...+ .++.++.++.++ .|.-+|+.+++.+..++.-.. ++ ..+. .++.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 2233 356788887665 799999999999887653111 11 1111 2232
Q ss_pred --EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE------------------eCCCeEEE
Q 013881 325 --FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS------------------CNDNSVRF 384 (434)
Q Consensus 325 --~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~dg~i~i 384 (434)
.++.++.+|.+...|.++++.+........ .+...+ + .++.+ ..+|.|.-
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----~~~~~~----~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----PMAYDP----G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeecc-----ccccCC----c-eEEEccccccccCcccccCCCCCCCceEEEE
Confidence 678888999999999999887665433211 111111 1 22221 24678888
Q ss_pred EeCCCCccccccccc---------CcE--EEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 385 YDLPSFAERGKIFAK---------QEI--RAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 385 wd~~~~~~~~~~~~~---------~~v--~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.|+.+++.+-+.... .+. ..+... ++.|++++.||.|+.+|..+|+++
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCcee
Confidence 899888877665432 111 122222 238888899999999999999864
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=7.3e-08 Score=92.14 Aligned_cols=209 Identities=19% Similarity=0.272 Sum_probs=139.4
Q ss_pred EEEEeCC--CCceEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCc-eEEEEec---CCceEEEEe-CCC
Q 013881 131 LHSWTVG--DGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQ-CAGVINL---GGEVGCMIS-EGP 202 (434)
Q Consensus 131 i~vwd~~--~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~---~~~~~~~~~-~~~ 202 (434)
-.+|++. +.......+.||..+|+.+.|.|. ...|++++.|-.|..||+++-. .+..+.. ......... ++.
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 4678876 223556677899999999999985 4689999999999999998764 2322221 111222222 455
Q ss_pred EEEEEcCCcEEEEECCCCceE--EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
.++....+.|.+||.+.+... .+.+|...|+.+.|... .+.+.+.|++|++||........+.. .....+|.
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~---vtt~~piw 249 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT---VTTNFPIW 249 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee---ccccCcce
Confidence 566666779999999887654 78889999999999876 88999999999999998654321111 11112221
Q ss_pred -----------EEEEC--CCEEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc------------CCEEEEEeC
Q 013881 278 -----------SLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW------------DQFLLSCSL 331 (434)
Q Consensus 278 -----------~l~~~--~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~------------~~~l~s~s~ 331 (434)
++.+. ++.+.----+.....|+..+ .+++++|.+|...|..+.|. +-.|++=+.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 11111 12111112223333444433 46799999999999877664 127999999
Q ss_pred CCcEEEEEcCC
Q 013881 332 DKTIKVWFATD 342 (434)
Q Consensus 332 dg~i~vwd~~~ 342 (434)
|..+++|-+.+
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999997653
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.73 E-value=9e-08 Score=80.59 Aligned_cols=194 Identities=18% Similarity=0.275 Sum_probs=117.0
Q ss_pred EEEEEEeCC-EEEEEeCCCcEEEEEcCCC--------CCccccceeecCcc--ceEEEEEECCCEEEEecCCCcEEEEeC
Q 013881 232 VYAMAVGND-LLFAGTQDGAILAWKFNVT--------TNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 232 v~~l~~~~~-~l~~g~~dg~i~vwd~~~~--------~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~dg~i~vwd~ 300 (434)
+..+.+..+ .|+++..++.+........ +....+...+..|+ .+...+..-++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 555666655 7777777766655543221 11112222232222 233444445678999999999999998
Q ss_pred CCCeE-EEEEcc-ccccEE-EEEEcCCEEEEEe-----CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcE
Q 013881 301 ETLQC-IQTLTE-HTSVVM-SLLCWDQFLLSCS-----LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 301 ~~~~~-~~~~~~-~~~~v~-~l~~~~~~l~s~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
+.-.. .+.+.. |.+.-. ++.-.++.+.++. .-+..+.|+++..+.+.... .....+.+++-.|... .+
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~hp~qq--~~ 194 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSHPAQQ--HL 194 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhCCcccc--cE
Confidence 75111 111111 111111 1111133443332 23456677665443332222 2223377777776554 48
Q ss_pred EEEEeCCCeEEEEeCCCCcccccc--cccCcEEEEEecCCc--EEEEeCCCCCEEEEEccC
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKI--FAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~ 429 (434)
+++|+.||.+.+||.+.......+ .|+.+|..+-|+|.. .|+++++||.+.-||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999987555443 368999999999976 999999999999999875
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=0.00014 Score=64.83 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=152.6
Q ss_pred CCeEEEEeCCC--CceEEEEecCccccEEEEEccCCCCEEEEEECC---CcEEEEECCC--CceEE--EEecCC-c--eE
Q 013881 128 CKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCAS--GQCAG--VINLGG-E--VG 195 (434)
Q Consensus 128 d~~i~vwd~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~--~~~~~--~~~~~~-~--~~ 195 (434)
+.-|++|++.+ +......+-.+.+..+-|+|+|++++|+++-.+ |.|.-|.++. |+... .....+ + ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999883 222223334577889999999999999998665 6777777764 44332 222222 2 23
Q ss_pred EEEeCCCEEEEEc--CCcEEEEECCC-CceE---EecCCCCc----------EEEEEEeCC--EEEEEe-CCCcEEEEEc
Q 013881 196 CMISEGPWIFIGV--TNFVKAWNTQT-NTDL---SLSGPVGQ----------VYAMAVGND--LLFAGT-QDGAILAWKF 256 (434)
Q Consensus 196 ~~~~~~~~l~~~~--~~~i~~w~~~~-~~~~---~~~~~~~~----------v~~l~~~~~--~l~~g~-~dg~i~vwd~ 256 (434)
++..++++++++. .+.|.++-++. +... .+..|.+. +....+.|+ +|++.. .--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 3445788888864 57999998865 3322 33345444 788888888 444433 3457999999
Q ss_pred CCCCCccccceeecCccceEEEEEECC--CEEE-EecCCCcEEEEeCCCC-eEEEEEcc---------ccccEEEEEEc-
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVGA--NKLY-SGSMDNSIRVWNLETL-QCIQTLTE---------HTSVVMSLLCW- 322 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~-~~~~~~~~---------~~~~v~~l~~~- 322 (434)
..+.........+ .....-..|.|++ ++.+ ..-.+++|-+|..... ..+..++. ......+|..+
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 8664332222222 2233456777764 4544 4456899999998763 22222221 12233445444
Q ss_pred -CCEEEEEeC-CCcEEEEEcCCCCceEEEeeecCCcc--EEEEEeccCCCCCcEEEEEeC-CCeEEEEeCCC
Q 013881 323 -DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHG--VLALCGMPDSEGKPVLLCSCN-DNSVRFYDLPS 389 (434)
Q Consensus 323 -~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 389 (434)
|++|.++.. ...|.+|.+........+........ -..+.+.+.+ ++|+++.+ +..|.+|..+.
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g---~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG---RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC---CEEEEEccCCCcEEEEEEcC
Confidence 777777654 45788888876644333333222212 3444444333 36666664 45788887754
No 292
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=5.6e-06 Score=79.53 Aligned_cols=214 Identities=11% Similarity=0.030 Sum_probs=119.5
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--E---EEEEeCCC--cEEEEEcCCCCCccccceeecCccceEEEEEECC
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L---LFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~---l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 283 (434)
.|.+.|.+.+....+......+.+-.|+|+ . +++...+| .|.+.++..+.. +.+..+.+... ...++++|
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~-~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQL-MPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCcc-ceEECCCC
Confidence 455666666665556656666778899998 2 23454444 477777776532 33333333322 12334456
Q ss_pred CEEEEec-C----CCcEEEEeCCCC---eEEEEEccccccEEEEEEc--CCEEEEEe-CCCcEEEEE--cCCC-CceEEE
Q 013881 284 NKLYSGS-M----DNSIRVWNLETL---QCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWF--ATDS-GNLEVT 349 (434)
Q Consensus 284 ~~l~s~s-~----dg~i~vwd~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd--~~~~-~~~~~~ 349 (434)
+.|+..+ . +-.+.+|++..+ +..+....+........|+ ++.|+..+ .+|...+|. +... .....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 6666443 2 333445777652 3333332222333455666 66777655 466555554 4322 222222
Q ss_pred eeecCCccEEEEEeccCCCCCcEEEEEeC-C--CeEEEEeCCCCcccccccccCcEEEEEecCCc-EEE-EeCC--CCCE
Q 013881 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCN-D--NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFF-TGDG--TGQV 422 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~-s~~~--dg~i 422 (434)
.... ..+....|+|++. .|+..+. + ..|.+||+.+++..........+....|+||| .|+ ++.. ...|
T Consensus 323 t~~~--~~~~~p~wSPDG~---~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 323 TKKY--RNSSCPAWSPDGK---KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred ccCC--CCccceeECCCCC---EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2221 2345667777654 5554443 2 47999999988765443334466789999999 555 4433 4568
Q ss_pred EEEEccCCcc
Q 013881 423 RVWQWCNGPV 432 (434)
Q Consensus 423 ~iwd~~~g~~ 432 (434)
++|++.+++.
T Consensus 398 ~~vdl~~g~~ 407 (428)
T PRK01029 398 YLISLITKKT 407 (428)
T ss_pred EEEECCCCCE
Confidence 8889887753
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.68 E-value=0.00026 Score=65.14 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=122.0
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEec-C---c---cc-----cEEEEE-ccC-CCCEEEEEECCCcEEEEECCCCc
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-G---H---QK-----VVSGIT-LPS-GSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~-~---h---~~-----~V~~l~-~s~-~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
+++..+.=+..|.|+++|.++. .+..+. + . +. +..-+. |++ +|.+++..|. |...|.+...+-
T Consensus 276 sDGkrIvFq~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 3455566667788999999874 222222 1 0 11 111111 333 7888888887 557777766665
Q ss_pred eEEEEecCCceEE--EEeCC-CEEEEEcCC-cEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 184 CAGVINLGGEVGC--MISEG-PWIFIGVTN-FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 184 ~~~~~~~~~~~~~--~~~~~-~~l~~~~~~-~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
.++.-+.. .+.. +..++ ..+....++ .+-++|..+++...+...-+.|.++..+++ .++++.....|.+.|+.
T Consensus 353 ~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 55433322 2332 22333 344444566 899999999999999999999999999999 78888888999999999
Q ss_pred CCCCccccceeecCccceEEEEEECCC--EEEEecCC----CcEEEEeCCCCeEEEE
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMD----NSIRVWNLETLQCIQT 308 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~d----g~i~vwd~~~~~~~~~ 308 (434)
++. ....-+....-|+.+.|+++ +++-+--+ ..|+++|+..++....
T Consensus 432 ngn----v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 432 NGN----VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred CCC----eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 883 33333445667899999754 66655544 4699999998776543
No 294
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.3e-05 Score=77.08 Aligned_cols=235 Identities=15% Similarity=0.071 Sum_probs=126.2
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEE---EEEECCC--cEEEEECCCCceEEEEecCCceEEEEeCCCE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL---YSGSKDE--TVRVWDCASGQCAGVINLGGEVGCMISEGPW 203 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l---~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (434)
..|.+.|.+.+ .. +.+......+..-+|+|||+.+ ++...++ .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~-~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----------------- 225 (428)
T PRK01029 165 GELWSVDYDGQ-NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----------------- 225 (428)
T ss_pred ceEEEEcCCCC-Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----------------
Confidence 46777777654 33 3344455667778999999752 2444443 46666666654332
Q ss_pred EEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEE-EEeCCC----cEEEEEcCCCCCccccceeecCccceE
Q 013881 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQDG----AILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 204 l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg----~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
+....+......|+|| .|+ +...+| .+..|++..+... ........+....
T Consensus 226 ---------------------lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~ 283 (428)
T PRK01029 226 ---------------------ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQ 283 (428)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCc
Confidence 2222333445677777 333 333223 2334565542100 1112222222222
Q ss_pred EEEEE--CCCEEEEec-CCCcEEEE--eCCC-CeEEEEEccccccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCc
Q 013881 277 VSLVV--GANKLYSGS-MDNSIRVW--NLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGN 345 (434)
Q Consensus 277 ~~l~~--~~~~l~s~s-~dg~i~vw--d~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~ 345 (434)
....| +++.|+..+ .+|...+| ++.. +.....+..+...+....|+ ++.|+..+.+ ..|.+||+.+++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 33445 566666544 56654555 5432 33345555555556666676 6777766543 4699999987654
Q ss_pred eEEEeeecCCccEEEEEeccCCCCCcEEE-EEeC--CCeEEEEeCCCCcccccccccCcEEEEEecCC
Q 013881 346 LEVTYTHNEEHGVLALCGMPDSEGKPVLL-CSCN--DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPG 410 (434)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spd 410 (434)
.... .. ...+....|+|++. .|+ ++.. ...|+++|+.+++........+.+...+|+|-
T Consensus 364 ~~Lt-~~--~~~~~~p~wSpDG~---~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 YQLT-TS--PENKESPSWAIDSL---HLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EEcc-CC--CCCccceEECCCCC---EEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 3322 21 12345567776544 444 4432 35788999988765544445556777788874
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=7.2e-07 Score=85.28 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=156.3
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCC
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV 229 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~ 229 (434)
.....+++|+....+++.|+.||.++|-.+.+...-.....-.....+ .-..++.+|.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snL----------------------smNQtLeGH~ 71 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNL----------------------SMNQTLEGHN 71 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccccc----------------------chhhhhccCc
Confidence 456789999999999999999999999998765422111100000000 0012588999
Q ss_pred CcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE
Q 013881 230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC 305 (434)
Q Consensus 230 ~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 305 (434)
..|.-+.|+.+ .|-+...+|.|.+|-+-.+.-.. ...-....+.|.+++|+ |..+.....||.|.+=.++..+.
T Consensus 72 ~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E--EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE--EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred ceEEEEEeccccccccccCCCceEEEEeeecccHHH--HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 99999999887 78888999999999887663211 11112345668888885 77888888999887766654322
Q ss_pred E-EEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce-------EEEee--ecCCccEEEEEec-----cCCC
Q 013881 306 I-QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL-------EVTYT--HNEEHGVLALCGM-----PDSE 368 (434)
Q Consensus 306 ~-~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~--~~~~~~~~~~~~~-----~~~~ 368 (434)
. +.+++ .....+.|+ .+.++.+-..|.+.+||....-.. ..... ...+..+..+.|. +..+
T Consensus 150 wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 150 WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence 1 11221 112245555 345666677899999986533111 00000 0011123334433 3355
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCC
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
+.+.|+++-..|.+.|-.-.+......+...-.|....|+++| .|+.++.|
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 6779999999999988766554444444455778899999999 88888764
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=4.6e-05 Score=81.06 Aligned_cols=223 Identities=12% Similarity=0.106 Sum_probs=133.2
Q ss_pred CCEEEEE-cCCcEEEEECCCCceEEecC--------------CCCcEEEEEEeCC--EEEE-EeCCCcEEEEEcCCCCCc
Q 013881 201 GPWIFIG-VTNFVKAWNTQTNTDLSLSG--------------PVGQVYAMAVGND--LLFA-GTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 201 ~~~l~~~-~~~~i~~w~~~~~~~~~~~~--------------~~~~v~~l~~~~~--~l~~-g~~dg~i~vwd~~~~~~~ 262 (434)
+.+.++. ..+.|.++|........+.. .-.....++++++ .|++ -..++.|+++|+.++.
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-- 657 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-- 657 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE--
Confidence 3344443 35688889887654433222 1123567888764 4444 4456779999886642
Q ss_pred cccceeecC----------c-------cceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeEEEEEccc----------
Q 013881 263 FEPAASLKG----------H-------SLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEH---------- 312 (434)
Q Consensus 263 ~~~~~~~~~----------h-------~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------- 312 (434)
+..+.+ . -..-..++++ +..+++.+.++.|++||..++... .+.+.
T Consensus 658 ---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 658 ---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSS 733 (1057)
T ss_pred ---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCc
Confidence 111110 0 0112355654 345667778899999999876543 22111
Q ss_pred -----cccEEEEEEc--CC-EEEEEeCCCcEEEEEcCCCCceEEEeee----------c-C--------CccEEEEEecc
Q 013881 313 -----TSVVMSLLCW--DQ-FLLSCSLDKTIKVWFATDSGNLEVTYTH----------N-E--------EHGVLALCGMP 365 (434)
Q Consensus 313 -----~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------~-~--------~~~~~~~~~~~ 365 (434)
-.....++++ ++ .+++-+.++.|++||+.++......... . . -.....+++.+
T Consensus 734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 0123456666 45 4555666799999998865432111000 0 0 00123455544
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCccccccc--------------ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--------------AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
++ .++++-..++.|++||..++....... .-.....|+++++| .+++-+.++.|++||+.++
T Consensus 814 dG---~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 814 DG---QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CC---cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 33 377777889999999998765442211 11256789999999 8888899999999999988
Q ss_pred cc
Q 013881 431 PV 432 (434)
Q Consensus 431 ~~ 432 (434)
++
T Consensus 891 ~~ 892 (1057)
T PLN02919 891 EA 892 (1057)
T ss_pred cc
Confidence 75
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=3.1e-05 Score=66.84 Aligned_cols=233 Identities=13% Similarity=0.130 Sum_probs=129.2
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEE-EEecCcc---ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~-~~l~~h~---~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 193 (434)
.++.+++.-.|..|.|-...+.+.-+ .+.+-.+ -.=..++||||+.+||.+...|+|+++|+...+ +..+.....
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~ 85 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMS 85 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccc
Confidence 45677888889999998887664332 3333333 345679999999999999999999999987533 333322110
Q ss_pred eEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--------EEEEEeCCCcEEEEEcCCCC-Cccc
Q 013881 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--------LLFAGTQDGAILAWKFNVTT-NCFE 264 (434)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--------~l~~g~~dg~i~vwd~~~~~-~~~~ 264 (434)
. ...-...|..+.|-+. .|++-..+|.++-|-+..++ ..++
T Consensus 86 -----~-------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~ 135 (282)
T PF15492_consen 86 -----F-------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ 135 (282)
T ss_pred -----c-------------------------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce
Confidence 0 0011223333333211 45566677777777664321 1223
Q ss_pred cceee--cC-ccceEEEEEECCC--EEEEecC-CCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEE-EEeCCCc
Q 013881 265 PAASL--KG-HSLAVVSLVVGAN--KLYSGSM-DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLL-SCSLDKT 334 (434)
Q Consensus 265 ~~~~~--~~-h~~~v~~l~~~~~--~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~-s~s~dg~ 334 (434)
....+ .. +...|.++.+++. +|+.|+. ...-.. -++....+++...- +.+.. +...|+.
T Consensus 136 e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~-----------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 136 ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM-----------SKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc-----------ccccccCceEEEEcCCCCcEEEccccCccc
Confidence 33332 22 4668899999864 4555543 321000 00112222222221 22221 2221211
Q ss_pred ------EEEEEcCCCCceEEEee-ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 335 ------IKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 335 ------i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
-.+|.+-+ ...+.. ......+..+..+|++. +|++...+|.|.+|++++..+......
T Consensus 205 ~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 205 TASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cccccccceeeccc---eeeeeccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcchhhcccch
Confidence 12232211 111111 23346788898888776 999999999999999999887776654
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=5.3e-07 Score=88.45 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=137.2
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecC-CCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
...++..+....+..+|+.+.++..... ..+.|.-+..+...+++|...|+|.+-|.++. +.+.++..|++.|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC----ceeeeeeccccceee
Confidence 3445555667788889998888764443 33358888888889999999999999999887 889999999999999
Q ss_pred EEECCCEEEEecC---------CCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCC--
Q 013881 279 LVVGANKLYSGSM---------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSG-- 344 (434)
Q Consensus 279 l~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-- 344 (434)
+...|+.|++++. |..|+|||++..+.+..+.-+.++ .-+.|. ...+++++..|...+-|..+..
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 9999999998875 566899999988777666555444 223333 5688999999999999843322
Q ss_pred ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
.......+.....+.+++++++++ .++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~---alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGD---ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCc---eEEEecccCcEeeec
Confidence 233444445555688888877666 899999999999997
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.4e-05 Score=74.53 Aligned_cols=267 Identities=11% Similarity=0.065 Sum_probs=160.1
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC-ceEEEEeCCCEEEEEc------------CCcEEEEECC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFIGV------------TNFVKAWNTQ 218 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~------------~~~i~~w~~~ 218 (434)
.=+-+.|||.|.||+|--.-| |.+|--.+-..++.+.+++ ....+++...+|++-+ ...+.+||+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 346689999999999999888 9999887777777776654 3445566677776521 1489999999
Q ss_pred CCceE-EecC---CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEec
Q 013881 219 TNTDL-SLSG---PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGS 290 (434)
Q Consensus 219 ~~~~~-~~~~---~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s 290 (434)
+|... .+.. ....-.-+.|+.+ ++|--. ..+|.||+...- .++..-.-....|..+.|++. .|+-=.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-~~sisIyEtpsf----~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-GNSISIYETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEec-cceEEEEecCce----eeecccccCCccccCcccCCCcceEEEEc
Confidence 99876 2222 2222223567666 444433 367899986542 222222223445667777753 333211
Q ss_pred C-----CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe----------CCCcEEEEEcCCCCceEEEeeec
Q 013881 291 M-----DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS----------LDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 291 ~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
. -..+.+-.+.+++.+++-.-+.-.-..+.|. |++|+.-- .-..+.|+.++............
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 1 1245566666666666555444333344443 56665422 22245666666554433333333
Q ss_pred CCccEEEEEeccCCCCCcEEEEEeC--CCeEEEEeCCCC----cccccccccCcEEEEEecCCc-EEEEe---CCCCCEE
Q 013881 354 EEHGVLALCGMPDSEGKPVLLCSCN--DNSVRFYDLPSF----AERGKIFAKQEIRAIQLGPGG-LFFTG---DGTGQVR 423 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~----~~~~~~~~~~~v~~~~~spdg-~l~s~---~~dg~i~ 423 (434)
..+..++|-|.++ ++.+..+. ..++.+|.+++. +++..+. +...+.+.|+|.| .++.+ |..|.+.
T Consensus 446 --e~vi~FaWEP~gd--kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 --ESVIAFAWEPHGD--KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred --hheeeeeeccCCC--eEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceE
Confidence 3588888887765 24333333 457899988742 2222222 4567889999999 65554 4688999
Q ss_pred EEEccC
Q 013881 424 VWQWCN 429 (434)
Q Consensus 424 iwd~~~ 429 (434)
++|..-
T Consensus 521 F~D~~~ 526 (698)
T KOG2314|consen 521 FYDTDY 526 (698)
T ss_pred EEecch
Confidence 999873
No 300
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.61 E-value=8.4e-05 Score=77.66 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=137.5
Q ss_pred CCCEEEEEcCCcEEEE----ECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC--------------
Q 013881 200 EGPWIFIGVTNFVKAW----NTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-------------- 259 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w----~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~-------------- 259 (434)
...++++..+|.|.+. +...........-...|.+++|+|| +|+..+.+++|.+.+-.-.
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~ 166 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE 166 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence 4456666678888888 6666555555667789999999999 8888888888887642110
Q ss_pred ---------CC--cc-----c--------cc------eeecCccceEEEEEEC--CCEEEEecC---C---CcEEEEeCC
Q 013881 260 ---------TN--CF-----E--------PA------ASLKGHSLAVVSLVVG--ANKLYSGSM---D---NSIRVWNLE 301 (434)
Q Consensus 260 ---------~~--~~-----~--------~~------~~~~~h~~~v~~l~~~--~~~l~s~s~---d---g~i~vwd~~ 301 (434)
+. .| + +. ..+. +...-..|+|. |.++++.+. . ..||||+-
T Consensus 167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R- 244 (928)
T PF04762_consen 167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR- 244 (928)
T ss_pred CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-
Confidence 00 00 0 00 0011 23344667784 568877664 2 57999994
Q ss_pred CCeEEEEEccccccEEEEEEc--CCEEEEEeC---CCcEEEEEcCCCCceEEEeee--cCCccEEEEEeccCCCCCcEEE
Q 013881 302 TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL---DKTIKVWFATDSGNLEVTYTH--NEEHGVLALCGMPDSEGKPVLL 374 (434)
Q Consensus 302 ~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 374 (434)
+|++..+-..-.+--.+++|. |++|++.-. ...|.+|.-+.. ....+... .....+..+.|..++. +|+
T Consensus 245 eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~---iLA 320 (928)
T PF04762_consen 245 EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDSE---ILA 320 (928)
T ss_pred CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCCC---EEE
Confidence 476555444333334566665 778877764 345666653322 21222111 3445789999988877 888
Q ss_pred EEeCCCeEEEEeCCCCc----ccccccccCcEEEEEecCCc--EEEEeCCCCCEEEEEc
Q 013881 375 CSCNDNSVRFYDLPSFA----ERGKIFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 375 ~~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~ 427 (434)
.-..|. |.+|-..+.. ....+.....+..+.|+|.. .|...+.+|.+..+++
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 876554 9999988754 22222234455669999977 7777777788866654
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.7e-07 Score=82.00 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=142.2
Q ss_pred CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC-CCcEEEEeCCC
Q 013881 227 GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DNSIRVWNLET 302 (434)
Q Consensus 227 ~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~ 302 (434)
.|...|+.+..... ++++++.||.++.|.-..- ...+.+..+..|...+.+++.+ +-++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 47777877777655 9999999999999975541 1124556667788887776664 567778677 99999999987
Q ss_pred CeEEEEEcc--ccccEEEEEEcCC---EEEE-EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 303 LQCIQTLTE--HTSVVMSLLCWDQ---FLLS-CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 303 ~~~~~~~~~--~~~~v~~l~~~~~---~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
...+..++. -.+.+..+...++ .+++ .-.++.|.|+|-....+........+..++..+.+.+..+ .+++.
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D---s~vSi 162 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD---SAVSI 162 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc---ceeec
Confidence 665533322 2233322222232 3333 3457999999987666555555555556788888877666 67777
Q ss_pred eCCCeEEEEeCCC-Cc-----cccccc----------ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 377 CNDNSVRFYDLPS-FA-----ERGKIF----------AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 377 ~~dg~i~iwd~~~-~~-----~~~~~~----------~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
...|.|.-|..+. .+ ....+. .+....++.|+|++ .+.+-+.|..|+++.+.+|+++
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 7889999999873 11 111121 25668899999999 9999999999999999999876
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.60 E-value=8.6e-07 Score=79.29 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=94.6
Q ss_pred CCEEEEecCCCcEEEEeCCCCe----EEEEEcc--ccccEEEEEEcCCEEEEE---eCCCcEEEEEcCCCCceEEEeeec
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQ----CIQTLTE--HTSVVMSLLCWDQFLLSC---SLDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~--~~~~v~~l~~~~~~l~s~---s~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
+.+++.+..+....+++++... ++..... -...+..+..+ .....+ +....+.+|.... .......+|.
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~-~~~~~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADS-GRCEPILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccc-cCcchhhhhh
Confidence 4567777777776676665433 2222211 12222333222 233333 3344555555444 3334444444
Q ss_pred CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc--cccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--FAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
..++.+++++++. +|+++..|..|++-.++.-..+..+ .|+.-|..++.-++..|++++.|++|++||+.+|+
T Consensus 152 --Sml~dVavS~D~~---~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 152 --SMLLDVAVSPDDQ---FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred --hhhheeeecCCCC---EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 4588899988775 9999999999999888776555554 36888999999887789999999999999999998
Q ss_pred cc
Q 013881 432 VA 433 (434)
Q Consensus 432 ~~ 433 (434)
..
T Consensus 227 ~L 228 (390)
T KOG3914|consen 227 LL 228 (390)
T ss_pred cc
Confidence 53
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=4.4e-05 Score=64.88 Aligned_cols=267 Identities=16% Similarity=0.153 Sum_probs=141.6
Q ss_pred ceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEE-EEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 111 DILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSG-ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 111 ~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~-l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
.|-|.+. ..+.++.|...+.+++-+..+| +....+..- +.|.+ -...+++.++..|+.|++.+.-|..+..++...
T Consensus 54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eeeeeeEEECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 4444444 4556888999999999999999 666665533 23322 334678999999999999999999999999888
Q ss_pred ecCCceEE---EEe-CCCEEEEEcCCcEEEEECCCCceEEec--CCCCcEEEE-EEeCCEEEEEeCCCcEE--------E
Q 013881 189 NLGGEVGC---MIS-EGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQVYAM-AVGNDLLFAGTQDGAIL--------A 253 (434)
Q Consensus 189 ~~~~~~~~---~~~-~~~~l~~~~~~~i~~w~~~~~~~~~~~--~~~~~v~~l-~~~~~~l~~g~~dg~i~--------v 253 (434)
+.++.+.. +.. ++.+.++...|.+..-+........+- ...++|.+- .+-...+..++.||.+. +
T Consensus 132 kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qv 211 (354)
T KOG4649|consen 132 KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQV 211 (354)
T ss_pred ccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEE
Confidence 77765432 233 455566666776666665555322111 112222221 11111333444455444 4
Q ss_pred EEcCCCCCccccceeecCccceE-EEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc------CCE
Q 013881 254 WKFNVTTNCFEPAASLKGHSLAV-VSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW------DQF 325 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~~~v-~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~------~~~ 325 (434)
|...++.. +..-...+.+. ..+.+. .+-+++...-..-.+|..+++...+..-..+ ..+.+. +++
T Consensus 212 wr~~t~Gp----If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~l 284 (354)
T KOG4649|consen 212 WRPATKGP----IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKL 284 (354)
T ss_pred EeecCCCc----eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhh
Confidence 44444321 11111111111 222221 2233333322334466666664433322111 111111 457
Q ss_pred EEEEeCCCcEEEEEcCC--------CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 326 LLSCSLDKTIKVWFATD--------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
|..++.||++.|.-.+. +.+++.+....-...+ -.+|.--++ .|+.|+.|..|+-||+.+.
T Consensus 285 l~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eI---FsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 285 LRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEI---FSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhcCCCcEEEEEecccccccccCCCccceEEEeecCccc---ccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 77888999998884332 1222222221111111 111211122 5788999999999999874
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=0.00028 Score=63.56 Aligned_cols=262 Identities=13% Similarity=0.152 Sum_probs=156.6
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC----------CCcEEEEECCCCceEEEEecCCc--e--
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE--V-- 194 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~--~-- 194 (434)
+.+++.|.+++ +.+-.+.. +-.-.+..+||++.+++++. .-.|.+||..+.+....+..+.. .
T Consensus 17 ~rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47999999988 77766653 22333667999999987542 45799999999999888877653 1
Q ss_pred ------EEEEeCCCEEEEEc---CCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcc-c
Q 013881 195 ------GCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF-E 264 (434)
Q Consensus 195 ------~~~~~~~~~l~~~~---~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~-~ 264 (434)
..+..+++++++.. ...|.+.|++.++.+....-.+...-.-..++.+.+-|.||++.-..+....+.. +
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 23344777777643 4588888888888775444444444444455688899999999999998543321 1
Q ss_pred cceeecCccceEE-EEEE--CCCEEEEecCCCcEEEEeCCCCeEE--EEEccc----------cccEEEEEEc--CCEEE
Q 013881 265 PAASLKGHSLAVV-SLVV--GANKLYSGSMDNSIRVWNLETLQCI--QTLTEH----------TSVVMSLLCW--DQFLL 327 (434)
Q Consensus 265 ~~~~~~~h~~~v~-~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~----------~~~v~~l~~~--~~~l~ 327 (434)
....+.....++. .-.+ .++.++--+.+|.|+--|+...... ..+..- .+.-.-++++ .+.|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1111222222222 1122 3456666788999999888765422 222110 0111223443 33333
Q ss_pred EEeC--------C--CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE-eCCCeEEEEeCCCCcccccc
Q 013881 328 SCSL--------D--KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSFAERGKI 396 (434)
Q Consensus 328 s~s~--------d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 396 (434)
+--. | ..|-++|+.+.+.+..+.... .+.++..+.+ +.++|++. ..++.|.+||..+++.+..+
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd--~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQD--DKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESS--SS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccC--CCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 3211 1 247777888887776665432 3445655543 34566654 46899999999999998887
Q ss_pred cc
Q 013881 397 FA 398 (434)
Q Consensus 397 ~~ 398 (434)
..
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 65
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=0.00029 Score=60.03 Aligned_cols=294 Identities=14% Similarity=0.085 Sum_probs=157.9
Q ss_pred CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEE---
Q 013881 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--- 196 (434)
Q Consensus 120 ~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--- 196 (434)
..++.|+..+.+..-|..+| +++..-. -...|.+-+.- -|++++.|...|.+++-+..+|.....+..-+.+.+
T Consensus 24 T~v~igSHs~~~~avd~~sG-~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG-NLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCC-cEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 45677888888888888888 4443322 12233332222 467899999999999999999988887776665543
Q ss_pred EEeCCCEEEEEc-CCcEEEEECCCCceEEecCCCCc-EEEEEEeC--CEEEEEeCCCcEEEEEcCCCCCccccceeecCc
Q 013881 197 MISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQ-VYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGH 272 (434)
Q Consensus 197 ~~~~~~~l~~~~-~~~i~~w~~~~~~~~~~~~~~~~-v~~l~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 272 (434)
+.+++.++.++. |+..+..|..+...+-...-.+. ..+-+..+ ..|+.+...|.+.--..+... ...+-.|
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~-----~~~~w~~ 175 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS-----STEFWAA 175 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCC-----cceehhh
Confidence 345788888876 78999999998876632222222 22223333 367777777776665544431 1111111
Q ss_pred --cceEEEE-EECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEE-----------EEEEc-CCEEEEEeCCCcEEE
Q 013881 273 --SLAVVSL-VVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM-----------SLLCW-DQFLLSCSLDKTIKV 337 (434)
Q Consensus 273 --~~~v~~l-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~-----------~l~~~-~~~l~s~s~dg~i~v 337 (434)
..++.+- .+-+..+..+.-||.+.-+| ..|+.+..+. ..++|. .+.+. .+.+.+.-.-..-.+
T Consensus 176 ~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 176 TRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLL 253 (354)
T ss_pred hcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEE
Confidence 1122111 11133344445555555555 4444444332 122221 11121 222222222223345
Q ss_pred EEcCCCCceEEEeeecCCccEEEEEec-cCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-cc---CcEEEEE-----e
Q 013881 338 WFATDSGNLEVTYTHNEEHGVLALCGM-PDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AK---QEIRAIQ-----L 407 (434)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~---~~v~~~~-----~ 407 (434)
|..+.+.........+- .+.+. +.....++|..++.||.+.|.-.... +..+. +. +.+.++. |
T Consensus 254 w~~~~g~t~~vy~~p~l-----~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIF 326 (354)
T KOG4649|consen 254 WATQSGTTLHVYLSPKL-----RFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIF 326 (354)
T ss_pred EEecCCcEEEEEeCccc-----ceeccCCCCcchhhhhhhcCCCcEEEEEeccc--ccccccCCCccceEEEeecCcccc
Confidence 65555433322222111 11111 11222357888889999988744321 11111 11 1222222 2
Q ss_pred -cC---CcEEEEeCCCCCEEEEEccCC
Q 013881 408 -GP---GGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 408 -sp---dg~l~s~~~dg~i~iwd~~~g 430 (434)
|| +|+|+.|+.|..|+-||+.+.
T Consensus 327 sSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 327 SSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cCCeEEccEEEEEEccCeEEEEecccc
Confidence 33 568999999999999999875
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-06 Score=74.82 Aligned_cols=234 Identities=14% Similarity=0.217 Sum_probs=146.4
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc-e----EEEEecC-------------CceEEEE---e--CCCEEE
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-C----AGVINLG-------------GEVGCMI---S--EGPWIF 205 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~----~~~~~~~-------------~~~~~~~---~--~~~~l~ 205 (434)
..+.|+++.|...|.||++|...|.|.++.-+... | ...++.+ +.+..+- . ...+|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999865442 1 1112211 2222222 1 355888
Q ss_pred EEcCCcEEEEECCCCc-------------------------------------e-------EEecCCCCcEEEEEEeCC-
Q 013881 206 IGVTNFVKAWNTQTNT-------------------------------------D-------LSLSGPVGQVYAMAVGND- 240 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~-------------------------------------~-------~~~~~~~~~v~~l~~~~~- 240 (434)
++.+.+|++|.+.... . +....|...|.++.++.+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8999999999875441 0 011357778889999888
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCc-----cceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEE------
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-----SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCI------ 306 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~------ 306 (434)
..+....|-.|.+|++......+..+ ..+.| ..-|++..|++ +.+.-.+..|.|++-|+++..+-
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 55566778899999988766554332 22333 23456666764 46777788999999999853211
Q ss_pred ----------EEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe-eecC----------Cc---cEEE
Q 013881 307 ----------QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY-THNE----------EH---GVLA 360 (434)
Q Consensus 307 ----------~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~----------~~---~~~~ 360 (434)
.-+.+-...|..+.|+ ++++++-+ --+|+|||++......... .|.. .. .-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1122234556777887 45666544 4689999998765433322 2211 01 1223
Q ss_pred EEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
+.|+.+.. .+++|+..+..-||-.
T Consensus 343 isfSgd~~---~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDK---HVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcc---cccccccccceeeecc
Confidence 44443322 6777777776666653
No 307
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=5.7e-05 Score=73.19 Aligned_cols=224 Identities=11% Similarity=0.009 Sum_probs=120.7
Q ss_pred cEEEEECCCCceEEEEecCCceE--EEEeCCCEEEEEc--C--CcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEE
Q 013881 173 TVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV--T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLF 243 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~--~--~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~ 243 (434)
.|.++|...............+. .+.+++..++... + ..|.++|+.+++...+...........|+|+ +++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 57777876654433333333333 4456777666542 2 2688999988876555444444557889998 445
Q ss_pred EEeCCCc--EEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEec-CCC--cEEEEeCCCCeEEEEEccccccE
Q 013881 244 AGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-MDN--SIRVWNLETLQCIQTLTEHTSVV 316 (434)
Q Consensus 244 ~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v 316 (434)
+...+|. |+++|+.++. ...+..+........|+ ++.|+..+ .++ .|+++|+.+++... +.......
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~-----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKA-----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEeCCCCeEEEEEECCCCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 5666775 7777776542 22333343344455554 55655443 333 57777887776433 22222222
Q ss_pred EEEEEc--CCEEEEEeC-CC--cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC--eEEEEeCCC
Q 013881 317 MSLLCW--DQFLLSCSL-DK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN--SVRFYDLPS 389 (434)
Q Consensus 317 ~~l~~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 389 (434)
....|+ +++|+..+. ++ .|.++|+.++.. ..+.... ......|+|++. .++++...++ .+++++..
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~---~d~~ps~spdG~--~I~~~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR---LDESPSVAPNGT--MVIYSTTYQGKQVLAAVSID- 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC---CCCCceECCCCC--EEEEEEecCCceEEEEEECC-
Confidence 333454 677766554 34 355567766543 2222111 111235655543 3444444444 37777774
Q ss_pred Ccccccccc-cCcEEEEEecC
Q 013881 390 FAERGKIFA-KQEIRAIQLGP 409 (434)
Q Consensus 390 ~~~~~~~~~-~~~v~~~~~sp 409 (434)
+.....+.. .+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 444444433 45677778887
No 308
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.53 E-value=0.00021 Score=76.20 Aligned_cols=233 Identities=14% Similarity=0.142 Sum_probs=136.2
Q ss_pred EEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCC---------------ceEEE--EeCCCEEEEEc--CCcEEE
Q 013881 155 GITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGG---------------EVGCM--ISEGPWIFIGV--TNFVKA 214 (434)
Q Consensus 155 ~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---------------~~~~~--~~~~~~l~~~~--~~~i~~ 214 (434)
.++++++ +.++++-+..+.|+++|.. ++.+..+...+ ....+ ..++..|+++. .+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5778764 5667777778899999986 44444443211 11222 23455555543 468899
Q ss_pred EECCCCceEEecCC-----------------CCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc-cc---cceeec
Q 013881 215 WNTQTNTDLSLSGP-----------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC-FE---PAASLK 270 (434)
Q Consensus 215 w~~~~~~~~~~~~~-----------------~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~-~~---~~~~~~ 270 (434)
+|..++...++.+- -.....++++++ ++++.+.++.|++||...+... +. ......
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCC
Confidence 99888766544221 123457889873 6667778899999998765210 00 000000
Q ss_pred Cc------cceEEEEEEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEcc-------------cc--------ccEEEEE
Q 013881 271 GH------SLAVVSLVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTE-------------HT--------SVVMSLL 320 (434)
Q Consensus 271 ~h------~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-------------~~--------~~v~~l~ 320 (434)
++ -.....++++ ++ .+++-+.++.|++||+.++.......+ .. .....++
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 11 1123445554 45 455666789999999987653211100 00 0124566
Q ss_pred Ec--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC------------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 321 CW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 321 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
++ ++.+++-+.++.|++||..+..... +..... -.....+++.+++ +++++-+.++.|++||
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG---~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENG---RLFVADTNNSLIRYLD 886 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCC---CEEEEECCCCEEEEEE
Confidence 65 6677888889999999987654332 221110 0123455665443 3788888899999999
Q ss_pred CCCCcc
Q 013881 387 LPSFAE 392 (434)
Q Consensus 387 ~~~~~~ 392 (434)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988754
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=5.2e-06 Score=71.95 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=127.2
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc-cccceeecCccc------------eEEEEEEC----CCEEEE
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-FEPAASLKGHSL------------AVVSLVVG----ANKLYS 288 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~------------~v~~l~~~----~~~l~s 288 (434)
....|+++.|... +|++|...|.|.+|.-.....+ ++....+++|.. .|..+.|- .+.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467888999776 8899988999999976544321 233444555542 34556652 236888
Q ss_pred ecCCCcEEEEeCCCCeE-------------------------------------E-----EEE-ccccccEEEEEEc-CC
Q 013881 289 GSMDNSIRVWNLETLQC-------------------------------------I-----QTL-TEHTSVVMSLLCW-DQ 324 (434)
Q Consensus 289 ~s~dg~i~vwd~~~~~~-------------------------------------~-----~~~-~~~~~~v~~l~~~-~~ 324 (434)
.+.|.+|++|.+..... + +.. ..|.--+.+++++ .+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998764310 0 001 2466667788887 44
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEee---ecCC---ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-----
Q 013881 325 FLLSCSLDKTIKVWFATDSGNLEVTYT---HNEE---HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER----- 393 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----- 393 (434)
..+..+.|-.|.+|++.-......+.. +..+ .-+.+..|+|... .++.-++..|.|++-|++...+.
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--n~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--NVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--ceEEEecCCCcEEehhhhhhhhccCchh
Confidence 455556688999998875443222222 1111 2355566666543 36777888999999999843211
Q ss_pred -cccc-----------ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 394 -GKIF-----------AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 394 -~~~~-----------~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.... ....|..+.|+++| ++++-+ --+|+|||+...+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 1110 13458899999999 666554 4689999987543
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=5.6e-06 Score=80.51 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=134.2
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEE
Q 013881 229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT 308 (434)
Q Consensus 229 ~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 308 (434)
...+++++++...|+.|+.+|.|++++.... + .....|+.. ...|.++++++.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-----P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc-----c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567788888889999999999999988754 2 333334333 44688999999999999999988877766
Q ss_pred EccccccEEEEEEcC-------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 309 LTEHTSVVMSLLCWD-------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 309 ~~~~~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
+. ...++.++++++ +.+++|+.-| +.++.-+-.+.......+.....+.++.|.. . ++|-++.+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~---lIAWand~G- 180 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--N---LIAWANDDG- 180 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC--c---EEEEecCCC-
Confidence 63 456788888874 4789999888 8887544334444445666778899998863 2 788776655
Q ss_pred EEEEeCCCCccccccccc-------CcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 382 VRFYDLPSFAERGKIFAK-------QEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~~-------~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
|++||+.+.+.+..+... .--..+.|.++..|+.|-.| +|+|..++.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEec
Confidence 899999998887776531 12346788887777777665 588888873
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.44 E-value=0.00031 Score=60.83 Aligned_cols=191 Identities=19% Similarity=0.195 Sum_probs=107.3
Q ss_pred CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc-cccceeec-CccceEEEEEEC-----CC---EEEEecCCCc
Q 013881 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-FEPAASLK-GHSLAVVSLVVG-----AN---KLYSGSMDNS 294 (434)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~-~h~~~v~~l~~~-----~~---~l~s~s~dg~ 294 (434)
....+=.-++|++| +|+.+...|+|+++|+...... ..+..... .-...|..+.|- .+ .|++-..+|.
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 34445667999999 8999999999999998753210 01111111 123455556552 12 4777778888
Q ss_pred EEEEeCCC-----CeEEEEEc--c-ccccEEEEEEcC--CEEEEEeCCCc-EEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 295 IRVWNLET-----LQCIQTLT--E-HTSVVMSLLCWD--QFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 295 i~vwd~~~-----~~~~~~~~--~-~~~~v~~l~~~~--~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
++-|-+.. .+...++. . +...|.++.+++ ++|++|+.... -..+ ......+.+...
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s-------------~a~~~GLtaWRi 187 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS-------------KASSCGLTAWRI 187 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc-------------cccccCceEEEE
Confidence 88776532 23333333 2 467899999983 46666654321 0000 011123333333
Q ss_pred ccCCCCCcEEEEEeCCCe------EEEEeCCCCccccc-ccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 364 MPDSEGKPVLLCSCNDNS------VRFYDLPSFAERGK-IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~-~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
..+.+-- ..++...|+. ..+|.+.+...... ......|..|..|||| .||+...+|.|.+|++.+=.
T Consensus 188 L~~~Pyy-k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 188 LSDSPYY-KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cCCCCcE-EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 3333211 1112222221 23344433322222 2236789999999999 99999999999999997643
No 312
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.8e-05 Score=74.76 Aligned_cols=160 Identities=11% Similarity=0.116 Sum_probs=114.6
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
..+|++-..+.+..|+.-|.+++|+-..++..+....+-.+.+..+..+++..++|.|+..|.|.++.+.....-.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 56788888888999999999999998887555666666667777788899999999999999999998876432211000
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
+. --..|...|++++|+++ .+++|...|+|..-.++...........
T Consensus 117 ---------------t~----------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 117 ---------------TP----------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred ---------------cc----------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 00 01237899999999999 9999999999999988873211233344
Q ss_pred ecCccceEEEEEECCCEEEEecCCCcEEEEeCCC
Q 013881 269 LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 269 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 302 (434)
+..-...|..+.....+|+.++.-.. .+++++.
T Consensus 166 il~~ds~IVQlD~~q~~LLVStl~r~-~Lc~tE~ 198 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYLQSYLLVSTLTRC-ILCQTEA 198 (726)
T ss_pred eeccCcceEEeecccceehHhhhhhh-heeecch
Confidence 44556778888887666655544433 3455543
No 313
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.38 E-value=0.00045 Score=62.52 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=137.8
Q ss_pred EEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE-------
Q 013881 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG------- 186 (434)
Q Consensus 114 c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~------- 186 (434)
|.+-..+.++.|+.+| |++++........+..+ ...|..|...++-+.|+.-+ |+.+.++++..-....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3444567788998888 99999844324444333 23499999999888777665 4999999987664443
Q ss_pred --------EEecCCceEEEE-----eCCCEEEEEcCCcEEEEECCCC-----ceEEecCCCCcEEEEEEeCCEEEEEeCC
Q 013881 187 --------VINLGGEVGCMI-----SEGPWIFIGVTNFVKAWNTQTN-----TDLSLSGPVGQVYAMAVGNDLLFAGTQD 248 (434)
Q Consensus 187 --------~~~~~~~~~~~~-----~~~~~l~~~~~~~i~~w~~~~~-----~~~~~~~~~~~v~~l~~~~~~l~~g~~d 248 (434)
.+.....+..+. .....+++.....|.+|..... .......-...+.+++|.++.++.|..+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~ 157 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK 157 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC
Confidence 122222333333 2455777777888888876553 2223334458889999999988888865
Q ss_pred CcEEEEEcCCCCCccccceeec----------CccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEE--EEccccccE
Q 013881 249 GAILAWKFNVTTNCFEPAASLK----------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVV 316 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v 316 (434)
+ ..+.|+.+... ..+.... ....++..+..+.+.++.+. |..-...|. .|+..+ .+.- ....
T Consensus 158 ~-f~~idl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p 231 (275)
T PF00780_consen 158 G-FYLIDLNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQW-SSAP 231 (275)
T ss_pred c-eEEEecCCCCc--eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEc-CCch
Confidence 5 77888886532 1111111 12234555555544333333 333333343 444333 2322 3356
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 317 ~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
.++.+...+|++.+.+ .|.||++.+++.++.+.
T Consensus 232 ~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 232 QSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred hEEEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 6777787888887764 59999999987665554
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=0.0021 Score=61.36 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=65.4
Q ss_pred EEEEcCCCCce-EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EE
Q 013881 336 KVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LF 413 (434)
Q Consensus 336 ~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l 413 (434)
.+|++...+.. ..+........+.+.+++|+.+ .++.|+.||+|.+||...+..... ...-..+.++|+|+| .+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~---kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSED---KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccc---eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence 45665443211 1222334445677788777655 899999999999999977533322 334557899999999 99
Q ss_pred EEeCCCCCEEEEEccCCc
Q 013881 414 FTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 414 ~s~~~dg~i~iwd~~~g~ 431 (434)
++|+..|.+.+||+.-..
T Consensus 315 ~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCceEEEEEeecCc
Confidence 999999999999987543
No 315
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.32 E-value=0.00036 Score=64.30 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=134.6
Q ss_pred EEEeCCCEEEEEcCCcEEEEECCCCceEEecCC-------CCc--E------EEEEEeC-CEEEEEeCCCcEEEEEcCCC
Q 013881 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-------VGQ--V------YAMAVGN-DLLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 196 ~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~-------~~~--v------~~l~~~~-~~l~~g~~dg~i~vwd~~~~ 259 (434)
.+..+++.++....|.|.++|.++.....+.-. ..+ + ...+..+ ++++..+. |...+.+...+
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 345688899999999999999988765432211 000 1 1111122 24544443 56666655443
Q ss_pred CCccccceeecCccceEEEEEE--CCCEEEEecCCC-cEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCc
Q 013881 260 TNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT 334 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~ 334 (434)
.....+|...|.-..+ +++-++.|..|| .|-|+|.++++. ..+...-+.|.++..+ |++++++.....
T Consensus 352 ------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 352 ------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred ------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 1122245555654444 567899999999 999999988764 4555667788888887 678999988899
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC----eEEEEeCCCCcccccccccCcEEEEEecCC
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN----SVRFYDLPSFAERGKIFAKQEIRAIQLGPG 410 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~spd 410 (434)
|.+.|+.++... ........-++.+.|+|++. ++|-+--+| .|+++|+..++..........=.+-+|.||
T Consensus 425 l~vididngnv~--~idkS~~~lItdf~~~~nsr---~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 425 LWVIDIDNGNVR--LIDKSEYGLITDFDWHPNSR---WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred EEEEEecCCCee--EecccccceeEEEEEcCCce---eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 999999877543 23334446788999988766 888877665 689999998776655443333345578888
Q ss_pred c
Q 013881 411 G 411 (434)
Q Consensus 411 g 411 (434)
+
T Consensus 500 ~ 500 (668)
T COG4946 500 G 500 (668)
T ss_pred C
Confidence 8
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.31 E-value=0.00049 Score=63.76 Aligned_cols=171 Identities=14% Similarity=0.184 Sum_probs=110.4
Q ss_pred CcEEEEEcCCCC---CccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCe-EEEEEc-cccccEEEEEEcC
Q 013881 249 GAILAWKFNVTT---NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ-CIQTLT-EHTSVVMSLLCWD 323 (434)
Q Consensus 249 g~i~vwd~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~-~~~~~v~~l~~~~ 323 (434)
|.|.++++.... ..++.+.. ....++|+++..-+++|+++. .+.|.+|++...+ ....-. .....+.++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 889999998741 11222222 234678999887666655444 4899999998877 433222 2344788888889
Q ss_pred CEEEEEeCCCcEEEEEcCCC-CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC-------c----
Q 013881 324 QFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF-------A---- 391 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~---- 391 (434)
+++++|.....+.++..+.. ..+..+........+.++.+..+.+ .++++..+|.|.++..+.. .
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 99999999999999866553 3355555555567788888876553 7899999999999988631 1
Q ss_pred ccccccccCcEEEE---EecC--Cc-------EEEEeCCCCCEEE
Q 013881 392 ERGKIFAKQEIRAI---QLGP--GG-------LFFTGDGTGQVRV 424 (434)
Q Consensus 392 ~~~~~~~~~~v~~~---~~sp--dg-------~l~s~~~dg~i~i 424 (434)
....+.....|+++ .+.| .+ .++.++.+|.|.+
T Consensus 217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 12222336778888 5555 22 3888889999884
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.2e-06 Score=85.82 Aligned_cols=269 Identities=14% Similarity=0.144 Sum_probs=164.5
Q ss_pred CCCcCCCCCCCCCccc---ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCC
Q 013881 89 SNNYRAGNSKNSNINN---RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD 163 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~---~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~ 163 (434)
..+|+......+++.. ...|....+|++|+.+ .++.|+-.|.|+++++.+| .......+|..+|+-+.=+.||.
T Consensus 1078 ~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1078 HGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred ccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcc
Confidence 3456665555555544 4456678999999654 5888999999999999999 88888999999999999999998
Q ss_pred EEEEEECCC--cEEEEECCC-CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC
Q 013881 164 KLYSGSKDE--TVRVWDCAS-GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (434)
Q Consensus 164 ~l~s~s~dg--~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~ 240 (434)
.+++.+.-. ...+|++.+ +...++| ..-.++.|+..
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------------------------------------~ed~~vkFsn~ 1195 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSF-----------------------------------------DEDKAVKFSNS 1195 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccc-----------------------------------------cccceeehhhh
Confidence 887765533 467888754 2222222 22346667666
Q ss_pred --EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEE
Q 013881 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317 (434)
Q Consensus 241 --~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 317 (434)
.-+.|+......+||+.+............+....-....|++. .|+. .|| .+||++..+.++.|...+..+.
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~ 1271 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGG 1271 (1516)
T ss_pred HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheeccc
Confidence 44566666788999999885332212222222222244455542 2222 344 3699998888877765443322
Q ss_pred E-EEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-------------CC----
Q 013881 318 S-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-------------ND---- 379 (434)
Q Consensus 318 ~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~d---- 379 (434)
. +..++..++.-+ .|||+++...+........ ..+.|...+. +++..- .+
T Consensus 1272 G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq----c~VtFNstG~---VmYa~~~~~d~~sdvh~~r~k~p~f 1339 (1516)
T KOG1832|consen 1272 GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ----CAVTFNSTGD---VMYAMLNIEDVMSDVHTRRVKHPLF 1339 (1516)
T ss_pred ccccCCCceEEeec-----hhhhhHHHHHHhcCccccc----eEEEeccCcc---chhhhhhhhhhhhhhcccccccchh
Confidence 2 222356666655 4899988765544433221 2333332221 221111 00
Q ss_pred CeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEE
Q 013881 380 NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 380 g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s 415 (434)
...+.+|....+.+.++.....|..++-+|.. +|..
T Consensus 1340 SSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1340 SSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred hhhccccccccccceeeecccchhhhhcCCccceEEE
Confidence 13456666667777777777778888887766 5554
No 318
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00014 Score=68.54 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=133.7
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE-EE-ecCCceEEEEeCCCEEEEEcCCcEEEEECCC--------Cc
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VI-NLGGEVGCMISEGPWIFIGVTNFVKAWNTQT--------NT 221 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~--------~~ 221 (434)
.|+.+.|.++..-|+.+...|.|.||.+...+.-. .- .......... +...+..-.+-|+.. +-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR------FSLNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc------ccccCCCcceEEehhhCCccccccc
Confidence 58999999999999999999999999876543322 00 0000000000 000001111122211 00
Q ss_pred --eEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccc-ccee---ecCccceEEEEEEC-----CC-----
Q 013881 222 --DLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFE-PAAS---LKGHSLAVVSLVVG-----AN----- 284 (434)
Q Consensus 222 --~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~-~~~~---~~~h~~~v~~l~~~-----~~----- 284 (434)
...+....++|++++.+.- ++++|.++|.+.|.|++...-.+. .+.. .......++++.|. ++
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 1134445789999999766 999999999999999987632111 0011 11133456777763 22
Q ss_pred EEEEecCCCcEEEEeCC--C-Ce----EEEEEccccccEEEEEEc----C-------------------CEEEEEeCCCc
Q 013881 285 KLYSGSMDNSIRVWNLE--T-LQ----CIQTLTEHTSVVMSLLCW----D-------------------QFLLSCSLDKT 334 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~--~-~~----~~~~~~~~~~~v~~l~~~----~-------------------~~l~s~s~dg~ 334 (434)
.+++|+..|.+.+|.+. . +. .......+.++|..+..- + ..++....+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 58899999999999874 1 21 112222455666555532 0 23555566889
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccC--CCCCcEEEEEeCCCeEEEEeCCCCccccccccc-----CcEEEEEe
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPD--SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAK-----QEIRAIQL 407 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~ 407 (434)
++++...+.+...... .....+..+++.+. ......|++-..+|.|++|.++..+++...... ..+....+
T Consensus 237 irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred eEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 9999887766555444 22222333334321 123347888889999999999998887765532 22445667
Q ss_pred cCCc-EEEEeCCCCCEEEEEc
Q 013881 408 GPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd~ 427 (434)
+++| .++-.+ ...+.++.+
T Consensus 315 s~~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 315 SRNGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp -TTS-EEEE-S-SSEEEEEEE
T ss_pred CCCCCEEEEeC-cccEEEEEE
Confidence 8888 443333 233444443
No 319
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.29 E-value=0.0014 Score=64.79 Aligned_cols=185 Identities=14% Similarity=0.040 Sum_probs=110.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCc--eEE-----------EEeCCCEEEEEcCCcEEEEECCCCceEE-ec-
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGE--VGC-----------MISEGPWIFIGVTNFVKAWNTQTNTDLS-LS- 226 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~i~~w~~~~~~~~~-~~- 226 (434)
+..|+.++.++.|.-.|..+|+.+-.+..... ... ...++.+++...++.+..+|.++++.+- ..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 45677777888899999999998887765322 110 1224455555668999999999999872 21
Q ss_pred -CCC--CcEE-EEEEeCCEEEEEeC------CCcEEEEEcCCCCCccccceeecC-------------------------
Q 013881 227 -GPV--GQVY-AMAVGNDLLFAGTQ------DGAILAWKFNVTTNCFEPAASLKG------------------------- 271 (434)
Q Consensus 227 -~~~--~~v~-~l~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------------- 271 (434)
.+. ..+. .-....+.++++.. +|.|..+|.++++..++.......
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 111 1111 12233456666543 688999999887543321111000
Q ss_pred -c-cceE-EEEEECC--CEEEEecCC-----C-----------cEEEEeCCCCeEEEEEcccccc-----------EEEE
Q 013881 272 -H-SLAV-VSLVVGA--NKLYSGSMD-----N-----------SIRVWNLETLQCIQTLTEHTSV-----------VMSL 319 (434)
Q Consensus 272 -h-~~~v-~~l~~~~--~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~-----------v~~l 319 (434)
+ ...+ ..+++++ ++++.+... + .|.-.|+++|+....++..... +..+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 0 1111 1234453 355555421 2 6778899999998777642211 1222
Q ss_pred EEcCC---EEEEEeCCCcEEEEEcCCCCce
Q 013881 320 LCWDQ---FLLSCSLDKTIKVWFATDSGNL 346 (434)
Q Consensus 320 ~~~~~---~l~s~s~dg~i~vwd~~~~~~~ 346 (434)
...++ .++.+..+|.+.+.|.++++.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23444 7788999999999999888654
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=4e-06 Score=50.59 Aligned_cols=37 Identities=38% Similarity=0.564 Sum_probs=29.8
Q ss_pred CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
++++.++.+|...|.+++++ +++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36777888888888888887 56888888888888886
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00034 Score=69.06 Aligned_cols=211 Identities=11% Similarity=0.186 Sum_probs=134.2
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc-EEEEEccCCCCEEEEEECCCc-----EEEEECCCCce
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDET-----VRVWDCASGQC 184 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~s~s~dg~-----v~iwd~~~~~~ 184 (434)
.|.|+.-..+.++.|+.+|.|.+.+ .+++.++.++.+... |..+....+..+|++.+.|+. |+||+++.-+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 7888888888999999999887765 555777889988888 555555555578999888764 89999875421
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
-. +..++. ..+++-. .......++.+++.+.+ .+++|-.+|.|..+.-+-....
T Consensus 105 n~------sP~c~~------------~~ri~~~------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 105 NN------SPQCLY------------EHRIFTI------KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred CC------Ccceee------------eeeeecc------CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 10 000000 0000000 01123567788888888 8999999999999853322110
Q ss_pred cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE-EEEEccccccEEEEEEc-CCE-EEEEeCCCcEEE
Q 013881 263 FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCW-DQF-LLSCSLDKTIKV 337 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~-~~~-l~s~s~dg~i~v 337 (434)
-...........+|+.+.+. +..++-+..-..|.+|.+....+ ...+..|.....|.+++ +.. ++++ .+..+.+
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~f 239 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYF 239 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEE
Confidence 01122223346789999884 44423333446789999884442 45577888889999988 333 4433 4568999
Q ss_pred EEcCCCCceEE
Q 013881 338 WFATDSGNLEV 348 (434)
Q Consensus 338 wd~~~~~~~~~ 348 (434)
||....+....
T Consensus 240 Y~sd~~~~cfa 250 (933)
T KOG2114|consen 240 YDSDGRGPCFA 250 (933)
T ss_pred EcCCCcceeee
Confidence 98865544333
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.21 E-value=0.0037 Score=55.50 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=125.6
Q ss_pred EEEEeC--CcEEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEcc-CCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 114 CRNWVQ--GNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 114 c~~~~~--~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
+..|.+ +.++... ..+.|+.|+..++...+..+.+ ...+++. ++ ..|+.+..++ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 345653 4455555 5789999999987333333332 6677777 56 4555556555 5666999986655554
Q ss_pred c--CC-c---eEEE--EeCCCEEEEEcC---------CcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCC
Q 013881 190 L--GG-E---VGCM--ISEGPWIFIGVT---------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG 249 (434)
Q Consensus 190 ~--~~-~---~~~~--~~~~~~l~~~~~---------~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg 249 (434)
. .. . ...+ ..++.+.++... +.|..++.. ++...+.........|+|+++ ++++-+..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 4 11 1 2222 336665555332 347777777 554444445667789999998 455777889
Q ss_pred cEEEEEcCCCCCccc---cceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc
Q 013881 250 AILAWKFNVTTNCFE---PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~---~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (434)
.|..+++........ ....+.......-.++++ ++..++....+.|.++|.+ ++.+..+......+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 999999975433111 122223323346667775 5666666678999999987 88888887776688999995
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.20 E-value=0.00086 Score=60.51 Aligned_cols=255 Identities=16% Similarity=0.180 Sum_probs=141.3
Q ss_pred CcEEEEECCCCceEEEEecCCceE-EEEeCCCEEEEEc-----------CCcEEEEECCCCceE---EecCCCCcEEEEE
Q 013881 172 ETVRVWDCASGQCAGVINLGGEVG-CMISEGPWIFIGV-----------TNFVKAWNTQTNTDL---SLSGPVGQVYAMA 236 (434)
Q Consensus 172 g~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-----------~~~i~~w~~~~~~~~---~~~~~~~~v~~l~ 236 (434)
+.+.|.|..+++.+..+..+-... .+.++++.+++.. ...|.+||.++-... .+... .+...+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-PRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-chheecc
Confidence 369999999999988887664433 3455777776531 237999999997654 22221 0221111
Q ss_pred EeCCEEEEEeCCCcEEEEEcCCCCCc-------cccceeecCccceEEEEEE-CCCEEEEecCCCcEEEEeCC-CCeEEE
Q 013881 237 VGNDLLFAGTQDGAILAWKFNVTTNC-------FEPAASLKGHSLAVVSLVV-GANKLYSGSMDNSIRVWNLE-TLQCIQ 307 (434)
Q Consensus 237 ~~~~~l~~g~~dg~i~vwd~~~~~~~-------~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~-~~~~~~ 307 (434)
.+..+.....+..+.++++...... .+.+..+. ...+..+-+ .++.|.+-+.||.+.-..+. .|+..+
T Consensus 96 -~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 96 -YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred -cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 2223344444555555555433100 02222211 112222333 35678899999999999887 455543
Q ss_pred EEc----cccccEE-EEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC-------C----ccEEEEEeccCCCC
Q 013881 308 TLT----EHTSVVM-SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-------E----HGVLALCGMPDSEG 369 (434)
Q Consensus 308 ~~~----~~~~~v~-~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~ 369 (434)
+.. ....++. .-.+. +..++-.+.+|.|+--|+....... ...... . ..-..+++.+..
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-- 249 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADGWRPGGWQLIAYHAAS-- 249 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTTEEE-SSS-EEEETTT--
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccCcCCcceeeeeecccc--
Confidence 321 1222222 11222 4566668899999999887654221 111100 0 111123333222
Q ss_pred CcEEEEEe--CCC-------eEEEEeCCCCcccccccccCcEEEEEecCCc--EEEE-eCCCCCEEEEEccCCccc
Q 013881 370 KPVLLCSC--NDN-------SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG--LFFT-GDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 370 ~~~l~~~~--~dg-------~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg--~l~s-~~~dg~i~iwd~~~g~~~ 433 (434)
+++.+.-. .++ .|-++|+.+++.+.++..+.++.+|+++.|. +|++ ...++.|.+||..+|+++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 22222211 121 4888899999999999888889999999988 6655 456899999999999875
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.13 E-value=0.0053 Score=54.46 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=99.2
Q ss_pred EEEEEEe-CC-EEEEEeCCCcEEEEEcCCCCCccccceeec--C-ccceEEEEEEC--CCEEEEecCC--------CcEE
Q 013881 232 VYAMAVG-ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK--G-HSLAVVSLVVG--ANKLYSGSMD--------NSIR 296 (434)
Q Consensus 232 v~~l~~~-~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~-h~~~v~~l~~~--~~~l~s~s~d--------g~i~ 296 (434)
...+.+. ++ .|+++...+. .++|+.++.. +.+.... . .......+.++ |++.++.... |.|.
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~--~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKV--TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCE-EEEETTTTEE--EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCEEEEEEcCce-EEEecCCCcE--EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 4555555 44 5555555443 4447666521 2222221 1 33455667775 4444443332 5678
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc--CCEE-EEEeCCCcEEEEEcCCCCc-e---EEEeeecCCc-cEEEEEeccCCC
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDSGN-L---EVTYTHNEEH-GVLALCGMPDSE 368 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~ 368 (434)
.++.. ++..... ..-.....++++ ++.| ++-+..+.|..+++..... + ..+....... ..-.+++..+
T Consensus 119 ~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~-- 194 (246)
T PF08450_consen 119 RIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD-- 194 (246)
T ss_dssp EEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--
T ss_pred EECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--
Confidence 88877 5543333 334556788888 5555 4667788999999875443 2 2222222221 2445555433
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCccccccccc-CcEEEEEe-cCCc--EEEEe
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFAK-QEIRAIQL-GPGG--LFFTG 416 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~-spdg--~l~s~ 416 (434)
+++.++....+.|.+++.. ++.+..+... ..+++++| .++. +++|.
T Consensus 195 -G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 195 -GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred -CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 3366666678999999988 7777766654 68999999 4665 44443
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.0031 Score=60.47 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=110.0
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCE-EEEEEC---CCcEEEEECCCCceEEEEecCCc--eEEEEeCCC
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSK---DETVRVWDCASGQCAGVINLGGE--VGCMISEGP 202 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~ 202 (434)
..|.+=|.+.. .......+ +.+..-.|+||++. ++..+. +..|.++|+.+++........+. ...+.+++.
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 35555555433 32222332 37788999999984 554443 35699999999877665554433 234556777
Q ss_pred EEEEEc----CCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCC--cEEEEEcCCCCCccccceeecCcc
Q 013881 203 WIFIGV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHS 273 (434)
Q Consensus 203 ~l~~~~----~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~ 273 (434)
.++... +..|.++++.++....+..+........|+|+ ++++....+ .|++.|+..+.. +.+ ...+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rl-t~~g~~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQV-VFHGKN 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeC-ccCCCc
Confidence 666532 24788889888877666655544455679988 444444444 577777765532 111 111221
Q ss_pred ceEEEEEECCCEEEEecCC---------CcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe
Q 013881 274 LAVVSLVVGANKLYSGSMD---------NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 274 ~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s 330 (434)
...++.+++.|+..+.. ..|.+.|+.+++. +.+.... ......|+ ++.|+..+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEE
Confidence 23555567766554432 3688889887764 3443321 12233444 55555444
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.09 E-value=0.0012 Score=67.75 Aligned_cols=273 Identities=12% Similarity=0.049 Sum_probs=139.3
Q ss_pred cceEEEEE--eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 110 TDILCRNW--VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 110 ~~i~c~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
+.|..+.| ....++.+...|.|.+-|.++. .+.....-...|.+++||||++.++-.+.++++.+-+- +-..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 47888888 3456888999999999988874 23333334689999999999999999988887765432 2222211
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~ 266 (434)
..... -....+....+-|... .-+-|+. |.....+..... +..
T Consensus 146 ~~L~~--------------------------------d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~e---k~~ 189 (1265)
T KOG1920|consen 146 KPLDA--------------------------------DDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKE---KAL 189 (1265)
T ss_pred ccccc--------------------------------ccccccccceecccccceeeecch-hhhccccccccc---ccc
Confidence 11000 0000111112222221 1111111 111111111100 000
Q ss_pred eeecCccceEEEEEE--CCCEEEE-----ecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe---CCCc
Q 013881 267 ASLKGHSLAVVSLVV--GANKLYS-----GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKT 334 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~--~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~ 334 (434)
... .-...=+++.| +|+++++ ......|++||-+ +.+-..-......-.+++|- |..+++-. .|+.
T Consensus 190 ~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 190 EQI-EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred cch-hhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 000 01112245666 4667666 2333899999976 44332222222333456665 56666643 4667
Q ss_pred EEEEEcCCCCceEEEeeec-CCccEEEEEeccCCCCCcEEEE---EeCCCeEEEEeCCCCcc--cccccccCcEEEEEec
Q 013881 335 IKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLC---SCNDNSVRFYDLPSFAE--RGKIFAKQEIRAIQLG 408 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~s 408 (434)
|.+|.-+....-....... ....+..++|..+++ +|++ ......|++|-+.+..- ...+.-..... +.|+
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd---iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~ 343 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD---ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWD 343 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCC---ceeeeecccccceEEEEEecCeEEEEEEEEecccccc-cccc
Confidence 9998654322211111111 223388899987776 6666 44445599999887432 11111111111 6777
Q ss_pred CCc--EEEEeCCCCCEEEEEc
Q 013881 409 PGG--LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 409 pdg--~l~s~~~dg~i~iwd~ 427 (434)
|.. .|..-..+|...++++
T Consensus 344 p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 344 PVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCCceeEEEEecCCcEEEEEE
Confidence 755 4444446666666554
No 327
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.0077 Score=54.00 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=122.0
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEec-CCCcE
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-MDNSI 295 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i 295 (434)
.+....+.++-|+++++ .|+++.. +|.|..|.++.....+..+........+-+.++.+ +++++++. ..|.|
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 34556778888999988 5666654 47888888876432222222222222233556665 66776665 46899
Q ss_pred EEEeCCC-CeEEE--EEcccccc----------EEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCceEEEe-eecCCccE
Q 013881 296 RVWNLET-LQCIQ--TLTEHTSV----------VMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTY-THNEEHGV 358 (434)
Q Consensus 296 ~vwd~~~-~~~~~--~~~~~~~~----------v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~-~~~~~~~~ 358 (434)
.++-++. |.+.. .+..|.+. +....+. +++|++... --.|.+|++.++....... .......-
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9999865 33321 12234333 4444454 667777764 3579999998554322111 11333456
Q ss_pred EEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCC-c---ccccc-------cccCcEEEEEecCCc-EEEEeC-CCCCEEE
Q 013881 359 LALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSF-A---ERGKI-------FAKQEIRAIQLGPGG-LFFTGD-GTGQVRV 424 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~---~~~~~-------~~~~~v~~~~~spdg-~l~s~~-~dg~i~i 424 (434)
.-+.|+|+.+ +..+.+ -+++|.+|+.... . .+..+ .......+|.+++|| +|.++. ....|-+
T Consensus 194 RHi~FHpn~k---~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 194 RHIVFHPNGK---YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred ceEEEcCCCc---EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 6788887765 665555 4899999998873 1 12211 235568899999999 655553 3346777
Q ss_pred EEccC
Q 013881 425 WQWCN 429 (434)
Q Consensus 425 wd~~~ 429 (434)
|.+..
T Consensus 271 f~V~~ 275 (346)
T COG2706 271 FSVDP 275 (346)
T ss_pred EEEcC
Confidence 77653
No 328
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.05 E-value=0.0088 Score=54.04 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=126.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEE--EeCCCEEEEEcCCcEEEEECCCCceEE-------------
Q 013881 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLS------------- 224 (434)
Q Consensus 160 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~~w~~~~~~~~~------------- 224 (434)
..++.|+.|..+| |.++++........+.....+..+ ..+-..+++-.++.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 4678899999999 999999333322222222225444 345567777778999999986654332
Q ss_pred --ecCCCCcEEEEE-E---eCCEEEEEeCCCcEEEEEcCCCCCcc-ccceeecCccceEEEEEECCCEEEEecCCCcEEE
Q 013881 225 --LSGPVGQVYAMA-V---GNDLLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRV 297 (434)
Q Consensus 225 --~~~~~~~v~~l~-~---~~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 297 (434)
.......+...+ - .....++......|.+|........+ .....+. -...+.++.|.++.++.|..++ ..+
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~ 161 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYL 161 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEE
Confidence 112223444444 1 11133334444489999888753333 3333333 2367888888899888887554 778
Q ss_pred EeCCCCeEEEEEccc------------cccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceE-EEeeecCCccEEEEEec
Q 013881 298 WNLETLQCIQTLTEH------------TSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLE-VTYTHNEEHGVLALCGM 364 (434)
Q Consensus 298 wd~~~~~~~~~~~~~------------~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (434)
.|+.++.....+... ..++..+....+.++.+. |..-.+.|.. +.... ....... ....+.+.
T Consensus 162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~~i~W~~--~p~~~~~~ 237 (275)
T PF00780_consen 162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNKN-GEPSRKSTIQWSS--APQSVAYS 237 (275)
T ss_pred EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcCC-CCcCcccEEEcCC--chhEEEEE
Confidence 899876654443211 123455555533333333 3333333432 32222 1222222 23334332
Q ss_pred cCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 365 PDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 365 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
.+ +|++-+ ++.|.||++.+++.++.+..
T Consensus 238 --~p---yli~~~-~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 238 --SP---YLIAFS-SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred --CC---EEEEEC-CCEEEEEECcCCcEEEEEEC
Confidence 33 666554 46699999999988776653
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.02 E-value=0.0093 Score=55.27 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=131.1
Q ss_pred CeEEEEeCCCCceEEEEecC-ccccEEEEE---ccCC----CCEEEEEEC----------CCcEEEEECCCC-------c
Q 013881 129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGIT---LPSG----SDKLYSGSK----------DETVRVWDCASG-------Q 183 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~-h~~~V~~l~---~s~~----~~~l~s~s~----------dg~v~iwd~~~~-------~ 183 (434)
..|++.|..+. +.+..+.- ..+.|++++ |..+ ..+|+.|.. .|.|.++++.+. +
T Consensus 2 s~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 35788888765 55555432 123444443 4432 567777653 288999999984 3
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc-eE--EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT-DL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~-~~--~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~ 260 (434)
.+......+++.++..-+..++++..+.|.+|++...+ .. ........+.++....+++++|.....+.++.++...
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence 44556677889998876777999999999999998888 44 2233344889999999999999999999998776543
Q ss_pred CccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCC-------C--eEEEEEcc-ccccEEEE---EEcC--
Q 013881 261 NCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLET-------L--QCIQTLTE-HTSVVMSL---LCWD-- 323 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~-------~--~~~~~~~~-~~~~v~~l---~~~~-- 323 (434)
..+..+.. ......++++.+ +++.++.+..+|.|.++.... + +......- ....|+++ ...+
T Consensus 161 ~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 161 NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 22222222 123445666665 556999999999999998752 2 22222222 23456666 2112
Q ss_pred --------CEEEEEeCCCcEEEE
Q 013881 324 --------QFLLSCSLDKTIKVW 338 (434)
Q Consensus 324 --------~~l~s~s~dg~i~vw 338 (434)
..++.++.+|.|.+.
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 137778888888744
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=6.4e-06 Score=80.89 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=127.6
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEe-cCCC-cEEE
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG-SMDN-SIRV 297 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg-~i~v 297 (434)
.+..|....++++|+.+ .|++|+..|.|+++++.++ .......+|..+|+-+.++ |..+++. +... -..+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----cccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 46678889999999987 9999999999999999998 5667788999999999885 5554443 3333 5779
Q ss_pred EeCCC-CeEEEEEccccccEEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceEEEeeecCC--ccEEEEEeccCCCCCcE
Q 013881 298 WNLET-LQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE--HGVLALCGMPDSEGKPV 372 (434)
Q Consensus 298 wd~~~-~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 372 (434)
|++.+ +...+++.+ -.++.|+. +.-+.|+......+||+.+...+..+...... ..-....|+|... +
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---L 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---e
Confidence 99865 455555543 24556662 34455566678999999998777664433221 1123445555543 4
Q ss_pred EEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
++ .|| .+||++..+.+..+..-..-..-.|+|.| .++.-++ |||+.+=+
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHH
Confidence 44 455 57999988777766543333344689999 7776654 78776643
No 331
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.012 Score=56.42 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=108.3
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC--E-EEEEeC---CCcEEEEEcCCCCCccccceeecCccceEE--EEEEC
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSLAVV--SLVVG 282 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~--~l~~~ 282 (434)
.|.+-|.+......+.... .+....|+|+ . ++..+. +..|+++|+.++.. +.+.. ...... .++++
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~---~~g~~~~~~~SPD 243 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIAS---SQGMLVVSDVSKD 243 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEec---CCCcEEeeEECCC
Confidence 4555555555444333333 7778999988 2 554333 35688889877632 22222 222233 34445
Q ss_pred CCEEE-EecC--CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CC--cEEEEEcCCCCceEEEeeecC
Q 013881 283 ANKLY-SGSM--DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 283 ~~~l~-s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~ 354 (434)
++.++ +.+. +..|.++|+.+++. ..+..+........|+ ++.|+..+. .+ .|.+.|+.++...+......
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~- 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK- 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-
Confidence 65544 4433 35688889888764 3454444323334455 666665553 33 57777886655433332211
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCC---------CeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeC-CCC--C
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCND---------NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGD-GTG--Q 421 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~-~dg--~ 421 (434)
. ...++|++. .|+..... ..|.+.|+.++.... +..........|+||| .|+... ..+ .
T Consensus 322 --~--~~~~SPDG~---~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 322 --N--NSSVSTYKN---YIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred --c--CceECCCCC---EEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEE
Confidence 1 135665544 44444332 378888988876433 2222233357899999 554433 333 3
Q ss_pred EEEEEccC
Q 013881 422 VRVWQWCN 429 (434)
Q Consensus 422 i~iwd~~~ 429 (434)
|.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 55555543
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0054 Score=57.96 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=93.3
Q ss_pred ccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEEEEc--c------ccccEEEEEEc-----C-----C
Q 013881 264 EPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLT--E------HTSVVMSLLCW-----D-----Q 324 (434)
Q Consensus 264 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~l~~~-----~-----~ 324 (434)
.+...+....++|++++.+. .+++.|..+|.+.|.|+|....+..-. . ....++++.|. + -
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 33444455678899998864 589999999999999999988876632 2 23457777776 2 2
Q ss_pred EEEEEeCCCcEEEEEcCC--CCceE-EEeee--cCCccEEEEEeccCCC------------------CCcEEEEEeCCCe
Q 013881 325 FLLSCSLDKTIKVWFATD--SGNLE-VTYTH--NEEHGVLALCGMPDSE------------------GKPVLLCSCNDNS 381 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~------------------~~~~l~~~~~dg~ 381 (434)
.|++|+..|.+.+|.+.- ..... .+... .....+..+....... .-+-++....+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 789999999999998752 12111 11111 2223444443221110 0112344445788
Q ss_pred EEEEeCCCCccccccccc-CcEEEEEec-----CCc-EEEEeCCCCCEEEEEccC
Q 013881 382 VRFYDLPSFAERGKIFAK-QEIRAIQLG-----PGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~~-~~v~~~~~s-----pdg-~l~s~~~dg~i~iwd~~~ 429 (434)
++++...+.+...+.... -....+.+- ..+ .|++-..+|.|+++.+..
T Consensus 237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 999999988776665522 122333442 245 888889999999999865
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.01 Score=53.08 Aligned_cols=206 Identities=14% Similarity=0.123 Sum_probs=120.8
Q ss_pred eEEEEeCCCCceEEEEecCccccEE--EEEccCCCCEEEEEEC-----CCcEEEEECC-CCceEEEEecCC---ceEEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVS--GITLPSGSDKLYSGSK-----DETVRVWDCA-SGQCAGVINLGG---EVGCMI 198 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~--~l~~s~~~~~l~s~s~-----dg~v~iwd~~-~~~~~~~~~~~~---~~~~~~ 198 (434)
...+||..++ +..+.+....+.-. --.||+||++|++.-. .|.|-|||.. +.+.+.++...+ .-..+.
T Consensus 29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 4678888887 66655543222211 2569999999998744 4899999999 567777777542 222344
Q ss_pred eCCCEEEEEcC-------------------CcEEEEECCCCceE---Ee--cCCCCcEEEEEEeCC-EEEEEeCC-C---
Q 013881 199 SEGPWIFIGVT-------------------NFVKAWNTQTNTDL---SL--SGPVGQVYAMAVGND-LLFAGTQD-G--- 249 (434)
Q Consensus 199 ~~~~~l~~~~~-------------------~~i~~w~~~~~~~~---~~--~~~~~~v~~l~~~~~-~l~~g~~d-g--- 249 (434)
+++..|+++.. -.+...|..+++.+ .+ ..|...|..+++.++ .++.|... |
T Consensus 108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 56655555321 25666777777765 34 447778899998888 44444322 1
Q ss_pred ----cEEEEEcCCCCCccc-cceeecCccceEEEEEEC--CCEE-EEecCCCcEEEEeCCCCeEEEEEccccccEEEEEE
Q 013881 250 ----AILAWKFNVTTNCFE-PAASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (434)
Q Consensus 250 ----~i~vwd~~~~~~~~~-~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 321 (434)
-|.+++....-..+. +......-...+-+|+++ +..+ +|+=.-+.+.+||..+++.+....- ..+..++.
T Consensus 188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~ 265 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAP 265 (305)
T ss_pred ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeeeee
Confidence 133333222100000 000112233557778885 4455 5555678999999999998876643 33455666
Q ss_pred cCCEEEEEeCCCcEEEE
Q 013881 322 WDQFLLSCSLDKTIKVW 338 (434)
Q Consensus 322 ~~~~l~s~s~dg~i~vw 338 (434)
.++-++..+..|.+...
T Consensus 266 ~~~~f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 266 TDDGFLVSSGQGQLIRL 282 (305)
T ss_pred cCCceEEeCCCccEEEc
Confidence 64334444445554433
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.90 E-value=0.0063 Score=62.78 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=122.9
Q ss_pred ceEEEEe---CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce
Q 013881 193 EVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (434)
Q Consensus 193 ~~~~~~~---~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~ 267 (434)
.+.++.+ ...++++...|.|.+.|.++........-...|.+++|+++ .++..+..+++.+-+..-.....+++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence 4444433 55667777889998889998888777778889999999999 777788888887765432110001110
Q ss_pred eecCccceEEEEEECCC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe-----CCCcEEEEE
Q 013881 268 SLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-----LDKTIKVWF 339 (434)
Q Consensus 268 ~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-----~dg~i~vwd 339 (434)
.-....+....+-|... .-+-|+ .|.....+....+.......-...-+++.|- |+++++.. ..+.|+|||
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred cccccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 00001112222333211 111111 1111111111111100000111222456666 66777732 238999998
Q ss_pred cCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe---CCCeEEEEeCCCCc---ccccccc-cCcEEEEEecCCc-
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFYDLPSFA---ERGKIFA-KQEIRAIQLGPGG- 411 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~---~~~~~~~-~~~v~~~~~spdg- 411 (434)
-+ +.+.... ......-.+++|.|.+. ++++-. +|+.|.+|.-+..+ ....... ..++..++|+.++
T Consensus 229 rE--g~Lns~s-e~~~~l~~~LsWkPsgs---~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 229 RE--GALNSTS-EPVEGLQHSLSWKPSGS---LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred cc--chhhccc-CcccccccceeecCCCC---eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 76 2222211 11222344677777444 555543 56689999865422 1222222 3349999999999
Q ss_pred EEEE---eCCCCCEEEEEccC
Q 013881 412 LFFT---GDGTGQVRVWQWCN 429 (434)
Q Consensus 412 ~l~s---~~~dg~i~iwd~~~ 429 (434)
.|++ ......|++|-+.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 7776 45555599998754
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0023 Score=57.96 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=129.7
Q ss_pred cccccccceEEEEEeCCc---EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEEC
Q 013881 104 NRAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDC 179 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~---~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~ 179 (434)
....+...|..++|++.. +..++.+..|+|.|+++. ..+..+..| ..+.+++|.-|. .+|+.|...|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 445556677788886543 577899999999999997 788888888 899999998754 67888889999999999
Q ss_pred CCCceEE-EEec---CCceEEE--------EeCCCEEEEEcCCcEEEEECCCCc----eEEecCCCCcEEEEEEeCC---
Q 013881 180 ASGQCAG-VINL---GGEVGCM--------ISEGPWIFIGVTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND--- 240 (434)
Q Consensus 180 ~~~~~~~-~~~~---~~~~~~~--------~~~~~~l~~~~~~~i~~w~~~~~~----~~~~~~~~~~v~~l~~~~~--- 240 (434)
+..+-.. .+.. -.++..+ +..+.++ ++..-.+..|++.... .+...+..+...++.+.+.
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglL-v~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLL-VFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceE-EeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 8653211 1111 1122222 1223333 3333344455543322 2223344556666666552
Q ss_pred EEEEEeCC------CcEEE-EEcCCCCCccccceee------cCccceEEEEEECCCE-EEEecCCCcEEEEeCCCCeEE
Q 013881 241 LLFAGTQD------GAILA-WKFNVTTNCFEPAASL------KGHSLAVVSLVVGANK-LYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 241 ~l~~g~~d------g~i~v-wd~~~~~~~~~~~~~~------~~h~~~v~~l~~~~~~-l~s~s~dg~i~vwd~~~~~~~ 306 (434)
.|++.-.+ ..|.. -|...+.......... +-++....--..+.++ +..+...+.+.+||..+.+.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 33333221 01111 0111110000000000 0011111100112244 445667789999999999999
Q ss_pred EEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEc
Q 013881 307 QTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 307 ~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~ 340 (434)
+++... .+|..+.+. +.+|++-+ |..++||..
T Consensus 425 Q~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 425 QTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred eecccC-cceeecceeecCCcchhhhee-cceEEEEec
Confidence 998654 788888776 34555544 567787754
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.86 E-value=0.037 Score=54.80 Aligned_cols=183 Identities=16% Similarity=0.208 Sum_probs=110.4
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEE----------EEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSG----------ITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~----------l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.++.+++++.++.|+-.|..+| +.+-++.... ..+.. +++ .+..++.++.|+.|.-.|.++|+.+-
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4667888888899999999999 6666654211 11111 112 23567788899999999999999987
Q ss_pred EEecCCc-----eE--EEEeCCCEEEEEc-------CCcEEEEECCCCceE-Eec---CC--------------------
Q 013881 187 VINLGGE-----VG--CMISEGPWIFIGV-------TNFVKAWNTQTNTDL-SLS---GP-------------------- 228 (434)
Q Consensus 187 ~~~~~~~-----~~--~~~~~~~~l~~~~-------~~~i~~w~~~~~~~~-~~~---~~-------------------- 228 (434)
....... +. -+..++ .++++. ++.|..+|.++++.+ ... ..
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 7654321 11 112244 444432 578999999999876 211 11
Q ss_pred --------CCcEE-EEEEeCC--EEEEEeCC-----C-----------cEEEEEcCCCCCccccceeecCc--------c
Q 013881 229 --------VGQVY-AMAVGND--LLFAGTQD-----G-----------AILAWKFNVTTNCFEPAASLKGH--------S 273 (434)
Q Consensus 229 --------~~~v~-~l~~~~~--~l~~g~~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~h--------~ 273 (434)
...+. .+++.++ +++.+..+ + +|.-.|+++++..+.. ....| .
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~--Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY--QTTPHDEWDYDGVN 301 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee--eCCCCCCccccCCC
Confidence 00111 2355554 56655522 2 5677777777432211 11112 1
Q ss_pred c-eEEEEEECCC---EEEEecCCCcEEEEeCCCCeEE
Q 013881 274 L-AVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 274 ~-~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
. .+..+..+++ .++.+..+|.+++.|-++++.+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1 1233334555 6789999999999999999886
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0011 Score=65.60 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=124.9
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccce-EEEEEECC--CEEEEecCCC-----cEEEEeCCC
Q 013881 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA-VVSLVVGA--NKLYSGSMDN-----SIRVWNLET 302 (434)
Q Consensus 231 ~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~l~s~s~dg-----~i~vwd~~~ 302 (434)
.+.++.-+...++.|+.+|.|.+++-.. +.+..++.+... |..+.... ++|++.+.|+ .|++||++.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~-----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF-----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc-----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 5666555555999999999999886443 445667777666 44444433 4788777765 499999864
Q ss_pred ------CeEE--EEEcc-----ccccEEEEEEc--CCEEEEEeCCCcEEEEE--cCCCCceEEEeeecCCccEEEEEecc
Q 013881 303 ------LQCI--QTLTE-----HTSVVMSLLCW--DQFLLSCSLDKTIKVWF--ATDSGNLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 303 ------~~~~--~~~~~-----~~~~v~~l~~~--~~~l~s~s~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
.+++ ..+.. ...++.+++.+ -+.+++|-.+|.|..+. +...+..+....+....+++.+.+..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2334 12222 24566777777 46889999999999983 33333345666777778899999886
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCccccc-cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERGK-IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
++... +.++ ....|.+|.+....+... +. +...+.|..+++.. .+++++.. .|.+|+...
T Consensus 182 d~~s~--lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 182 DGKSV--LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CCcee--EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 65532 3333 346799999985442222 22 35678888888766 46666543 488887654
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=7.5e-05 Score=44.00 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=35.0
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
+++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56778888999999999999999999999999999996
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.002 Score=47.99 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=62.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEE
Q 013881 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIR 403 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 403 (434)
+.|++|+.|..|++|+-. .+ +........+..++..... .++.+..+|+|-+|+-. ..+.++..+..+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~---e~--~~Ei~e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---EI--VAEITETDKVTSLCSLGGG----RFAYALANGTVGVYDRS--QRLWRIKSKNQVT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCC---cE--EEEEecccceEEEEEcCCC----EEEEEecCCEEEEEeCc--ceeeeeccCCCeE
Confidence 689999999999999632 22 2222333457777765442 58999999999999763 3445555566677
Q ss_pred EEEec---CCc--EEEEeCCCCCEEE
Q 013881 404 AIQLG---PGG--LFFTGDGTGQVRV 424 (434)
Q Consensus 404 ~~~~s---pdg--~l~s~~~dg~i~i 424 (434)
++++. -|| .|++|-.+|.|-+
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEEe
Confidence 66553 456 8999999998753
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.73 E-value=0.028 Score=50.39 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=107.0
Q ss_pred EEEEEEeCC---EEEEEeCCCc-EEEEEcCCCCCccccceeecCccc----eEEEEEECCCEEEEecC-----CCcEEEE
Q 013881 232 VYAMAVGND---LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKGHSL----AVVSLVVGANKLYSGSM-----DNSIRVW 298 (434)
Q Consensus 232 v~~l~~~~~---~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~l~s~s~-----dg~i~vw 298 (434)
...++.+|. .++.+-.-|. ..+||..++. ....+..... .=-.++.+|++|++.-. .|.|-||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~----~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ----LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc----eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 345555553 5555555544 6678887763 2222222111 11234556888887644 5899999
Q ss_pred eCC-CCeEEEEEccccccEEEEEEc--CCEEEEEe------------------CCCcEEEEEcCCCCceEEEee--ecCC
Q 013881 299 NLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLSCS------------------LDKTIKVWFATDSGNLEVTYT--HNEE 355 (434)
Q Consensus 299 d~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s------------------~dg~i~vwd~~~~~~~~~~~~--~~~~ 355 (434)
|.. +.+.+.++..|.-.-..+.+. ++.|+++- .+-.+.+.|..+++.+..... ..+.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 999 778888887665444444444 44555542 334455566666665555333 2222
Q ss_pred ccEEEEEeccCCCCCcEEEEEeC-CC-------eEEEEeCCCCccccc------ccccCcEEEEEecCCc-EE-EEeCCC
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCN-DN-------SVRFYDLPSFAERGK------IFAKQEIRAIQLGPGG-LF-FTGDGT 419 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~------~~~~~~v~~~~~spdg-~l-~s~~~d 419 (434)
..+.-+++..++. ++.+.. .| -|.+++....-.... ....+.+-+|++++++ .+ +|+=.-
T Consensus 163 lSiRHLa~~~~G~----V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 163 LSIRHLAVDGDGT----VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cceeeEEecCCCc----EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 3444454443322 333321 11 123333222100011 1125779999999999 55 555578
Q ss_pred CCEEEEEccCCccc
Q 013881 420 GQVRVWQWCNGPVA 433 (434)
Q Consensus 420 g~i~iwd~~~g~~~ 433 (434)
+.+.+||..+|+++
T Consensus 239 g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 239 GRVAVWDAATGRLL 252 (305)
T ss_pred CEEEEEECCCCCEe
Confidence 89999999999875
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0007 Score=66.81 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred eEEEEEeCCcEEE--ecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 112 ILCRNWVQGNCMY--GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 112 i~c~~~~~~~~~~--g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
++.++|.+...+. |-.-|.+.+|...+. +.......|..+|..+.||++|..|+|+..-|.|.+|.+.-
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4559998887555 447789999999886 66666678999999999999999999999999999998763
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0009 Score=67.66 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=92.6
Q ss_pred EEecCCCcEEEEeCCCCeEEEEEcccccc-EEEEEEc-------CCEEEEEeCCCcEEEEEcCCCCc-eEEEee--ecCC
Q 013881 287 YSGSMDNSIRVWNLETLQCIQTLTEHTSV-VMSLLCW-------DQFLLSCSLDKTIKVWFATDSGN-LEVTYT--HNEE 355 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~--~~~~ 355 (434)
........|+-.|++.|+.+..+..|... |..++.. +...+.|-.+..+..||.+-.+. +..... ....
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 33445688999999999999999988755 7777764 34667788899999999987542 211111 1122
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
....+++-. .++ +||+|+.+|.||+||--...-...+.. ..+|..|..+.|| +|++.+ +..|.|++..
T Consensus 578 ~~Fs~~aTt---~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATT---EDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCceEEEec---CCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 234444432 222 799999999999999543222223333 7899999999999 444333 4567777753
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.69 E-value=0.027 Score=55.36 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=66.5
Q ss_pred CCEEEEEeCCCcEEEEEcCC-----CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-----
Q 013881 323 DQFLLSCSLDKTIKVWFATD-----SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE----- 392 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----- 392 (434)
+++... .++.|.+.|..+ ...+..+... .....+.++|++. .+++++..+.+|.|+|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 455444 367899999887 2223223222 3355666666544 4555666799999999988664
Q ss_pred -------cccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 393 -------RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 393 -------~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..+......-...+|.++| .+.|---|..|-.|++.+
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2222223334567899999 888888999999999876
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.008 Score=44.85 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=64.2
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEE
Q 013881 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 362 (434)
+.|++|+.|..||+|+-. +.+.++... +.|+++... +..++.+..+|+|-+|+-. ..+... .....+.++.
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRi---KSK~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRI---KSKNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeee---ccCCCeEEEE
Confidence 479999999999999854 567777554 455666555 7899999999999999752 222222 2333355554
Q ss_pred ec-cCCCCCcEEEEEeCCCeEEE
Q 013881 363 GM-PDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 363 ~~-~~~~~~~~l~~~~~dg~i~i 384 (434)
+. .+.++.+-|++|-.+|.|-+
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEEe
Confidence 44 34455567999999998753
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.58 E-value=0.0014 Score=62.44 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.....|.+++++|+.+.|+.|+.||+|.+||...+.... ..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------------------------------------~k 297 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------------------------------------AK 297 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------------------------------------ee
Confidence 477899999999999999999999999999987663221 12
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
..-..+.++|+|+ ++++|+..|.+.+||+.-..
T Consensus 298 a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 298 AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 2334678999998 99999999999999987653
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.57 E-value=2.3e-05 Score=74.53 Aligned_cols=192 Identities=15% Similarity=0.230 Sum_probs=118.3
Q ss_pred ceEEEEEeC--Cc--EEEecCCCeEEEEeCCCCceE-EEEecCccccEEEEEccC-CCCEEEEEE----CCCcEEEEECC
Q 013881 111 DILCRNWVQ--GN--CMYGEKCKFLHSWTVGDGFKL-LTQLEGHQKVVSGITLPS-GSDKLYSGS----KDETVRVWDCA 180 (434)
Q Consensus 111 ~i~c~~~~~--~~--~~~g~~d~~i~vwd~~~~~~~-~~~l~~h~~~V~~l~~s~-~~~~l~s~s----~dg~v~iwd~~ 180 (434)
.+.|+++.- +. +..|..+|.|-+-.+.....- .....+|....++++|++ |.+.||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 577887732 22 445778899998877643222 344567889999999987 667777773 35678999988
Q ss_pred CCce--EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 181 SGQC--AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 181 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
++-. ..... +.+ +......+++|..+ ++++|.....+.++|+
T Consensus 138 s~ltvPke~~~---------------------------fs~-------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 138 SLLTVPKESPL---------------------------FSS-------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccCCCccccc---------------------------ccc-------ccccCccccccccCcchhhcccccchhhhhhh
Confidence 7621 11100 000 11223336777655 8888889999999999
Q ss_pred CCCCCccccceeecCccceEEEEEE---CCCEEEEecCCCcEEEEe-CCCC-eEEEEEcccc----ccEEEEEEc---CC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWN-LETL-QCIQTLTEHT----SVVMSLLCW---DQ 324 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd-~~~~-~~~~~~~~~~----~~v~~l~~~---~~ 324 (434)
+.... ....+ .+..+..+.+ .++++++-. ||.|.+|| .+.- .+++.+...+ ..+..++|. ..
T Consensus 184 Rqs~~---~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 184 RQSLD---SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhh---hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 85421 11111 1223333333 567887766 99999999 3332 2233222222 237888887 34
Q ss_pred EEEEEeC-CCcEEEEEcCC
Q 013881 325 FLLSCSL-DKTIKVWFATD 342 (434)
Q Consensus 325 ~l~s~s~-dg~i~vwd~~~ 342 (434)
.+++.+. .++|+++|+..
T Consensus 258 lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhhccCcceEEEecccc
Confidence 6666665 47899998863
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.49 E-value=0.052 Score=52.17 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=106.8
Q ss_pred ecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEE-ECCCCceEE
Q 013881 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAW-NTQTNTDLS 224 (434)
Q Consensus 146 l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w-~~~~~~~~~ 224 (434)
+....-....|.++|++++++. ..||.-.|+.....+.... ....-..+...+.+.+....+.|.++ +.+......
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--CceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 3334456788999999999988 5567778887444333221 11222222335666666667788886 332222111
Q ss_pred ecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC
Q 013881 225 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 302 (434)
+.. ...+..+-. +.+|+..+.+ .|.+||+.+. +.+..+... +|..+.|+ +++++..+. ..+.+++...
T Consensus 105 i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~~ 174 (443)
T PF04053_consen 105 IKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETG----KLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYNL 174 (443)
T ss_dssp ----SS-EEEEE--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHc----ceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEecc
Confidence 211 122333333 4455554444 8999999987 566666533 48888997 457777664 4677776443
Q ss_pred C-----------eEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 303 L-----------QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 303 ~-----------~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
. ..+..+..-...|.+..|.++.++-.+.. .|+.+ . ++....+...... ..-+.+.+.. .
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~-~Ge~~~i~~ld~~--~yllgy~~~~---~ 245 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--V-NGETGIIAHLDKP--LYLLGYLPKE---N 245 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--E-TTEEEEEEE-SS----EEEEEETTT---T
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--E-cCCcceEEEcCCc--eEEEEEEccC---C
Confidence 2 13334433367788888887766666555 66663 2 2333333333333 3333333322 2
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 013881 372 VLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~ 389 (434)
.+.....|+.|..+.++.
T Consensus 246 ~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-TT--EEEEE--H
T ss_pred EEEEEECCCCEEEEEECH
Confidence 677777888888887754
No 348
>PHA02713 hypothetical protein; Provisional
Probab=97.48 E-value=0.015 Score=57.99 Aligned_cols=213 Identities=7% Similarity=-0.016 Sum_probs=106.7
Q ss_pred cEEEEECCCCceEEecCCCCc--EEEEEEeCC-EEEEEeCC------CcEEEEEcCCCCCccccceeecCccceEEEEEE
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQ--VYAMAVGND-LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~--v~~l~~~~~-~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 281 (434)
.+..||..+++...+..-... -.+++...+ +.++|+.+ ..+..||..+.. +.....+............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeEEEE
Confidence 355677766654433221111 123333344 66666643 346778876542 2333333322233344555
Q ss_pred CCCEEEEecCCC-----cEEEEeCCCCeEE--EEEccccccEEEEEEcCCEEEEEeCCC---------------------
Q 013881 282 GANKLYSGSMDN-----SIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLDK--------------------- 333 (434)
Q Consensus 282 ~~~~l~s~s~dg-----~i~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~dg--------------------- 333 (434)
++...+.|+.++ .+..||..+.+-. ..+.........+...+...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 677777777654 4888998875432 222222222233445567777776553
Q ss_pred --cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC------CeEEEEeCCC---CcccccccccCcE
Q 013881 334 --TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND------NSVRFYDLPS---FAERGKIFAKQEI 402 (434)
Q Consensus 334 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~~~~v 402 (434)
.+..||..+..-.. .........-.+++.. ++++.+.|+.+ ..+..||..+ .+.+..+......
T Consensus 431 ~~~ve~YDP~td~W~~-v~~m~~~r~~~~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 431 SNKVIRYDTVNNIWET-LPNFWTGTIRPGVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cceEEEECCCCCeEee-cCCCCcccccCcEEEE----CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 46677766543211 1111110001111111 22366666654 2467899876 3334444332222
Q ss_pred EEEEecCCc-EEEEeCCCC--CEEEEEccCCc
Q 013881 403 RAIQLGPGG-LFFTGDGTG--QVRVWQWCNGP 431 (434)
Q Consensus 403 ~~~~~spdg-~l~s~~~dg--~i~iwd~~~g~ 431 (434)
..++.. ++ ..++|+.|| .+..||..+.+
T Consensus 506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE-CCEEEEEeeecceeehhhcCccccc
Confidence 233333 56 888898888 78888887764
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00058 Score=66.07 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=77.0
Q ss_pred EEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 316 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
.++++..+++++.|+.-|.+++|+-..+......... ....+...+.+++. .++|.|+..|.|.++-+....+...
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e---~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVE---YLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchh---HhhhhhcCCceEEeehhhccCCCcc
Confidence 3566666888999998999999876554433322222 22233344444333 4889999999999998876433222
Q ss_pred c-------cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 396 I-------FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 396 ~-------~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
. .|+..|++++|++++ .|++|...|.|..-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 146789999999999 999999999999888765
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.41 E-value=7.3e-05 Score=71.27 Aligned_cols=193 Identities=16% Similarity=0.214 Sum_probs=121.0
Q ss_pred CCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEec----CCCcEEE
Q 013881 229 VGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGS----MDNSIRV 297 (434)
Q Consensus 229 ~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s----~dg~i~v 297 (434)
...+.|+++.-+ ++++|..+|.|.+-.++.... .-.....++...+++++|++ +.|++|- .|..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd--Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD--SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc--ccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 344555655433 899999999999998876532 22344567788899999974 4666653 3678999
Q ss_pred EeCCCC--eEEE--EEcc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 298 WNLETL--QCIQ--TLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 298 wd~~~~--~~~~--~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
||+.++ .+.. .|.. -.....+++|. .+++++|.....+.++|++........... ..+..+...|...+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~vqG~tVdp~~~n- 209 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KYVQGITVDPFSPN- 209 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hhcccceecCCCCC-
Confidence 999876 2211 1211 22333456665 567888888889999999843221111111 12334555554432
Q ss_pred cEEEEEeCCCeEEEEeC-CCCc-ccccccc-----cCcEEEEEecCCc--EEEEeCC-CCCEEEEEccC
Q 013881 371 PVLLCSCNDNSVRFYDL-PSFA-ERGKIFA-----KQEIRAIQLGPGG--LFFTGDG-TGQVRVWQWCN 429 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~-~~~~-~~~~~~~-----~~~v~~~~~spdg--~l~s~~~-dg~i~iwd~~~ 429 (434)
++++- .||.|.+||. ...+ ++..+.+ ...+..++|+|.. ++++... .++|+++++..
T Consensus 210 -Y~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 -YFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -ceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 55544 5999999994 3322 2333333 2349999999976 7777664 57899998764
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00034 Score=58.64 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=84.4
Q ss_pred EEEEecCCCcEEEEeCCCCeEE-EEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 285 KLYSGSMDNSIRVWNLETLQCI-QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
.+..-+.||.|+-++++..+.- +.-..+... ..+.-.+..+++|+.+|.|.+|.................. ..+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~---i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES---IDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhccccc---ceec
Confidence 3556678899988887753321 111112222 3333337789999999999999876433322222221111 1223
Q ss_pred ccCCCCCcEEEEEeCCCeEEEEeCCCCccccccccc--CcEEEEEecCCc-EEEEe--CCCCCEEEEEccC
Q 013881 364 MPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAK--QEIRAIQLGPGG-LFFTG--DGTGQVRVWQWCN 429 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~spdg-~l~s~--~~dg~i~iwd~~~ 429 (434)
.|......+..+++.||.|+.|++...+.+....++ .++..+..+..+ .++.+ |.|..++.|++..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344555558999999999999999988777665542 334333333333 66666 6777777777653
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.29 E-value=0.13 Score=49.60 Aligned_cols=213 Identities=13% Similarity=0.041 Sum_probs=106.3
Q ss_pred eEEEEEeC-CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 112 ILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 112 i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
...+.+.+ +..++...+|.-.|+..... +... .+.-...+|.+. ..+|+-....+|.|+.--+.+....+..
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAW-RNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTT-EEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCC-cccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcC
Confidence 34455543 45666677888888874443 3322 233445778874 4577777788999974434444456666
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC------CCc
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------TNC 262 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~------~~~ 262 (434)
+..+..+.. |.+|....++.|.+||+++++.+...... .|..+.|+++ +++..+.+ .+.+++.+.. ...
T Consensus 108 ~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 108 PFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred CcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence 655666655 88888888889999999999887554444 3899999988 66666544 6777765532 000
Q ss_pred cc-cceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCe--EEEEEccccccEEEEEEcC--CEEEEEeCCCcEEE
Q 013881 263 FE-PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKV 337 (434)
Q Consensus 263 ~~-~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~v 337 (434)
.+ ....+..-...|.+..|.++.++-.+.. .|+. +..|+ .+..+ ..++.-+.+.+ +.+.....|+.|..
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGETGIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEEEEEEE----SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred chhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCcceEEEc---CCceEEEEEEccCCEEEEEECCCCEEE
Confidence 01 2222222255677777777744433333 5554 22222 22222 23344444444 66666777777766
Q ss_pred EEc
Q 013881 338 WFA 340 (434)
Q Consensus 338 wd~ 340 (434)
+.+
T Consensus 259 ~~l 261 (443)
T PF04053_consen 259 YEL 261 (443)
T ss_dssp EE-
T ss_pred EEE
Confidence 654
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.24 Score=47.49 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=95.7
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCcccc---ceeecCccceEEEEEECCCEE
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEP---AASLKGHSLAVVSLVVGANKL 286 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~~~h~~~v~~l~~~~~~l 286 (434)
.|.+|+........+.-..+.|.++.|..+ .|++-..||.+++||+.... .+.. .....-....+....+.++-+
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCE
Confidence 366777666655443333389999999887 88888999999999986432 1111 111111112222223332323
Q ss_pred EEecCCCcEEEEeCCCCe-EEEEEc---c-------ccc--cEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeec
Q 013881 287 YSGSMDNSIRVWNLETLQ-CIQTLT---E-------HTS--VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~~~-~~~~~~---~-------~~~--~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
+.-..++.+.+.+--... ..+.+. . +.. .+..+.......+....++.+.+.+-..... ..
T Consensus 141 vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~ 214 (410)
T PF04841_consen 141 VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ID 214 (410)
T ss_pred EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------cc
Confidence 333445555444322211 111111 1 000 0111111133344444445555443222111 11
Q ss_pred CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecCCc
Q 013881 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGPGG 411 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg 411 (434)
....+..++.+|+.. ++|.-..+|.+.+....-.+....+.. ......|.|.-+.
T Consensus 215 ~~~~i~~iavSpng~---~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGK---FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCCeEEEEECCCCC---EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 224578888877665 888888889998887655444444332 2445555555543
No 354
>PHA02713 hypothetical protein; Provisional
Probab=97.14 E-value=0.05 Score=54.41 Aligned_cols=212 Identities=7% Similarity=0.085 Sum_probs=111.7
Q ss_pred CeEEEEeCCCC-ceEEEEecCccccEEEEEccCCCCEEEEEECC------CcEEEEECCCCceEEEEecCC---ceEEEE
Q 013881 129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMI 198 (434)
Q Consensus 129 ~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~ 198 (434)
..+..||..++ ...+..+...... .+++. -++...+.||.+ ..+..||..+.+-...-.... ......
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 35677888765 1222222211111 12222 266777777754 347788887765322222211 122333
Q ss_pred eCCCEEEEEc-C-----CcEEEEECCCCceEEecC---CCCcEEEEEEeCCEEEEEeCCC--------------------
Q 013881 199 SEGPWIFIGV-T-----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQDG-------------------- 249 (434)
Q Consensus 199 ~~~~~l~~~~-~-----~~i~~w~~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~dg-------------------- 249 (434)
.++.+.+.|. + ..+..||..+++...+.. .......+.....+.+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4555544443 3 258889998876553322 1222223334444666676542
Q ss_pred ---cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC------CcEEEEeCCC-C--eEEEEEccccccEE
Q 013881 250 ---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLET-L--QCIQTLTEHTSVVM 317 (434)
Q Consensus 250 ---~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~-~--~~~~~~~~~~~~v~ 317 (434)
.+..||..+.. +..+..+............++...+.|+.+ ..+..||..+ . +.+..+........
T Consensus 430 ~~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCe--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 46677776542 233333322222223345566666667654 2467899886 3 34444544445555
Q ss_pred EEEEcCCEEEEEeCCC--cEEEEEcCCCC
Q 013881 318 SLLCWDQFLLSCSLDK--TIKVWFATDSG 344 (434)
Q Consensus 318 ~l~~~~~~l~s~s~dg--~i~vwd~~~~~ 344 (434)
.+...+...++|+.++ .+..||..+.+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCccccc
Confidence 6666688888999888 66677766553
No 355
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.2 Score=44.14 Aligned_cols=268 Identities=9% Similarity=0.114 Sum_probs=164.0
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCc---eEEEEecCCceEEEEeCCCEEEEEc-CCcEEEEECCCCceE--
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---CAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-- 223 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~~w~~~~~~~~-- 223 (434)
.+-+..+.++ +++...+..+.-++|.|+.+.. .+..+...+-..++.-.++++.+.. +.-+.+.|+......
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 4556666775 4567777777779999998764 3344444455566677888888876 777888888776543
Q ss_pred --EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecC-ccceEEEEEECCCEEEEecCCCcEEEEeC
Q 013881 224 --SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVGANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 224 --~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 300 (434)
........-..++.+.++.+.+..|+-+.+.|+..... +...-.- ....+.++..++++.+..-.+--+.+-|.
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~ 240 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDV 240 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCC---CeEEEEEecCCceEEEEecCCeeEEEEcccceEEEec
Confidence 33344555578899999999999999999999987642 2221111 12267888888888777767777888888
Q ss_pred CCCeEEEEEcc--c--cccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc-cEEEEEeccCCCCCcEEEE
Q 013881 301 ETLQCIQTLTE--H--TSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 301 ~~~~~~~~~~~--~--~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 375 (434)
...+....+.. . ...++.+...+++......+.-+.+-|+.+.............. ....+... .. ++..
T Consensus 241 s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~---y~yi 315 (370)
T COG5276 241 SGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN---YNYI 315 (370)
T ss_pred CCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC---eeEe
Confidence 77665444432 1 22234456778888888888888888887665433222111111 11111111 11 3333
Q ss_pred EeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 376 SCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 376 ~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+..+ ...+-+....+....... ...+.+.+.+-+. .+.+...++.+.||+..
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 3322 444445544333333332 2223333344344 77788889999999864
No 356
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.01 E-value=0.057 Score=53.95 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=104.4
Q ss_pred EEEEEEeCC-EEEEEeCC------CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCc-----EEEEe
Q 013881 232 VYAMAVGND-LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS-----IRVWN 299 (434)
Q Consensus 232 v~~l~~~~~-~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~vwd 299 (434)
-.+++..++ +.++|+.| .++..||..... +.....+.......-.....+...++|+.||. |-.||
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence 344555555 77788888 346677776653 44555555555555555667888889998864 77788
Q ss_pred CCCCeE--EEEEccccccEEEEEEcCCEEEEEeCCC------cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 300 LETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDK------TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 300 ~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
..+.+- +..+...........+.+...++|+.++ ++..||..+..-...-..... .....++.. ++.
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~a~~----~~~ 477 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGVAVL----NGK 477 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccceEEEE----CCE
Confidence 776442 2222222333344455577778887554 467777766542221111111 111112211 334
Q ss_pred EEEEEeCCC-----eEEEEeCCCCccccc--ccccCcEEEEEecCCc-EEEEeCCCC-----CEEEEEccCC
Q 013881 372 VLLCSCNDN-----SVRFYDLPSFAERGK--IFAKQEIRAIQLGPGG-LFFTGDGTG-----QVRVWQWCNG 430 (434)
Q Consensus 372 ~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~v~~~~~spdg-~l~s~~~dg-----~i~iwd~~~g 430 (434)
+.+.|+.|+ +|..||..+.+-... +.....-..++.. ++ ..++|+.|| +|..||-.+.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE-CCEEEEEecccCccccceeEEcCCCCC
Confidence 778888776 377788876443322 2222222222222 34 778888776 4666665544
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0067 Score=58.31 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=64.6
Q ss_pred ceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEE-EEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 111 ~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
.|.-+.|.+. -++++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|++++..+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 5667788664 57778899999998887 378888887888887 999999999999999999999999999988766
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.89 E-value=0.0039 Score=38.84 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.2
Q ss_pred cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 397 FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 397 ~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.....|..++|+|.. +||.+..+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 345679999999999 9999999999999999 5543
No 359
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.28 Score=43.35 Aligned_cols=190 Identities=13% Similarity=0.153 Sum_probs=116.2
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEE-ecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~-l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
...|.-|..+.....+.-+..-+|..+-....... +.|-...|.++.|+|+.+.|++......-.||=..+|+.++++.
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP 124 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP 124 (316)
T ss_pred eeeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec
Confidence 34555555555555555555677776643233333 45556669999999999999999999988999888999999988
Q ss_pred cCC----ceEEEEeCCCEEEEEc-CCcEEEEECCCCceE--------Eec--CC-CCcEEEEEEeCC--EEEEEeCCCcE
Q 013881 190 LGG----EVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL--------SLS--GP-VGQVYAMAVGND--LLFAGTQDGAI 251 (434)
Q Consensus 190 ~~~----~~~~~~~~~~~l~~~~-~~~i~~w~~~~~~~~--------~~~--~~-~~~v~~l~~~~~--~l~~g~~dg~i 251 (434)
... +......++.++++.. ++.+.++.+...... .+. .+ ......++|++. .|+.+-+-.-+
T Consensus 125 L~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~ 204 (316)
T COG3204 125 LTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPI 204 (316)
T ss_pred ccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCc
Confidence 653 2223334555555543 557777666554321 111 12 566788999887 77777887788
Q ss_pred EEEEcCCCCCccccceeecCc-------cceEEEEEEC---CCEEEEecCCCcEEEEeCC
Q 013881 252 LAWKFNVTTNCFEPAASLKGH-------SLAVVSLVVG---ANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h-------~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~ 301 (434)
.||.+........ ......+ -..|.++.++ +.+++-+.+++.+.-.|..
T Consensus 205 ~I~~~~~~~~~l~-~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 205 GIFEVTQSPSSLS-VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EEEEEecCCcccc-cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 8887764432111 1111111 1234455554 3356666666666666643
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.079 Score=54.49 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=62.4
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
.+...+....-++.|+..|.+-..|......+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 44445555556788888888988887764343333333468999999999999999999999999999999988877654
Q ss_pred C
Q 013881 191 G 191 (434)
Q Consensus 191 ~ 191 (434)
.
T Consensus 171 ~ 171 (1206)
T KOG2079|consen 171 H 171 (1206)
T ss_pred c
Confidence 3
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0028 Score=53.34 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=67.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeEEEEEcccc-c
Q 013881 239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-S 314 (434)
Q Consensus 239 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~ 314 (434)
...+++|+.+|.|.+|....... .......-...|.++-+. +.+..+++.||.|+.|++.-.+.+-....|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA---HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccch---HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 34889999999999998874321 111122222334444443 3478899999999999999988887777777 4
Q ss_pred cEEEEEEc--CCEEEEE--eCCCcEEEEEcCC
Q 013881 315 VVMSLLCW--DQFLLSC--SLDKTIKVWFATD 342 (434)
Q Consensus 315 ~v~~l~~~--~~~l~s~--s~dg~i~vwd~~~ 342 (434)
++..+... +.++..+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44443333 5566666 6777777777654
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.85 E-value=0.42 Score=44.89 Aligned_cols=256 Identities=14% Similarity=0.082 Sum_probs=128.3
Q ss_pred cCCCCEEEEE---------ECCCcEEEEECCCCceEEEEec--CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 159 PSGSDKLYSG---------SKDETVRVWDCASGQCAGVINL--GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 159 s~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
|||+++++.. +..+.+.|+|+++++....... .......++++..++...++.|.+.+..++....+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 5777776663 2246789999999765544333 3344556678999999999999999988776553322
Q ss_pred C------------------CCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CC
Q 013881 228 P------------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN 284 (434)
Q Consensus 228 ~------------------~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~ 284 (434)
. -+.-..+-|+|+ +++.--.+..|..+.+........ .-..+..+.+- |.
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGD 153 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccCCCCC
Confidence 1 112345778887 334444445555544322110000 00123333331 22
Q ss_pred EEEEecCCCcEEEEeCCCCeEEE--EE---ccccccEEEEEEc--CCEEEEEe--CC---CcEEEEEcCCCCceEEEeee
Q 013881 285 KLYSGSMDNSIRVWNLETLQCIQ--TL---TEHTSVVMSLLCW--DQFLLSCS--LD---KTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~~~--~~---~~~~~~v~~l~~~--~~~l~s~s--~d---g~i~vwd~~~~~~~~~~~~~ 352 (434)
... .-.+.|+|+.+++... .. ......+..+.|. ++.|+..- .+ ..+.++|..++.........
T Consensus 154 ~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 154 PNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp -------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred cCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 111 1146678888776532 11 1234556778876 33244333 22 23666777665543333222
Q ss_pred cCCccE---EEEEeccCCCCCcEEEEEeCCCe--EEEEeCCCCcccccccccCcEEE-EEecCCc--EEEEeCCC--CCE
Q 013881 353 NEEHGV---LALCGMPDSEGKPVLLCSCNDNS--VRFYDLPSFAERGKIFAKQEIRA-IQLGPGG--LFFTGDGT--GQV 422 (434)
Q Consensus 353 ~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~-~~~spdg--~l~s~~~d--g~i 422 (434)
....+ ....+. ..++..+|.....||. |.+++...+.......+.-.|+. +.+++++ .++++..+ +.-
T Consensus 230 -~~~Wv~~~~~~~~~-~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 230 -SDGWVDVYDPPHFL-GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp -SSSSSSSSSEEEE--TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred -CCcceeeecccccc-cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 22221 122222 1334446666667775 55556666654433344566755 6778876 55666653 344
Q ss_pred EEEEc
Q 013881 423 RVWQW 427 (434)
Q Consensus 423 ~iwd~ 427 (434)
.||.+
T Consensus 308 ~lY~v 312 (353)
T PF00930_consen 308 HLYRV 312 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.80 E-value=0.32 Score=42.80 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=103.7
Q ss_pred EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceee--cCccceEEEEEEC-CCEEE-EecCCCcEE
Q 013881 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVG-ANKLY-SGSMDNSIR 296 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~h~~~v~~l~~~-~~~l~-s~s~dg~i~ 296 (434)
.+.+-...+..|+|+++ ++++....+.|..++.. + +.+... .+ ....-.|.+- ++.++ +--.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence 45666677999999987 77778888888888865 3 233333 33 3445666664 34444 444589999
Q ss_pred EEeCCCCe------EEEEEc-----cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCC---CCceEEEee--ec----C
Q 013881 297 VWNLETLQ------CIQTLT-----EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD---SGNLEVTYT--HN----E 354 (434)
Q Consensus 297 vwd~~~~~------~~~~~~-----~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~--~~----~ 354 (434)
++++.... ....+. .+...+-.++|+ .+.|+++-+..-..||.+.. ...+..... .. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99883311 112221 244567889998 56777777777777877654 222221111 11 1
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc----------cCcEEEEEecCCcEEEEeCCCCCEEE
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA----------KQEIRAIQLGPGGLFFTGDGTGQVRV 424 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~v~~~~~spdg~l~s~~~dg~i~i 424 (434)
.....++++.|. .+.+++.+.....|.++| .+++.+..+.- -...-.|+|.++|.|...++-+..++
T Consensus 170 ~~d~S~l~~~p~--t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPR--TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETT--TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred eccccceEEcCC--CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 123556666654 445777788888999999 55555544332 13578899999995555556666555
Q ss_pred E
Q 013881 425 W 425 (434)
Q Consensus 425 w 425 (434)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.53 Score=45.12 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=95.8
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCce------EE----EE-
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------GC----MI- 198 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------~~----~~- 198 (434)
.|+||+... +++..+.--.+.|.++.|+.+ ..|+....||+++++|+.... .+..+..+ .+ ..
T Consensus 62 ~I~iys~sG--~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSG--KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCC--CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccccccccc
Confidence 599998775 455555433389999999875 556677799999999987333 33332221 12 11
Q ss_pred eCCCEEEEEcCCcEEEEECCCCc-eE-Ee---cC-----CC-CcEEE-EEEeCC--EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 199 SEGPWIFIGVTNFVKAWNTQTNT-DL-SL---SG-----PV-GQVYA-MAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 199 ~~~~~l~~~~~~~i~~w~~~~~~-~~-~~---~~-----~~-~~v~~-l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
.++.+++...++.+.+.+-.... .. .+ .. +. ..... ..+..+ ..+....++.+.+.+-... .
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~ 211 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----K 211 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----c
Confidence 22445555555555444322211 10 01 00 00 00000 112222 3333344455554432221 0
Q ss_pred cceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccc-cccEEEEEEcCC
Q 013881 265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWDQ 324 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~ 324 (434)
.+. ...++..++++ +++++.-..+|.+.+.+..-.+.+..+... ......+.|.|+
T Consensus 212 ---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 212 ---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 011 23467776665 567888888899999887666666555544 344566666654
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0048 Score=59.26 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=60.0
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEE-EEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIR-AIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~-~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+.-+.|.|.-+ ++|.+..+|.|.+..+. .+.+..+. +...++ +++|.||| .|+.|-.||+|++-|+++|..+
T Consensus 22 ~i~~~ewnP~~d---LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMD---LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccc---hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 455666766655 89999999999998888 66666666 555566 99999999 9999999999999999998754
No 366
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.76 E-value=0.73 Score=47.65 Aligned_cols=221 Identities=11% Similarity=0.086 Sum_probs=116.1
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc--------EEEEEcc----------------CCCCEEEEEECCCc
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLP----------------SGSDKLYSGSKDET 173 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~--------V~~l~~s----------------~~~~~l~s~s~dg~ 173 (434)
.++.+++++.++.|+-.|..+| +.+-++...... ...+++- ..+..++.++.|+.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 4667888888999999999999 777766533211 1223331 13457888999999
Q ss_pred EEEEECCCCceEEEEecCCceE------------------EEEeCCCEEEEEc----------CCcEEEEECCCCceE-E
Q 013881 174 VRVWDCASGQCAGVINLGGEVG------------------CMISEGPWIFIGV----------TNFVKAWNTQTNTDL-S 224 (434)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~----------~~~i~~w~~~~~~~~-~ 224 (434)
|.-.|.++|+....+...+.+. -+..++.+++.+. ++.|+-+|.++++.+ .
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999999887765433221 0112333333321 467899999999876 2
Q ss_pred ecC-CCCcEEEEEEeCCEEEEEeCCC-cEEEEEcCCCCCccccceeecCccceEEEEEECCCE-EEEecCCCcEEEEeCC
Q 013881 225 LSG-PVGQVYAMAVGNDLLFAGTQDG-AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMDNSIRVWNLE 301 (434)
Q Consensus 225 ~~~-~~~~v~~l~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~s~dg~i~vwd~~ 301 (434)
... .... .......+....++.+. ....+|.+.+ .+..-.+...+ .. +.+++ ....-..+.|.-.|++
T Consensus 352 ~~~g~p~~-~~~~~~g~~~~~gg~n~W~~~s~D~~~g-----lvy~ptGn~~p--d~-~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 352 WDPGNPDP-TAPPAPGETYTRNTPNSWSVASYDEKLG-----LVYLPMGNQTP--DQ-WGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred EecCCCCc-ccCCCCCCEeccCCCCccCceEEcCCCC-----eEEEeCCCccc--cc-cCCccccCcccccceEEEEeCC
Confidence 221 1100 00001111111111111 1222222221 01100111000 00 00000 1111224567778888
Q ss_pred CCeEEEEEcc-cc---------ccE-EEEEE-cCC---EEEEEeCCCcEEEEEcCCCCceEE
Q 013881 302 TLQCIQTLTE-HT---------SVV-MSLLC-WDQ---FLLSCSLDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 302 ~~~~~~~~~~-~~---------~~v-~~l~~-~~~---~l~s~s~dg~i~vwd~~~~~~~~~ 348 (434)
+++....++. |. .++ ..+.. .++ .++.++.+|.+.++|.++++.+..
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 8888776654 21 111 22333 332 788999999999999998876544
No 367
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.75 E-value=0.24 Score=48.94 Aligned_cols=171 Identities=12% Similarity=0.086 Sum_probs=102.8
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC----CcEEEEECCCCceEEEEecCCceEEEEeCCC
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGEVGCMISEGP 202 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 202 (434)
..+.+.+.|.++. +...++.--. .-..++++++++++++.+.+ .++..-+..+...+..+.... +..+..+++
T Consensus 213 y~~~vSvID~etm-eV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK 289 (635)
T PRK02888 213 YRSLFTAVDAETM-EVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGK 289 (635)
T ss_pred eeEEEEEEECccc-eEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCC
Confidence 3456777787764 6655554322 34667899999999888632 233333333333333332221 112233566
Q ss_pred EEEEEcCCcEEEEECCC-----CceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccc--------cc
Q 013881 203 WIFIGVTNFVKAWNTQT-----NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE--------PA 266 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~-----~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~--------~~ 266 (434)
+... .++.|.++|..+ ........-......+.++|| .++++..+.+|.|.|+......+. ..
T Consensus 290 ~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 290 FKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred EEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 5555 467899999988 344444455667788999999 666677799999999987542110 01
Q ss_pred eeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC
Q 013881 267 ASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 302 (434)
....- ...-....|+ |+...+-..|..|..||+.+
T Consensus 369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111 1112344555 45667778899999999876
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.042 Score=52.04 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=87.2
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---------CCEEEEEeCCCcEEEEEcCCCCc--eEEEeeec
Q 013881 285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---------DQFLLSCSLDKTIKVWFATDSGN--LEVTYTHN 353 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---------~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~ 353 (434)
.|.++.....|+-.|++.|+.+.+++.+.. |.-+.+. ...-+.|-.|..|.-||.+-... +.....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455677778899999999999999988877 4433333 22345566788999999885544 11222221
Q ss_pred --CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc-cccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 354 --EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG-KIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 354 --~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
......+.+.. .. + +|++|+.+|.|++||- .+.... .+.. ..+|..|..+.|| .|+.. -+..+.+-++
T Consensus 427 y~~k~nFsc~aTT--~s-G-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATT--ES-G-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred cccccccceeeec--CC-c-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 11222333322 22 2 7999999999999998 443333 3333 7889999999999 44433 3455666554
No 369
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.69 E-value=0.31 Score=50.35 Aligned_cols=225 Identities=13% Similarity=0.079 Sum_probs=112.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCceEE---------E-------------------EeCCCEEEEEcCCcEE
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC---------M-------------------ISEGPWIFIGVTNFVK 213 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~---------~-------------------~~~~~~l~~~~~~~i~ 213 (434)
+..|+.++.++.|.-.|..+|+.+-.+........ + ...+++++...|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677778888888889998888877765433211 0 0122444455688999
Q ss_pred EEECCCCceEEecCCCCcEE-----------------EEEEeCCEEEEEeC----------CCcEEEEEcCCCCCccccc
Q 013881 214 AWNTQTNTDLSLSGPVGQVY-----------------AMAVGNDLLFAGTQ----------DGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~v~-----------------~l~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~ 266 (434)
-.|.++++..--.+..+.|. .-....+.+++|+. +|.|+-+|.++++..+
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W--- 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW--- 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee---
Confidence 99999998773323222221 11223446777743 6889999999985432
Q ss_pred eeecCccceEEEEEECCCEEEEecCCC-cEEEEeCCCCeEEEEEccccccEEEEEEc-C-CEEEEEeCCCcEEEEEcCCC
Q 013881 267 ASLKGHSLAVVSLVVGANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCW-D-QFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~dg~i~vwd~~~~ 343 (434)
.+..-..........++....++.+. ...-+|.+.+....-. +...+ .+. + +.....-..+.|.-.|.+++
T Consensus 351 -~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 -AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred -EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCC
Confidence 22110000001111222222122111 2333444433322111 11100 000 0 00000112345555666666
Q ss_pred CceEEEeeecCCcc---------EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc
Q 013881 344 GNLEVTYTHNEEHG---------VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI 396 (434)
Q Consensus 344 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 396 (434)
+....+...+++.. ...+. ..++...+.++.++.+|.++++|.++++.+...
T Consensus 425 k~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 425 KERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 55554444222111 11111 002222347999999999999999999877653
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.67 E-value=0.0062 Score=35.23 Aligned_cols=36 Identities=39% Similarity=0.502 Sum_probs=25.2
Q ss_pred eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
+++..+..|...|.++.+. ++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4555666677777777776 45777777777777774
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.64 E-value=0.7 Score=44.50 Aligned_cols=239 Identities=14% Similarity=0.155 Sum_probs=121.7
Q ss_pred cEEEEEccCCCCEEEEE-ECCC----cEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec
Q 013881 152 VVSGITLPSGSDKLYSG-SKDE----TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~-s~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
.+...++||++++||-+ +..| +|++.|+++++.+... +.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------------------------------------i~ 168 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------------------------------------IE 168 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------------------------------------EE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------------------------------------cc
Confidence 44467889999988854 4444 5899999988655321 00
Q ss_pred CCCCcEEEEEEeCC---EEEEEeC----------CCcEEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEe-c
Q 013881 227 GPVGQVYAMAVGND---LLFAGTQ----------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG-S 290 (434)
Q Consensus 227 ~~~~~v~~l~~~~~---~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~-s 290 (434)
.. ....+.|.++ ++++... ...|+.|.+.+....-..+............+.. ++++|+.. .
T Consensus 169 ~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 169 NP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred cc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 00 1112677666 3333322 2236777776653211122222222221344544 45664432 2
Q ss_pred --CC-CcEEEEeCCCC----eEEEEEccc-cccEEEEEEcCCEEEEEeC----CCcEEEEEcCCCCc--eE-EEeeecCC
Q 013881 291 --MD-NSIRVWNLETL----QCIQTLTEH-TSVVMSLLCWDQFLLSCSL----DKTIKVWFATDSGN--LE-VTYTHNEE 355 (434)
Q Consensus 291 --~d-g~i~vwd~~~~----~~~~~~~~~-~~~v~~l~~~~~~l~s~s~----dg~i~vwd~~~~~~--~~-~~~~~~~~ 355 (434)
.+ ..+.+.|+..+ .....+... .+....+...++.|..-+. .+.|.-.++.+... .. .+..+...
T Consensus 247 ~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred ccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 23 46888898874 233333333 3333445555664444333 36677778777663 22 34444433
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCC--eEEEEeCCCCccccccc--ccCcEEEEEecCCc--EEEEe-C--CCCCEEEEE
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDN--SVRFYDLPSFAERGKIF--AKQEIRAIQLGPGG--LFFTG-D--GTGQVRVWQ 426 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~--~~~~v~~~~~spdg--~l~s~-~--~dg~i~iwd 426 (434)
..+..+... +..+++....++ .|+++++..+.....+. ..+.|..+...+++ ++++- + .-+++..||
T Consensus 327 ~~l~~~~~~----~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 327 VSLEDVSLF----KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp EEEEEEEEE----TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred eeEEEEEEE----CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 344444432 223555555555 58889998333333322 34556666666665 33333 2 356899999
Q ss_pred ccCCcc
Q 013881 427 WCNGPV 432 (434)
Q Consensus 427 ~~~g~~ 432 (434)
+.++++
T Consensus 403 ~~t~~~ 408 (414)
T PF02897_consen 403 LATGEL 408 (414)
T ss_dssp TTTTCE
T ss_pred CCCCCE
Confidence 998875
No 372
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.49 Score=41.83 Aligned_cols=158 Identities=9% Similarity=0.066 Sum_probs=108.4
Q ss_pred CCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC---
Q 013881 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL--- 303 (434)
Q Consensus 227 ~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~--- 303 (434)
.-..-+..+.++.++.+.+..+.-+++.|+.+.... ..+..+. -..--.++..+|++.+.+..|.-+.+.|+.+.
T Consensus 84 ~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP-~~~~~ln-t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 84 NARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSP-TLIGFLN-TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred ehhhhhheeEecccEEEEEcCCCceEEEeccCCCCc-ceecccc-CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 344567788899999999999999999999987532 1111111 12455778889999999997777778888653
Q ss_pred eEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEE
Q 013881 304 QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383 (434)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 383 (434)
++...+.........++.+|++-..+..|+-+.|-|+.+......+........+.++..+++.. +++.. +--+.
T Consensus 162 ~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~---y~vvy--~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA---YLVVY--DEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee---EEEEc--ccceE
Confidence 34445555555567888899999999999999999998887665555444444566665544322 44433 33466
Q ss_pred EEeCCCCc
Q 013881 384 FYDLPSFA 391 (434)
Q Consensus 384 iwd~~~~~ 391 (434)
+-|..+.+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 66666544
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.53 E-value=0.0093 Score=37.14 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=30.0
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
...|..++|+|..++||.++.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.49 E-value=1.3 Score=45.72 Aligned_cols=301 Identities=12% Similarity=0.095 Sum_probs=153.0
Q ss_pred EEEecCCCeEEEEeCC-CC-----ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE-------EEE
Q 013881 122 CMYGEKCKFLHSWTVG-DG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-------GVI 188 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~-~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-------~~~ 188 (434)
.+.+..+|.++..-+. ++ ..+...+-+-..-..|+..- +..+|++||.-|.=.+-.+.+..-. .++
T Consensus 272 yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L-~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~ 350 (1096)
T KOG1897|consen 272 YLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYL-DNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETF 350 (1096)
T ss_pred EEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcc-cCceEEEeccCCceeeEEccccCCCCchhhhhhhc
Confidence 4556666665554433 22 11112222333334444444 4457888888776666666544322 333
Q ss_pred ecCCceEEEEe-------CCCEEEEE---cCCcEEEEECCCCc----eEEecCCCCcEEEEE--EeCC---EEEEEeCCC
Q 013881 189 NLGGEVGCMIS-------EGPWIFIG---VTNFVKAWNTQTNT----DLSLSGPVGQVYAMA--VGND---LLFAGTQDG 249 (434)
Q Consensus 189 ~~~~~~~~~~~-------~~~~l~~~---~~~~i~~w~~~~~~----~~~~~~~~~~v~~l~--~~~~---~l~~g~~dg 249 (434)
..-+++..+.- .+.++.++ .++.+++....-+- ...+.+ ...++.+. +.++ +|+.+--+.
T Consensus 351 ~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e 429 (1096)
T KOG1897|consen 351 VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE 429 (1096)
T ss_pred ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc
Confidence 33334433321 23444443 26788887654332 224444 45566666 4333 444443332
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEcccccc-EEEEEEcCCEEEE
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV-VMSLLCWDQFLLS 328 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~~l~s 328 (434)
-++..+... ........+......+.+-...++.|+=.. ...||+++-. ..+..+....+. +..+..+...++.
T Consensus 430 -Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvv 504 (1096)
T KOG1897|consen 430 -TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVV 504 (1096)
T ss_pred -eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEE
Confidence 334444332 000111111111222222222344433222 2356666643 223333333222 2333333557777
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc---EEEEEeCCCeEEEE-eCCCCcccccccc-----c
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVRFY-DLPSFAERGKIFA-----K 399 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~iw-d~~~~~~~~~~~~-----~ 399 (434)
++.++.+...++...+ +.....+.-+..+.++.++|.+++.+ ++++|..+..+.+. -++....+..... .
T Consensus 505 A~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iP 583 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIP 583 (1096)
T ss_pred ecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccc
Confidence 7777888888877665 44555555566788888888766665 89999887765543 3444433333211 3
Q ss_pred CcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 400 QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 400 ~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
..|.-..+-.|. +|.++..||.+.-|-+..+
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 345555666667 9999999999987665543
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.36 E-value=0.11 Score=53.01 Aligned_cols=135 Identities=9% Similarity=0.078 Sum_probs=92.8
Q ss_pred CCCEEEEE-ECCCcEEEEECCCCceEEEEecCCc--eEEEEe--------CCCEEEEEcCCcEEEEECCCCc--eEE---
Q 013881 161 GSDKLYSG-SKDETVRVWDCASGQCAGVINLGGE--VGCMIS--------EGPWIFIGVTNFVKAWNTQTNT--DLS--- 224 (434)
Q Consensus 161 ~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~--------~~~~l~~~~~~~i~~w~~~~~~--~~~--- 224 (434)
+.++|+.- .....|+-.|++.|+.+..+..+.. +..+.+ +...++.-.++.+..||++-.. .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44454443 4567899999999999999988754 344443 2334445567899999998643 221
Q ss_pred -ecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeC
Q 013881 225 -LSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 225 -~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~ 300 (434)
.........|++-..+ .||+|+.+|.|++||--.. +....+.+-..+|..|..+ |.++++.+ +..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~----~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK----RAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecccch----hhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1224456778888877 9999999999999994321 4445566778899888874 66655544 567777775
No 376
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.35 E-value=0.28 Score=46.60 Aligned_cols=144 Identities=16% Similarity=0.260 Sum_probs=94.6
Q ss_pred CEEEEecCCCcEEEEeCCCCe-----EEEEEccccccEEEEEEc------CCEEEEEeCCCcEEEEEcCCC---------
Q 013881 284 NKLYSGSMDNSIRVWNLETLQ-----CIQTLTEHTSVVMSLLCW------DQFLLSCSLDKTIKVWFATDS--------- 343 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~l~~~------~~~l~s~s~dg~i~vwd~~~~--------- 343 (434)
+.+++|+..|.++||+..... .+-+ ..-..+|..+..- +...++.=.-..+.||.+...
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 589999999999999986533 1111 1234677666653 223334455677888877322
Q ss_pred CceEEEeeecCCccEEEEEeccCCCC--CcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCC
Q 013881 344 GNLEVTYTHNEEHGVLALCGMPDSEG--KPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg 420 (434)
-.+...+.|.-......++.-+.+.- ..+|++-+.||.+.+|+-+.......+..---...+.+.+.- .|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 13456666666666677776665543 368999999999999998875544443332222345677766 888898888
Q ss_pred CEEEEEcc
Q 013881 421 QVRVWQWC 428 (434)
Q Consensus 421 ~i~iwd~~ 428 (434)
.|.-|+..
T Consensus 197 ~l~~Yky~ 204 (418)
T PF14727_consen 197 TLECYKYQ 204 (418)
T ss_pred eEEEecHH
Confidence 88888763
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.27 E-value=1.7 Score=44.87 Aligned_cols=313 Identities=15% Similarity=0.115 Sum_probs=161.6
Q ss_pred ccccceEEEEEeCC--------cEEEecCCCeEEEEe-CCCCceEEEE--ecC--ccccEEEEEccCCCCEEEEEECCCc
Q 013881 107 VIKTDILCRNWVQG--------NCMYGEKCKFLHSWT-VGDGFKLLTQ--LEG--HQKVVSGITLPSGSDKLYSGSKDET 173 (434)
Q Consensus 107 ~~~~~i~c~~~~~~--------~~~~g~~d~~i~vwd-~~~~~~~~~~--l~~--h~~~V~~l~~s~~~~~l~s~s~dg~ 173 (434)
.-+.+|.|+++++- .++.|..+..+.+-- ..+. ..+.. +.+ -...|.-..|-.|..+|+++..||.
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA 606 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence 33458999998632 244455444333322 2222 22221 222 1245556666667899999999999
Q ss_pred EEEEEC--CCCceEEEE--ecCCce---EEEEe-CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEE-EEe----CC
Q 013881 174 VRVWDC--ASGQCAGVI--NLGGEV---GCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM-AVG----ND 240 (434)
Q Consensus 174 v~iwd~--~~~~~~~~~--~~~~~~---~~~~~-~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l-~~~----~~ 240 (434)
+.-+.+ .+++.-..- ..+... ..+.. ....+++..|.-..+|.....-..+-..- ..+..+ .|+ ++
T Consensus 607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-KEVNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-HHhhhhcccccccCCc
Confidence 876654 444322111 222211 12222 34456666666555555444333211111 111111 222 22
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-C-EEEEe-----------cCC---CcEEEEeCCCCe
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-N-KLYSG-----------SMD---NSIRVWNLETLQ 304 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~l~s~-----------s~d---g~i~vwd~~~~~ 304 (434)
.|+++.. +.+.+..++.-... .+++..-+ .....+++.+ . .+.+. +.. ..++++|-.+.+
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl--~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKL--HIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred eEEEecC-CceEEEEecchhhc--ceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 4444443 45666655443211 11111111 1112222222 1 11111 111 246777777665
Q ss_pred EEEEEccc-cc---cEEEEEEc---CCEEEEEeC----------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 305 CIQTLTEH-TS---VVMSLLCW---DQFLLSCSL----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 305 ~~~~~~~~-~~---~v~~l~~~---~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
.+...+-. .. .+.+..+. +.++++|+. .|.|.||...+...++....+.-...+.++...
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--- 838 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--- 838 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh---
Confidence 54433211 11 22333344 457777763 578999988886777777766666666666532
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccc-cccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERG-KIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
+++++| +-...|++|++.+.+.+. .-.+...+..+...-.| .+++|+--+++.+-.....+
T Consensus 839 -ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 -NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 222443 346789999999884443 34457788888888888 99999988888776655433
No 378
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.23 E-value=0.76 Score=40.47 Aligned_cols=200 Identities=11% Similarity=0.098 Sum_probs=99.1
Q ss_pred EEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 144 TQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.++.+...
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------------------------- 62 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------------------------- 62 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S-------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC-------------------------------
Confidence 45666667799999999765 5556667788888886 47777765432
Q ss_pred EEecCCCCcEEEEEEeCC-EEE-EEeCCCcEEEEEcCCCCCcccc--ceee-----cCccceEEEEEECC--CEEEEecC
Q 013881 223 LSLSGPVGQVYAMAVGND-LLF-AGTQDGAILAWKFNVTTNCFEP--AASL-----KGHSLAVVSLVVGA--NKLYSGSM 291 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~-~l~-~g~~dg~i~vwd~~~~~~~~~~--~~~~-----~~h~~~v~~l~~~~--~~l~s~s~ 291 (434)
+ .+....|++..+ .++ +.-.++.+.++++......... ...+ ..+...+-.+++++ +.|+.+-.
T Consensus 63 ----g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 63 ----G-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp ----S--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ----C-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 2 234556666655 444 4445788888888543221111 1111 12445578888873 56777766
Q ss_pred CCcEEEEeCCC---CeEEE--EEc------cccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC---
Q 013881 292 DNSIRVWNLET---LQCIQ--TLT------EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE--- 354 (434)
Q Consensus 292 dg~i~vwd~~~---~~~~~--~~~------~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--- 354 (434)
..-..+|.+.. ...+. ... .....+.+++++ +++++....+..|..+|. +++.+....-...
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHG 216 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccC
Confidence 66566665543 11111 111 123446788887 457777778888888883 4443333322221
Q ss_pred ----CccEEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 355 ----EHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 355 ----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
-.+.-.+++.+++. |...++-+..++|
T Consensus 217 l~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~f 247 (248)
T PF06977_consen 217 LSKDIPQPEGIAFDPDGN----LYIVSEPNLFYRF 247 (248)
T ss_dssp -SS---SEEEEEE-TT------EEEEETTTEEEEE
T ss_pred cccccCCccEEEECCCCC----EEEEcCCceEEEe
Confidence 12355666655432 4555566666554
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.043 Score=54.82 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=76.6
Q ss_pred EEEEeCC--EEEEEe----CCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC--EEEEecCCCcEEEEeCCCCeE
Q 013881 234 AMAVGND--LLFAGT----QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305 (434)
Q Consensus 234 ~l~~~~~--~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~ 305 (434)
-..|+|. ++++++ ..|+|.||- +++ ++.... ...-.+++++|++. .|+.|-.-|.+.+|...+.+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtG----EPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTG----EPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCC----CCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3456666 555554 458888873 333 221111 12233567899976 467777889999999988887
Q ss_pred EEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 013881 306 IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 306 ~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 345 (434)
-.....|..+|..+.|+ |..|+++..-|.+.+|.....+.
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 77778899999999998 88999999999999998764433
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.031 Score=57.27 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=81.0
Q ss_pred CCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe
Q 013881 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 227 ~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 304 (434)
.....+.+.+.-...++.|+..|.+...|+...- .+...-..-..+|++++++ |..++.|-.+|.|.+||+..++
T Consensus 87 ~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 3445555666655689999999999999987642 2223333446789999996 6788999999999999999999
Q ss_pred EEEEEccccccEEEEEEc-----CCEEEEEeCCCcEEEEEc
Q 013881 305 CIQTLTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~-----~~~l~s~s~dg~i~vwd~ 340 (434)
.++.+..|..+.+.+.+. +..++++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999999888887776654 345777776675 5543
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.3 Score=46.56 Aligned_cols=139 Identities=9% Similarity=0.100 Sum_probs=88.0
Q ss_pred CCCEEEEE--cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---------EEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 200 ~~~~l~~~--~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
+..+++.. ....++-.|++.|+.+..-.....|.-+.+.|+ .-+.|-.|..|.-||.+..... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeee
Confidence 33444442 345888889999998743333333666666665 4567888999999999865431 2222
Q ss_pred ecCcc----ceEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 013881 269 LKGHS----LAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 269 ~~~h~----~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 341 (434)
.++|. ..-.|++-. ..++++|+.+|.||+||--..+....+.+-..+|..+... |++|+.. .+..+.+-++.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 23332 223444443 5699999999999999963333344567778888877765 6665544 46666666653
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.10 E-value=0.89 Score=42.85 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=89.5
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecC---c-----cceEEEE-EECCCEEEEe--cC----CCcEEEEeCCCCeE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKG---H-----SLAVVSL-VVGANKLYSG--SM----DNSIRVWNLETLQC 305 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~---h-----~~~v~~l-~~~~~~l~s~--s~----dg~i~vwd~~~~~~ 305 (434)
+++-|-.++.|+|.|+.+.....+....+.. + ..+-+.- ..+|+.++++ .. -|-+.+.|-++.+.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v 169 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV 169 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc
Confidence 4444557889999999865433233333332 1 1111111 1246666653 22 35688888888777
Q ss_pred EEEEcccccc-E--EEEEEc--CCEEEEEe--------------------CCCcEEEEEcCCCCceEEEeeecCCccEEE
Q 013881 306 IQTLTEHTSV-V--MSLLCW--DQFLLSCS--------------------LDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360 (434)
Q Consensus 306 ~~~~~~~~~~-v--~~l~~~--~~~l~s~s--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 360 (434)
.......... - ..+-+. .+.+++.. ...++.+||+.+.+.++.+.........+.
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLE 249 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLE 249 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEE
Confidence 7766543221 1 233333 34555543 346799999998888877776665556778
Q ss_pred EEeccCCCCCcEEEEEeCCCeEEEEeC-CCCc----ccccccc------------------cCcEEEEEecCCc--EEEE
Q 013881 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL-PSFA----ERGKIFA------------------KQEIRAIQLGPGG--LFFT 415 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~----~~~~~~~------------------~~~v~~~~~spdg--~l~s 415 (434)
+.|..++....-++.+.-..+|..|-- ..++ .+..+.. ..-|+.|.+|.|. +.++
T Consensus 250 vRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs 329 (461)
T PF05694_consen 250 VRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS 329 (461)
T ss_dssp EEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE
T ss_pred EEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE
Confidence 888877665544444444555555433 3321 1111110 2347999999998 6667
Q ss_pred eCCCCCEEEEEccC
Q 013881 416 GDGTGQVRVWQWCN 429 (434)
Q Consensus 416 ~~~dg~i~iwd~~~ 429 (434)
.-.+|.|+.||+..
T Consensus 330 ~W~~GdvrqYDISD 343 (461)
T PF05694_consen 330 NWLHGDVRQYDISD 343 (461)
T ss_dssp ETTTTEEEEEE-SS
T ss_pred cccCCcEEEEecCC
Confidence 77899999999976
No 383
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.09 E-value=1.4 Score=42.06 Aligned_cols=259 Identities=12% Similarity=0.156 Sum_probs=134.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-----eEEEEecCCceEEEEe-------CCCEEEEEcCCcEEEEECCCCc-------
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQ-----CAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTNT------- 221 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~~w~~~~~~------- 221 (434)
+...|+.||..|.++|++..... .+-+.+...++..+.. ....|++-....+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45789999999999999986543 5566667777776643 3457778888889888873211
Q ss_pred eE---EecCCCC--cEEEEEE---e----CCEEEEEeCCCcEEEEEcCCCCCccccceeecC--ccceEEEEEECCCEEE
Q 013881 222 DL---SLSGPVG--QVYAMAV---G----NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGANKLY 287 (434)
Q Consensus 222 ~~---~~~~~~~--~v~~l~~---~----~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~l~ 287 (434)
.. .+..|.- ....++. . .+++.+=+.||.+.+++-+.- .....+.. ..++ .+....-+.|+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~----~f~~~lp~~llPgP-l~Y~~~tDsfv 190 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF----AFSRFLPDFLLPGP-LCYCPRTDSFV 190 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE----EEEEEcCCCCCCcC-eEEeecCCEEE
Confidence 11 2222322 2222322 1 238999999999999987653 11222222 1222 22233456788
Q ss_pred EecCCCcEEEEeCCCC--------------------eE---EEEEccccccEEEEEEc-----CCEEEEEeCCCcEEEEE
Q 013881 288 SGSMDNSIRVWNLETL--------------------QC---IQTLTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 288 s~s~dg~i~vwd~~~~--------------------~~---~~~~~~~~~~v~~l~~~-----~~~l~s~s~dg~i~vwd 339 (434)
+++.+..|..|....- +. -.++. -...+..+..- ...+++-+ ...+.+.+
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~ 268 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLK 268 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEc
Confidence 8887878877764210 00 00110 01112222211 11222222 22333333
Q ss_pred cCCCCceEEEeeecCCccEEEEEec---cCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC----CcE
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGM---PDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP----GGL 412 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp----dg~ 412 (434)
..+.+...............-.. ..+.....+++++.++++.||.=.+..=...+. ..+| ++.... +|.
T Consensus 269 --~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 269 --DNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-HVPV-ALSVANFNGLKGL 344 (418)
T ss_pred --CCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-CCCE-EEEecccCCCCce
Confidence 33344333333222111111111 122222358888999999999654322222221 2222 333322 459
Q ss_pred EEEeCCCCCEEEEEccCC
Q 013881 413 FFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 413 l~s~~~dg~i~iwd~~~g 430 (434)
|++-+.+|.|.+-=+-|.
T Consensus 345 IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEEcCCCcEEEEEeCCC
Confidence 999999999987655443
No 384
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.07 E-value=0.33 Score=37.62 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=75.5
Q ss_pred EEccCCCCEEEEEECCCcEEEEECCC--------CceEEEEecCCceEEEEe-------CCCEEEEEcCCcEEEEECCCC
Q 013881 156 ITLPSGSDKLYSGSKDETVRVWDCAS--------GQCAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 156 l~~s~~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~~w~~~~~ 220 (434)
-.|.....-|+.++.-|.|.|++... ...+..++....+.++.. ....|+.++...+..||+..+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 34655666788888899999998763 346778888888888853 467899999999999999999
Q ss_pred ceEEecCCCCcEEEEEEe-----CCEEEEEeCCCcEEEEEcCC
Q 013881 221 TDLSLSGPVGQVYAMAVG-----NDLLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~-----~~~l~~g~~dg~i~vwd~~~ 258 (434)
..+....-...|.++.+. +.-++..+.+..|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 888777777888888773 22444444455566665543
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=0.96 Score=45.37 Aligned_cols=211 Identities=15% Similarity=0.228 Sum_probs=119.6
Q ss_pred CeEEEEeCCCC-ceEEEEecCccccEEEEEccCCCCEEEEEECC------CcEEEEECCCCceEEEEecCC---ceEEEE
Q 013881 129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMI 198 (434)
Q Consensus 129 ~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~ 198 (434)
..+..+|..++ ...+..+. +...-.++++. ++...++|+.| .++..||..+.+-...-.... ......
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 57888888876 33444444 22333344443 45778888888 367788888776433222221 122223
Q ss_pred eCCCEEEEE-cCC-----cEEEEECCCCceEEecC---CCCcEEEEEEeCCEEEEEeCCC------cEEEEEcCCCCCcc
Q 013881 199 SEGPWIFIG-VTN-----FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQDG------AILAWKFNVTTNCF 263 (434)
Q Consensus 199 ~~~~~l~~~-~~~-----~i~~w~~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~dg------~i~vwd~~~~~~~~ 263 (434)
.++.+-++| .++ .+..||..+.+...... .........+...+.++|+.++ ++..||..++. +
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--W 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--e
Confidence 345544444 343 68889998887653332 2233334444455777777554 46677776653 3
Q ss_pred ccceeecCccceEEEEEECCCEEEEecCCCc-----EEEEeCCCCeEE--EEEccccccEEEEEEcCCEEEEEeCCCc--
Q 013881 264 EPAASLKGHSLAVVSLVVGANKLYSGSMDNS-----IRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLDKT-- 334 (434)
Q Consensus 264 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~dg~-- 334 (434)
..+..+..-.........++...+.|+.|+. |..||..+.+-. ..+......+......+...++|+.|+.
T Consensus 457 ~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN 536 (571)
T ss_pred eecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccc
Confidence 3344443333333345556777888887763 777888775543 3333344445555566778888887653
Q ss_pred ---EEEEEcCCC
Q 013881 335 ---IKVWFATDS 343 (434)
Q Consensus 335 ---i~vwd~~~~ 343 (434)
|..||..+.
T Consensus 537 l~~ve~ydp~~d 548 (571)
T KOG4441|consen 537 LNTVECYDPETD 548 (571)
T ss_pred cceeEEcCCCCC
Confidence 555554433
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.00 E-value=1 Score=39.72 Aligned_cols=184 Identities=8% Similarity=0.040 Sum_probs=113.5
Q ss_pred eEEEEecCcc--ccEEEEEccCCCCEEEEEECCC--cEEEEECCCCceEEEEecCCce--EEEE-eCCCEEEEE-cCCcE
Q 013881 141 KLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMI-SEGPWIFIG-VTNFV 212 (434)
Q Consensus 141 ~~~~~l~~h~--~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~-~~~~i 212 (434)
+.+.++. |. .-...+.|..++.++-+.+.-| .|+.+|+.+++.......+... ..+. .++.+.... .++..
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeE
Confidence 5556655 43 3456788877888888888876 7999999999998888877543 1222 233333334 47788
Q ss_pred EEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeec--Cccc---eEEEEEEC-CCEE
Q 013881 213 KAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSL---AVVSLVVG-ANKL 286 (434)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~h~~---~v~~l~~~-~~~l 286 (434)
.+||..+-+.+......+.=+.++...+.|+.......|.++|..+-. ....+. .... .+..+.+- |...
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~----~~~~i~V~~~g~pv~~LNELE~i~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK----EVRTIQVTDNGRPVSNLNELEYINGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S----EEEEEE-EETTEE---EEEEEEETTEEE
T ss_pred EEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc----eEEEEEEEECCEECCCcEeEEEEcCEEE
Confidence 999999887774444456777888777778887888899999987642 222222 2222 34455554 4444
Q ss_pred EEecCCCcEEEEeCCCCeEEEEEcc------------c---cccEEEEEEc--C-CEEEEE
Q 013881 287 YSGSMDNSIRVWNLETLQCIQTLTE------------H---TSVVMSLLCW--D-QFLLSC 329 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~~~~~~~~~~------------~---~~~v~~l~~~--~-~~l~s~ 329 (434)
+-.=....|...|..+|+.+..+.. . ......|+++ . .+++||
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5555677888899999998876631 0 2346889997 3 345544
No 387
>smart00356 ZnF_C3H1 zinc finger.
Probab=95.97 E-value=0.0048 Score=33.34 Aligned_cols=22 Identities=23% Similarity=0.809 Sum_probs=19.4
Q ss_pred cceeeeeccCccCCCC-CCcccc
Q 013881 35 QKVCNYWRAGKCNRFP-CPYLHR 56 (434)
Q Consensus 35 ~~~~~~~~~~~~~~~~-c~~l~~ 56 (434)
.++|.+|+.|.|.+-+ |+|+|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 4589999999999987 999985
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=1.4 Score=40.36 Aligned_cols=191 Identities=13% Similarity=0.041 Sum_probs=106.3
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC---c-----eEEEE
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---E-----VGCMI 198 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~-----~~~~~ 198 (434)
..+.|+-|+..++....... .+.+.++..-..+..|+++.. | +.+++.+++..+..+.... + -..+.
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~---p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~ 119 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPS---PGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD 119 (307)
T ss_pred CCCeEEEecCCcCceEEEEC---CCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCCceeEc
Confidence 55678888887663333322 233444444444444554433 3 6777776666533332211 1 11223
Q ss_pred eCCCEEEEEcC------------CcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC--
Q 013881 199 SEGPWIFIGVT------------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN-- 261 (434)
Q Consensus 199 ~~~~~l~~~~~------------~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~-- 261 (434)
+++.+.+.... +.++.++........+..+-..-+.|+|+|+ ++++=+..+.|..|++.....
T Consensus 120 pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~ 199 (307)
T COG3386 120 PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI 199 (307)
T ss_pred CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc
Confidence 45555555333 2355555533334455555777789999999 455555568898888863111
Q ss_pred ccc-cceeecCccceEEEEEE--CCCEEEEecCCC-cEEEEeCCCCeEEEEEccccccEEEEEEcC
Q 013881 262 CFE-PAASLKGHSLAVVSLVV--GANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (434)
Q Consensus 262 ~~~-~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (434)
..+ ............-.++. ++++.+++-.+| .|.+|+.. ++++..+......+++++|-+
T Consensus 200 ~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 200 GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 001 11111122233333444 455554444444 99999988 999999888878888888874
No 389
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.60 E-value=2.1 Score=40.47 Aligned_cols=218 Identities=18% Similarity=0.190 Sum_probs=124.7
Q ss_pred EEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCc--cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC
Q 013881 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192 (434)
Q Consensus 115 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 192 (434)
....++.++.+..+|.|.-.|.+++ +.+.....- ...+..-.+..+|+ |+.++.++.+...|..+|+.+-......
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 3456777888888998999998888 433322211 12222222323565 7888889999999999999998888777
Q ss_pred ---ceEEEEeCCCEEEEE-cCCcEEEEECCCCceE-EecCC---CCcEEE-EEEeCCEEEEEeC--CCcEEEEEcCCCCC
Q 013881 193 ---EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP---VGQVYA-MAVGNDLLFAGTQ--DGAILAWKFNVTTN 261 (434)
Q Consensus 193 ---~~~~~~~~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~---~~~v~~-l~~~~~~l~~g~~--dg~i~vwd~~~~~~ 261 (434)
-.......+..++.. .++.+...+..+++.. ..... ...+.. .......++.+.. ++.+.-.|...+..
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred CeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 111222344555555 5788888888888765 21111 111111 1133346666666 66677777766643
Q ss_pred ccccceee-cCccce-------EEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEe---
Q 013881 262 CFEPAASL-KGHSLA-------VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCS--- 330 (434)
Q Consensus 262 ~~~~~~~~-~~h~~~-------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s--- 330 (434)
.+...... .+.... ...+. .+..++.++.++.+...|..+++.+..+... ....+.-+.+..
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~~~~~~~~~~~~ 294 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQGSGLYTTPVAG 294 (370)
T ss_pred eeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEecc------cEeccCCeeEEeecC
Confidence 32211111 111100 01111 1234577778888999999999999888764 111111122221
Q ss_pred CCCcEEEEEcC
Q 013881 331 LDKTIKVWFAT 341 (434)
Q Consensus 331 ~dg~i~vwd~~ 341 (434)
.||.+.++...
T Consensus 295 ~dG~v~~~~~~ 305 (370)
T COG1520 295 ADGKVYIGFTD 305 (370)
T ss_pred CCccEEEEEec
Confidence 57888887543
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.55 E-value=3.4 Score=42.51 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=54.1
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCC-CceEEEEecC-CceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLG-GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~ 228 (434)
-.|..|.++|+|++|+-.|..| |.|-.+.. .-....+..+ ..+.|- .+.+. .......+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Cr----------------t~~v~--~~~~~~~~ 145 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCR----------------TVPVD--ERFFTSNS 145 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEE----------------EEEec--hhhccCCC
Confidence 4688888999999999888877 44444422 1101111111 111111 11110 11112345
Q ss_pred CCcEEEEEEeCC-----EEEEEeCCCcEEEEEcCCCC
Q 013881 229 VGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 229 ~~~v~~l~~~~~-----~l~~g~~dg~i~vwd~~~~~ 260 (434)
...|..+.|+|. .|++=+.|+++++||+....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 678889999876 88899999999999997543
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.48 E-value=1.6 Score=38.42 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=105.4
Q ss_pred cEEEEEE-eCC-EEEEEeCCC--cEEEEEcCCCCCccccceeecCccceEEEEEECCCEE-EEecCCCcEEEEeCCCCeE
Q 013881 231 QVYAMAV-GND-LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL-YSGSMDNSIRVWNLETLQC 305 (434)
Q Consensus 231 ~v~~l~~-~~~-~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~s~dg~i~vwd~~~~~~ 305 (434)
-.-.+.| ..+ ++-+.+.-| .|+.+|+.++.. .....+. ...---.+..-++.| ...=.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~-~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV--LQSVPLP-PRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE--EEEEE-T-TT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE--EEEEECC-ccccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence 3456777 555 555556555 688889888732 1111222 122223444445544 4455688999999999999
Q ss_pred EEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc---cEEEEEeccCCCCCcEEEEEeCCCeE
Q 013881 306 IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH---GVLALCGMPDSEGKPVLLCSCNDNSV 382 (434)
Q Consensus 306 ~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i 382 (434)
+.++.- ...=..++.+++.|+.......|+++|..+.+....+....... .+..+.+. ++.+.|=-=....|
T Consensus 123 ~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i----~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI----NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE----TTEEEEEETTSSEE
T ss_pred EEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE----cCEEEEEeCCCCeE
Confidence 988854 35667788888888888888999999988776665555443332 23334443 22233333345667
Q ss_pred EEEeCCCCccccccc----------------ccCcEEEEEecCCc--EEEEeC
Q 013881 383 RFYDLPSFAERGKIF----------------AKQEIRAIQLGPGG--LFFTGD 417 (434)
Q Consensus 383 ~iwd~~~~~~~~~~~----------------~~~~v~~~~~spdg--~l~s~~ 417 (434)
...|..+|+....+. ..+-.+.|++.|+. +++||=
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 777888877655432 12347899998877 777763
No 392
>PHA03098 kelch-like protein; Provisional
Probab=95.44 E-value=0.76 Score=45.96 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=87.5
Q ss_pred EeCCEEEEEeCCC------cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC-----CcEEEEeCCCCeE
Q 013881 237 VGNDLLFAGTQDG------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQC 305 (434)
Q Consensus 237 ~~~~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~ 305 (434)
....+++.|+.++ .+..||..+.. +.....+.........+..++..++.|+.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3333666665442 46667766542 222222222222233445566777777765 3577888876543
Q ss_pred EE--EEccccccEEEEEEcCCEEEEEeCC------CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe
Q 013881 306 IQ--TLTEHTSVVMSLLCWDQFLLSCSLD------KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (434)
Q Consensus 306 ~~--~~~~~~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (434)
.. .+.............+...+.|+.+ ..+..||..+..-.. ...........+... .++.+++.|+
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~----~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIY----HDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEE----ECCEEEEECC
Confidence 22 1111111222233446666666632 457888876543211 111111100111111 1223666665
Q ss_pred CC--------CeEEEEeCCCCc--ccccccc-cCcEEEEEecCCc-EEEEeCCC-----CCEEEEEccCCc
Q 013881 378 ND--------NSVRFYDLPSFA--ERGKIFA-KQEIRAIQLGPGG-LFFTGDGT-----GQVRVWQWCNGP 431 (434)
Q Consensus 378 ~d--------g~i~iwd~~~~~--~~~~~~~-~~~v~~~~~spdg-~l~s~~~d-----g~i~iwd~~~g~ 431 (434)
.+ ..+.+||..+.+ .+..+.. ......+.+ ++ .++.|+.+ ..|.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 42 238888887643 2222221 111122222 55 66666654 478888887653
No 393
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.31 E-value=2.6 Score=39.63 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=127.6
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC---------------
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------------- 192 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--------------- 192 (434)
.+.+.++|+.++ +. ..+......+....|||+|+.++-.. ++.|.+++..+++..+.-..+.
T Consensus 22 ~~~y~i~d~~~~-~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETG-EI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTT-EE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCC-ce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 356899999996 43 33433367889999999999998886 4679999998885443332221
Q ss_pred -----ceEEEEeCCCEEEEE--cCCcEEEEECCCCceEEecCCC---CcEEEEEEeCCEEEEEeCCC--cEEEEEcCCCC
Q 013881 193 -----EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPV---GQVYAMAVGNDLLFAGTQDG--AILAWKFNVTT 260 (434)
Q Consensus 193 -----~~~~~~~~~~~l~~~--~~~~i~~w~~~~~~~~~~~~~~---~~v~~l~~~~~~l~~g~~dg--~i~vwd~~~~~ 260 (434)
.....+++++.|+.. .+..|..+.+. ...... ..+..+.+- ..|..+- .+.++|+.+++
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP-----DYSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDLASGK 169 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE-----EESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTC
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEee-----ccCCccccCCcccccccC----CCCCcCCceEEEEEECCCCc
Confidence 111223345544432 12222222110 011111 123333321 1122222 35567776653
Q ss_pred Cc-cccceeecCccceEEEEEEC--CCEEEEe--cCC---CcEEEEeCCCCeEEEEEcc-ccccE---EEEEE---c-CC
Q 013881 261 NC-FEPAASLKGHSLAVVSLVVG--ANKLYSG--SMD---NSIRVWNLETLQCIQTLTE-HTSVV---MSLLC---W-DQ 324 (434)
Q Consensus 261 ~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~--s~d---g~i~vwd~~~~~~~~~~~~-~~~~v---~~l~~---~-~~ 324 (434)
.. ......+.....-+..+.|. ++.|+.. ..+ -.+.+.|..++++...+.. ....| ....+ . ..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 21 01111112334556777774 3324433 222 2466678776654333322 11221 12222 2 34
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC----eEEEEeCC-CCccccccccc
Q 013881 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN----SVRFYDLP-SFAERGKIFAK 399 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~-~~~~~~~~~~~ 399 (434)
+|.....||.-.||-+........... ...-.|..+... +..++.+.+++..++ .|+.-++. .++. ..+...
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT-~G~~~V~~i~~~-d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~ 326 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLT-SGDWEVTSILGW-DEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCE 326 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS--SSS-EEEEEEE-ECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTT
T ss_pred EEEEEEcCCCcEEEEEcccccceeccc-cCceeecccceE-cCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCC
Confidence 566666777766665544433322222 222234332222 133444666666533 56666677 4333 333322
Q ss_pred CcE-EEEEecCCc-EE-EEeC
Q 013881 400 QEI-RAIQLGPGG-LF-FTGD 417 (434)
Q Consensus 400 ~~v-~~~~~spdg-~l-~s~~ 417 (434)
... ..+.|||++ ++ .+.+
T Consensus 327 ~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCceEEEECCCCCEEEEEEc
Confidence 222 689999999 44 4443
No 394
>PHA02790 Kelch-like protein; Provisional
Probab=95.15 E-value=1.9 Score=42.37 Aligned_cols=177 Identities=11% Similarity=0.081 Sum_probs=88.0
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCceEEEEecCCc---eEEEEeCCCEEEEEcC---CcEEEEECCCCceEEecC--
Q 013881 161 GSDKLYSGSKDE-----TVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGVT---NFVKAWNTQTNTDLSLSG-- 227 (434)
Q Consensus 161 ~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~---~~i~~w~~~~~~~~~~~~-- 227 (434)
++.+++.|+.++ ++..||..+.+-...-....+ ......++.+.++|.. ..+..||..++.......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 445566676543 467788877654333222211 1222345555455432 367888887765543322
Q ss_pred -CCCcEEEEEEeCCEEEEEeCCC---cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC
Q 013881 228 -PVGQVYAMAVGNDLLFAGTQDG---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 228 -~~~~v~~l~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 303 (434)
.............+.+.|+.++ .+..||..+.. +.....+............++...+.| |.+.+||.++.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC
Confidence 1222233344444666666553 46778876542 232222222222223344555555555 35778998765
Q ss_pred eEE--EEEccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCC
Q 013881 304 QCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATD 342 (434)
Q Consensus 304 ~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~ 342 (434)
+-. ..+.........+...++..+.|+.+ ..+..||..+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 432 22222223334444556777777654 2355555443
No 395
>PHA03098 kelch-like protein; Provisional
Probab=95.14 E-value=2.7 Score=42.02 Aligned_cols=172 Identities=12% Similarity=0.142 Sum_probs=78.1
Q ss_pred EEEEECCCCceEEecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEcCCCCCccccceeecCccceEEEEEECC
Q 013881 212 VKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283 (434)
Q Consensus 212 i~~w~~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 283 (434)
+..||..+.+...+.. .......+.....+++.|+.+ ..+..||..+.. +.....+............++
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--WREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--eeeCCCcCcCCccceEEEECC
Confidence 4455555554432221 112222333333466666655 346677766542 222222221122222334456
Q ss_pred CEEEEecCC------CcEEEEeCCCCeEEE--EEccccccEEEEEEcCCEEEEEeCC--------CcEEEEEcCCCCceE
Q 013881 284 NKLYSGSMD------NSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLD--------KTIKVWFATDSGNLE 347 (434)
Q Consensus 284 ~~l~s~s~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~ 347 (434)
...+.|+.+ ..+..||+.+.+-.. .+........++...+..++.|+.+ ..+.+||..+.+-..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 666666632 458889988754322 1111111122333445555666543 237888877653221
Q ss_pred EEeeecCCccEEEEEeccCCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 013881 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSF 390 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 390 (434)
. ...........++.. ++.+++.|+.+ +.|.+||..+.
T Consensus 471 ~-~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 471 L-SSLNFPRINASLCIF----NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred C-CCCCcccccceEEEE----CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 1 111111111111111 23366667653 46788887764
No 396
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.77 E-value=4.3 Score=40.94 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=89.2
Q ss_pred CccccEEEEEccCCCCEEEEEE------CCC--cEEEEECCCCceEEEEecCCceE--EEEeCCCEEEEEcC--------
Q 013881 148 GHQKVVSGITLPSGSDKLYSGS------KDE--TVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGVT-------- 209 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s------~dg--~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-------- 209 (434)
+....+...+++|+++.++..- .|. .|.+++.. +.. ..+....... .+.+++..+....+
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3335788999999999887665 244 45555542 222 2222222221 22234444443322
Q ss_pred -----CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc---CCCCCccccceeec-CccceEEE
Q 013881 210 -----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF---NVTTNCFEPAASLK-GHSLAVVS 278 (434)
Q Consensus 210 -----~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~---~~~~~~~~~~~~~~-~h~~~v~~ 278 (434)
+.+.+..++.++... .....|..+.|++| .++... ++.|++--+ ..+.........+. .-...+.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444333322 33567999999999 333332 477777332 22211111111222 22333577
Q ss_pred EEECC-CEEEEecCCCcEEEEeCCC-CeEEEEEcc--ccccEEEEEEcCCEEEEEeCCCcEE
Q 013881 279 LVVGA-NKLYSGSMDNSIRVWNLET-LQCIQTLTE--HTSVVMSLLCWDQFLLSCSLDKTIK 336 (434)
Q Consensus 279 l~~~~-~~l~s~s~dg~i~vwd~~~-~~~~~~~~~--~~~~v~~l~~~~~~l~s~s~dg~i~ 336 (434)
+.|.+ ..|+.+..++...+|.+.- +.....+.. ....+.+++-....++....++.+.
T Consensus 502 l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence 88853 4466665555444554322 222112222 2556666666655566555555333
No 397
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.59 E-value=3.4 Score=39.75 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=93.0
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCC---E--EEEEeCC-CcEEEEEcCCCCCccccceeecCccceEEEEEECCC
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---L--LFAGTQD-GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN 284 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~--l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 284 (434)
.+.+-|.+......+......+..-.|+++ + +..-... ..+.++++..+.. ..+..+.++ .....++++++
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~~~~g~-~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVILNFNGN-NGAPAFSPDGS 250 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--ceeeccCCc-cCCccCCCCCC
Confidence 344444443333345555556666777777 2 2222222 4699999988743 223333332 23344555666
Q ss_pred E-EEEecCCCc--EEEEeCCCCeEEEEEccccccE--EEEEEcCCEEEEEe-CCCcEEE--EEcCCCCceEEEeeecCCc
Q 013881 285 K-LYSGSMDNS--IRVWNLETLQCIQTLTEHTSVV--MSLLCWDQFLLSCS-LDKTIKV--WFATDSGNLEVTYTHNEEH 356 (434)
Q Consensus 285 ~-l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v--~~l~~~~~~l~s~s-~dg~i~v--wd~~~~~~~~~~~~~~~~~ 356 (434)
+ +++...||. |++.|+..++..+ +....+.- .++..+|++++-.+ ..|.-.| +++..............
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-- 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-- 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--
Confidence 5 556666765 6666877766333 43322222 23333466665554 4555444 45544433222222221
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCe--EEEEeCCCCcccccccccCcEEEEEecCCc
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNS--VRFYDLPSFAERGKIFAKQEIRAIQLGPGG 411 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~spdg 411 (434)
.. .-.++|++ ..+++....+|. |.+.|+.++.....+........-.|.+++
T Consensus 328 ~~-~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 328 NS-NPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG 381 (425)
T ss_pred Cc-CccCCCCC--CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence 11 33344433 334444433455 677777666543333333333334455555
No 398
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.58 E-value=4.9 Score=39.17 Aligned_cols=310 Identities=14% Similarity=0.132 Sum_probs=142.9
Q ss_pred cccceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 108 IKTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 108 ~~~~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
...+|..+.+ ..+.+..|+.|| +..+|..++ +.++.-.... .+|..+..+-.++ |..|+.+| |.+.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~g-kalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRG-KALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccc-eEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 3446777777 456677777777 556787777 5555444433 7787777766655 77788877 788776652211
Q ss_pred EEEe--cCCceEEEEe--CCCEEEEEcCCcEEEEECCCCceEEe-c--CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcC
Q 013881 186 GVIN--LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSL-S--GPVGQVYAMAVGND-LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 186 ~~~~--~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~-~--~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~ 257 (434)
.... ....+..+.. .+.+-+.+..|..+.--.+.+-.... . .....|.++..+.+ .|-+++.++.+++-+-.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 1100 1112222222 22222222223222222222222211 1 12345556666555 77788887776664432
Q ss_pred CCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc-CCEEEEEeCCC
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW-DQFLLSCSLDK 333 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~s~s~dg 333 (434)
-... ..+....+-...-...++. ...+--...-|.+.+-+-.++..++.... -...|+.+.+. ...+-.++...
T Consensus 319 w~~m--a~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~ 396 (671)
T COG3292 319 WKRM--AVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQN 396 (671)
T ss_pred hhhe--eeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEeccc
Confidence 1100 0111111111111111110 11111122223344444445554444222 12334444444 55666777765
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc------ccCcEEEEEe
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF------AKQEIRAIQL 407 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~ 407 (434)
-+..|+..+...............+.++- ++..+. |..|+.+|.++. +.+.++....+. ..+.|..+.+
T Consensus 397 GLsrl~n~n~~avlde~agl~ss~V~aiv--ed~dns--LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~ 471 (671)
T COG3292 397 GLSRLDNKNEWAVLDEDAGLPSSEVSAIV--EDPDNS--LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGL 471 (671)
T ss_pred chhhhccCCcccccccccCCcccceeeee--ecCCCC--EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhcc
Confidence 66667655522221111111222344433 333332 778888887654 223322222221 2455788899
Q ss_pred cCCcEEEEeCCCCCEEEEEccC
Q 013881 408 GPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 408 spdg~l~s~~~dg~i~iwd~~~ 429 (434)
.|+|.|-.++.+| |..|+-+.
T Consensus 472 ~~~g~Lw~a~g~g-va~~~sq~ 492 (671)
T COG3292 472 GPDGRLWLAAGSG-VAAWESQR 492 (671)
T ss_pred CCCCceEEEecce-eeeecccc
Confidence 9999333333343 46665443
No 399
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.56 E-value=2 Score=41.27 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=101.9
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE---CC-CcEEEEECCCCceEEEEecC--CceEEEEeCCCE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS---KD-ETVRVWDCASGQCAGVINLG--GEVGCMISEGPW 203 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 203 (434)
.+.+=|.+ + .....+..-...+..-+|+|+++.++-.+ .. ..+.++|+.+++........ .....+.++++.
T Consensus 174 ~l~~~D~d-g-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-G-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-C-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence 44444444 4 44445554556777788999998766542 22 46999999998766665543 344555677777
Q ss_pred EEEEc--CC--cEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE
Q 013881 204 IFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 204 l~~~~--~~--~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
|+... ++ .|.+.|+.++....+..-.+.-..=.|+|+ ++++.+..|.-.||-+...... ....+........
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcC
Confidence 77654 33 678888888886665554444446677787 6777777777555554443221 1122222222234
Q ss_pred EEEEECCCEEEEecC-CCc--EEEEeCCCCe
Q 013881 277 VSLVVGANKLYSGSM-DNS--IRVWNLETLQ 304 (434)
Q Consensus 277 ~~l~~~~~~l~s~s~-dg~--i~vwd~~~~~ 304 (434)
..+..++++++..+. +|. |.+.|+.++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 445556777665543 344 5555655544
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.46 E-value=1.2 Score=44.55 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC---------CCccc
Q 013881 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP---------SFAER 393 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~ 393 (434)
++.-++-+....+.|||.+... ++..........|..+.|...+++..+|++ +....|.+|--. +...+
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDGQSILAV-GFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCCCEEEEE-EcCcEEEEEEccchhhhcCCccccee
Confidence 3444444456689999997665 333334445567888988887766655555 467788887542 12222
Q ss_pred cccc---c-cCcEEEEEecCCcEEEEeCCCCCEEEEE
Q 013881 394 GKIF---A-KQEIRAIQLGPGGLFFTGDGTGQVRVWQ 426 (434)
Q Consensus 394 ~~~~---~-~~~v~~~~~spdg~l~s~~~dg~i~iwd 426 (434)
.++. + ..+|.+..|.++|.|++|+. ..+.|++
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~d 154 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFD 154 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEEC
Confidence 2221 2 46899999999996655554 3466665
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.42 E-value=2.9 Score=35.89 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=104.7
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCC---CEEEEEECCCcEEEEECC--CCceEEEEe-cC--C-----ce
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCA--SGQCAGVIN-LG--G-----EV 194 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~--~~~~~~~~~-~~--~-----~~ 194 (434)
.+.|.-||..+..-.-.++++. ++.++.|.-.+ .+.+.++.--.|--||-. .-...+++. .+ . .-
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 3456669988763333444433 24444443222 334444444445557733 223333311 11 0 01
Q ss_pred EEEEeCCCEEEEEc----------CCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCC
Q 013881 195 GCMISEGPWIFIGV----------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 195 ~~~~~~~~~l~~~~----------~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.-+.+++++..... .+.++.|-....... +.....--..++|+.+ +.++-+.+-+|.-||.+..+.
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~-i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL-IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCcee-eehhccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 12234555533222 234444443332222 1222233356788766 667778888898888543321
Q ss_pred c---cccceeecC-----c-cceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCC
Q 013881 262 C---FEPAASLKG-----H-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ 324 (434)
Q Consensus 262 ~---~~~~~~~~~-----h-~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 324 (434)
. .+.+..++. + ...-.++.-+|++.++.-..++|...|+.+|+.+.+++-....|++++|-|.
T Consensus 193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 1 111222211 1 1112344446788888888899999999999999999999999999999854
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=94.30 E-value=4.3 Score=39.98 Aligned_cols=128 Identities=11% Similarity=0.041 Sum_probs=65.2
Q ss_pred cEEEEECCCCceEEecC---CCCcEEEEEEeCCEEEEEeCC--CcEEEEEcCCCCCccccceeecCccceEEEEEECCCE
Q 013881 211 FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD--GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK 285 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 285 (434)
.+..||..++....+.. .......+.....+.++|+.+ ..+..||...+ .+.....+............++..
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEE
Confidence 56678888876553322 122222333444466666654 35777876543 233333333222233444556777
Q ss_pred EEEecCCC---cEEEEeCCCCeEEE--EEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCC
Q 013881 286 LYSGSMDN---SIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 286 l~s~s~dg---~i~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 343 (434)
.+.|+.++ .+..||.++.+-.. .+.........+.+.+...+.| |.+.+||..+.
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC
Confidence 77777553 47788887654322 1111111222333345455555 35778887654
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.22 E-value=3.2 Score=42.10 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=51.2
Q ss_pred cccEEEEEEc----CCEEEEEeCCCcEEEEEcCCC-CceEEEeeecCCccEEEEEeccCCCCCc---EEEEEeCCCeEEE
Q 013881 313 TSVVMSLLCW----DQFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVRF 384 (434)
Q Consensus 313 ~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~i 384 (434)
......+++. .++||+++....|.||-.... ........+.....|.+++|.++..+.. .|++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3466777776 567888888888888865542 1111112334556788999988774433 7888889999999
Q ss_pred EeC
Q 013881 385 YDL 387 (434)
Q Consensus 385 wd~ 387 (434)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 888
No 404
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.04 E-value=5.3 Score=37.41 Aligned_cols=251 Identities=14% Similarity=0.054 Sum_probs=114.0
Q ss_pred CCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEE---E-E-eCC
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC---M-I-SEG 201 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~---~-~-~~~ 201 (434)
...+++-|+.++ +. .+|..+. .......++++.+.|+-......|+--|+++.+....+..+..... . . .+.
T Consensus 59 ~~nly~lDL~t~-~i-~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 59 NRNLYLLDLATG-EI-TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC 136 (386)
T ss_dssp S-EEEEEETTT--EE-EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS
T ss_pred CcceEEEEcccC-EE-EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc
Confidence 347888888886 44 4444332 2233466678888887766667899999999987766666554332 1 1 244
Q ss_pred CEEEEEc-----------------------CCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeC---CCc-E
Q 013881 202 PWIFIGV-----------------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ---DGA-I 251 (434)
Q Consensus 202 ~~l~~~~-----------------------~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~---dg~-i 251 (434)
..++... ...|...|+.+++...+......+..+.|+|. +|.-+-+ +.. -
T Consensus 137 t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~ 216 (386)
T PF14583_consen 137 TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQ 216 (386)
T ss_dssp SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-
T ss_pred cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceece
Confidence 4443310 12567778888888777777788889999988 4444332 221 3
Q ss_pred EEEEcCCCCCccccceeecCccceEE-EEEE--CCCEEE-----EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-
Q 013881 252 LAWKFNVTTNCFEPAASLKGHSLAVV-SLVV--GANKLY-----SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~-----s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~- 322 (434)
+||-+++.....+++..-. ...+. .=-| +|..+. -++.+..|.-+|+.+++....... . ...-+..+
T Consensus 217 RiW~i~~dg~~~~~v~~~~--~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p-~~~H~~ss~ 292 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHRRM--EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-P-WCSHFMSSP 292 (386)
T ss_dssp SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-T
T ss_pred EEEEEEcCCCcceeeecCC--CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-C-ceeeeEEcC
Confidence 6677665543333332221 12222 2222 454322 123355677788888765432221 1 12222222
Q ss_pred -CCEEEEEeCCC----------------cEEEEEcCCCCceEEEeeecC---------CccEEEEEeccCCCCCcEEEEE
Q 013881 323 -DQFLLSCSLDK----------------TIKVWFATDSGNLEVTYTHNE---------EHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 323 -~~~l~s~s~dg----------------~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
+++++-=+.|. .|+++++..... ..+..|.. ...-.-..|+|+ ++.+|..+
T Consensus 293 Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPD--gk~VlF~S 369 (386)
T PF14583_consen 293 DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPD--GKWVLFRS 369 (386)
T ss_dssp TSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------BTTBSSTT----EE-TT--SSEEEEEE
T ss_pred CCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceeecCCCccCCCCCccCCC--CCEEEEEC
Confidence 34443323321 456677754432 22222210 111233455555 44567777
Q ss_pred eCCCeEEEEeC
Q 013881 377 CNDNSVRFYDL 387 (434)
Q Consensus 377 ~~dg~i~iwd~ 387 (434)
...|...||-+
T Consensus 370 d~~G~~~vY~v 380 (386)
T PF14583_consen 370 DMEGPPAVYLV 380 (386)
T ss_dssp -TTSS-EEEEE
T ss_pred CCCCCccEEEE
Confidence 77787766643
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.02 E-value=0.88 Score=43.39 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=83.3
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-------CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccE
Q 013881 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 358 (434)
+..|.....++-.|++.|+.+..+..|...+...... +..-++|-.+..|.-.|.+-.+..........-..-
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4566677788888999999999998887764332221 233445555666666676655422222211111111
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
..+........+ ++++++..|-|++||--.-.....+.. ...|..+..+.+| .+++.+. ..|.+-|+.
T Consensus 563 n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 111111112222 899999999999999765444444443 6789999999999 4444433 356665543
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.91 E-value=3.2 Score=42.12 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----------------CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 323 DQFLLSCSLDKTIKVWFATDS-----------------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
.+.|+.+..||.|.+|.+++- ..+...........++.++++. .+..++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~-~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHD-YKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEe-cCcceEEEEecCCceEEEE
Confidence 468999999999999965210 0011122223334677777762 1344589999888888887
Q ss_pred eCCCCccc----ccccccCcEEEEEecCC-----c--EEEEeCCCCCEEEEEc
Q 013881 386 DLPSFAER----GKIFAKQEIRAIQLGPG-----G--LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 386 d~~~~~~~----~~~~~~~~v~~~~~spd-----g--~l~s~~~dg~i~iwd~ 427 (434)
-....... ....+...|-+|+|-++ | .|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66542111 12235667888888653 4 6778899999999888
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.86 E-value=4.2 Score=42.49 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=106.9
Q ss_pred eEEEEeCCCCceEEEEecCc----cccEEEEEccCCCC--EEEEEEC-----------CCcEEEEECC-CCc---eEEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGH----QKVVSGITLPSGSD--KLYSGSK-----------DETVRVWDCA-SGQ---CAGVI 188 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h----~~~V~~l~~s~~~~--~l~s~s~-----------dg~v~iwd~~-~~~---~~~~~ 188 (434)
.|++.|..++ +.+..+.-. .-.|.++.|+.... +++.+.. +|.++.|++- .++ .++..
T Consensus 854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 4778887776 444443311 12466667754332 3343332 3446666543 333 44455
Q ss_pred ecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE---EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~---~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
.....+.++.+....+.++....+++|++-..+.+ .+..-...|..+.+....+++|...-.+.++..+...+.
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~--- 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ--- 1009 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe---
Confidence 55677888888777999999999999999887765 223346788999999999999988888888777665432
Q ss_pred ceeecC--ccceEEEEEE-CCCEEEEecCCCcEEEEeCC
Q 013881 266 AASLKG--HSLAVVSLVV-GANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 266 ~~~~~~--h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~ 301 (434)
...+.. -...|+++.+ +-+.++.+..-|.+.+-.+.
T Consensus 1010 l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 222222 2233455444 66778888877877776553
No 408
>PRK10115 protease 2; Provisional
Probab=93.72 E-value=9.7 Score=39.37 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=108.2
Q ss_pred ccEEEEEccCCCCEEEEEECC-----CcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEe
Q 013881 151 KVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~ 225 (434)
-.+..+.++||+++|+-+... ..|++-|+.+++.+.. .+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------------------------~i 170 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------------------------LL 170 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------------------------cc
Confidence 456678889999988765332 2466666665542211 01
Q ss_pred cCCCCcEEEEEEeCC---EEEEEeCC-----CcEEEEEcCCCCCccccceeecCccceEEEEEE-CCCEEEEec---CCC
Q 013881 226 SGPVGQVYAMAVGND---LLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGS---MDN 293 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~---~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s---~dg 293 (434)
.. . . ..++|.++ ++++...+ ..|+.+++.+....-..+..-......+..... ++.+++..+ .++
T Consensus 171 ~~-~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 247 (686)
T PRK10115 171 DN-V-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTS 247 (686)
T ss_pred cC-c-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccc
Confidence 11 1 1 34677655 33333322 357777776653211222221112122222222 455544332 346
Q ss_pred cEEEEeCC--CCeEEEEEccccccEEEEEEcCCEEEEEeCC--C--cEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 294 SIRVWNLE--TLQCIQTLTEHTSVVMSLLCWDQFLLSCSLD--K--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 294 ~i~vwd~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
.+.+++.. +++....+.........+...++.|..-+.. . .|...++.+......+........+..+.+.
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--- 324 (686)
T PRK10115 248 EVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--- 324 (686)
T ss_pred cEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE---
Confidence 78888843 3332222222222223333234444443332 2 3433444432333444444333355566554
Q ss_pred CCCcEEEEEeCCCeEEEEeCCC-Cccccccc--ccCcEEEEEec--CCc--EEEEeC---CCCCEEEEEccCCc
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPS-FAERGKIF--AKQEIRAIQLG--PGG--LFFTGD---GTGQVRVWQWCNGP 431 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~v~~~~~s--pdg--~l~s~~---~dg~i~iwd~~~g~ 431 (434)
...++++...++.-+++-+.. +..+..+. ....+..+.++ +++ .+++.+ .-+.+..+|+.+++
T Consensus 325 -~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 325 -TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 224677777777655554432 22223222 12223333444 333 333332 45678888887664
No 409
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=6.7 Score=37.31 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=112.4
Q ss_pred EEEEEeCC---EEEEEeCCCcEEEEEcCCCCCcccccee-ecCccceEEEEEECCCEEEEecC---CCcEEEEeCCCCeE
Q 013881 233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKGHSLAVVSLVVGANKLYSGSM---DNSIRVWNLETLQC 305 (434)
Q Consensus 233 ~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~l~s~s~---dg~i~vwd~~~~~~ 305 (434)
..+..++. ..+....++.|.+.|..... .... ..+....-..+.++++.++.+.. ++++.+.|..+.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~----~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT----VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccc----eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 34555554 45555556889999966542 2222 22222222334445666655544 78999999999998
Q ss_pred EEEEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceEEEe---eecCCccEEEEEeccCCCCCcEEEEEeC-
Q 013881 306 IQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTY---THNEEHGVLALCGMPDSEGKPVLLCSCN- 378 (434)
Q Consensus 306 ~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 378 (434)
+........+ ..++++ ++.++.. ..++.|.+.|........ -. .......-..+.+.++.. +..++-..
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~--~~yV~~~~~ 228 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGN--RVYVANDGS 228 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCC--EEEEEeccC
Confidence 8886554444 566666 6655544 478999999966543332 11 011111223344444443 22222222
Q ss_pred -CCeEEEEeCCCCcccccc-cccC-cEEEEEecCCc-EEEEe-CCCCCEEEEEccCCcc
Q 013881 379 -DNSVRFYDLPSFAERGKI-FAKQ-EIRAIQLGPGG-LFFTG-DGTGQVRVWQWCNGPV 432 (434)
Q Consensus 379 -dg~i~iwd~~~~~~~~~~-~~~~-~v~~~~~spdg-~l~s~-~~dg~i~iwd~~~g~~ 432 (434)
++.+...|..++...... .... ....+.++|+| .+.+. ...+.+.+-|..+..+
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 268999999887766652 2222 56778999999 55555 4558888888877654
No 410
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=6.9 Score=37.20 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred EEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCCCceEEEEecC-C--ceEEEEeCCCEEEE
Q 013881 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG-G--EVGCMISEGPWIFI 206 (434)
Q Consensus 131 i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~ 206 (434)
+.+++..+. +....+.-+. ....+...+++..++... ....+.+-+............. . .-..+...+..+++
T Consensus 13 ~~v~~~~~~-~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTN-KVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeeccc-EEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 566666654 4444444333 555677788885544433 2224555555422222222222 1 11233345554555
Q ss_pred Ec--CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 207 GV--TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 207 ~~--~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
.. ++.|.+.|..+........-......++++++ .+.++.. ++.+.+.|..+. ........-..+ ..+
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-TGV 165 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-ceE
Confidence 43 68999999877776643333336667778776 4444433 688888887776 333333222223 455
Q ss_pred EE--CCCEEEE-ecCCCcEEEEeCCCCeEEE-----EEccccc-cEEEEEEcCCEEEEEeCC---CcEEEEEcCCCCceE
Q 013881 280 VV--GANKLYS-GSMDNSIRVWNLETLQCIQ-----TLTEHTS-VVMSLLCWDQFLLSCSLD---KTIKVWFATDSGNLE 347 (434)
Q Consensus 280 ~~--~~~~l~s-~s~dg~i~vwd~~~~~~~~-----~~~~~~~-~v~~l~~~~~~l~s~s~d---g~i~vwd~~~~~~~~ 347 (434)
++ +++.++. -..++.|.+.|.......+ ....... ....+..++.++.+.... +.+...|..+.....
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 55 4665544 4578999999987766553 1212222 223334446654444333 588888887765544
Q ss_pred EEeeecCCccEEEEEeccCCCCCcEEEEE-eCCCeEEEEeCCCCccccccc
Q 013881 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSFAERGKIF 397 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 397 (434)
........ ....+...|.+. .+.+. +..+.+.+.|..+........
T Consensus 246 ~~~~~~~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 246 TDLPVGSG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eccccccC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCceeeeec
Confidence 42222221 233445554443 55555 445889999988876665543
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.46 E-value=0.4 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.5
Q ss_pred ccEEEEEccCCC---CEEEEEECCCcEEEEECCCC
Q 013881 151 KVVSGITLPSGS---DKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 151 ~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~~ 182 (434)
++|.++.|+|+. ++|+-+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 58888888899999999853
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.04 E-value=8.9 Score=38.71 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=88.4
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC------------CcEEEEECCCCceEEEEecCCceEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------------ETVRVWDCASGQCAGVINLGGEVGCM 197 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (434)
.|.+++.... ......+. ..+.-.|+|||+.|++.+.. +.+.+.++..++... .....+..+
T Consensus 380 ~Lwv~~~gg~--~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl 453 (591)
T PRK13616 380 SLWVGPLGGV--AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISEL 453 (591)
T ss_pred EEEEEeCCCc--ceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeE
Confidence 5666665332 22223333 37888999999988877533 233333444433322 223334444
Q ss_pred --EeCCCEEEEEcCCcEEE---EECCCCceE-----Eec-CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 198 --ISEGPWIFIGVTNFVKA---WNTQTNTDL-----SLS-GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 198 --~~~~~~l~~~~~~~i~~---w~~~~~~~~-----~~~-~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
+.++..++...++.|.+ -....+... .+. .....+.++.|.++ .|+++..++...+|.+........
T Consensus 454 ~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~- 532 (591)
T PRK13616 454 QLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD- 532 (591)
T ss_pred EECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc-
Confidence 45888777766777776 444445421 122 23334688999888 566666666556666554322111
Q ss_pred ceeecCccceEEEEEECCCEEEEecCCCcEEE
Q 013881 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRV 297 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 297 (434)
...-.....++.+++-++..++....++.+.+
T Consensus 533 ~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 533 ALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 10111135667777777777777777775444
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=3.5 Score=36.53 Aligned_cols=189 Identities=11% Similarity=0.129 Sum_probs=100.5
Q ss_pred CcEEEecC------CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE-ECCCCceEEEEecCC
Q 013881 120 GNCMYGEK------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW-DCASGQCAGVINLGG 192 (434)
Q Consensus 120 ~~~~~g~~------d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~~~~ 192 (434)
+.+++++. -|.|-|||...+++.+-++..|.-.-..+.+.+||+.|+.+. |-|..- |... ....+..
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR--~~lNlds-- 198 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGR--TELNLDS-- 198 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCc--cccchhh--
Confidence 34555553 368999999999999999999988888999999999988764 334433 2111 0000000
Q ss_pred ceEEEEeCCCEEEEEcCCcEEEEECCCCceE---Eec--CCCCcEEEEEEeCC-EEEEEeC-----------------CC
Q 013881 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLS--GPVGQVYAMAVGND-LLFAGTQ-----------------DG 249 (434)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~---~~~--~~~~~v~~l~~~~~-~l~~g~~-----------------dg 249 (434)
..-.+.+.|..++..+ ++. .+.-.|..+...++ .+..|++ .+
T Consensus 199 ---------------MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 199 ---------------MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ---------------cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 0111223333333322 121 23334555555444 2222221 11
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEE
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFL 326 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l 326 (434)
.+...++... ........|-+++.+ ..+++ +.-..+...+||..++..+..-.- .....+.....-+
T Consensus 264 ~l~~~~~pee--------~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~~gf 333 (366)
T COG3490 264 PLEFLDLPEE--------QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAKGGF 333 (366)
T ss_pred cCcccCCCHH--------HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceeccCce
Confidence 2222222111 011122345566665 33444 444556778999999988754322 1223444455667
Q ss_pred EEEeCCCcEEEEE
Q 013881 327 LSCSLDKTIKVWF 339 (434)
Q Consensus 327 ~s~s~dg~i~vwd 339 (434)
++.+.+|.+.++.
T Consensus 334 ~vssg~G~~~~~s 346 (366)
T COG3490 334 AVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCceEEecc
Confidence 7777888888874
No 414
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=92.31 E-value=0.041 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.790 Sum_probs=16.4
Q ss_pred cceeeeecc-CccCCCC-CCccccc
Q 013881 35 QKVCNYWRA-GKCNRFP-CPYLHRE 57 (434)
Q Consensus 35 ~~~~~~~~~-~~~~~~~-c~~l~~~ 57 (434)
.+.|.+|.+ |.|.+-. |+|.|.+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred cccChhhccCCccCCCCCcCccCCC
Confidence 468999999 9999955 9999863
No 415
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.28 E-value=8.1 Score=37.32 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCC-------CCceEEEEe-cCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVG-------DGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~-------~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
...+.-+...+.+....|..++||+.. ++ .....+ .++...+.++ ++.-...|.|+.|+--+
T Consensus 28 ~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~-~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~ 97 (422)
T PF08801_consen 28 PCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDG-SDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESIS 97 (422)
T ss_dssp S-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--E-EEEE-----------SE--------EEEE-TT-EEEEES-TT
T ss_pred ceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcc-cccceecCCCCCCCceE--------EEEEcCCCCEEecccch
Confidence 455556666778888889999999983 33 333334 4455555444 44556678888987543
No 416
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.19 E-value=3 Score=41.89 Aligned_cols=106 Identities=8% Similarity=0.137 Sum_probs=62.3
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE-eCCCEEEEEcCCcEEEEECCCCceEEe---
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDLSL--- 225 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~i~~w~~~~~~~~~~--- 225 (434)
...++++.-+|.++-+++++.||.|++++.......+......+...+. .+..++++.+|..+..|.-..-.+..+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqfdyn 93 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQFDYN 93 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccCcchhhcccc
Confidence 4567788888999999999999999999987765544444333333333 344555666677777776544222111
Q ss_pred cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEE
Q 013881 226 SGPVGQVYAMAVGND-LLFAGTQDGAILAWK 255 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd 255 (434)
........++...|. .-++|+.-|-|.-+|
T Consensus 94 dqsekefss~~cdptaqnvvgtlcggv~q~d 124 (1636)
T KOG3616|consen 94 DQSEKEFSSILCDPTAQNVVGTLCGGVEQFD 124 (1636)
T ss_pred chhhhhccceecCchhhhhhhhhccceeeeh
Confidence 112233444444454 334444444454444
No 417
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.99 E-value=11 Score=35.41 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=49.9
Q ss_pred eCCCCceEEEEecCccccEEEEE-----ccCCCCEEEEEEC-CC--cEEEEECCCCceEEEEecCCc---eEEEEeCCCE
Q 013881 135 TVGDGFKLLTQLEGHQKVVSGIT-----LPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGE---VGCMISEGPW 203 (434)
Q Consensus 135 d~~~~~~~~~~l~~h~~~V~~l~-----~s~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~ 203 (434)
|..+| ..+..|..+...-..+- |.+||+.|+-++. || .+.+-|+.+++..+.-..... -.++.++++.
T Consensus 16 D~~TG-~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 16 DPDTG-HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp -TTT---EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred CCCCC-ceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 56677 56666664444333343 5678876665554 54 677779999988776665422 3455666666
Q ss_pred EE-EEcCCcEEEEECCCCceE-EecCCCCcEEEEEE
Q 013881 204 IF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV 237 (434)
Q Consensus 204 l~-~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~ 237 (434)
++ +.....|...|+++.+.. ....+...+-...|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence 65 455678999999998875 33334444433444
No 418
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.70 E-value=11 Score=34.85 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=51.2
Q ss_pred EEEECCCEEEEecCC-----CcEEEEeCCCCeE---EEEEcccc---ccEEEEEEcCCEEEEEeC-----CCcEEEEEcC
Q 013881 278 SLVVGANKLYSGSMD-----NSIRVWNLETLQC---IQTLTEHT---SVVMSLLCWDQFLLSCSL-----DKTIKVWFAT 341 (434)
Q Consensus 278 ~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~---~~~~~~~~---~~v~~l~~~~~~l~s~s~-----dg~i~vwd~~ 341 (434)
.+..++..++.|+.+ ..+..+|+.+.+- ...+..-. ....+....+...+.|+. ...+..||+.
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC
Confidence 344556666667654 3577778776553 12222111 112223334556666664 2457888877
Q ss_pred CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC----eEEEEeCCCCc
Q 013881 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN----SVRFYDLPSFA 391 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~ 391 (434)
+.+-.. +............+... ++++.+.|+.++ .+.+||..+.+
T Consensus 148 ~~~W~~-~~~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 148 TQEWFE-LPDFPGEPRVQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCeeE-CCCCCCCCCCcceEEEE---CCEEEEEcCCCCccccceEEEecCCCe
Confidence 654221 11111100111111111 233677777653 35678887643
No 419
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.65 E-value=13 Score=35.69 Aligned_cols=225 Identities=13% Similarity=0.134 Sum_probs=109.0
Q ss_pred CCCeEEEEeCCCCceEEE-EecCccccEEEEEccCCCCEEEEEECCC-----------cEEEEECCCCceEEEEecCCce
Q 013881 127 KCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDE-----------TVRVWDCASGQCAGVINLGGEV 194 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~s~s~dg-----------~v~iwd~~~~~~~~~~~~~~~~ 194 (434)
....|++.|+.++ +.+. .+..- .-..+.|.++++.|+-...+. .|+.|.+.+......
T Consensus 148 e~~~l~v~Dl~tg-~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~------- 217 (414)
T PF02897_consen 148 EWYTLRVFDLETG-KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE------- 217 (414)
T ss_dssp SEEEEEEEETTTT-EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-------
T ss_pred ceEEEEEEECCCC-cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCe-------
Confidence 3347999999999 5544 33322 122399999988877665443 256666655432100
Q ss_pred EEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCC-C-cEEEEEEeCC--E-EEEEeCC---CcEEEEEcCCCCCccccc
Q 013881 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV-G-QVYAMAVGND--L-LFAGTQD---GAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 195 ~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~-~-~v~~l~~~~~--~-l~~g~~d---g~i~vwd~~~~~~~~~~~ 266 (434)
+.+.... . ....+..+++ + ++..... ..+.+.++..........
T Consensus 218 ----------------------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 218 ----------------------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp ----------------------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred ----------------------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 1122212 1 2456666666 3 3333322 347777776631000122
Q ss_pred eeecCc-cceEEEEEECCCEEEEec----CCCcEEEEeCCCCeE---EEEEccccc--cEEEEEEcCCEEEEEeC-CC--
Q 013881 267 ASLKGH-SLAVVSLVVGANKLYSGS----MDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCWDQFLLSCSL-DK-- 333 (434)
Q Consensus 267 ~~~~~h-~~~v~~l~~~~~~l~s~s----~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~l~~~~~~l~s~s~-dg-- 333 (434)
..+... ......+...++.|+.-+ ..+.|...++..... ...+..+.. .+..+...+++|+.... ++
T Consensus 270 ~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 222222 222333444455443322 246777788877652 334545544 56677776766665544 33
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC---CCeEEEEeCCCCcc
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSFAE 392 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~ 392 (434)
.|+++++...... ..........+..+...+..+ .+.+.-+. -.++..||+.+++.
T Consensus 350 ~l~v~~~~~~~~~-~~~~~p~~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 350 RLRVYDLDDGKES-REIPLPEAGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEETT-TEEE-EEEESSSSSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEECCCCcEE-eeecCCcceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCCE
Confidence 5788888722222 222222333345554443332 23333332 35788888887664
No 420
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.62 E-value=9.4 Score=33.95 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=53.6
Q ss_pred cEEEEEEeCC---EEEEEeCCCc-EEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC-----CcEEEEeCC
Q 013881 231 QVYAMAVGND---LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLE 301 (434)
Q Consensus 231 ~v~~l~~~~~---~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~ 301 (434)
+-..++++|. -++.+-.-|+ ..++|...............-|-..--.++.+|.+|+..-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3345666665 4444444444 567787766322111111111222222345567788776544 789999998
Q ss_pred CC-eEEEEEccccccEEEEEEc--CCEEEEEe
Q 013881 302 TL-QCIQTLTEHTSVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 302 ~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s 330 (434)
.+ +.+.++..|.-.-..+.+. ++.|+.+.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 53 4566666666555555554 66666553
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.53 E-value=1 Score=39.02 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=42.4
Q ss_pred EEEEEeCCCeEEEEeCCCCcccccc---------------cccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 372 VLLCSCNDNSVRFYDLPSFAERGKI---------------FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+|++-+.+|.+++||+.+++.+..- .....|..+.++.+| -|++- .+|..+.|+..
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 7888999999999999987655433 134568999999999 55544 45778888865
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=14 Score=35.20 Aligned_cols=139 Identities=7% Similarity=-0.015 Sum_probs=83.4
Q ss_pred cEEEecCCCeEEEEeCCC--CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE----ecCCc-
Q 013881 121 NCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----NLGGE- 193 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~- 193 (434)
..+.+...|.+.-|.+.. ..-++..-..-+++|.+|.||+|.+.||.--.|.+|.+.+....+..... +....
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 455555555566665542 11233333345679999999999999999999999999998544322221 22222
Q ss_pred eEEEE-eCCCEEEEEcCCcEEEEE--CCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCC
Q 013881 194 VGCMI-SEGPWIFIGVTNFVKAWN--TQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 194 ~~~~~-~~~~~l~~~~~~~i~~w~--~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~ 259 (434)
+..+. .++.-++.-.+..+-+|. .+.........|...|....|.++ +|+++-..+++.=+.++++
T Consensus 115 IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33333 344555555555455554 344444456778889999999888 3444435555555555443
No 423
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.07 E-value=6.2 Score=30.80 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=44.4
Q ss_pred cEEEEEeccC--CCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC----CcEEEEeCCCCCEEEEEccC
Q 013881 357 GVLALCGMPD--SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP----GGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 357 ~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp----dg~l~s~~~dg~i~iwd~~~ 429 (434)
.+.+++.-+. ..+...|+.|+ ...|..||+.....+......+.|+++.+-. +.-|+..+.+..|.=||.+-
T Consensus 49 ~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 49 EITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 3555554443 23334677775 5689999999888777777778888887732 22344444445555555443
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.06 E-value=1.7 Score=37.65 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=50.5
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEE------ec-------CccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ------LE-------GHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~------l~-------~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
++..+.-....++..+.+|.+++||+.++...+.. +. .....|..+.++.+|.-|++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 55666666777888999999999999987222222 22 3556788888888887777655 4677888
Q ss_pred ECCCCc
Q 013881 178 DCASGQ 183 (434)
Q Consensus 178 d~~~~~ 183 (434)
+..-+.
T Consensus 93 ~~~L~~ 98 (219)
T PF07569_consen 93 SPDLGC 98 (219)
T ss_pred ccccce
Confidence 865443
No 425
>PLN02153 epithiospecifier protein
Probab=90.98 E-value=13 Score=34.57 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=56.2
Q ss_pred cEEEEECCCCceEEecC------CCCc-EEEEEEeCC-EEEEEeCC-----------CcEEEEEcCCCCCccccceeec-
Q 013881 211 FVKAWNTQTNTDLSLSG------PVGQ-VYAMAVGND-LLFAGTQD-----------GAILAWKFNVTTNCFEPAASLK- 270 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~------~~~~-v~~l~~~~~-~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~- 270 (434)
.+.+||+.+.+-..+.. ...+ -.+++...+ +++.|+.+ ..|.+||+.+.. +..+....
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~ 179 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGE 179 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCC
Confidence 67788988766543321 1111 223344444 55666643 246778876542 22221111
Q ss_pred --CccceEEEEEECCCEEEEecCC-------------CcEEEEeCCCCeEEEEEc-----cccccEEEEEEcCCEEEEEe
Q 013881 271 --GHSLAVVSLVVGANKLYSGSMD-------------NSIRVWNLETLQCIQTLT-----EHTSVVMSLLCWDQFLLSCS 330 (434)
Q Consensus 271 --~h~~~v~~l~~~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~l~s~s 330 (434)
..........+++..++.++.+ ..|.+||+.+.+-...-. .......++.+.+..++.|+
T Consensus 180 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 180 NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred CCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 1111122334566655554432 468889988765432211 11112233344456666666
Q ss_pred C
Q 013881 331 L 331 (434)
Q Consensus 331 ~ 331 (434)
.
T Consensus 260 ~ 260 (341)
T PLN02153 260 E 260 (341)
T ss_pred c
Confidence 4
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.88 E-value=4.8 Score=40.48 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=41.2
Q ss_pred ecCCCeEEEEeCCCCceEEEEec-CccccEEEEEc--cCCCCEEEEEECCCcEEEEEC
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITL--PSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~-~h~~~V~~l~~--s~~~~~l~s~s~dg~v~iwd~ 179 (434)
-+....+.|||...+ .+...-. ...+.|.++.| .|+++.+++.+....|.++.-
T Consensus 47 ~~~~~~LtIWD~~~~-~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 47 DSSRSELTIWDTRSG-VLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred ECCCCEEEEEEcCCc-EEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344568999999987 3322221 45789999999 579999999999999999864
No 427
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.36 E-value=16 Score=34.48 Aligned_cols=153 Identities=16% Similarity=0.024 Sum_probs=82.4
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCcc-ceE-EEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccc---c
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---V 315 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~-~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~ 315 (434)
.++.++.++.++.+|.+++.. .-...... ..+ .........++..+.++.+...|..+++.......... .
T Consensus 113 ~i~~g~~~g~~y~ld~~~G~~----~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 113 KIYVGSWDGKLYALDASTGTL----VWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred eEEEecccceEEEEECCCCcE----EEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 789999999888888876633 33332222 111 11112234556666789999999998888766543221 1
Q ss_pred E-EEEEEcCCEEEEEeC--CCcEEEEEcCCCCceEEEeeecCCc--cE---EEEEeccCCCCCcEEEEEeCCCeEEEEeC
Q 013881 316 V-MSLLCWDQFLLSCSL--DKTIKVWFATDSGNLEVTYTHNEEH--GV---LALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (434)
Q Consensus 316 v-~~l~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 387 (434)
+ .........+..+.. ++.+.-.|..++............. .+ ..+..-+-..+. -+..++.++.+...+.
T Consensus 189 ~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 189 IYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDA 267 (370)
T ss_pred cccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEc
Confidence 1 111123455555555 5666666776665444322111110 00 011100000011 2456667788888899
Q ss_pred CCCcccccccc
Q 013881 388 PSFAERGKIFA 398 (434)
Q Consensus 388 ~~~~~~~~~~~ 398 (434)
.+++.+.+...
T Consensus 268 ~~G~~~W~~~~ 278 (370)
T COG1520 268 DTGELIWSFPA 278 (370)
T ss_pred CCCceEEEEec
Confidence 98888877655
No 428
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.29 E-value=2.9 Score=42.00 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=46.2
Q ss_pred eCCcEEEecCCCeEEEEeCCC----CceEEEEec-Cc--------------------cccEEEEEccC----CCCEEEEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGD----GFKLLTQLE-GH--------------------QKVVSGITLPS----GSDKLYSG 168 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~----~~~~~~~l~-~h--------------------~~~V~~l~~s~----~~~~l~s~ 168 (434)
....++.+..||.|....... +......+. .+ ...+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556677777888777766553 211111111 11 23456667766 78899999
Q ss_pred ECCCcEEEEECCCCceEEEEecC
Q 013881 169 SKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
+.|+++|+||+.+++++.+....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998877654
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.69 E-value=1.3 Score=26.79 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=25.3
Q ss_pred CcEEEEEecCCc----EEEEeCCCCCEEEEEccCC
Q 013881 400 QEIRAIQLGPGG----LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 400 ~~v~~~~~spdg----~l~s~~~dg~i~iwd~~~g 430 (434)
+.|+++.|+|+. +|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999632 7888888899999999853
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=12 Score=31.78 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=83.4
Q ss_pred CCCEEEEEECC--CcEEEEECCCCceEEEEecCC-ce--EEEEeCCC--EEEEEcCCcEEEEECCCCceEEecCCCCcEE
Q 013881 161 GSDKLYSGSKD--ETVRVWDCASGQCAGVINLGG-EV--GCMISEGP--WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233 (434)
Q Consensus 161 ~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~-~~--~~~~~~~~--~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~ 233 (434)
++.++.+.+.- ..|++||+.+++.+...+... .+ ..+..-+. +..+=.++.-..+|..+-+.+-.....+.=+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45666776654 469999999999888777662 11 01111122 2333346777778888777665555566667
Q ss_pred EEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCc-cceEEEEEE-CCCEEEEecCCCcEEEEeCCCCeEEEEE
Q 013881 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-SLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTL 309 (434)
Q Consensus 234 ~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 309 (434)
.++...+.|+.+....++..-|..+-...-....+..+. -..+..+.+ +|...+-.=.+..|...|..+|+.+..+
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 777777777777777777777765532211111122211 111233444 3444443444455666666677665544
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.35 E-value=0.11 Score=49.04 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=107.3
Q ss_pred CCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEEC--CCEEEEecCCCcEEEEeCCC
Q 013881 229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 229 ~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 302 (434)
++....++|+.+ .++.+-..+.+.+||+.+... ....+. .|.... +.|+ ...++.+...|.+.+++..+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---HHHhccCcchHHH--HhhccCCccccccccccceEEEeccc
Confidence 334445566544 666778889999999987521 111111 122222 3444 34677778899999999998
Q ss_pred CeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC--ccEEEEEeccCCCCCcEEEEEeCC
Q 013881 303 LQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE--HGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
.+.+-....|...++++++. .++.+.++.|..+.+-...+.. .......... .....+........+..+.+. ..
T Consensus 149 sR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeget-a~ltevggepdnm~~~y~k~n~w~kage~m~sV-vs 226 (615)
T KOG2247|consen 149 SRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGET-ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSV-VS 226 (615)
T ss_pred hhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccce-eeeeeccCccchhhhheeeeeccccccceeeee-ee
Confidence 87777776699999999998 7888888887766554332211 1111111110 000011111111111111111 01
Q ss_pred CeEEEE--e---CCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 380 NSVRFY--D---LPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 380 g~i~iw--d---~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+.+++. . .+....+ .+. ..+.+.++.|--||+|..+.+-|.|-.-...++++
T Consensus 227 gKkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 227 GKKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAEL 284 (615)
T ss_pred cHHHHHHHhhcCCCCccce-EeeecCCceeEEEEeccccccccccceeEEEEeccchHH
Confidence 111111 1 1111111 111 25668889998898888888888887777777665
No 432
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.24 E-value=13 Score=35.46 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred cCCCcEEEEeCCCCeEEEEEccccc--cEEEEEEc--C---CEEEEEeCCCcEEEEEcCCCCce-----EEEeeecC---
Q 013881 290 SMDNSIRVWNLETLQCIQTLTEHTS--VVMSLLCW--D---QFLLSCSLDKTIKVWFATDSGNL-----EVTYTHNE--- 354 (434)
Q Consensus 290 s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~~--~---~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~--- 354 (434)
-...++.+||+.+.+.++++.-... ....+.|. + .-++.+....+|..|--...... ..+.....
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 3457899999999999999876433 34566665 2 23444445666666644322211 11111100
Q ss_pred ------------CccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCC
Q 013881 355 ------------EHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSF 390 (434)
Q Consensus 355 ------------~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 390 (434)
..-++.+..+.+.. +|..++ .+|.|+.||+...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDr---fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDR---FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS----EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccCCCceEeEEEccCCC---EEEEEcccCCcEEEEecCCC
Confidence 12345555554433 665555 6999999999763
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.91 E-value=20 Score=33.37 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=33.9
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccc---cc--ccCcEEEEEecCCc-EEEEeCCCCCEE
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGK---IF--AKQEIRAIQLGPGG-LFFTGDGTGQVR 423 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~---~~--~~~~v~~~~~spdg-~l~s~~~dg~i~ 423 (434)
.++++.-..+.|....+.....+.. +. ....+..|++.||| ++++-+.+|.|+
T Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3555555567888888764432221 11 23479999999999 777777888874
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=26 Score=35.64 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec------CCceEEEEeCC
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL------GGEVGCMISEG 201 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~ 201 (434)
--.|+|++... +++..+.-....+-.+.|+.+.. |+....||++.++++... .+..... ..-..|..+.+
T Consensus 63 ~~~I~If~~sG--~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFNISG--QLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEeccc--cchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecC
Confidence 34688888764 45555444445888899996654 667789999999998543 2222111 22344555666
Q ss_pred CEEEEEcCCcEEEE-ECCCCceEEecC---CCCcEEEEEE-eCC----E-EEEEeCCCcEEEEEcCCCCCccccceeecC
Q 013881 202 PWIFIGVTNFVKAW-NTQTNTDLSLSG---PVGQVYAMAV-GND----L-LFAGTQDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 202 ~~l~~~~~~~i~~w-~~~~~~~~~~~~---~~~~v~~l~~-~~~----~-l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
...+...++.+.+. +........+.. ....-.+... .+. . +...-..+ ..++...... .....+..
T Consensus 139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~ 214 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSW 214 (829)
T ss_pred ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCC
Confidence 66666666655443 333323222222 1111122222 221 1 11111111 1111111111 11111111
Q ss_pred ccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEc
Q 013881 272 HSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (434)
Q Consensus 272 h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 310 (434)
....+..+.. +..+|+--..+|.|.+-+....+....+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1234444444 45678888899999999887777666554
No 435
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.68 E-value=15 Score=31.74 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc---EEEEeCC
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG---LFFTGDG 418 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg---~l~s~~~ 418 (434)
++.+.++.-..++|...|..+++.+.++.. ...|++++|--.. +.+|+..
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 334666667788999999999999988764 7789999997553 4455443
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=8.9 Score=32.44 Aligned_cols=173 Identities=13% Similarity=0.030 Sum_probs=90.9
Q ss_pred EEEeCC-EEEEEeCC--CcEEEEEcCCCCCccccceeecCccceE--EEEEECCCEEE-EecCCCcEEEEeCCCCeEEEE
Q 013881 235 MAVGND-LLFAGTQD--GAILAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLY-SGSMDNSIRVWNLETLQCIQT 308 (434)
Q Consensus 235 l~~~~~-~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~ 308 (434)
+..... ++.+.+.- ..|++||+.+++. +....-....+ ..+.-.++.++ ..-.+|.-..+|.++.+++..
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 333333 44444433 4688999987632 22111111111 12222355443 344688889999999888777
Q ss_pred EccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEE---EeccCCCCCcEEEEEeCCCeEEEE
Q 013881 309 LTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL---CGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 309 ~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
+. .++.-..+..++..|+.+....+++.-|..+......+.......++..+ .|. ++.+.+--=.+..|...
T Consensus 127 ~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V----dG~lyANVw~t~~I~rI 201 (262)
T COG3823 127 FS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV----DGELYANVWQTTRIARI 201 (262)
T ss_pred cc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee----ccEEEEeeeeecceEEE
Confidence 64 34455777777777777777777777776655444333333322222222 221 11122222233344444
Q ss_pred eCCCCccccccc-------------ccCcEEEEEecCCc--EEEEe
Q 013881 386 DLPSFAERGKIF-------------AKQEIRAIQLGPGG--LFFTG 416 (434)
Q Consensus 386 d~~~~~~~~~~~-------------~~~~v~~~~~spdg--~l~s~ 416 (434)
|..+++.+.-+. +.+-.+.|++.|++ +++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 555554443321 23457889999988 55665
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.42 E-value=37 Score=35.99 Aligned_cols=172 Identities=11% Similarity=0.131 Sum_probs=105.0
Q ss_pred cEEEEECCCCceEEecCCC-----CcEEEEEEeCC----EEEEEe-----------CCCcEEEEEcCCCCCccccceeec
Q 013881 211 FVKAWNTQTNTDLSLSGPV-----GQVYAMAVGND----LLFAGT-----------QDGAILAWKFNVTTNCFEPAASLK 270 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~-----~~v~~l~~~~~----~l~~g~-----------~dg~i~vwd~~~~~~~~~~~~~~~ 270 (434)
.|+++|..++..+.+..+. -.+.++.|+.. +++++. .+|.++.|++-.....++.+.. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~-T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK-T 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec-c
Confidence 3777787777765333322 23455555443 333332 2355777776555432222222 2
Q ss_pred CccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEc--cccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCC-ceE
Q 013881 271 GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG-NLE 347 (434)
Q Consensus 271 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-~~~ 347 (434)
.-...+.+++.-.+++++| ....+++||+...++++... .-...|+.+.+....+++|...-.+.++-.+... .+.
T Consensus 933 ~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence 2345677777766665554 45689999999877765543 2356788888889999999887777776655433 444
Q ss_pred EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
.+.....+..+.++...... .++.+..=|.+.+-.++
T Consensus 1012 ~fadD~~pR~Vt~~~~lD~~----tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELLDYD----TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEeCCCccceeeEEEEecCC----ceeeccccCcEEEEECC
Confidence 55555555667777665443 37777777777777664
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.24 E-value=26 Score=33.97 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=73.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-------CCEEEEecCCCcEEEEeCCC-CeEEEEEccc
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-------ANKLYSGSMDNSIRVWNLET-LQCIQTLTEH 312 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~ 312 (434)
++..|.....++-.|+..+ +.+....-|...+....+. +..-+.|-.+..|.-.|.+- +..+... ..
T Consensus 482 i~~dg~~~~kLykmDIErG----kvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-es 556 (776)
T COG5167 482 IYLDGGERDKLYKMDIERG----KVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ES 556 (776)
T ss_pred EEecCCCcccceeeecccc----eeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-ee
Confidence 5556666777777788777 6666666666654443332 22344455566666667654 2222211 11
Q ss_pred cccEE-----E-EEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 313 TSVVM-----S-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 313 ~~~v~-----~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
...++ + ..-...++++++..|.|++||--.......+..... .+..+....++ . ++++.+ ..++.+-|
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~G--k-~ilaTC-k~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANG--K-HILATC-KNYLLLTD 630 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCC--c-EEEEee-cceEEEEe
Confidence 12222 1 222267999999999999998644332222222222 24444444333 3 444433 45777777
Q ss_pred CC
Q 013881 387 LP 388 (434)
Q Consensus 387 ~~ 388 (434)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.10 E-value=3.6 Score=41.27 Aligned_cols=72 Identities=28% Similarity=0.454 Sum_probs=42.7
Q ss_pred eCCEEEEEeCCCcEEEEEcCC---CCCccccc--------eeec-----------CccceE--EEEEE----CCCEEEEe
Q 013881 238 GNDLLFAGTQDGAILAWKFNV---TTNCFEPA--------ASLK-----------GHSLAV--VSLVV----GANKLYSG 289 (434)
Q Consensus 238 ~~~~l~~g~~dg~i~vwd~~~---~~~~~~~~--------~~~~-----------~h~~~v--~~l~~----~~~~l~s~ 289 (434)
++..++++..||.+....... ....+... ..+. .....+ ..+.. +.+++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 555888889999999888775 11110000 0000 001222 23333 45689999
Q ss_pred cCCCcEEEEeCCCCeEEEEE
Q 013881 290 SMDNSIRVWNLETLQCIQTL 309 (434)
Q Consensus 290 s~dg~i~vwd~~~~~~~~~~ 309 (434)
+.|++||+||+.+++++.+.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999997665
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.10 E-value=15 Score=37.94 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=19.2
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
.+..+.|+|.+..+..|++-+.|+++++||+..
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 355566666554444556666666666666643
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.02 E-value=5.2 Score=38.17 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=42.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
.+...|......+.+|+.+|++++.|+...=|.|.++|+.++..++.++.-
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 344556666778999999999999999888899999999999888877654
No 442
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.84 E-value=5.3 Score=38.10 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=39.4
Q ss_pred cEEEEEeccC--------CCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC
Q 013881 357 GVLALCGMPD--------SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 357 ~~~~~~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 409 (434)
.|+++.+.|. ..+...+++|..+|.|++|.....-+..+..|..+|..|.+..
T Consensus 58 ~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 58 CITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 5666666654 2345689999999999999986555556677888888887644
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=23 Score=38.37 Aligned_cols=151 Identities=13% Similarity=0.222 Sum_probs=78.0
Q ss_pred EEecCCCeEEEEeCCCCceEEEEecCccccEEEEEc-cC-------CCCEEEEEECCCcEEEEECCCCceEEEEecCCce
Q 013881 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PS-------GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV 194 (434)
Q Consensus 123 ~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~-s~-------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 194 (434)
+=.+.|..+.+|+.+++ .....+.+-...|..+.+ -| .=++|+.-..--.|.|+-+.-.+....
T Consensus 93 aWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~------- 164 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE------- 164 (1311)
T ss_pred eEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc-------
Confidence 33567889999999987 667778877778877765 22 223333333333344443322111000
Q ss_pred EEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCcc----------
Q 013881 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCF---------- 263 (434)
Q Consensus 195 ~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~---------- 263 (434)
..++.. ...+......|.++....+ .++.++.||.|+-.-+.....-+
T Consensus 165 -----------------~~~f~~----~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 165 -----------------LSIFNT----SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred -----------------cccccc----ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCc
Confidence 000000 0122233456777775555 77777777744332222211000
Q ss_pred --------ccceeec-CccceEEEEEECC--CEEEEecCCCcEEEEeCCC
Q 013881 264 --------EPAASLK-GHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 264 --------~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 302 (434)
..+..+. .+..+|..+..+. +.+++-+..|+|.+||+..
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0011122 4556777777764 3566777777777777755
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.18 E-value=4.1 Score=24.12 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCceEEEEecCCc
Q 013881 160 SGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGE 193 (434)
Q Consensus 160 ~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~ 193 (434)
|++++|+++. .+++|.++|..+++.+..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 5677666655 478999999998888887766443
No 445
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=26 Score=37.89 Aligned_cols=104 Identities=8% Similarity=0.187 Sum_probs=55.2
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc-----eEEEEeCCCEEEEEcCCcEEEEECCCCceEEe
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~ 225 (434)
.....++|+|...++|.+..+|.|+++-...-+.......... +..+..............+.+|.........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4566789999999999999999999997654433322222111 1111112222233334445555443322221
Q ss_pred cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
+...+++....+- . +.| ..+.+++||....
T Consensus 115 --~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 115 --LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH 146 (993)
T ss_pred --cCCcceeccCCCCcch-hcc-cCceeeEeeechh
Confidence 1222222222222 4 555 8888888887543
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=13 Score=39.64 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=73.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCCcc-ccceeecCc------cceEEEEEECCC---EEEEecCCCcEEEEeCCCCeE-EEEE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCF-EPAASLKGH------SLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQC-IQTL 309 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~h------~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~-~~~~ 309 (434)
.++..+.+-.|..||++.-.... +....+..| .....++.|++. ..+....|+.|++..+..... +..+
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 34444455678899987643211 111212222 223456667654 577778899999888754322 2222
Q ss_pred ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEee-e-cCCccEEEEEeccCCC
Q 013881 310 TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT-H-NEEHGVLALCGMPDSE 368 (434)
Q Consensus 310 ~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 368 (434)
......++++|+ |..++.|-..|++.-|...-... ..+.. . .....+.+++|.....
T Consensus 196 -p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 196 -PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-SEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred -CcccceeeEEeccccceeeEecCCCeEEEeeccccee-ecccCCCcCCCcceeEEEEeccee
Confidence 345567899998 78999999999999986532211 11111 1 1135688888875543
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.33 E-value=30 Score=32.63 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCCcccccee----ecCccceEEEEEE--C---CC-EEEEecCCCcEEEEeCC---CC----eEEEEEcc
Q 013881 249 GAILAWKFNVTTNCFEPAAS----LKGHSLAVVSLVV--G---AN-KLYSGSMDNSIRVWNLE---TL----QCIQTLTE 311 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~--~---~~-~l~s~s~dg~i~vwd~~---~~----~~~~~~~~ 311 (434)
.+|++|.+......+..+.. +......+..++. + +. +++....+|.+..|.+. .+ +.+++|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46999988743221111110 1111223555554 2 33 57778888988888764 22 46777765
Q ss_pred ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCC--ceEEEee---ecCCccEEEEEeccCCCCCcEEEEEe-CCCeEE
Q 013881 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG--NLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVR 383 (434)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~ 383 (434)
. ..+-.+..+ ..+|..+-++.-|.-|+.+... ....+.. ......+-.++......+..||++++ .+++..
T Consensus 207 ~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 207 G-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred C-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 3 356777777 4689999999888888876332 1122211 11123455666554444333555544 678999
Q ss_pred EEeCCC
Q 013881 384 FYDLPS 389 (434)
Q Consensus 384 iwd~~~ 389 (434)
||+...
T Consensus 286 Vy~r~~ 291 (381)
T PF02333_consen 286 VYDREG 291 (381)
T ss_dssp EEESST
T ss_pred EEecCC
Confidence 999875
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=12 Score=37.77 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=32.6
Q ss_pred EEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCC
Q 013881 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~ 259 (434)
|.+++......-.+.-....+..+.|+.+ .|++-..+|++++|++...
T Consensus 66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 66 IRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred EEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence 34444433332222223347889999998 8999999999999998654
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.18 E-value=23 Score=30.26 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=41.4
Q ss_pred CCcEEEecCCCeEEEEeCC-CCceEEEEecCccccEEEEEccCCCCEEEEEEC
Q 013881 119 QGNCMYGEKCKFLHSWTVG-DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK 170 (434)
Q Consensus 119 ~~~~~~g~~d~~i~vwd~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~ 170 (434)
++.++.+.....|.+|++. ...+++..|..- +.|..|.++..|+||+|--.
T Consensus 28 ~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 28 PDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 3677777888899999998 445777777744 88999999999999999744
No 450
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.16 E-value=33 Score=32.03 Aligned_cols=92 Identities=8% Similarity=0.070 Sum_probs=42.6
Q ss_pred EEEEEeC-CCcEEEEEcCCCCCccccceeecC-ccceEEEEEECCCEEEEecCC-----------CcEEEEeCCCCeEEE
Q 013881 241 LLFAGTQ-DGAILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVGANKLYSGSMD-----------NSIRVWNLETLQCIQ 307 (434)
Q Consensus 241 ~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~ 307 (434)
+.++|+. ...+..+|+......+..+..+.. ..........++...+.|+.+ ..+..||+.+.+-..
T Consensus 20 vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~ 99 (346)
T TIGR03547 20 VYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99 (346)
T ss_pred EEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence 3333443 345666776433333333333321 112223444566666666653 247788887754332
Q ss_pred EEccc---cccEEEE-EEcCCEEEEEeCC
Q 013881 308 TLTEH---TSVVMSL-LCWDQFLLSCSLD 332 (434)
Q Consensus 308 ~~~~~---~~~v~~l-~~~~~~l~s~s~d 332 (434)
.-... ......+ ...++..+.|+.+
T Consensus 100 ~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 100 LDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 21111 1112223 2446666777654
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.14 E-value=31 Score=31.80 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=52.0
Q ss_pred EEEeCCEEEEEeCC-----CcEEEEEcCCCCCc--cccceeecCccceEEEEEECCCEEEEecC-----CCcEEEEeCCC
Q 013881 235 MAVGNDLLFAGTQD-----GAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYSGSM-----DNSIRVWNLET 302 (434)
Q Consensus 235 l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-----dg~i~vwd~~~ 302 (434)
+.....+++.|+.+ ..+..+|+....-. +.....+............++...+.|+. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 33333355666654 34666676654310 01111121111112233445666666654 24688899876
Q ss_pred CeEEE--EEccc-cccEEEEEEcCCEEEEEeCCC----cEEEEEcCCCC
Q 013881 303 LQCIQ--TLTEH-TSVVMSLLCWDQFLLSCSLDK----TIKVWFATDSG 344 (434)
Q Consensus 303 ~~~~~--~~~~~-~~~v~~l~~~~~~l~s~s~dg----~i~vwd~~~~~ 344 (434)
.+-.. .+... .....++...++..+.|+.++ .+.+||..+..
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 54322 22211 111223344566777777654 35678877653
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=19 Score=38.96 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=81.6
Q ss_pred cCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---C-------CEEEEEeCCCcEEEEEcCCCCc---eEE----Eeee
Q 013881 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---D-------QFLLSCSLDKTIKVWFATDSGN---LEV----TYTH 352 (434)
Q Consensus 290 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~-------~~l~s~s~dg~i~vwd~~~~~~---~~~----~~~~ 352 (434)
+-|+.+.+|+.+++.....+.+-...|..+..- + ++++..+.--.|.++-+..... ... +.-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 468899999999988888888777777766654 1 3455555555666664432211 111 1111
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeC----CCC---c------------------ccccc-cccCcEEEEE
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL----PSF---A------------------ERGKI-FAKQEIRAIQ 406 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~---~------------------~~~~~-~~~~~v~~~~ 406 (434)
.....+.++... +++++++ ++.||. +|.+ ..+ + ..... .+.++|..++
T Consensus 176 ~dg~~V~~I~~t---~nGRIF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCITYT---ENGRIFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cCCceEEEEEec---cCCcEEE-eecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 233456666643 3333555 456774 4443 110 0 00111 2366899999
Q ss_pred ecCCc-EEEEeCCCCCEEEEEccC
Q 013881 407 LGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 407 ~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+.... .+.+-+..|+|.+|++..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 98877 999999999999999987
No 453
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=84.60 E-value=64 Score=34.94 Aligned_cols=180 Identities=15% Similarity=0.120 Sum_probs=102.8
Q ss_pred EcCCcEEEEECCCCceEE---e--cCCCCcEEEEEEeCC--------EEEEEeC---------CCcEEEEEcCC-----C
Q 013881 207 GVTNFVKAWNTQTNTDLS---L--SGPVGQVYAMAVGND--------LLFAGTQ---------DGAILAWKFNV-----T 259 (434)
Q Consensus 207 ~~~~~i~~w~~~~~~~~~---~--~~~~~~v~~l~~~~~--------~l~~g~~---------dg~i~vwd~~~-----~ 259 (434)
+....|.+...++.+.+. + ..|.-.+..+..... +|++|.. .|.+.++|+-. +
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 445566676666665541 1 123223333322211 7777753 48899999754 1
Q ss_pred CCc--cccc-eeecCccceEEEEEECCCEEEEecCCCcEEEEeC-CCCeEEEE-EccccccEEEEEEcCCEEEEEeCCCc
Q 013881 260 TNC--FEPA-ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL-ETLQCIQT-LTEHTSVVMSLLCWDQFLLSCSLDKT 334 (434)
Q Consensus 260 ~~~--~~~~-~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~-~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~s~dg~ 334 (434)
++. .+.. ...+...++|..++--..+|+++. ..+|.+|++ +....+-. |-.-.-.+.++..-.++|+.|.--..
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence 100 0111 111234567777665555555543 457999999 44444321 22233344455445888999988888
Q ss_pred EEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 335 IKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 335 i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
|.+.-...... +..+......-.+.+..|.-++.+- .++++..|+.|++|-..
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L-~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNL-SFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCee-EEEEEcCCCcEEEEEeC
Confidence 88877654433 3333333344567788888776554 67888899999998664
No 454
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.47 E-value=30 Score=31.26 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE------CCCcEEEEECCCCce
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQC 184 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s------~dg~v~iwd~~~~~~ 184 (434)
.+..|.+||..+. +-..--.+-.+.|++|.|..+.++++.|. ....+..||+.+..-
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 5778999998875 54444455678999999987777777774 356788898877653
No 455
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.96 E-value=10 Score=38.85 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=77.4
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEE---ecCccccEEEEEccCCCCEEEEEECCCcEEE--------EECCCCceEEEEe
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQ---LEGHQKVVSGITLPSGSDKLYSGSKDETVRV--------WDCASGQCAGVIN 189 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i--------wd~~~~~~~~~~~ 189 (434)
....|+.++.|.++.-..+...... .......+.++.+++.. +..|.-||++-. ||.+-... ...
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~ep~~~--~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGEPNIS--IPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCCCccc--ccc
Confidence 4666888888888876632122222 22334567777766432 444444554433 55442111 122
Q ss_pred cCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE----EecCCCCcEEEEEEeCCEEEEEeCCCc-EEEEE
Q 013881 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDLLFAGTQDGA-ILAWK 255 (434)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~----~~~~~~~~v~~l~~~~~~l~~g~~dg~-i~vwd 255 (434)
...++....+...++.++.+|.|.++...+.... ....|...|+++.....-+..+-..|. ++.++
T Consensus 625 g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh 695 (925)
T KOG3522|consen 625 GSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH 695 (925)
T ss_pred CCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence 3345666677888999999999999988765433 345577889999998884444434443 33333
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.58 E-value=0.13 Score=48.55 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=88.1
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEE
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 359 (434)
+.-++.++.+-.+..||- .++.+..+. .++....++|+ +..++.+-..+.+.+||+.+....+...........
T Consensus 46 ~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl- 122 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL- 122 (615)
T ss_pred CCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence 334777888888888884 344433332 23334455565 345566677899999999765443333332222111
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEE
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVR 423 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~ 423 (434)
+.| +++...++.+...|.+.|++..+.+.+.... |...++++++.+.++.+.++.|..+.
T Consensus 123 -l~w---sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 123 -LAW---SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred -Hhh---ccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 334 3444478888889999999998877777766 77889999999999777777665443
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.38 E-value=28 Score=29.78 Aligned_cols=144 Identities=14% Similarity=0.208 Sum_probs=79.0
Q ss_pred EEEECC-CEEEEecCCCcEEEEeCC--CCeEEEEEccccccEEEEEEc--CCEEEEEeCCC------cEEEE---EcC--
Q 013881 278 SLVVGA-NKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK------TIKVW---FAT-- 341 (434)
Q Consensus 278 ~l~~~~-~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg------~i~vw---d~~-- 341 (434)
.+...+ +.|+.+.....|.+|++. ..+.+.+|..- +.|..+.++ |++|++--.+. .+|+| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344445 777666777889999998 34556666544 778888888 89999875432 56665 211
Q ss_pred CCCceE-EEee-------------------ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-ccc-----
Q 013881 342 DSGNLE-VTYT-------------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE-RGK----- 395 (434)
Q Consensus 342 ~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~----- 395 (434)
....+. ...+ .+......+++..|... -|++|+ ++.+.+|.+..... ...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG---~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG---NLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC---CEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 111111 0111 11122344555554432 255554 56888998765433 111
Q ss_pred c-----cc--cCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 396 I-----FA--KQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 396 ~-----~~--~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
+ .+ .-....+++..+ ++|..+. -.+++.++.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic~~-yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAICEG-YIAVMSD-LEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEEee-EEEEecC-CEEEEEEEe
Confidence 1 11 222556666544 6665544 457777764
No 458
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.26 E-value=3.7 Score=24.31 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=24.4
Q ss_pred EEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEe
Q 013881 372 VLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQL 407 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 407 (434)
++++.-.+++|.++|..+++.+..+........++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 445455688999999988887777655444444444
No 459
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=83.21 E-value=63 Score=33.73 Aligned_cols=259 Identities=9% Similarity=0.069 Sum_probs=114.0
Q ss_pred EeCCcEEEecCCCeEEEEeCCCC------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 117 WVQGNCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 117 ~~~~~~~~g~~d~~i~vwd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
|+....+....-..+++.....+ .-++...+-| +.+..+++++.+++++.|+.... =+... ..
T Consensus 870 ~s~rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~~~~~-Ktlqklvyh~~~~~~~Vgsc~~~--~f~~~--------gE 938 (1319)
T COG5161 870 LSKRGYLMVDNVLGVRASQYVFDNGYVGNKNPVKRTPKH-KTLQKLVYHCAGRYMVVGSCEEA--GFSPK--------GE 938 (1319)
T ss_pred cccccEEEEecccceeEEEEEeccceecccCceeecccc-ccccceeeeccceEEEEEeeeec--Ccccc--------CC
Confidence 34444444444445555443322 1234444444 67888899999999888864210 00000 00
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEE-e-cCCCCcEEEEEE-----eCC------EEEEEeC---------C
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-L-SGPVGQVYAMAV-----GND------LLFAGTQ---------D 248 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~-~-~~~~~~v~~l~~-----~~~------~l~~g~~---------d 248 (434)
.++......++...+-+..+.+-+++..+.+.+. . .....-+..++. +.. ++++|.. .
T Consensus 939 dgE~~i~~D~Nvphaeg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~gED~p~r 1018 (1319)
T COG5161 939 DGESGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIEGEDRPAR 1018 (1319)
T ss_pred CCCccCccCCCCcccccceeeEEEecCcceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeecccCccCCc
Confidence 0111111122333344444555555555544431 1 111122222222 111 5665542 2
Q ss_pred CcEEEEEcCCCCCc-------cccce-eecCccceEE-EEEECCCEEEEecCCCcEEEEeCCCCeEEE--EEccccccEE
Q 013881 249 GAILAWKFNVTTNC-------FEPAA-SLKGHSLAVV-SLVVGANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVVM 317 (434)
Q Consensus 249 g~i~vwd~~~~~~~-------~~~~~-~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~ 317 (434)
|..+++++-.--+. .+... ....-.+.|. ....+|..+.+- ...|.+.+++...-+- .|-.-...+.
T Consensus 1019 G~~hv~eII~VVP~pg~P~t~~KLK~~~~Ee~kGTV~~vcEV~G~~~~~q--gqKV~Vr~i~~~~~iipV~F~Dl~~ft~ 1096 (1319)
T COG5161 1019 GRLHVLEIISVVPSPGSPFTDCKLKVLGIEETKGTVVRVCEVRGKIALCQ--GQKVMVRKIDRSSGIIPVGFYDLHIFTS 1096 (1319)
T ss_pred CceEEEEEEEecCCCCCCcccceeeEEehhhcccEEEEEEEEccEEEecc--CcEEEEEEecccCCcceeEEEeeeeeee
Confidence 77788875321110 00000 0111222332 233344444332 3455566654422211 1111111222
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 318 SLLCWDQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 318 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
+...-+++|+.|..-..+.++-.....- +..+........+.+..|...+.+ -+++++..+|.|+++....
T Consensus 1097 s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~-lyf~~~Da~gnih~l~Y~P 1168 (1319)
T COG5161 1097 SIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNE-LYFLCCDAKGNIHGLTYSP 1168 (1319)
T ss_pred hhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCe-eEEEEEcCCCCEEEEecCC
Confidence 3333367888777666666654433221 111222222233445555554443 3788888999999987654
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.13 E-value=48 Score=32.37 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 56777788999999999999865554
No 461
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.04 E-value=4.2 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEE
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTL 309 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~ 309 (434)
+..++.++.+|.+..+|.++++.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446778888899999998888876543
No 462
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.94 E-value=41 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=20.7
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
+..+...+.. +++++.+.++.|.+|++..
T Consensus 192 I~~v~~d~~r---~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSR---RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTT---TEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCc---CEEEEEeCCCcEEEEEEeC
Confidence 6666654433 4899999999999999974
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.45 E-value=6 Score=32.76 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEEeCCcEEEecCCCeEEEEe
Q 013881 113 LCRNWVQGNCMYGEKCKFLHSWT 135 (434)
Q Consensus 113 ~c~~~~~~~~~~g~~d~~i~vwd 135 (434)
.|++|+.|+.++...+..|+|.+
T Consensus 8 ~~l~WS~Dg~laV~t~~~v~IL~ 30 (173)
T PF12657_consen 8 NALAWSEDGQLAVATGESVHILD 30 (173)
T ss_pred cCeeECCCCCEEEEcCCeEEEEe
Confidence 57999999888888888899983
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=13 Score=39.52 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=64.5
Q ss_pred EeCCCcEEEEEcCCCCceE-----EEe----eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-ccccc
Q 013881 329 CSLDKTIKVWFATDSGNLE-----VTY----THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER-GKIFA 398 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~ 398 (434)
.+.+-.|..||+++..... .+. ..........+.|.|..+. ..++...|+.|++..+...... ..+..
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~--n~av~l~dlsl~V~~~~~~~~~v~s~p~ 197 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL--NSAVDLSDLSLRVKSTKQLAQNVTSFPV 197 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc--hhhhhccccchhhhhhhhhhhhhcccCc
Confidence 3345578888887543211 011 1112234556667776654 3566678999999887654333 33455
Q ss_pred cCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 399 KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 399 ~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
....++++|+|.| .++.|-..|++.-|...
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 7789999999999 99999999999888654
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.83 E-value=1.5 Score=44.82 Aligned_cols=179 Identities=13% Similarity=0.174 Sum_probs=100.0
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEcc-CCCCEEEEEECCCcEEEEECCC--CceEEEEecCCceEEEEeCCCEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDCAS--GQCAGVINLGGEVGCMISEGPWIF 205 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s-~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 205 (434)
+.+++=+..+.++.-..++|..+.|-.|.|. -+...++ -.-|.+.|||+.- |+....+..
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v--------------- 173 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV--------------- 173 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE---------------
Confidence 5577777666533223456777888888883 2333332 2336788998753 222111100
Q ss_pred EEcCCcEEEEECCCCceEEecCCCCcEEEEEEe---CC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE----
Q 013881 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG---ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV---- 276 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~---~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v---- 276 (434)
.........+.-+.|. .+ ++..+-.++.|++...+... ...+.+|...+
T Consensus 174 -----------------~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-----~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 174 -----------------TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-----RSLFRSHSQRVTDMA 231 (1283)
T ss_pred -----------------eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-----HHHHHhcCCCcccHH
Confidence 0011111122223332 22 77778888999988877642 23334455444
Q ss_pred ---------EEEEECCCEEEEecCCCcEEEEeCC-----CCeEEEEEcccc-ccEEEEEEcC-----------CEEEEEe
Q 013881 277 ---------VSLVVGANKLYSGSMDNSIRVWNLE-----TLQCIQTLTEHT-SVVMSLLCWD-----------QFLLSCS 330 (434)
Q Consensus 277 ---------~~l~~~~~~l~s~s~dg~i~vwd~~-----~~~~~~~~~~~~-~~v~~l~~~~-----------~~l~s~s 330 (434)
..++++|..|+.++.||.++.|.+. ...|+...+.|. .+-.|..+.. .++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 3455678889999999988877653 345566677776 4445554542 1344444
Q ss_pred -CCCcEEEEEcCCCCce
Q 013881 331 -LDKTIKVWFATDSGNL 346 (434)
Q Consensus 331 -~dg~i~vwd~~~~~~~ 346 (434)
....+++|.....+++
T Consensus 312 d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCcceeEeeccchhhh
Confidence 3567899976655554
No 466
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=81.68 E-value=0.87 Score=23.29 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.2
Q ss_pred eeeeeccC-ccCCCCCCcccc
Q 013881 37 VCNYWRAG-KCNRFPCPYLHR 56 (434)
Q Consensus 37 ~~~~~~~~-~~~~~~c~~l~~ 56 (434)
.|.|=.+| .||..-|+|.|.
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCCCCCCcccc
Confidence 47777888 999999999985
No 467
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.88 E-value=1.6 Score=44.70 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=47.0
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEE-----------EecCCc-EEEEeCCCCCEEEE
Q 013881 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAI-----------QLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~-----------~~spdg-~l~s~~~dg~i~iw 425 (434)
..-+.|.|.-.++-++.++-.++.|++....+........|...++.+ ..|||| .|++++.||.+++|
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 345556665555567888888899998777654332111233332222 378999 99999999999999
Q ss_pred Ecc
Q 013881 426 QWC 428 (434)
Q Consensus 426 d~~ 428 (434)
.+.
T Consensus 263 Qiy 265 (1283)
T KOG1916|consen 263 QIY 265 (1283)
T ss_pred eee
Confidence 875
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.48 E-value=53 Score=31.11 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=34.6
Q ss_pred EEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecC-ccceEEEEEECCCEEEEecCC-----------CcEEEEeCC
Q 013881 235 MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVGANKLYSGSMD-----------NSIRVWNLE 301 (434)
Q Consensus 235 l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~ 301 (434)
..+... +++.|..+..+.++|+......+..+..+.. .......+..++...+.|+.. ..+..||..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 333333 3334444555777777543322333333221 111223344556666666643 247788987
Q ss_pred CCeE
Q 013881 302 TLQC 305 (434)
Q Consensus 302 ~~~~ 305 (434)
+.+-
T Consensus 115 ~n~W 118 (376)
T PRK14131 115 TNSW 118 (376)
T ss_pred CCEE
Confidence 7543
No 469
>PLN02153 epithiospecifier protein
Probab=80.42 E-value=50 Score=30.75 Aligned_cols=63 Identities=8% Similarity=0.139 Sum_probs=33.0
Q ss_pred ECCCEEEEecCC-----------CcEEEEeCCCCeEEEEEcc------ccccEEEEEEcCCEEEEEeCC-----------
Q 013881 281 VGANKLYSGSMD-----------NSIRVWNLETLQCIQTLTE------HTSVVMSLLCWDQFLLSCSLD----------- 332 (434)
Q Consensus 281 ~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~------~~~~v~~l~~~~~~l~s~s~d----------- 332 (434)
.++..++.|+.+ ..|.+||+.+.+-.. +.. .........+.++.++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccce
Confidence 345556666643 247788987754322 111 111122334456655555432
Q ss_pred --CcEEEEEcCCCC
Q 013881 333 --KTIKVWFATDSG 344 (434)
Q Consensus 333 --g~i~vwd~~~~~ 344 (434)
..+.+||+.+.+
T Consensus 215 ~~~~v~~yd~~~~~ 228 (341)
T PLN02153 215 ESNAVQFFDPASGK 228 (341)
T ss_pred ecCceEEEEcCCCc
Confidence 458888887654
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.03 E-value=54 Score=30.94 Aligned_cols=142 Identities=11% Similarity=0.122 Sum_probs=81.6
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEE------EEcCCE--EEEEeC-C---CcEEEEEcCCC-CceEEEe
Q 013881 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL------LCWDQF--LLSCSL-D---KTIKVWFATDS-GNLEVTY 350 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l------~~~~~~--l~s~s~-d---g~i~vwd~~~~-~~~~~~~ 350 (434)
.+++....++-+.+||+. |+.++.+.. +....+ ...++. |+.++. + .+|++|.+... ..+..+.
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 467778888999999986 455666642 233322 233432 444443 2 46999988632 2233222
Q ss_pred ee-----cCCccEEEEEeccCCC-CCcEEEEEeCCCeEEEEeCC---CC----cccccccccCcEEEEEecCCc-EEEEe
Q 013881 351 TH-----NEEHGVLALCGMPDSE-GKPVLLCSCNDNSVRFYDLP---SF----AERGKIFAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 351 ~~-----~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~v~~~~~spdg-~l~s~ 416 (434)
.. .....+..+|...... +..++++...+|.+..|.+. .+ +++.++....++..+...... .|..+
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG 225 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence 11 1112356666654433 44577778889999888874 22 345566667788888888777 88888
Q ss_pred CCCCCEEEEEcc
Q 013881 417 DGTGQVRVWQWC 428 (434)
Q Consensus 417 ~~dg~i~iwd~~ 428 (434)
-++--|.-|+.+
T Consensus 226 EE~~GIW~y~Ae 237 (381)
T PF02333_consen 226 EEDVGIWRYDAE 237 (381)
T ss_dssp ETTTEEEEEESS
T ss_pred cCccEEEEEecC
Confidence 888655555554
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.57 E-value=48 Score=30.06 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=77.0
Q ss_pred cEEEEeCCCCeEEEEEccc------cccEEEEEEcC-------CEEEEE-eCCCcEEEEEcCCCCceEEEeeecC-----
Q 013881 294 SIRVWNLETLQCIQTLTEH------TSVVMSLLCWD-------QFLLSC-SLDKTIKVWFATDSGNLEVTYTHNE----- 354 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~------~~~v~~l~~~~-------~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~----- 354 (434)
+|.+||+.+.+.++++.-. .+.+..+.++. .++..+ +..+.|.|+|+.+++..+.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778999999888776532 45567777762 233333 3346899999988765444332211
Q ss_pred ------------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc--------c------ccccc-cCcEEEEEe
Q 013881 355 ------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE--------R------GKIFA-KQEIRAIQL 407 (434)
Q Consensus 355 ------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~------~~~~~-~~~v~~~~~ 407 (434)
...+..++..+..++++.|.-..-.+ -++|.+++..+ . ..+.. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12255556555444444555444322 23443332110 0 11111 235677889
Q ss_pred cCCc-EEEEeCCCCCEEEEEccC
Q 013881 408 GPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
+++| ++++--..+.|..|+..+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCCcEEEecCCCCeEEEEeCCC
Confidence 9999 888888999999999876
No 472
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.48 E-value=69 Score=31.80 Aligned_cols=225 Identities=12% Similarity=0.113 Sum_probs=115.9
Q ss_pred CCcEEEecCCCeEEEEeCCCCce-EEEEecCc-cccEEEEEccCCC-CEEEEEEC--CCcEEEEECCCCceEEEEecCCc
Q 013881 119 QGNCMYGEKCKFLHSWTVGDGFK-LLTQLEGH-QKVVSGITLPSGS-DKLYSGSK--DETVRVWDCASGQCAGVINLGGE 193 (434)
Q Consensus 119 ~~~~~~g~~d~~i~vwd~~~~~~-~~~~l~~h-~~~V~~l~~s~~~-~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~ 193 (434)
.+.++.+..+|.|+.-.+..... +....-+. ....+++.+-.++ .+|+.||. |+.+..|....-+.+..+..-++
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~P 301 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGP 301 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----S
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCC
Confidence 34588899999998887765311 11222222 4455666665444 47777776 55566666555566777766666
Q ss_pred eEEEEe------CC-------CEEEEE---cCCcEEEEECCCCc---eE---EecCCCCcEEEEEEeC--C-EEEEEeCC
Q 013881 194 VGCMIS------EG-------PWIFIG---VTNFVKAWNTQTNT---DL---SLSGPVGQVYAMAVGN--D-LLFAGTQD 248 (434)
Q Consensus 194 ~~~~~~------~~-------~~l~~~---~~~~i~~w~~~~~~---~~---~~~~~~~~v~~l~~~~--~-~l~~g~~d 248 (434)
+..+.. .. .+++++ .+|.+++....-+. .. .+.+ ...++.+.... + +|+.+..+
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESS
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCC
Confidence 655532 11 334443 35677776432221 11 2222 45666666554 3 56555554
Q ss_pred CcEEEEEcCC--CCCccccce--eecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEcC
Q 013881 249 GAILAWKFNV--TTNCFEPAA--SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWD 323 (434)
Q Consensus 249 g~i~vwd~~~--~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~~ 323 (434)
.-+++.+.. .....+.+. .+......+.+-.+.++.++=... ..|++.+....+....... ....|.+.+..+
T Consensus 381 -~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~ 458 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIND 458 (504)
T ss_dssp -EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEESS
T ss_pred -ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEECC
Confidence 444555541 111000010 122222333333344555554443 3588888887777766543 455677777778
Q ss_pred CEEEEEeCCCcEEEEEcCCCCce
Q 013881 324 QFLLSCSLDKTIKVWFATDSGNL 346 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~~~~ 346 (434)
.+++.+..++.+.++.+......
T Consensus 459 ~~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 459 PQVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEE
T ss_pred CEEEEEEeCCcEEEEEEECCcee
Confidence 88888888999999988766543
No 473
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=79.22 E-value=71 Score=31.80 Aligned_cols=142 Identities=13% Similarity=0.169 Sum_probs=79.2
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCC---CCceEEEEecCccccEEEEEccCC----CCEEEEEECCCcEEEEECCC--
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVG---DGFKLLTQLEGHQKVVSGITLPSG----SDKLYSGSKDETVRVWDCAS-- 181 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~---~~~~~~~~l~~h~~~V~~l~~s~~----~~~l~s~s~dg~v~iwd~~~-- 181 (434)
|+.-++|-++..+.-.. +++-+-+ .....+.+| +-|..++|.|- ...|++......|.||.+..
T Consensus 21 PvhGlaWTDGkqVvLT~---L~l~~gE~kfGds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTD---LQLHNGEPKFGDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEe---eeeeCCccccCCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 78889998876543220 2222211 011334333 46899999883 44566677778899999862
Q ss_pred ---CceE--EEEecCCc-----eEEEE-eCCCEEEEEcCCcE-EEEECCCCc--eEEecCCCCcEEEEEEeCC---EEEE
Q 013881 182 ---GQCA--GVINLGGE-----VGCMI-SEGPWIFIGVTNFV-KAWNTQTNT--DLSLSGPVGQVYAMAVGND---LLFA 244 (434)
Q Consensus 182 ---~~~~--~~~~~~~~-----~~~~~-~~~~~l~~~~~~~i-~~w~~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~ 244 (434)
.+.+ ++.+..++ -.|+. +....|++-....+ .++++.... ...-....+.|.|.+|..| ++++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 2222 22222221 23443 35556666554444 334443322 2222356788999999988 4444
Q ss_pred EeCCCcEEEEEcCCC
Q 013881 245 GTQDGAILAWKFNVT 259 (434)
Q Consensus 245 g~~dg~i~vwd~~~~ 259 (434)
.+..=.-++||-...
T Consensus 174 vGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 174 VGSSLHSYIWDSAQK 188 (671)
T ss_pred eCCeEEEEEecCchh
Confidence 444556788886554
No 474
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=79.11 E-value=6 Score=23.34 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=13.7
Q ss_pred EEEcCCEEEEEeCCCcEEEEEcC
Q 013881 319 LLCWDQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 319 l~~~~~~l~s~s~dg~i~vwd~~ 341 (434)
+...++.++.++.||.+..+|.+
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT
T ss_pred CEEECCEEEEEcCCCEEEEEeCC
Confidence 34456667777777777776654
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.09 E-value=54 Score=29.78 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=85.1
Q ss_pred EEEEEeCCCcEEEEEcCCCCCcc-ccceeec-CccceE-EEEEE--C--CCEEEEec-CCCcEEEEeCCCCeEE--EEEc
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCF-EPAASLK-GHSLAV-VSLVV--G--ANKLYSGS-MDNSIRVWNLETLQCI--QTLT 310 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~-~h~~~v-~~l~~--~--~~~l~s~s-~dg~i~vwd~~~~~~~--~~~~ 310 (434)
.++.+++||+|.-|........+ .....+. .....| ..+++ . +++|+.+. ..++|.|||-.-.+.. ..+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 57888999999999865442200 0111111 112233 23333 2 45665554 5788999985432221 0111
Q ss_pred cc-----cccEEEEEEc-CCEEE-------------EEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC---CC
Q 013881 311 EH-----TSVVMSLLCW-DQFLL-------------SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD---SE 368 (434)
Q Consensus 311 ~~-----~~~v~~l~~~-~~~l~-------------s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 368 (434)
.. -.+ .-+.-- +++++ .+..-|.|-+||+. +..++.+.....-..-+.++..|. .-
T Consensus 182 DP~iPagyAP-FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAP-FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCC-cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 10 001 111111 22222 23334688999874 444444433222223334443331 11
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcccccccc-------cCcEEEEEecC
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIFA-------KQEIRAIQLGP 409 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~sp 409 (434)
.+.+|+---.||+|..||..+++.+..+.. ...++.|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 223566556799999999999887777653 34478888865
No 476
>PLN02193 nitrile-specifier protein
Probab=77.82 E-value=74 Score=31.26 Aligned_cols=132 Identities=8% Similarity=0.087 Sum_probs=64.9
Q ss_pred cEEEEECCCCceEEecC---C-C-C--cEEEEEEeCCEEEEEeCC-----CcEEEEEcCCCCCccccceeec---Cccce
Q 013881 211 FVKAWNTQTNTDLSLSG---P-V-G--QVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLK---GHSLA 275 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~---~-~-~--~v~~l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~---~h~~~ 275 (434)
.+..||+.+.+-..+.. . . . ....+.....+.+.|+.+ ..+.+||+.+.. +..+..+. .....
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSF 271 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccc
Confidence 46778888766543221 1 1 1 112223333366666654 357778876542 22222221 11111
Q ss_pred EEEEEECCCEEEEecCCC-----cEEEEeCCCCeEEEEEc-----cccccEEEEEEcCCEEEEEeCC----CcEEEEEcC
Q 013881 276 VVSLVVGANKLYSGSMDN-----SIRVWNLETLQCIQTLT-----EHTSVVMSLLCWDQFLLSCSLD----KTIKVWFAT 341 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~l~s~s~d----g~i~vwd~~ 341 (434)
......++..++.|+.++ .+..||+.+.+-...-. .....-..+.+.++.++.++.+ ..+.+||+.
T Consensus 272 h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 272 HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECC
Confidence 122334555666666543 46788887754322110 1111122334456777777655 458899987
Q ss_pred CCC
Q 013881 342 DSG 344 (434)
Q Consensus 342 ~~~ 344 (434)
+..
T Consensus 352 t~~ 354 (470)
T PLN02193 352 QDK 354 (470)
T ss_pred CCE
Confidence 654
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=97 Score=32.85 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred ceE-EEEEeCCcEEEecCCCeEEEEeCCCC------------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 111 DIL-CRNWVQGNCMYGEKCKFLHSWTVGDG------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 111 ~i~-c~~~~~~~~~~g~~d~~i~vwd~~~~------------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
.+. |++-..+.++.|+.+|.+++|.+... .+....+. +.+|..|...+.-.+++.-+..+ |.++
T Consensus 17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~--kk~i~~l~~~~~~~~ll~l~dsq-i~~~ 93 (877)
T KOG2063|consen 17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS--KKPINKLLVCASLELLLILSDSQ-IAVH 93 (877)
T ss_pred ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc--cchhHHHhhcchhcchheecCCc-ceee
Q ss_pred ECCCCceEEEEecCCceEEEEe-----CCC----EEEEEcCCcEEEEECCCCceE---EecCCCCcEEEEEEeCCEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMIS-----EGP----WIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAG 245 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~-----~~~----~l~~~~~~~i~~w~~~~~~~~---~~~~~~~~v~~l~~~~~~l~~g 245 (434)
++.+-+.......-........ .++ .+.+.....+..+-....... .-.+-.....+++|....+.++
T Consensus 94 ~l~~~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~ 173 (877)
T KOG2063|consen 94 KLPELEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLG 173 (877)
T ss_pred ecCcccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEe
Q ss_pred eCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCE
Q 013881 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF 325 (434)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 325 (434)
-.+....++...++....-.......-..+..-..+..+..+..+.|+...+-|.........--.-.....++.+..-|
T Consensus 174 ~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~PY 253 (877)
T KOG2063|consen 174 LKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVESPY 253 (877)
T ss_pred ecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEecccchhhcccCce
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
+++-+.. .|.||+..+...++.+..........+. ....+++.+..+...+
T Consensus 254 lIa~~~~-~veI~s~~~~qlvQSI~~~~~~~~l~s~-------~~~i~~~~~~s~v~~L 304 (877)
T KOG2063|consen 254 LIALLDR-SVEIRSKLDGQLVQSITPLSNGRSLLSA-------HNGIIFVASLSNVWIL 304 (877)
T ss_pred EEEEccc-cEEEEeccCHHHhhccccccccceeeec-------CCcEEEEEeccceEEE
No 478
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.59 E-value=7.3 Score=22.73 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEEcc
Q 013881 285 KLYSGSMDNSIRVWNLETLQCIQTLTE 311 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~~~~~~~ 311 (434)
.++.++.||.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668888888888888888877653
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.34 E-value=69 Score=30.64 Aligned_cols=147 Identities=8% Similarity=0.009 Sum_probs=0.0
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCc-eEEEEecCCceEEEEe--CCCEEEEEcCCcEEEEECCCC------
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTN------ 220 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~------ 220 (434)
.+....+..++++.+++.+..-..++-||-.... ..........+..+.+ ++.+++++..+.+..-+-...
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc
Q ss_pred -ceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEE
Q 013881 221 -TDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRV 297 (434)
Q Consensus 221 -~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~v 297 (434)
...........+.++.+.++ .+++++..|.+... ..+...++.......-......+.|.+ +..+..+.+|.|.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Q ss_pred E
Q 013881 298 W 298 (434)
Q Consensus 298 w 298 (434)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=76.76 E-value=61 Score=29.67 Aligned_cols=33 Identities=3% Similarity=0.011 Sum_probs=22.8
Q ss_pred cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 399 KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 399 ~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.....++++... +|++-.. ..|.|+++.+++++
T Consensus 243 ~~~p~~~~~~~p-yll~~~~-~~ievr~l~~~~l~ 275 (302)
T smart00036 243 EFMPESFAYHSP-YLLAFHD-NGIEIRSIKTGELL 275 (302)
T ss_pred CCcccEEEEECC-EEEEEcC-CcEEEEECCCCceE
Confidence 455677777743 5555554 45999999998764
No 481
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=75.97 E-value=13 Score=38.21 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=85.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEE--------eCCCCeEEEEEccc
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVW--------NLETLQCIQTLTEH 312 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw--------d~~~~~~~~~~~~~ 312 (434)
.+..|++++.|.++.-...................+.++.+....+..|.-||++-.+ |.. +...+...
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~e---p~~~~~~g 625 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGE---PNISIPTG 625 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCC---CccccccC
Confidence 7888999999999976643322222223333455677777776666666666666544 433 33333444
Q ss_pred cccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC-ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 313 TSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 313 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
..+|.+.++..+.++ ++.+|.|.++...+.........+..+ ..|..+.+. ..+-+++..+ ...++.++..+..
T Consensus 626 ~lPvrsla~~ed~~w-as~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~---~~gVwvafas-G~~~rlfhtetl~ 700 (925)
T KOG3522|consen 626 SLPVRSLAFQEDFVW-ASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYL---DNGVWVAFAS-GDEERLFHTETLW 700 (925)
T ss_pred Cccccchhhhhceee-eecCCceEEEechhccccchhHHHHhhcceEEEEEee---CCceEEEEcC-CCEEEEecccccC
Confidence 566777777666554 567999999998877655555554433 234444433 2332344333 3356666666654
Q ss_pred cccc
Q 013881 392 ERGK 395 (434)
Q Consensus 392 ~~~~ 395 (434)
....
T Consensus 701 hlqd 704 (925)
T KOG3522|consen 701 HLQD 704 (925)
T ss_pred Cccc
Confidence 4433
No 482
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.75 E-value=1.1e+02 Score=32.25 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=86.0
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEE
Q 013881 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 230 ~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
.+...++|+|. .||+....|...||++........ +..-+.....|.| ++|....
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~------------------~~~~~~~~~~gsi-~~d~~e~--- 203 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS------------------SNLRLSRNISGSI-IFDPEEL--- 203 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCC------------------cceeeccCCCccc-cCCCccc---
Confidence 35667888876 888889999999999832211000 0111222222333 2332211
Q ss_pred EEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 307 QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 307 ~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
..-..+.|. .+.|++++ ...+.++|+.+......+........+..+.-++..++.-+|+|. ..|..
T Consensus 204 -------s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw 272 (765)
T PF10214_consen 204 -------SNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIW 272 (765)
T ss_pred -------CcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEE
Confidence 223345554 23555554 457788888876554434444445678888877765544344433 56777
Q ss_pred EeCCCC----cccccccc----cCc---EEEEEecCCc--EEEEeCCCCCEEEEEc
Q 013881 385 YDLPSF----AERGKIFA----KQE---IRAIQLGPGG--LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 385 wd~~~~----~~~~~~~~----~~~---v~~~~~spdg--~l~s~~~dg~i~iwd~ 427 (434)
.++... +.+....| .+. +.......+. .++..-....|.+|.+
T Consensus 273 ~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 273 LDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE
Confidence 777662 33333444 121 1111121222 3444555667777776
No 483
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=75.74 E-value=64 Score=29.48 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcC---------------------CcEEEEECCC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT---------------------NFVKAWNTQT 219 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~i~~w~~~~ 219 (434)
++++-++=+..|.|.-+|.++|+.......++....+.+.+.+++++.+ ..|.+.|+.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~t 291 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNS 291 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCC
Confidence 6777888888899999999989877777777777777777888877643 1356667777
Q ss_pred CceE---EecCCCCcEEEEEEeCC
Q 013881 220 NTDL---SLSGPVGQVYAMAVGND 240 (434)
Q Consensus 220 ~~~~---~~~~~~~~v~~l~~~~~ 240 (434)
+..+ .+.+-..++++++.-|.
T Consensus 292 G~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 292 GDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCEEEEEEeCCceeEEEEEEEecC
Confidence 7654 45555566666666555
No 484
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=75.58 E-value=89 Score=31.01 Aligned_cols=265 Identities=13% Similarity=0.127 Sum_probs=130.6
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC--ceEEEE-eCCCEEEEEcCCcEEEEECCCCceEE--
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDLS-- 224 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~i~~w~~~~~~~~~-- 224 (434)
...|.++.+...+. |..|+.|| +..+|..+++.++.-.... .+..+. .-..-+.++++.-+.+.+.+......
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~ 241 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWG 241 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccC
Confidence 45788888887774 67788888 7888888887766544332 233332 24455667777777777777743331
Q ss_pred ecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCC
Q 013881 225 LSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 225 ~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~ 302 (434)
..-....|..+.-+.. .+-.|++.|..+.--.+.+- . .+........+.|.++..+. ..|.+++.++.+++-+-.
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~L-q-~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~- 318 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGL-Q-IPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD- 318 (671)
T ss_pred CCCcchheeeeecccCCCEEEeecccceeEecCCCCc-c-ccccccCCccccccceeeccCCCEeeeccCceEEEecch-
Confidence 2224455555555444 77777777755433222211 0 11111111233456666653 357777777766654422
Q ss_pred CeEEEEEccccccE---EEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe
Q 013881 303 LQCIQTLTEHTSVV---MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (434)
Q Consensus 303 ~~~~~~~~~~~~~v---~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (434)
......+....+.+ ...+.. +..+--...-|.+.+-+-.++..+........ ..+..+++.. ++ .+-.|+
T Consensus 319 w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg-~nit~~~~d~---~g-~lWlgs 393 (671)
T COG3292 319 WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG-MNITTTLEDS---RG-RLWLGS 393 (671)
T ss_pred hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc-cccchhhhcc---CC-cEEEEe
Confidence 12211121111111 111110 11111111112222222223333333222221 2233333322 22 355566
Q ss_pred CCCeEEEEeCCC-Cccccccc--ccCcEEEEEecCCcEEEEeCCCCCEEE
Q 013881 378 NDNSVRFYDLPS-FAERGKIF--AKQEIRAIQLGPGGLFFTGDGTGQVRV 424 (434)
Q Consensus 378 ~dg~i~iwd~~~-~~~~~~~~--~~~~v~~~~~spdg~l~s~~~dg~i~i 424 (434)
..+-+..|+..+ +....... ..++|.+|.=.|++.|..|+.+|.++.
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 554566666665 22222222 267788888888887888888886553
No 485
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=74.71 E-value=70 Score=29.37 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=91.2
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEE--EeCCCEEEEEcCCcEEEEECCCCce-EEec-----CC
Q 013881 158 LPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTD-LSLS-----GP 228 (434)
Q Consensus 158 ~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~~w~~~~~~~-~~~~-----~~ 228 (434)
|.++.. ++.+--..+.|.-|+..+++. ..+..+..+.+. ...+..|++ .+..+.+++.+.+.. ..+. ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~-~~~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIA-CEHGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEE-EccccEEEeccCCceeEEeccccCCCC
Confidence 566555 444555567788888876643 233333333332 223334443 344445555554444 2111 12
Q ss_pred CCcEEEEEEeCC-EEEEEeCC------------CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEec-CC
Q 013881 229 VGQVYAMAVGND-LLFAGTQD------------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-MD 292 (434)
Q Consensus 229 ~~~v~~l~~~~~-~l~~g~~d------------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~d 292 (434)
....+.+...++ .+..++.. |.|+.++. .+ .....+..+-..-..|+|+ ++.|+.+. ..
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g----~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG----GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC----CEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 244556666666 44444333 32333332 22 2333344444444667776 44555554 45
Q ss_pred CcEEEEeCCC--C----eE-EEEEccccccEEEEEEc--CCEEEEEeCCC-cEEEEEcCCCCceEEEeee
Q 013881 293 NSIRVWNLET--L----QC-IQTLTEHTSVVMSLLCW--DQFLLSCSLDK-TIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 293 g~i~vwd~~~--~----~~-~~~~~~~~~~v~~l~~~--~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~ 352 (434)
+.|.-|++.. + +. ...+....+..-.++.+ +.+.+++..+| .|.+|+.. ++.+..+...
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 8888887752 1 11 11122223333344444 55554444444 89999887 5555555444
No 486
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.67 E-value=13 Score=21.55 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=20.0
Q ss_pred ecCccccEEEEEccCCCCEEEEEE-CC--CcEEEE
Q 013881 146 LEGHQKVVSGITLPSGSDKLYSGS-KD--ETVRVW 177 (434)
Q Consensus 146 l~~h~~~V~~l~~s~~~~~l~s~s-~d--g~v~iw 177 (434)
+......-...+|+|||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999998877554 44 555554
No 487
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.32 E-value=9.3 Score=20.52 Aligned_cols=23 Identities=9% Similarity=0.300 Sum_probs=12.3
Q ss_pred EEEEEECCCEEEEecCCCcEEEE
Q 013881 276 VVSLVVGANKLYSGSMDNSIRVW 298 (434)
Q Consensus 276 v~~l~~~~~~l~s~s~dg~i~vw 298 (434)
|.+++..+++++.+...+.+|+|
T Consensus 4 i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 4 IEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEccCCEEEEEeCCCeEEec
Confidence 44555555555555555555554
No 488
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=74.21 E-value=82 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.0
Q ss_pred ccccEEEEEccCCC-----CEEEEEECCCcEEEEECCCCceEEE
Q 013881 149 HQKVVSGITLPSGS-----DKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 149 h~~~V~~l~~s~~~-----~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
|...|.+++.+-+. +.+..-+.-+.|-+|+..+++....
T Consensus 217 ~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~Igvw~~~t~q~~d~ 260 (465)
T KOG2714|consen 217 TVKGVFSLAVSVDPLFFIGTQLVALSSVGKIGVWHAVTQQAQDV 260 (465)
T ss_pred ceEEEEeecccccchhhhhhhhhhccccccccccchhhhceeee
Confidence 44556666654433 3444556678899999888844433
No 489
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=73.76 E-value=73 Score=29.16 Aligned_cols=227 Identities=12% Similarity=0.039 Sum_probs=104.6
Q ss_pred CCCEEEEEECCCcEEEEECCC--CceEEEEecCCceEEE--EeCCCEEEEEcCCc--EEEEECCCCce------------
Q 013881 161 GSDKLYSGSKDETVRVWDCAS--GQCAGVINLGGEVGCM--ISEGPWIFIGVTNF--VKAWNTQTNTD------------ 222 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~--i~~w~~~~~~~------------ 222 (434)
++++|+.|..+| +.+-++.. .+..+.+. ...+.++ .....+|++-.++. ++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~-~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIG-RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecC-cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 346899999999 55556654 23333333 3344444 34555555555544 99998733221
Q ss_pred ----EEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceee---c-CccceEEEEE----ECCCEEE
Q 013881 223 ----LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL---K-GHSLAVVSLV----VGANKLY 287 (434)
Q Consensus 223 ----~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---~-~h~~~v~~l~----~~~~~l~ 287 (434)
.....+............ .++++....+|.++........+.....+ . .-..++..+. +....+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 112233333333333222 44555556677776554332222222221 0 1112222222 2244677
Q ss_pred EecCCCcEEEEeCCC--CeEEE-----EEcccc-ccEEEEEEcCCEEEEEeCCCcEEEEEcCC-CCceEEEeeecCCccE
Q 013881 288 SGSMDNSIRVWNLET--LQCIQ-----TLTEHT-SVVMSLLCWDQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGV 358 (434)
Q Consensus 288 s~s~dg~i~vwd~~~--~~~~~-----~~~~~~-~~v~~l~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~ 358 (434)
.|+..+...++++.. ...-. ...... .++..+....+.++.+-.+ ...+-|... .......... ....
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w--~~~p 246 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW--EFMP 246 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc--CCcc
Confidence 776643344444432 11000 000111 3455555555555555443 344444432 1111111111 1223
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
.++++. .+ +|+.-. +..|.|+++.+++.+..+.+
T Consensus 247 ~~~~~~--~p---yll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYH--SP---YLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEE--CC---EEEEEc-CCcEEEEECCCCceEEEEec
Confidence 344443 23 555544 56699999999988777654
No 490
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=73.52 E-value=1.2e+02 Score=31.64 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCc--eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 128 CKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 128 d~~i~vwd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
.|.+-+=|..+.+ +.+..|.|| .|.+|+.+.+..+++| .+|.|.-|-+.....+..
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh--~~~qisvs~~HslvLT--~~g~Vys~GlN~~hqLG~ 263 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGH--KVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQLGL 263 (1267)
T ss_pred CCccCcCccccccccccccccccc--ceEEEEeecceeEEEe--ecceEEEeecCcccccCC
Confidence 3444443444332 224445666 5778888776665554 688899998876554433
No 491
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=71.95 E-value=1.6e+02 Score=32.23 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred EEEEecC---------CCcEEEEeCCC-----CeE-----EEEE--ccccccEEEEEEcCCEEEEEeCCCcEEEEEcCC-
Q 013881 285 KLYSGSM---------DNSIRVWNLET-----LQC-----IQTL--TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATD- 342 (434)
Q Consensus 285 ~l~s~s~---------dg~i~vwd~~~-----~~~-----~~~~--~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~- 342 (434)
+|++|.. -|.+.++|+-. +++ ++.+ +..+++|.+++--..+|+++. ..+|.||++..
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRD 1126 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccC
Confidence 6776643 38899999732 322 2222 245678888776666666654 46899999944
Q ss_pred CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCc---EEEE
Q 013881 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGG---LFFT 415 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg---~l~s 415 (434)
...+..-+ ......+.++.. =+++|+.|.--..|.+.-.........+. ..-.+.++.|--|| .+++
T Consensus 1127 ~~ligVaF-iD~~~yv~s~~~-----vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1127 SELIGVAF-IDLPLYVHSMKV-----VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred CcceeeEE-eccceeEEehhh-----hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 43333322 222223333322 12277777766777776554432222222 23457888887777 8899
Q ss_pred eCCCCCEEEEEccCCc
Q 013881 416 GDGTGQVRVWQWCNGP 431 (434)
Q Consensus 416 ~~~dg~i~iwd~~~g~ 431 (434)
++.|+.|+++-..-..
T Consensus 1201 sDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1201 SDADRNIHVYMYAPEN 1216 (1366)
T ss_pred EcCCCcEEEEEeCCCC
Confidence 9999999999876543
No 492
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=71.22 E-value=9.2 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEECCCEEEEecCCCcEEEEeCCC
Q 013881 279 LVVGANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 279 l~~~~~~l~s~s~dg~i~vwd~~~ 302 (434)
+...++.++.++.||.|+.+|.++
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 466788999999999999999864
No 493
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.23 E-value=39 Score=32.32 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=83.5
Q ss_pred cceEEEEE--ECCCEEEEecCCCcEEEEeCCCCeEE-EEEc-cccc----cEE-EEE-Ec-CCEEEEEeCCCcEEEE-Ec
Q 013881 273 SLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCI-QTLT-EHTS----VVM-SLL-CW-DQFLLSCSLDKTIKVW-FA 340 (434)
Q Consensus 273 ~~~v~~l~--~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~-~~~~----~v~-~l~-~~-~~~l~s~s~dg~i~vw-d~ 340 (434)
...+..+- ++++.++.-+. ..+.++++.+.... +++- ...+ .|+ ++. .. +..+++++.||-|.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 33444443 35666555444 67888887654321 1111 1111 111 111 12 5678889999999888 55
Q ss_pred CCCCceEE--EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeC
Q 013881 341 TDSGNLEV--TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGD 417 (434)
Q Consensus 341 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~ 417 (434)
+....... ....+-. -..+.+..-..+.+-+++-+..|++.++.....+.+..-..-+.+.-+++||.+ +|++-
T Consensus 299 r~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE- 375 (733)
T ss_pred ecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-
Confidence 44433211 1111111 011112211334446778888999988876655444433334467788999999 77765
Q ss_pred CCCCEEEEEccCC
Q 013881 418 GTGQVRVWQWCNG 430 (434)
Q Consensus 418 ~dg~i~iwd~~~g 430 (434)
+.|.|+++.+++.
T Consensus 376 ~~gki~~~~l~Nr 388 (733)
T COG4590 376 DQGKIRLAQLENR 388 (733)
T ss_pred cCCceEEEEecCC
Confidence 4567999988764
No 494
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=69.23 E-value=2.3 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=14.3
Q ss_pred cCccCCCCCCcccccCC
Q 013881 43 AGKCNRFPCPYLHRELP 59 (434)
Q Consensus 43 ~~~~~~~~c~~l~~~~p 59 (434)
-|+|+.-|||.+|-+-.
T Consensus 25 vg~CSppPCPvi~veYk 41 (96)
T PF15500_consen 25 VGLCSPPPCPVIRVEYK 41 (96)
T ss_pred ccccCCCCCCchhHHHH
Confidence 48999999999987644
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.22 E-value=1.3e+02 Score=29.67 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=49.1
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEE
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 361 (434)
|..++..+.+|.+.++=.+..-.-..++.....|+|-.+. +..|++. .....+...
T Consensus 115 GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-----------------------s~~ltl~Qa 171 (741)
T KOG4460|consen 115 GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-----------------------STSLTLKQA 171 (741)
T ss_pred CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-----------------------CCceeeeec
Confidence 5677777777766554433322223333333344443332 2222222 122335566
Q ss_pred EeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
+|+|++-....|..-+.|+.|++||+...+.+..
T Consensus 172 ~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 172 AWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred cccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 7777663344677777889999999887665543
No 496
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.18 E-value=1.6 Score=41.08 Aligned_cols=30 Identities=33% Similarity=0.796 Sum_probs=24.7
Q ss_pred ccccceeeeeccCccCCCCCCcccccCCCC
Q 013881 32 DTRQKVCNYWRAGKCNRFPCPYLHRELPLP 61 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~c~~l~~~~p~~ 61 (434)
-.+..+|.||.+++|-+--|+|-|+++-.-
T Consensus 29 l~n~t~C~~w~~~~~C~k~C~YRHSe~~~k 58 (667)
T KOG4791|consen 29 LGNETVCTLWQEGRCCRKVCRYRHSEIDKK 58 (667)
T ss_pred hcCcchhhhhhhcCcccccccchhhHHhhh
Confidence 346679999999999999999999887543
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=67.84 E-value=1.1e+02 Score=28.91 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=19.5
Q ss_pred cEEEEECCCCceEEecCCC---CcEEEEEEeCC-EEEEEeC
Q 013881 211 FVKAWNTQTNTDLSLSGPV---GQVYAMAVGND-LLFAGTQ 247 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~---~~v~~l~~~~~-~l~~g~~ 247 (434)
.+.+||..+.+-..+.... ..-.++....+ +.+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 5788998887765433211 11234444444 5555553
No 498
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=67.00 E-value=1.4e+02 Score=29.66 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=112.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCc---eEEEEec-CCceEEEE-eCCC--EEEEEc---CCcEEEEECCCCceEEecCC
Q 013881 159 PSGSDKLYSGSKDETVRVWDCASGQ---CAGVINL-GGEVGCMI-SEGP--WIFIGV---TNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 159 s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~-~~~~~~~~-~~~~--~l~~~~---~~~i~~w~~~~~~~~~~~~~ 228 (434)
..++..++-+..+|.+..-.+.... .+..+.. .....++. .++. +++++. |+.+..+....-+.+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4577889999999999888876544 1222221 12222232 2444 666654 34555555433333334445
Q ss_pred CCcEEEEEEeCC------------EEEEEe---CCCcEEEEEcCCCCC-ccccceeecCccceEEEEEEC---CCEEEEe
Q 013881 229 VGQVYAMAVGND------------LLFAGT---QDGAILAWKFNVTTN-CFEPAASLKGHSLAVVSLVVG---ANKLYSG 289 (434)
Q Consensus 229 ~~~v~~l~~~~~------------~l~~g~---~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~~---~~~l~s~ 289 (434)
-++|..++..+. .|++++ .+|.+++..-.-+.. .......+.+ ...+..+... ..+|+..
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 678888887422 445543 567888875432211 0011111222 3445555553 3456655
Q ss_pred cCCCcEEEEeCC---CCeEEEEEc-----cccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEE
Q 013881 290 SMDNSIRVWNLE---TLQCIQTLT-----EHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361 (434)
Q Consensus 290 s~dg~i~vwd~~---~~~~~~~~~-----~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 361 (434)
..+. -+++.+. ..+.+..+. .....+.+-.+.++.++=.+. ..|++.+............ .....+.+.
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~-~~i~l~~~~~~~~~~~w~~-~~~~~I~~a 454 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP-KGIRLIDLEDGKLTQEWKP-PAGSIIVAA 454 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES-SEEEEEESSSTSEEEEEE--TTS---SEE
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec-CeEEEEECCCCeEEEEEeC-CCCCeEEEE
Confidence 5443 3344442 233332221 112222222233555555554 4578887765544333222 233334443
Q ss_pred EeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc------cccCcEEEEEecC
Q 013881 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI------FAKQEIRAIQLGP 409 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~sp 409 (434)
+.. ++ +++.+..++.+..+.+......... ....+|.++...|
T Consensus 455 ~~~--~~---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SIN--DP---QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EES--SS---EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEC--CC---EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 332 22 6777777899999988776553222 1467888888776
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=66.95 E-value=99 Score=27.95 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEe-------CCCcEEEEEcCCCCceEEEee-e--cCCccEEE
Q 013881 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCS-------LDKTIKVWFATDSGNLEVTYT-H--NEEHGVLA 360 (434)
Q Consensus 292 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~-~--~~~~~~~~ 360 (434)
-..|.+||..+.+-...-.+-.+.|+++.|. ++.|+.++ ....+..||+.+..- ..+.. . .-..++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 3469999988877666555667889999986 55544443 355688898876532 22222 1 11245666
Q ss_pred EEeccCCCCCcEEEEEe-C--CCeEEEEeCCCCccccc
Q 013881 361 LCGMPDSEGKPVLLCSC-N--DNSVRFYDLPSFAERGK 395 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~ 395 (434)
+.+...... .+.+.|. . +..|..||=.+...+..
T Consensus 94 ~~~~~~d~~-~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGS-NFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EEeeccCCc-eEEEeceecCCCceEEEEcCCceEeccc
Confidence 655443332 2444444 2 33567777665555544
No 500
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.80 E-value=1e+02 Score=28.15 Aligned_cols=263 Identities=13% Similarity=0.083 Sum_probs=112.6
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE--ecCC----ceEEEEeC-CCEEEEEcCCcEEEEECCCCc
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGG----EVGCMISE-GPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~----~~~~~~~~-~~~l~~~~~~~i~~w~~~~~~ 221 (434)
-...+.+|.|..+..-++.| ..++| +-..+.|+.=... .... ....+.+. ....+++.. .+.+...+.++
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-g~ll~T~DgG~ 91 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-GLLLHTTDGGK 91 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-TEEEEESSTTS
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-ceEEEecCCCC
Confidence 34689999998544445544 45543 2222223211111 1111 23344443 333344443 44555555555
Q ss_pred eEEe---c-CCCCcEEEE-EEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 222 DLSL---S-GPVGQVYAM-AVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 222 ~~~~---~-~~~~~v~~l-~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
.... . .-.+....+ ...+..+..++..|.| |....+...++.+ ...-...+..+... +.+++++..-..
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~i--y~T~DgG~tW~~~--~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAI--YRTTDGGKTWQAV--VSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--E--EEESSTTSSEEEE--E-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcE--EEeCCCCCCeeEc--ccCCcceeEeEEECCCCcEEEEECcccE
Confidence 4321 1 122333333 3344444444555554 4444443333322 23334556666553 556666665555
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEee-----ecCCccEEEEEeccCCC
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT-----HNEEHGVLALCGMPDSE 368 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 368 (434)
..-||.-...-...-......|.++.|. ...|......|.|++=+.... ...... ......++.+++.+...
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCCC
Confidence 6678765322222223346788999888 345545668888888762211 111111 12234578888876543
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCcEEEEeCCCCCEEEE
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGGLFFTGDGTGQVRVW 425 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg~l~s~~~dg~i~iw 425 (434)
+.++| ..|.+. ...+.++.-.+.. ....+..|.|.++..-++-+.+|.|.-|
T Consensus 246 ---~wa~g-g~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 ---IWAVG-GSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEEE-STT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ---EEEEe-CCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 55544 455443 3444444333222 2456788888766655555677877654
Done!