Query 013881
Match_columns 434
No_of_seqs 1007 out of 2376
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 8.4E-43 2.9E-47 333.9 37.3 278 104-428 103-410 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.2E-41 4.1E-46 317.7 40.1 283 103-426 49-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 6.4E-42 2.2E-46 316.8 37.8 278 105-428 28-320 (321)
4 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-40 5.8E-45 321.5 45.6 314 105-430 114-443 (445)
5 3frx_A Guanine nucleotide-bind 100.0 8.8E-41 3E-45 309.0 38.6 277 105-430 13-318 (319)
6 1nr0_A Actin interacting prote 100.0 4E-40 1.4E-44 331.4 45.9 318 104-431 142-569 (611)
7 4gqb_B Methylosome protein 50; 100.0 2.4E-41 8.1E-46 315.6 33.8 284 108-433 29-335 (344)
8 2pbi_B Guanine nucleotide-bind 100.0 9.7E-41 3.3E-45 313.2 37.6 285 103-426 58-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 1.6E-41 5.3E-46 321.9 29.1 290 105-432 62-378 (380)
10 2ynn_A Coatomer subunit beta'; 100.0 9.6E-40 3.3E-44 300.0 38.1 280 104-430 8-303 (304)
11 4g56_B MGC81050 protein; prote 100.0 2E-40 6.7E-45 311.5 33.4 296 122-430 19-344 (357)
12 2hes_X YDR267CP; beta-propelle 100.0 1.3E-39 4.6E-44 302.5 37.5 293 104-430 9-329 (330)
13 2xzm_R RACK1; ribosome, transl 100.0 2.1E-39 7.3E-44 302.9 37.7 282 104-431 16-342 (343)
14 4ery_A WD repeat-containing pr 100.0 1E-38 3.4E-43 294.2 39.3 280 105-428 19-311 (312)
15 2ymu_A WD-40 repeat protein; u 100.0 2.4E-38 8.3E-43 316.3 44.0 307 105-426 258-577 (577)
16 3v7d_B Cell division control p 100.0 4E-38 1.4E-42 306.4 43.6 310 105-427 117-461 (464)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-38 6.8E-43 296.5 39.7 287 106-432 12-338 (345)
18 4gga_A P55CDC, cell division c 100.0 1.4E-38 4.7E-43 305.8 39.6 291 93-430 87-396 (420)
19 1nr0_A Actin interacting prote 100.0 1.4E-38 4.9E-43 320.0 41.2 314 109-431 18-399 (611)
20 2ynn_A Coatomer subunit beta'; 100.0 6.6E-39 2.3E-43 294.4 35.2 250 141-433 4-263 (304)
21 1p22_A F-BOX/WD-repeat protein 100.0 6.7E-39 2.3E-43 309.4 35.5 293 90-432 114-417 (435)
22 4aow_A Guanine nucleotide-bind 100.0 4.9E-38 1.7E-42 292.5 38.9 280 105-431 34-339 (340)
23 1r5m_A SIR4-interacting protei 100.0 3.2E-38 1.1E-42 302.5 37.4 314 105-428 41-424 (425)
24 2ymu_A WD-40 repeat protein; u 100.0 6.9E-37 2.4E-41 305.7 44.8 308 105-428 217-538 (577)
25 4aez_A CDC20, WD repeat-contai 100.0 1.9E-37 6.4E-42 296.0 38.6 294 93-433 75-384 (401)
26 1erj_A Transcriptional repress 100.0 2.4E-37 8.1E-42 294.5 38.9 276 107-430 62-390 (393)
27 4ggc_A P55CDC, cell division c 100.0 6.3E-37 2.2E-41 282.2 38.1 291 93-430 7-316 (318)
28 1got_B GT-beta; complex (GTP-b 100.0 4.5E-37 1.5E-41 286.8 37.1 250 141-432 46-304 (340)
29 1vyh_C Platelet-activating fac 100.0 2.2E-37 7.4E-42 296.3 33.6 249 142-433 100-373 (410)
30 1sq9_A Antiviral protein SKI8; 100.0 2.6E-37 9E-42 294.1 33.1 287 105-431 12-397 (397)
31 3dm0_A Maltose-binding peripla 100.0 8.6E-37 2.9E-41 311.8 38.2 280 105-429 378-693 (694)
32 1gxr_A ESG1, transducin-like e 100.0 2.9E-36 9.9E-41 279.9 38.3 309 107-428 7-336 (337)
33 3k26_A Polycomb protein EED; W 100.0 1.5E-37 5.2E-42 291.9 28.6 279 106-429 15-366 (366)
34 3zwl_B Eukaryotic translation 100.0 1.4E-35 4.7E-40 278.7 39.6 282 105-431 28-348 (369)
35 1pgu_A Actin interacting prote 100.0 9.8E-36 3.4E-40 299.3 41.0 317 104-430 155-573 (615)
36 3odt_A Protein DOA1; ubiquitin 100.0 2E-35 6.9E-40 271.4 39.5 282 103-433 12-300 (313)
37 2pm9_A Protein WEB1, protein t 100.0 6.8E-38 2.3E-42 299.9 23.1 315 108-431 11-416 (416)
38 3ow8_A WD repeat-containing pr 100.0 4.4E-36 1.5E-40 277.6 32.8 249 141-433 23-283 (321)
39 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-35 8.2E-40 320.0 43.9 323 105-433 611-1078(1249)
40 1pgu_A Actin interacting prote 100.0 1.2E-35 4E-40 298.7 38.4 320 106-430 200-615 (615)
41 1k8k_C P40, ARP2/3 complex 41 100.0 7.8E-36 2.7E-40 281.1 34.7 283 107-431 6-363 (372)
42 4gqb_B Methylosome protein 50; 100.0 5.9E-36 2E-40 279.1 33.2 240 106-391 79-333 (344)
43 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-35 5.2E-40 286.7 37.1 279 141-433 109-395 (445)
44 2pbi_B Guanine nucleotide-bind 100.0 2E-35 6.8E-40 277.1 36.3 250 141-432 55-318 (354)
45 4e54_B DNA damage-binding prot 100.0 9.3E-37 3.2E-41 294.3 26.3 284 105-432 115-433 (435)
46 3ei3_B DNA damage-binding prot 100.0 1.8E-35 6.3E-40 280.3 34.2 284 133-429 57-382 (383)
47 3iz6_a 40S ribosomal protein R 100.0 1.4E-36 4.8E-41 287.8 26.5 260 130-432 47-332 (380)
48 2oaj_A Protein SNI1; WD40 repe 100.0 3E-35 1E-39 306.9 38.6 319 105-431 13-521 (902)
49 2pm7_B Protein transport prote 100.0 3.3E-35 1.1E-39 268.8 34.1 245 143-428 2-284 (297)
50 4a11_B DNA excision repair pro 100.0 3.3E-36 1.1E-40 287.0 28.6 302 127-433 21-369 (408)
51 4g56_B MGC81050 protein; prote 100.0 1.3E-35 4.4E-40 278.7 31.4 279 106-392 39-346 (357)
52 3vl1_A 26S proteasome regulato 100.0 5.9E-35 2E-39 280.1 34.5 307 112-429 59-419 (420)
53 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.7E-35 3E-39 271.8 34.8 253 139-430 4-284 (345)
54 3frx_A Guanine nucleotide-bind 100.0 9.2E-35 3.1E-39 268.6 34.5 249 140-431 7-269 (319)
55 3v7d_B Cell division control p 100.0 2.2E-34 7.7E-39 279.9 38.8 291 133-433 104-425 (464)
56 4ery_A WD repeat-containing pr 100.0 3.4E-34 1.2E-38 263.8 37.6 250 139-433 12-272 (312)
57 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-34 1.7E-38 297.8 41.6 319 107-432 56-608 (902)
58 3sfz_A APAF-1, apoptotic pepti 100.0 1E-34 3.5E-39 315.0 37.7 322 105-433 695-1162(1249)
59 3gre_A Serine/threonine-protei 100.0 8.3E-35 2.8E-39 280.8 32.7 284 133-426 47-437 (437)
60 3i2n_A WD repeat-containing pr 100.0 8.1E-35 2.8E-39 272.5 31.6 285 106-433 15-357 (357)
61 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-33 7.1E-38 291.9 43.1 316 104-429 8-386 (814)
62 2hes_X YDR267CP; beta-propelle 100.0 6.7E-34 2.3E-38 264.1 34.6 251 140-430 4-281 (330)
63 1r5m_A SIR4-interacting protei 100.0 6E-34 2.1E-38 272.7 33.2 291 130-431 26-363 (425)
64 3dwl_C Actin-related protein 2 100.0 2.6E-35 8.9E-40 278.5 22.3 279 107-427 9-377 (377)
65 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-35 9.3E-40 288.4 23.1 297 123-430 177-518 (524)
66 4a11_B DNA excision repair pro 100.0 1.2E-33 4.1E-38 269.3 33.5 317 105-429 39-405 (408)
67 2xzm_R RACK1; ribosome, transl 100.0 3.5E-33 1.2E-37 260.7 35.9 250 141-432 12-288 (343)
68 2pm7_B Protein transport prote 100.0 2E-33 6.9E-38 256.9 30.8 245 105-389 5-285 (297)
69 3bg1_A Protein SEC13 homolog; 100.0 3.1E-34 1E-38 264.7 24.9 248 144-428 7-292 (316)
70 3mmy_A MRNA export factor; mRN 100.0 4.3E-33 1.5E-37 261.5 33.1 280 103-428 33-345 (368)
71 4aow_A Guanine nucleotide-bind 100.0 4.1E-33 1.4E-37 259.2 32.6 251 141-432 29-289 (340)
72 3dw8_B Serine/threonine-protei 100.0 2.6E-33 8.9E-38 270.7 31.9 312 105-428 24-445 (447)
73 3ei3_B DNA damage-binding prot 100.0 5.6E-33 1.9E-37 263.2 32.5 276 105-389 69-382 (383)
74 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-32 7.8E-37 251.0 34.2 251 135-433 3-259 (313)
75 3gre_A Serine/threonine-protei 100.0 5.2E-33 1.8E-37 268.2 31.2 275 106-386 60-437 (437)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-33 7.3E-38 268.0 27.5 281 113-432 38-345 (402)
77 1yfq_A Cell cycle arrest prote 100.0 4.9E-32 1.7E-36 252.2 35.2 271 141-421 2-315 (342)
78 3vl1_A 26S proteasome regulato 100.0 8.3E-33 2.8E-37 265.1 30.5 272 151-430 57-366 (420)
79 1erj_A Transcriptional repress 100.0 6.2E-32 2.1E-36 257.0 35.8 236 110-390 124-390 (393)
80 2pm9_A Protein WEB1, protein t 100.0 1.5E-33 5.1E-38 269.8 24.7 282 149-432 11-340 (416)
81 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-32 4.5E-37 255.8 30.4 297 103-432 5-340 (351)
82 1gxr_A ESG1, transducin-like e 100.0 2.3E-32 7.8E-37 253.6 31.5 276 149-432 8-299 (337)
83 3jrp_A Fusion protein of prote 100.0 2.2E-32 7.5E-37 257.9 31.8 252 141-429 2-287 (379)
84 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-31 5.4E-36 250.6 35.4 287 133-431 3-338 (355)
85 3bg1_A Protein SEC13 homolog; 100.0 1.3E-32 4.3E-37 253.9 26.9 243 105-388 9-292 (316)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-31 6E-36 258.6 34.3 282 109-429 4-391 (450)
87 3dm0_A Maltose-binding peripla 100.0 1.4E-31 4.7E-36 273.3 34.9 252 140-433 372-636 (694)
88 1p22_A F-BOX/WD-repeat protein 100.0 4.8E-32 1.6E-36 261.4 29.6 257 105-409 169-434 (435)
89 3k26_A Polycomb protein EED; W 100.0 2.8E-32 9.6E-37 255.9 26.4 245 107-389 67-366 (366)
90 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-31 1.4E-35 274.5 37.7 282 141-430 4-303 (814)
91 4h5i_A Guanine nucleotide-exch 100.0 2.6E-31 8.8E-36 250.1 31.2 272 150-430 14-344 (365)
92 3jrp_A Fusion protein of prote 100.0 1.1E-30 3.7E-35 246.3 32.5 247 103-350 5-295 (379)
93 1sq9_A Antiviral protein SKI8; 100.0 3.4E-31 1.2E-35 251.9 27.8 256 141-433 7-326 (397)
94 3zwl_B Eukaryotic translation 100.0 4.8E-30 1.6E-34 240.9 34.5 245 141-432 23-307 (369)
95 2j04_B YDR362CP, TAU91; beta p 100.0 6E-32 2.1E-36 264.7 21.5 266 141-430 125-429 (524)
96 3mmy_A MRNA export factor; mRN 100.0 1.4E-30 4.8E-35 244.4 30.0 258 133-433 23-308 (368)
97 4aez_A CDC20, WD repeat-contai 100.0 3E-30 1E-34 246.1 30.4 244 143-432 84-339 (401)
98 2xyi_A Probable histone-bindin 100.0 2.2E-30 7.5E-35 249.4 29.3 257 143-430 121-411 (430)
99 3dw8_B Serine/threonine-protei 100.0 4.6E-31 1.6E-35 255.0 23.7 254 148-432 26-376 (447)
100 1yfq_A Cell cycle arrest prote 100.0 7.7E-30 2.6E-34 237.4 30.9 274 105-386 7-321 (342)
101 3i2n_A WD repeat-containing pr 100.0 4.4E-30 1.5E-34 240.3 29.0 249 141-431 9-293 (357)
102 1k8k_C P40, ARP2/3 complex 41 100.0 4.3E-30 1.5E-34 241.8 29.0 239 146-429 4-274 (372)
103 3jro_A Fusion protein of prote 100.0 3.1E-30 1.1E-34 265.2 29.4 251 143-430 2-286 (753)
104 3dwl_C Actin-related protein 2 100.0 2.8E-31 9.6E-36 250.8 19.9 242 145-428 6-280 (377)
105 4e54_B DNA damage-binding prot 100.0 5.4E-31 1.8E-35 254.0 21.2 252 141-433 110-391 (435)
106 3vu4_A KMHSV2; beta-propeller 100.0 5.6E-29 1.9E-33 233.2 31.8 278 105-391 15-338 (355)
107 3lrv_A PRE-mRNA-splicing facto 100.0 7.9E-30 2.7E-34 238.0 25.9 266 119-430 48-334 (343)
108 1l0q_A Surface layer protein; 100.0 3.2E-27 1.1E-31 224.1 43.7 298 122-432 5-345 (391)
109 4h5i_A Guanine nucleotide-exch 100.0 1.4E-28 4.7E-33 231.4 31.4 238 106-343 70-344 (365)
110 4gga_A P55CDC, cell division c 100.0 6.5E-28 2.2E-32 231.4 35.8 246 106-396 144-402 (420)
111 4gq1_A NUP37; propeller, trans 100.0 3E-29 1E-33 238.4 25.1 237 154-428 93-388 (393)
112 4ggc_A P55CDC, cell division c 100.0 6.1E-28 2.1E-32 222.0 32.0 240 153-433 28-277 (318)
113 2w18_A PALB2, fancn, partner a 100.0 2.1E-28 7.1E-33 220.9 27.5 273 111-428 41-356 (356)
114 3bws_A Protein LP49; two-domai 100.0 1.5E-27 5.1E-32 229.5 33.5 270 110-429 123-432 (433)
115 3jro_A Fusion protein of prote 100.0 1.4E-28 4.8E-33 252.9 27.4 245 105-389 5-285 (753)
116 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-29 4.3E-34 243.2 16.8 274 106-418 49-350 (588)
117 2aq5_A Coronin-1A; WD40 repeat 100.0 6.7E-28 2.3E-32 229.9 28.5 242 154-431 38-301 (402)
118 2xyi_A Probable histone-bindin 100.0 9.9E-28 3.4E-32 230.8 29.6 252 105-390 124-411 (430)
119 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-28 8.8E-33 234.2 23.2 255 107-428 13-296 (588)
120 1l0q_A Surface layer protein; 100.0 1.2E-25 4.1E-30 213.2 37.0 259 163-433 3-279 (391)
121 1nir_A Nitrite reductase; hemo 100.0 1.5E-25 5.3E-30 220.9 37.7 302 122-433 152-518 (543)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-27 7.2E-32 221.5 21.9 230 157-431 43-294 (343)
123 4gq1_A NUP37; propeller, trans 100.0 4.7E-27 1.6E-31 223.3 23.0 226 121-389 103-389 (393)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-26 1.2E-30 221.3 28.4 267 150-427 4-337 (450)
125 3bws_A Protein LP49; two-domai 99.9 3.6E-25 1.2E-29 212.8 28.0 266 125-433 95-394 (433)
126 3f3f_A Nucleoporin SEH1; struc 99.9 3.1E-25 1.1E-29 205.9 25.2 217 144-393 5-253 (351)
127 2w18_A PALB2, fancn, partner a 99.9 1.6E-24 5.5E-29 195.6 23.1 184 118-340 143-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-21 3.9E-26 187.4 30.5 288 110-411 63-409 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 7.9E-22 2.7E-26 202.7 30.1 311 110-430 37-460 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-21 8.8E-26 184.9 27.0 270 149-431 61-389 (415)
131 2z3z_A Dipeptidyl aminopeptida 99.9 6.1E-21 2.1E-25 195.1 30.9 306 114-431 30-437 (706)
132 1pby_B Quinohemoprotein amine 99.9 1.9E-21 6.6E-26 179.9 24.7 266 121-433 3-314 (337)
133 1nir_A Nitrite reductase; hemo 99.9 4.1E-20 1.4E-24 182.2 32.9 278 112-398 181-523 (543)
134 1ri6_A Putative isomerase YBHE 99.9 5.2E-20 1.8E-24 170.7 29.9 265 126-431 12-312 (343)
135 3u4y_A Uncharacterized protein 99.9 2E-19 6.9E-24 166.2 32.5 265 122-392 13-307 (331)
136 3vgz_A Uncharacterized protein 99.9 5.1E-19 1.7E-23 164.8 33.3 261 149-419 39-334 (353)
137 1k32_A Tricorn protease; prote 99.9 2.5E-19 8.6E-24 190.7 31.2 312 106-432 200-603 (1045)
138 1k32_A Tricorn protease; prote 99.9 2.6E-19 9E-24 190.6 31.2 272 145-429 198-502 (1045)
139 2ojh_A Uncharacterized protein 99.9 2.3E-19 7.9E-24 162.3 26.1 245 125-379 18-292 (297)
140 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-19 8E-24 184.3 29.1 271 150-429 36-413 (741)
141 1xfd_A DIP, dipeptidyl aminope 99.8 3.5E-19 1.2E-23 182.5 27.2 294 112-416 19-427 (723)
142 3u4y_A Uncharacterized protein 99.8 6.2E-18 2.1E-22 156.2 31.3 264 157-431 4-306 (331)
143 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-18 4.7E-23 177.6 29.0 305 110-427 82-474 (706)
144 1z68_A Fibroblast activation p 99.8 5.8E-19 2E-23 180.8 22.4 312 114-432 20-446 (719)
145 1jmx_B Amine dehydrogenase; ox 99.8 3.4E-18 1.1E-22 158.9 24.6 258 155-433 4-329 (349)
146 3hfq_A Uncharacterized protein 99.8 2.6E-17 9E-22 153.1 29.4 265 127-432 14-322 (347)
147 3vgz_A Uncharacterized protein 99.8 8.7E-17 3E-21 149.6 32.5 257 109-379 40-334 (353)
148 2ojh_A Uncharacterized protein 99.8 7.3E-18 2.5E-22 152.4 23.5 245 167-420 17-293 (297)
149 1xfd_A DIP, dipeptidyl aminope 99.8 2.4E-18 8.1E-23 176.3 22.5 269 152-429 18-393 (723)
150 3o4h_A Acylamino-acid-releasin 99.8 6.7E-18 2.3E-22 168.6 24.5 262 149-428 20-314 (582)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-17 4.8E-22 159.7 24.6 227 129-390 23-279 (434)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.6E-17 5.5E-22 159.3 24.9 192 111-343 38-279 (434)
153 3scy_A Hypothetical bacterial 99.8 7.1E-16 2.4E-20 144.3 34.9 278 126-408 24-360 (361)
154 1ri6_A Putative isomerase YBHE 99.8 6.2E-16 2.1E-20 143.0 28.3 232 108-341 36-307 (343)
155 3o4h_A Acylamino-acid-releasin 99.8 8.1E-17 2.8E-21 160.7 22.3 258 109-389 21-315 (582)
156 2oiz_A Aromatic amine dehydrog 99.7 3.4E-15 1.1E-19 139.7 30.6 273 127-411 29-359 (361)
157 1jmx_B Amine dehydrogenase; ox 99.7 3.2E-15 1.1E-19 138.7 26.2 252 122-397 14-333 (349)
158 3hfq_A Uncharacterized protein 99.7 1.2E-14 4.1E-19 135.1 29.6 232 110-341 40-316 (347)
159 1pby_B Quinohemoprotein amine 99.7 1.1E-15 3.6E-20 141.1 21.9 230 112-352 36-320 (337)
160 1qks_A Cytochrome CD1 nitrite 99.7 2.7E-13 9.2E-18 133.4 39.7 301 122-433 170-542 (567)
161 3fvz_A Peptidyl-glycine alpha- 99.7 2.1E-14 7.2E-19 132.5 29.5 259 150-430 23-323 (329)
162 3pe7_A Oligogalacturonate lyas 99.7 8.5E-15 2.9E-19 138.1 26.8 286 133-429 14-382 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.1E-15 1.7E-19 138.8 24.7 262 129-431 14-343 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.7 4.4E-15 1.5E-19 152.3 24.2 311 112-431 19-451 (740)
165 1q7f_A NHL, brain tumor CG1071 99.7 1.4E-13 4.8E-18 124.2 30.6 241 147-431 26-282 (286)
166 3scy_A Hypothetical bacterial 99.7 1.2E-13 4E-18 129.1 30.7 271 159-432 10-342 (361)
167 3q7m_A Lipoprotein YFGL, BAMB; 99.7 2.4E-13 8.3E-18 127.8 31.3 295 118-426 52-375 (376)
168 4a5s_A Dipeptidyl peptidase 4 99.7 2.4E-14 8.1E-19 146.9 25.6 268 151-428 17-397 (740)
169 1z68_A Fibroblast activation p 99.6 3.2E-15 1.1E-19 153.0 17.7 267 155-429 20-391 (719)
170 2oiz_A Aromatic amine dehydrog 99.6 4.7E-14 1.6E-18 131.9 23.8 264 161-433 14-340 (361)
171 3pe7_A Oligogalacturonate lyas 99.6 1.3E-13 4.6E-18 129.9 26.0 265 115-388 41-381 (388)
172 3dsm_A Uncharacterized protein 99.6 9.4E-13 3.2E-17 121.4 28.6 252 170-433 15-305 (328)
173 3azo_A Aminopeptidase; POP fam 99.6 4.2E-13 1.4E-17 135.9 27.4 281 105-432 19-372 (662)
174 3c5m_A Oligogalacturonate lyas 99.6 7.1E-14 2.4E-18 132.0 20.2 285 132-431 13-386 (396)
175 3dsm_A Uncharacterized protein 99.6 2.1E-12 7.3E-17 118.9 28.7 270 125-407 13-319 (328)
176 2gop_A Trilobed protease; beta 99.6 2.4E-12 8.1E-17 119.4 28.7 235 128-388 42-330 (347)
177 1q7f_A NHL, brain tumor CG1071 99.6 1.1E-11 3.7E-16 111.7 32.0 234 109-392 29-283 (286)
178 2mad_H Methylamine dehydrogena 99.6 3.1E-11 1.1E-15 112.9 34.6 260 130-433 48-354 (373)
179 2bkl_A Prolyl endopeptidase; m 99.6 4.6E-13 1.6E-17 136.4 23.5 242 148-432 118-400 (695)
180 2xdw_A Prolyl endopeptidase; a 99.5 2E-12 7E-17 131.9 27.8 243 148-431 122-416 (710)
181 3c5m_A Oligogalacturonate lyas 99.5 2E-12 6.9E-17 121.9 25.3 268 112-392 38-387 (396)
182 2dg1_A DRP35, lactonase; beta 99.5 8.6E-12 2.9E-16 114.9 28.7 247 125-419 23-300 (333)
183 2gop_A Trilobed protease; beta 99.5 6.2E-12 2.1E-16 116.6 26.7 256 151-431 15-332 (347)
184 2z2n_A Virginiamycin B lyase; 99.5 2.6E-10 9E-15 102.9 36.7 271 110-432 15-298 (299)
185 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.6E-12 8.8E-17 120.3 23.4 242 111-390 41-342 (365)
186 3sjl_D Methylamine dehydrogena 99.5 6.5E-11 2.2E-15 109.6 30.0 275 128-410 58-384 (386)
187 3fvz_A Peptidyl-glycine alpha- 99.5 7.8E-11 2.7E-15 108.5 30.4 209 129-342 69-322 (329)
188 3e5z_A Putative gluconolactona 99.5 2.5E-11 8.4E-16 110.0 26.0 242 141-433 18-290 (296)
189 3q7m_A Lipoprotein YFGL, BAMB; 99.5 3E-11 1E-15 113.4 27.0 259 161-433 52-341 (376)
190 1rwi_B Serine/threonine-protei 99.5 9.6E-12 3.3E-16 110.9 22.2 236 152-434 25-269 (270)
191 3no2_A Uncharacterized protein 99.5 4.8E-11 1.6E-15 106.9 25.8 199 121-329 7-230 (276)
192 1yr2_A Prolyl oligopeptidase; 99.4 1.7E-11 5.8E-16 125.7 23.6 242 148-432 160-444 (741)
193 3azo_A Aminopeptidase; POP fam 99.4 8.2E-12 2.8E-16 126.4 20.9 239 145-431 18-327 (662)
194 3e5z_A Putative gluconolactona 99.4 1E-10 3.5E-15 105.8 25.8 224 110-343 28-287 (296)
195 3sjl_D Methylamine dehydrogena 99.4 1.8E-10 6.3E-15 106.6 27.1 269 156-433 38-367 (386)
196 2xdw_A Prolyl endopeptidase; a 99.4 3.1E-10 1E-14 115.8 30.4 238 110-391 125-416 (710)
197 2z2n_A Virginiamycin B lyase; 99.4 3.5E-09 1.2E-13 95.4 33.1 237 146-431 10-256 (299)
198 3no2_A Uncharacterized protein 99.4 1E-10 3.4E-15 104.8 22.4 205 161-416 4-230 (276)
199 2bkl_A Prolyl endopeptidase; m 99.4 5.5E-11 1.9E-15 121.0 22.4 240 108-392 119-400 (695)
200 2dg1_A DRP35, lactonase; beta 99.4 2E-09 6.8E-14 99.0 30.7 221 110-333 45-301 (333)
201 1kb0_A Quinohemoprotein alcoho 99.4 1.6E-10 5.6E-15 116.6 24.8 301 118-429 76-567 (677)
202 2qc5_A Streptogramin B lactona 99.4 1.6E-08 5.6E-13 91.0 35.8 267 110-428 20-299 (300)
203 3hxj_A Pyrrolo-quinoline quino 99.4 1.1E-11 3.9E-16 113.9 14.9 290 119-431 30-326 (330)
204 1qks_A Cytochrome CD1 nitrite 99.3 2.4E-09 8.1E-14 105.4 31.5 263 160-430 165-478 (567)
205 1yiq_A Quinohemoprotein alcoho 99.3 2.9E-10 9.9E-15 115.0 25.7 285 118-416 69-536 (689)
206 3c75_H MADH, methylamine dehyd 99.3 1.9E-10 6.4E-15 108.5 22.1 263 129-433 99-406 (426)
207 1rwi_B Serine/threonine-protei 99.3 6.2E-10 2.1E-14 99.0 24.5 234 111-392 25-267 (270)
208 1kb0_A Quinohemoprotein alcoho 99.3 3.4E-10 1.2E-14 114.3 25.0 269 162-433 77-511 (677)
209 1xip_A Nucleoporin NUP159; bet 99.3 7.4E-11 2.5E-15 109.7 17.4 170 231-415 39-230 (388)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.5E-09 1.9E-13 95.0 29.1 242 148-430 15-300 (314)
211 1yiq_A Quinohemoprotein alcoho 99.3 9.5E-10 3.2E-14 111.2 25.7 268 162-433 70-509 (689)
212 1xip_A Nucleoporin NUP159; bet 99.3 2.6E-10 9E-15 106.0 18.9 167 152-328 39-230 (388)
213 1yr2_A Prolyl oligopeptidase; 99.2 2.2E-09 7.5E-14 110.0 26.5 239 110-391 163-443 (741)
214 3hrp_A Uncharacterized protein 99.2 1.7E-08 5.9E-13 95.6 29.9 232 152-428 132-409 (409)
215 1mda_H Methylamine dehydrogena 99.2 3.5E-09 1.2E-13 98.1 24.5 266 130-410 47-367 (368)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.8E-08 6.1E-13 91.6 28.3 229 111-343 19-300 (314)
217 2qc5_A Streptogramin B lactona 99.2 6.9E-08 2.4E-12 86.8 31.9 235 148-431 17-261 (300)
218 3iuj_A Prolyl endopeptidase; h 99.1 1.7E-08 6E-13 102.4 26.4 236 148-391 126-407 (693)
219 4a2l_A BT_4663, two-component 99.1 8.6E-07 2.9E-11 91.5 39.1 309 112-431 175-528 (795)
220 3hxj_A Pyrrolo-quinoline quino 99.1 2.7E-10 9.3E-15 104.5 11.1 255 156-431 25-285 (330)
221 4a2l_A BT_4663, two-component 99.1 1.2E-06 4.1E-11 90.5 38.6 311 109-432 214-574 (795)
222 2mad_H Methylamine dehydrogena 99.1 3.4E-07 1.2E-11 85.5 30.7 215 128-348 96-356 (373)
223 3g4e_A Regucalcin; six bladed 99.1 2.3E-07 7.9E-12 83.8 28.8 213 113-330 16-260 (297)
224 2hz6_A Endoplasmic reticulum t 99.1 1.1E-10 3.9E-15 109.1 6.3 202 161-411 8-215 (369)
225 1kv9_A Type II quinohemoprotei 99.1 1.6E-07 5.5E-12 94.7 28.9 287 118-417 65-520 (668)
226 2hz6_A Endoplasmic reticulum t 99.0 1.2E-10 4E-15 109.0 5.4 188 118-317 8-206 (369)
227 1kv9_A Type II quinohemoprotei 99.0 4.3E-08 1.5E-12 98.8 23.2 269 162-433 66-492 (668)
228 2ad6_A Methanol dehydrogenase 99.0 2.5E-07 8.7E-12 91.3 28.2 282 118-411 61-518 (571)
229 3g4e_A Regucalcin; six bladed 99.0 1.9E-06 6.4E-11 77.7 31.4 212 145-364 7-249 (297)
230 2ad6_A Methanol dehydrogenase 99.0 3.1E-07 1E-11 90.7 27.5 269 162-433 62-498 (571)
231 3dr2_A Exported gluconolactona 99.0 1.2E-07 4.1E-12 86.0 22.5 226 144-420 38-298 (305)
232 1w6s_A Methanol dehydrogenase 99.0 2.4E-07 8.1E-12 91.6 25.7 283 118-433 61-507 (599)
233 3v9f_A Two-component system se 99.0 4.8E-06 1.7E-10 85.7 36.8 313 110-432 211-571 (781)
234 3v9f_A Two-component system se 99.0 3.4E-06 1.2E-10 86.9 35.5 311 110-431 163-526 (781)
235 1mda_H Methylamine dehydrogena 98.9 1.3E-08 4.5E-13 94.3 14.6 246 173-433 47-350 (368)
236 3hrp_A Uncharacterized protein 98.9 1.3E-06 4.4E-11 82.6 28.4 220 111-340 132-408 (409)
237 2iwa_A Glutamine cyclotransfer 98.9 2.6E-06 8.8E-11 74.7 27.3 208 141-391 10-239 (266)
238 1flg_A Protein (quinoprotein e 98.9 8.5E-07 2.9E-11 87.7 27.2 287 118-416 67-547 (582)
239 2iwa_A Glutamine cyclotransfer 98.9 1.4E-06 4.7E-11 76.4 25.2 192 231-430 22-238 (266)
240 2qe8_A Uncharacterized protein 98.9 1.8E-07 6.2E-12 86.3 20.8 253 110-419 17-311 (343)
241 2ghs_A AGR_C_1268P; regucalcin 98.9 4.2E-06 1.4E-10 76.5 29.7 211 113-331 52-291 (326)
242 3iuj_A Prolyl endopeptidase; h 98.9 7.2E-07 2.5E-11 90.6 25.8 230 108-344 127-407 (693)
243 1flg_A Protein (quinoprotein e 98.9 1.1E-06 3.9E-11 86.8 26.2 267 162-433 68-520 (582)
244 2qe8_A Uncharacterized protein 98.8 1.1E-07 3.9E-12 87.7 17.5 234 141-431 10-280 (343)
245 3dr2_A Exported gluconolactona 98.8 1.2E-06 4.2E-11 79.3 23.7 211 112-333 47-298 (305)
246 3c75_H MADH, methylamine dehyd 98.8 6.2E-07 2.1E-11 84.5 21.7 221 127-349 147-409 (426)
247 2ghs_A AGR_C_1268P; regucalcin 98.8 1.5E-05 5.1E-10 72.8 30.4 201 152-364 50-279 (326)
248 3nok_A Glutaminyl cyclase; bet 98.8 1.7E-06 5.9E-11 75.0 21.5 179 230-417 55-254 (268)
249 3nol_A Glutamine cyclotransfer 98.7 2.8E-06 9.4E-11 73.7 21.5 184 141-330 32-243 (262)
250 3nol_A Glutamine cyclotransfer 98.7 4.6E-06 1.6E-10 72.3 20.3 178 230-416 43-243 (262)
251 3mbr_X Glutamine cyclotransfer 98.7 1.2E-05 4.2E-10 69.0 22.8 185 140-330 9-222 (243)
252 3nok_A Glutaminyl cyclase; bet 98.6 6.4E-06 2.2E-10 71.4 20.5 175 141-322 44-243 (268)
253 3mbr_X Glutamine cyclotransfer 98.6 1.9E-05 6.6E-10 67.8 22.1 179 230-417 21-223 (243)
254 1npe_A Nidogen, entactin; glyc 98.6 7.7E-05 2.6E-09 65.8 27.0 234 129-411 10-262 (267)
255 1npe_A Nidogen, entactin; glyc 98.6 8.5E-05 2.9E-09 65.5 26.9 195 230-433 36-242 (267)
256 1w6s_A Methanol dehydrogenase 98.5 7.4E-05 2.5E-09 73.8 26.6 228 122-352 124-513 (599)
257 2xzh_A Clathrin heavy chain 1; 98.5 0.00032 1.1E-08 62.3 27.2 252 173-432 50-335 (365)
258 2ece_A 462AA long hypothetical 98.4 9.1E-05 3.1E-09 69.3 22.3 186 241-428 98-351 (462)
259 1bpo_A Protein (clathrin); cla 98.4 0.0012 4.1E-08 61.0 28.4 252 173-432 49-334 (494)
260 2p4o_A Hypothetical protein; p 98.3 0.0012 4E-08 59.5 26.9 226 141-416 23-275 (306)
261 2ece_A 462AA long hypothetical 98.3 0.00064 2.2E-08 63.6 25.0 205 123-330 100-399 (462)
262 1ijq_A LDL receptor, low-densi 98.2 0.003 1E-07 57.1 29.9 225 203-432 3-241 (316)
263 3v65_B Low-density lipoprotein 98.2 0.0018 6.3E-08 60.3 27.1 218 207-432 93-321 (386)
264 1fwx_A Nitrous oxide reductase 98.1 0.00048 1.6E-08 66.7 22.5 179 241-429 104-361 (595)
265 2fp8_A Strictosidine synthase; 98.1 0.0016 5.3E-08 59.1 24.9 250 151-430 19-314 (322)
266 3p5b_L Low density lipoprotein 98.1 0.006 2.1E-07 57.1 31.4 226 203-432 85-323 (400)
267 1k3i_A Galactose oxidase precu 98.1 0.00037 1.3E-08 70.1 21.6 194 234-431 247-499 (656)
268 2fp8_A Strictosidine synthase; 98.1 0.0018 6.3E-08 58.6 23.7 221 115-342 24-313 (322)
269 3v64_C Agrin; beta propeller, 98.0 0.0074 2.5E-07 55.4 29.9 223 202-432 45-278 (349)
270 3sov_A LRP-6, low-density lipo 98.0 0.0064 2.2E-07 55.0 26.2 223 203-432 6-241 (318)
271 1k3i_A Galactose oxidase precu 98.0 0.00045 1.5E-08 69.5 20.3 54 130-183 220-276 (656)
272 2xzh_A Clathrin heavy chain 1; 98.0 0.0073 2.5E-07 53.7 33.1 252 128-394 48-337 (365)
273 2xe4_A Oligopeptidase B; hydro 98.0 0.0018 6.1E-08 66.1 24.5 243 148-391 170-460 (751)
274 3v65_B Low-density lipoprotein 98.0 0.011 3.8E-07 55.0 30.7 233 112-350 79-326 (386)
275 3m0c_C LDL receptor, low-densi 97.9 0.014 4.7E-07 59.5 28.8 227 202-432 396-635 (791)
276 1fwx_A Nitrous oxide reductase 97.9 0.0041 1.4E-07 60.3 23.6 216 125-342 108-431 (595)
277 3ei3_A DNA damage-binding prot 97.8 0.05 1.7E-06 58.0 38.7 306 111-431 515-915 (1158)
278 3ott_A Two-component system se 97.8 0.037 1.3E-06 56.4 33.8 303 109-428 21-351 (758)
279 3amr_A 3-phytase; beta-propell 97.8 0.0045 1.5E-07 56.0 21.2 227 161-428 39-328 (355)
280 3v64_C Agrin; beta propeller, 97.8 0.02 6.9E-07 52.4 32.1 233 111-349 35-282 (349)
281 1bpo_A Protein (clathrin); cla 97.8 0.023 7.7E-07 52.7 35.4 252 127-393 46-335 (494)
282 2xbg_A YCF48-like protein; pho 97.7 0.032 1.1E-06 50.5 31.3 262 150-426 35-319 (327)
283 3p5b_L Low density lipoprotein 97.6 0.042 1.4E-06 51.3 28.8 233 122-397 85-328 (400)
284 3ei3_A DNA damage-binding prot 97.5 0.14 4.9E-06 54.5 36.3 310 111-428 275-635 (1158)
285 1xi4_A Clathrin heavy chain; a 97.5 0.0081 2.8E-07 63.7 20.4 252 173-432 49-334 (1630)
286 1ijq_A LDL receptor, low-densi 97.5 0.052 1.8E-06 48.8 29.9 221 126-394 7-243 (316)
287 3ott_A Two-component system se 97.4 0.14 4.6E-06 52.3 37.8 301 110-432 63-404 (758)
288 2vpj_A Kelch-like protein 12; 97.4 0.036 1.2E-06 49.3 21.8 184 241-431 65-280 (301)
289 1n7d_A LDL receptor, low-densi 97.4 0.00059 2E-08 68.9 10.5 226 203-432 379-617 (699)
290 3m0c_C LDL receptor, low-densi 97.4 0.15 5E-06 52.0 30.0 222 122-349 397-639 (791)
291 3sov_A LRP-6, low-density lipo 97.4 0.073 2.5E-06 47.9 29.2 222 124-350 8-246 (318)
292 2xe4_A Oligopeptidase B; hydro 97.3 0.012 4E-07 60.1 19.1 228 196-431 180-460 (751)
293 2xn4_A Kelch-like protein 2; s 97.3 0.045 1.6E-06 48.7 20.8 222 163-391 17-278 (302)
294 3qqz_A Putative uncharacterize 97.3 0.073 2.5E-06 46.1 25.1 201 144-388 20-252 (255)
295 3s94_A LRP-6, low-density lipo 97.2 0.19 6.7E-06 49.7 37.0 313 112-430 42-424 (619)
296 3qhy_B Beta-lactamase inhibito 97.2 0.098 3.4E-06 46.1 23.7 240 151-411 24-265 (282)
297 1xi4_A Clathrin heavy chain; a 97.2 0.064 2.2E-06 57.2 22.8 251 128-393 47-335 (1630)
298 3ii7_A Kelch-like protein 7; p 97.2 0.058 2E-06 48.1 20.3 182 241-431 58-274 (306)
299 4a0p_A LRP6, LRP-6, low-densit 97.2 0.23 7.8E-06 49.3 29.4 221 202-431 7-239 (628)
300 4asc_A Kelch repeat and BTB do 97.2 0.11 3.9E-06 46.4 22.0 213 129-343 13-278 (315)
301 3s94_A LRP-6, low-density lipo 97.2 0.18 6.3E-06 49.9 25.1 223 203-432 11-246 (619)
302 3ii7_A Kelch-like protein 7; p 97.1 0.12 3.9E-06 46.1 21.7 143 241-390 104-273 (306)
303 3amr_A 3-phytase; beta-propell 97.1 0.017 6E-07 52.1 15.7 141 284-427 41-208 (355)
304 3tc9_A Hypothetical hydrolase; 97.1 0.18 6.1E-06 47.5 26.5 214 210-428 159-429 (430)
305 3qqz_A Putative uncharacterize 97.1 0.11 3.7E-06 45.0 24.8 196 224-427 21-251 (255)
306 2vpj_A Kelch-like protein 12; 97.1 0.13 4.4E-06 45.6 22.9 211 129-343 31-279 (301)
307 2xn4_A Kelch-like protein 2; s 97.1 0.051 1.7E-06 48.4 19.1 214 210-431 30-278 (302)
308 1zgk_A Kelch-like ECH-associat 97.1 0.095 3.3E-06 46.8 20.7 223 161-390 24-288 (308)
309 2p4o_A Hypothetical protein; p 97.1 0.15 5.1E-06 45.4 31.2 214 112-331 34-277 (306)
310 3qhy_B Beta-lactamase inhibito 97.0 0.15 5.1E-06 45.0 21.5 217 194-428 26-245 (282)
311 4asc_A Kelch repeat and BTB do 97.0 0.15 5.2E-06 45.6 21.0 174 165-343 8-222 (315)
312 2be1_A Serine/threonine-protei 97.0 0.037 1.3E-06 50.1 16.6 193 163-394 11-236 (339)
313 1zgk_A Kelch-like ECH-associat 97.0 0.084 2.9E-06 47.1 19.2 214 210-431 39-289 (308)
314 4a0p_A LRP6, LRP-6, low-densit 96.9 0.42 1.4E-05 47.4 39.3 309 111-428 38-419 (628)
315 2uvk_A YJHT; unknown function, 96.8 0.3 1E-05 44.4 21.9 222 127-350 29-350 (357)
316 3tc9_A Hypothetical hydrolase; 96.8 0.38 1.3E-05 45.3 26.5 143 113-258 140-301 (430)
317 2d9n_A Cleavage and polyadenyl 96.7 0.00077 2.6E-08 46.4 2.6 32 29-60 4-36 (77)
318 2woz_A Kelch repeat and BTB do 96.7 0.31 1.1E-05 43.5 21.6 93 250-344 128-233 (318)
319 2rhk_C Cleavage and polyadenyl 96.7 0.00067 2.3E-08 45.9 1.9 28 32-59 13-41 (72)
320 4hw6_A Hypothetical protein, I 96.7 0.45 1.5E-05 44.8 26.2 214 210-428 162-432 (433)
321 4hw6_A Hypothetical protein, I 96.5 0.55 1.9E-05 44.2 28.1 143 113-258 142-304 (433)
322 2p9w_A MAL S 1 allergenic prot 96.4 0.24 8.1E-06 44.4 17.1 149 277-429 16-215 (334)
323 1n7d_A LDL receptor, low-densi 96.3 0.0074 2.5E-07 60.9 7.7 227 123-397 380-622 (699)
324 2xbg_A YCF48-like protein; pho 96.2 0.65 2.2E-05 41.7 32.3 220 193-422 37-272 (327)
325 2p9w_A MAL S 1 allergenic prot 96.1 0.73 2.5E-05 41.2 23.1 187 114-302 17-265 (334)
326 2be1_A Serine/threonine-protei 96.1 0.018 6.1E-07 52.1 8.4 145 241-391 12-185 (339)
327 3pbp_A Nucleoporin NUP82; beta 95.8 0.6 2.1E-05 43.2 16.9 141 282-424 31-207 (452)
328 2woz_A Kelch repeat and BTB do 95.7 1 3.6E-05 40.0 22.2 173 251-431 80-289 (318)
329 3d2q_A Muscleblind-like protei 95.4 0.0036 1.2E-07 42.1 0.8 25 32-56 39-63 (70)
330 2e5s_A Otthump00000018578; ZF- 95.3 0.0048 1.6E-07 44.4 1.1 27 32-58 17-45 (98)
331 3pbp_A Nucleoporin NUP82; beta 95.2 1.8 6.3E-05 40.1 18.0 162 112-298 24-208 (452)
332 2rpp_A Muscleblind-like protei 95.1 0.0097 3.3E-07 41.8 2.1 28 32-59 14-43 (89)
333 3d2n_A Muscleblind-like protei 95.0 0.007 2.4E-07 42.0 1.2 25 33-57 7-33 (83)
334 2e5s_A Otthump00000018578; ZF- 95.0 0.0052 1.8E-07 44.2 0.5 25 32-56 53-77 (98)
335 2uvk_A YJHT; unknown function, 94.9 0.8 2.7E-05 41.5 15.4 92 241-332 22-128 (357)
336 3d2n_A Muscleblind-like protei 94.8 0.0064 2.2E-07 42.2 0.5 24 33-56 41-64 (83)
337 2rpp_A Muscleblind-like protei 94.6 0.0069 2.4E-07 42.5 0.4 23 34-56 50-72 (89)
338 3kya_A Putative phosphatase; s 94.6 3.2 0.00011 39.5 27.7 199 230-432 186-478 (496)
339 3d2q_A Muscleblind-like protei 94.4 0.0093 3.2E-07 40.0 0.6 24 34-57 5-30 (70)
340 2ism_A Putative oxidoreductase 94.4 2.8 9.7E-05 37.9 21.9 27 151-178 31-57 (352)
341 2zwa_A Leucine carboxyl methyl 93.9 5 0.00017 40.2 19.6 176 210-391 412-637 (695)
342 3kya_A Putative phosphatase; s 93.8 4.8 0.00016 38.3 27.1 145 112-258 141-341 (496)
343 3mvd_K Regulator of chromosome 93.8 4.3 0.00015 37.8 32.1 231 193-429 76-374 (423)
344 3sre_A PON1, serum paraoxonase 93.7 3.9 0.00013 37.1 18.8 31 399-429 220-252 (355)
345 2rhk_C Cleavage and polyadenyl 93.2 0.035 1.2E-06 37.4 1.7 27 33-59 42-69 (72)
346 2cqe_A KIAA1064 protein; CCCH 92.8 0.06 2.1E-06 38.7 2.6 25 32-56 10-35 (98)
347 2d9n_A Cleavage and polyadenyl 92.4 0.066 2.3E-06 36.6 2.3 27 33-59 36-63 (77)
348 3kci_A Probable E3 ubiquitin-p 92.4 6.5 0.00022 36.1 24.6 194 231-428 54-292 (389)
349 2zwa_A Leucine carboxyl methyl 92.0 7.4 0.00025 39.0 17.6 189 238-431 397-637 (695)
350 4d9s_A UVB-resistance protein 91.1 9.4 0.00032 35.3 34.9 193 230-428 121-356 (406)
351 3kci_A Probable E3 ubiquitin-p 89.8 12 0.0004 34.3 28.4 234 112-345 55-348 (389)
352 4gq2_M Nucleoporin NUP120; bet 89.0 13 0.00045 38.7 16.8 41 151-191 236-276 (950)
353 1a12_A RCC1, regulator of chro 86.5 20 0.00068 33.1 31.8 230 191-428 58-364 (413)
354 1a12_A RCC1, regulator of chro 86.2 21 0.0007 33.0 29.4 229 110-343 59-366 (413)
355 2ism_A Putative oxidoreductase 86.1 19 0.00064 32.4 22.3 68 113-182 34-115 (352)
356 3of7_A Regulator of chromosome 85.5 25 0.00085 33.2 24.0 194 229-428 66-340 (473)
357 3f7f_A Nucleoporin NUP120; nuc 85.2 15 0.0005 36.6 13.6 112 231-343 163-306 (729)
358 1tl2_A L10, protein (tachylect 85.0 4.3 0.00015 33.9 8.3 101 151-254 41-159 (236)
359 3of7_A Regulator of chromosome 84.8 27 0.00091 33.0 28.4 192 229-428 147-404 (473)
360 1m9o_A Tristetraproline; Cys3H 83.1 0.7 2.4E-05 31.3 2.5 30 30-59 7-38 (77)
361 2g8s_A Glucose/sorbosone dehyd 82.7 27 0.00092 31.4 25.5 56 370-427 289-350 (353)
362 1suu_A DNA gyrase subunit A; t 80.4 30 0.001 30.5 14.6 148 282-429 7-181 (312)
363 1tl2_A L10, protein (tachylect 80.0 25 0.00085 29.4 11.1 142 275-427 42-206 (236)
364 2cqe_A KIAA1064 protein; CCCH 77.4 0.89 3E-05 32.5 1.5 25 35-59 36-62 (98)
365 3mvd_K Regulator of chromosome 77.3 45 0.0015 30.7 39.3 232 152-390 76-375 (423)
366 4d9s_A UVB-resistance protein 76.4 47 0.0016 30.5 32.0 193 230-428 68-304 (406)
367 3uc1_A DNA gyrase subunit A; D 75.1 45 0.0015 29.6 22.4 188 229-420 94-321 (327)
368 1zi0_A DNA gyrase subunit A; b 74.7 44 0.0015 29.4 16.2 146 284-429 4-176 (307)
369 1wp5_A Topoisomerase IV; broke 73.0 50 0.0017 29.2 13.3 147 283-429 5-174 (323)
370 4gq2_M Nucleoporin NUP120; bet 70.1 65 0.0022 33.5 13.9 37 357-396 237-273 (950)
371 3sbq_A Nitrous-oxide reductase 66.9 95 0.0033 30.0 21.8 255 165-429 73-408 (638)
372 3f7f_A Nucleoporin NUP120; nuc 66.3 9.9 0.00034 37.8 6.4 38 152-191 223-260 (729)
373 4fhn_B Nucleoporin NUP120; pro 65.3 4.5 0.00015 43.2 4.1 40 152-191 239-278 (1139)
374 3u1l_A PRE-mRNA-splicing facto 64.6 1.1 3.9E-05 38.0 -0.5 26 32-57 67-93 (240)
375 4hvt_A Ritya.17583.B, post-pro 64.1 1.2E+02 0.0042 30.2 24.6 94 331-428 318-429 (711)
376 3l6v_A GYRA, DNA gyrase subuni 63.7 86 0.0029 28.4 16.0 148 282-429 6-180 (370)
377 3s25_A Hypothetical 7-bladed b 60.8 85 0.0029 27.4 28.1 194 211-427 89-291 (302)
378 3sre_A PON1, serum paraoxonase 60.3 97 0.0033 27.8 22.2 96 248-346 138-256 (355)
379 4fhn_B Nucleoporin NUP120; pro 58.1 33 0.0011 36.5 9.2 28 283-310 249-276 (1139)
380 1cru_A Protein (soluble quinop 50.9 1.6E+02 0.0054 27.4 14.2 121 300-420 13-165 (454)
381 3uc1_A DNA gyrase subunit A; D 48.9 1.4E+02 0.0048 26.3 21.5 185 241-429 55-279 (327)
382 3no0_A DNA gyrase subunit A; D 47.8 1.3E+02 0.0046 25.7 12.7 104 323-429 80-196 (276)
383 3hx6_A Type 4 fimbrial biogene 46.2 2.1E+02 0.0072 27.5 14.3 146 283-431 85-286 (570)
384 3no0_A DNA gyrase subunit A; D 42.2 1.6E+02 0.0056 25.1 20.2 181 241-429 37-246 (276)
385 1zi0_A DNA gyrase subunit A; b 41.3 1.8E+02 0.0061 25.3 26.0 185 241-429 55-277 (307)
386 4b2v_A S64; toxin, ICK; NMR {S 39.9 3.8 0.00013 20.9 -0.7 13 40-52 18-30 (32)
387 2wg3_C Hedgehog-interacting pr 39.8 1.4E+02 0.0048 27.9 9.4 27 315-341 15-44 (463)
388 3q6k_A 43.2 kDa salivary prote 36.3 2.5E+02 0.0084 25.5 19.3 135 294-429 124-306 (381)
389 3a9g_A Putative uncharacterize 35.7 2.3E+02 0.008 25.1 27.1 70 112-182 31-115 (354)
390 3s25_A Hypothetical 7-bladed b 34.3 2.3E+02 0.0078 24.5 26.0 206 118-342 24-255 (302)
391 1suu_A DNA gyrase subunit A; t 31.5 2.6E+02 0.0089 24.3 25.7 145 241-390 60-232 (312)
392 3das_A Putative oxidoreductase 30.7 2.9E+02 0.0099 24.6 27.6 35 150-184 31-65 (347)
393 8tfv_A Protein (thanatin); bac 30.5 8.1 0.00028 17.7 -0.4 7 42-48 14-20 (21)
394 2d9m_A Zinc finger CCCH-type d 28.0 14 0.00049 24.1 0.3 22 36-57 21-43 (69)
395 1as5_A Conotoxin Y-PIIIE; neur 26.0 24 0.00081 17.3 0.8 8 43-50 7-14 (26)
396 4a9v_A PHOX; hydrolase, beta-p 25.9 1.6E+02 0.0055 28.5 7.2 39 130-169 510-549 (592)
397 1zvt_A Topoisomerase IV subuni 25.2 3.1E+02 0.01 23.1 13.4 142 285-429 4-163 (256)
398 3sbq_A Nitrous-oxide reductase 22.4 5.4E+02 0.018 25.0 9.9 93 294-389 299-408 (638)
399 1bhu_A SMPI, metalloproteinase 20.8 38 0.0013 22.1 1.2 13 42-54 60-72 (102)
400 3zwu_A Alkaline phosphatase PH 20.4 2.3E+02 0.0077 27.5 7.2 38 130-168 510-548 (592)
401 1q47_A Semaphorin 3A; beta pro 20.1 1.5E+02 0.0053 27.9 5.8 55 122-176 424-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-43 Score=333.89 Aligned_cols=278 Identities=21% Similarity=0.317 Sum_probs=248.9
Q ss_pred cccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
....|..+|+|+.|+++ .+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35678999999999765 4788999999999999998 88899999999999999999999999999999999999998
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
++++.. +.+|...|.+++|+|+ +|++|+.|++|++||+.++
T Consensus 182 ~~~~~~-------------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 182 FECIRT-------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp SCEEEC-------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred CceeEE-------------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 876643 5679999999999987 9999999999999999987
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC--------------
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-------------- 323 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~-------------- 323 (434)
..+..+.+|...|.++.++ +.+|++++.|++|++||++++++...+..|...|.+++|.+
T Consensus 225 ----~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 225 ----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp ----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred ----cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 6678889999999999996 56899999999999999999999999999999999999973
Q ss_pred --------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 324 --------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 324 --------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
.+|++|+.|+.|++||++++..+..+..|. ..+.+++|++++. +|++++.|+.|++||+.+++.+..
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~---~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSS---CEEEEETTTEEEEECCTTSCCCEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCceEEE
Confidence 489999999999999999888777766654 4688899887655 899999999999999999888777
Q ss_pred cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 396 IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 396 ~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+. |...|++++|+|++ +|++|+.||+|+||+++
T Consensus 376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 65 67889999999999 99999999999999863
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-41 Score=317.72 Aligned_cols=283 Identities=16% Similarity=0.242 Sum_probs=247.1
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.....|..+|.|+.|+++ .+++|+.|+.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 335678999999999765 4788999999999999998 8889999999999999999999999999999999999998
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~ 259 (434)
+.+.... ....+.+|...|.++.|.++ .+++++.|+.|++||+.++
T Consensus 128 ~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 128 TREGNVR---------------------------------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174 (340)
T ss_dssp TCSBSCE---------------------------------EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred cCCCcce---------------------------------eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC
Confidence 7642110 01136789999999999887 9999999999999999887
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcE
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI 335 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i 335 (434)
+....+.+|...|.+++++ +++|++++.|++|++||+++++++..+.+|...|.+++|+ +++|++++.|++|
T Consensus 175 ----~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 175 ----QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ----cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 6778889999999999997 4589999999999999999999999999999999999998 6799999999999
Q ss_pred EEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EE
Q 013881 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LF 413 (434)
Q Consensus 336 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l 413 (434)
++||+++...+..+........+.+++|+|++. +|++|+.|+.|++||+.+++.+..+. |...|.+++|+|++ +|
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 327 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGR---LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCC---EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEE
Confidence 999998876655443333334688999987665 99999999999999999988777665 67899999999999 99
Q ss_pred EEeCCCCCEEEEE
Q 013881 414 FTGDGTGQVRVWQ 426 (434)
Q Consensus 414 ~s~~~dg~i~iwd 426 (434)
++|+.||+|+|||
T Consensus 328 ~s~s~D~~i~iWd 340 (340)
T 1got_B 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCccEEecC
Confidence 9999999999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.4e-42 Score=316.77 Aligned_cols=278 Identities=21% Similarity=0.301 Sum_probs=244.9
Q ss_pred ccccccceEEEEEeCC------cEEEecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 105 RAVIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~------~~~~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
...|.++|.|++|+++ .+++|+.|++|++|++.++. .....+.+|...|.+++|++++.++++++.|++|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4579999999999653 58899999999999998662 3456789999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
|+.+++.+.. +..+...+.+++|+|+ +|++|+.|+.|++|+
T Consensus 108 d~~~~~~~~~-------------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 108 DLENGKQIKS-------------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp ETTTTEEEEE-------------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred ECCCCCEEEE-------------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 9999887655 3456677888999998 999999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL 331 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~ 331 (434)
+... +....+..|...|.+++|+ +++|++++.|+.|++||+++++++..+.+|...|.+++|+ +++|++++.
T Consensus 151 ~~~~----~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 151 VESG----KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp TTTC----SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred cCCC----ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 9987 5566778888899999996 5699999999999999999999999999999999999998 679999999
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCC
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPG 410 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spd 410 (434)
|+.|++||+++......+..+. ..+.+++|+|++. +|++++.|++|++||+.+++.+..+. |...|.+++|+|+
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 301 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDT---HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 9999999999887766665554 4588999988655 89999999999999999998887765 6789999999999
Q ss_pred c-EEEEeCCCCCEEEEEcc
Q 013881 411 G-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 411 g-~l~s~~~dg~i~iwd~~ 428 (434)
+ +|++++.||+|+|||+.
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9 99999999999999973
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-40 Score=321.47 Aligned_cols=314 Identities=25% Similarity=0.381 Sum_probs=278.8
Q ss_pred ccccccc-eEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 105 RAVIKTD-ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 105 ~~~~~~~-i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
...|.+. +.|+.+..+.+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+ +++|++++.||+|++||+.+++
T Consensus 114 l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred ecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 4556664 6899999888999999999999999998 8999999999999999997 6799999999999999999999
Q ss_pred eEEEEecC-CceEEEEeCCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCC
Q 013881 184 CAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~ 260 (434)
.+..+..+ ..+.++.+++..++++ .++.|++||+.+++.. .+.+|...|.++.+.+..+++|+.||.|++||+++.
T Consensus 191 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~- 269 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE- 269 (445)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-
T ss_pred EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-
Confidence 99888754 5677777766666664 5899999999988776 778899999999997779999999999999999887
Q ss_pred CccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEc
Q 013881 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 340 (434)
+.+..+.+|...|.++.+++.++++++.|+.|++||+++++++..+..|...+.++.+++++|++++.||.|++||+
T Consensus 270 ---~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 270 ---TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp ---EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ---cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeeec-CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc------cccCcEEEEEecCCc-E
Q 013881 341 TDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI------FAKQEIRAIQLGPGG-L 412 (434)
Q Consensus 341 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~spdg-~ 412 (434)
++...+..+..+. +...+.++++. + .+|++++.||.|++||+.+++.+..+ .+...|.+++|+|++ +
T Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~--~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 347 KTGQCLQTLQGPNKHQSAVTCLQFN--K---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp TTCCEEEEECSTTSCSSCEEEEEEC--S---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred CCCcEEEEEccCCCCCCCEEEEEEC--C---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence 9887776666532 34568888774 2 38999999999999999999888776 357789999999999 9
Q ss_pred EEEeCCCCC----EEEEEccCC
Q 013881 413 FFTGDGTGQ----VRVWQWCNG 430 (434)
Q Consensus 413 l~s~~~dg~----i~iwd~~~g 430 (434)
|++|+.||+ |.|||+...
T Consensus 422 la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECSSSSSCCEEEEEECCCC
T ss_pred EEEcccCCCCccEEEEEECCCC
Confidence 999999998 999999864
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.8e-41 Score=309.00 Aligned_cols=277 Identities=21% Similarity=0.317 Sum_probs=238.6
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC----ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
...|.++|.+++|+++ .+++|+.|++|++|++... ..++..+++|...|++++|+|++++|++++.|++|+||
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4678999999999753 4888999999999998632 14678899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
|+.+++.+.. +.+|...|.+++|+++ +|++|+.|++|++||
T Consensus 93 d~~~~~~~~~-------------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 93 DVATGETYQR-------------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp ETTTTEEEEE-------------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCeeEE-------------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 9999887654 5689999999999988 999999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC--------CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA--------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQF 325 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~ 325 (434)
++. ..+..+.+|...|.++.+.+ ..|++++.|+.|++||+++.+....+.+|...|.+++++ +++
T Consensus 136 ~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 136 IKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp TTS-----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred CCC-----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence 974 45677889999999999864 279999999999999999999999999999999999998 679
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--------
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-------- 397 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 397 (434)
|++++.|+.|++||+.+.+.+..+.. ...+.+++|+|+.. +|++++ ++.+++|++........+.
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~---~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSA---QDEVFSLAFSPNRY---WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEEC---CSCEEEEEECSSSS---EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecC---CCcEEEEEEcCCCC---EEEEEc-CCCcEEEEeCcCeeeeccCcccccccc
Confidence 99999999999999998766655543 34689999988765 777766 5569999998765544332
Q ss_pred -ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 398 -AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 398 -~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+...+.+++|+||| +|++|+.||.|+|||+.++
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 35679999999999 9999999999999999875
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4e-40 Score=331.37 Aligned_cols=318 Identities=16% Similarity=0.198 Sum_probs=260.5
Q ss_pred cccccccceEEEEEeCCc---EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 104 NRAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~---~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
....|...|.+++|+++. +++|+.|++|++||..++ +++..+.+|...|++++|+|++++|++++.|++|++||+.
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 346788999999998763 888999999999999887 8899999999999999999999999999999999999999
Q ss_pred CCceEEEEe--------cCCceEEEEe--CCCEEEE-EcCCcEEEEECCCCceE--------------------------
Q 013881 181 SGQCAGVIN--------LGGEVGCMIS--EGPWIFI-GVTNFVKAWNTQTNTDL-------------------------- 223 (434)
Q Consensus 181 ~~~~~~~~~--------~~~~~~~~~~--~~~~l~~-~~~~~i~~w~~~~~~~~-------------------------- 223 (434)
+++.+..+. +...+.++.+ ++.+|++ +.|+.|++||+.+++..
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 999988873 3456776654 6666666 45889999999876532
Q ss_pred ------------------EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee-cCccceEEEEEEC
Q 013881 224 ------------------SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG 282 (434)
Q Consensus 224 ------------------~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~~ 282 (434)
.+.+|...|.+++|+|+ +|++++.|+.|++||+.++ .....+ .+|...|.++.++
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEEEEC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeeecccCCcceEEEEEEC
Confidence 23579999999999998 9999999999999999876 333333 5799999999996
Q ss_pred -CCEEEEecCCCcEEEEeCCCCeE-----------------------------------------EEEEccccccEEEEE
Q 013881 283 -ANKLYSGSMDNSIRVWNLETLQC-----------------------------------------IQTLTEHTSVVMSLL 320 (434)
Q Consensus 283 -~~~l~s~s~dg~i~vwd~~~~~~-----------------------------------------~~~~~~~~~~v~~l~ 320 (434)
+..+++++.|+.|++|++..+.. +..+ .|...+.+++
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va 455 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVA 455 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEE
Confidence 45799999999999999765321 1111 2456678888
Q ss_pred Ec--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-Cccccc--
Q 013881 321 CW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-FAERGK-- 395 (434)
Q Consensus 321 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~-- 395 (434)
++ +++|++++.|++|++||+........ ....+...+.+++|+|++. +|++++.|++|++|++.+ ++....
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~~~~~~~-~~~~h~~~v~~v~fspdg~---~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGA---FLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEE-EEEECSSCEEEEEECTTSS---EEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EeCCCCEEEEeCCCCeEEEEEccCCceeee-eccCCCCceEEEEECCCCC---EEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 88 78999999999999999976532211 2233446799999988765 999999999999999987 555443
Q ss_pred cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 396 IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 396 ~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.. |...|.+++|+||| +|++|+.|++|+||++.+++
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 23 78899999999999 99999999999999998764
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=315.56 Aligned_cols=284 Identities=15% Similarity=0.142 Sum_probs=230.4
Q ss_pred cccceEEEEEeCC-cEEEecCCCeEEEEeCCC----------CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 108 IKTDILCRNWVQG-NCMYGEKCKFLHSWTVGD----------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 108 ~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~----------~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
|...|.++.|+++ .+++++.|+++++||... ..........|...|.+++|+|++ .|++|+.||+|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~l 107 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVEL 107 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEE
Confidence 4567999999765 566666688888887321 001111222366789999999985 6889999999999
Q ss_pred EECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 013881 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (434)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vw 254 (434)
||+.+++.+.... ....+|...|.+++|+++ +|++|+.|++|++|
T Consensus 108 Wd~~~~~~~~~~~---------------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 108 WELDENETLIVSK---------------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEECTTSSCEEEE---------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeccCCCceeEee---------------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999987665432 235689999999999998 99999999999999
Q ss_pred EcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEc--cccccEEEEEEc---CCEE
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW---DQFL 326 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~---~~~l 326 (434)
|+.++ +.+..+.+|...|.++.|++ .+|++++.|++|++||+++++++..+. .|...+.+++++ +++|
T Consensus 155 d~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 155 DLAQQ----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp ETTTT----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred ECCCC----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence 99987 77889999999999999963 478999999999999999999988875 356678999997 4588
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEE
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQ 406 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 406 (434)
++|+.|+.|++||+++.+.+..+..|.. .+.+++|+|++. ++|++++.|++|+|||+.+++......|.+.|++++
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~ 306 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 306 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEECCSS--CEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEE
T ss_pred EEeccCCcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEE
Confidence 9999999999999999888877776654 589999987643 479999999999999999998877777899999999
Q ss_pred ecCCc--EEEEeCCCCCEEEEEccCCccc
Q 013881 407 LGPGG--LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 407 ~spdg--~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|+|++ +|++++.|++|++|++.++.+.
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99998 6779999999999999987653
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.7e-41 Score=313.22 Aligned_cols=285 Identities=17% Similarity=0.286 Sum_probs=245.8
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
.....|..+|+|++|+++ .+++|+.|+.|++||..++ +....+..|...|.+++|+|++.+|++++.|+.+++|++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 345679999999999765 4888999999999999988 7888889999999999999999999999999999999987
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~ 258 (434)
....... ......+..|...|.++.|+++ .|++++.|++|++||+.+
T Consensus 137 ~~~~~~~-------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 137 FDKNENM-------------------------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp CCTTCCS-------------------------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ccccccc-------------------------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 5421100 0111245679999999999988 899999999999999998
Q ss_pred CCCccccceeecCccceEEEEEEC----CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (434)
+ +.+..+.+|...|.++.+. +++|++|+.||+|++||+++++++..+..|...|.+++|+ +++|++++.|
T Consensus 186 ~----~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 186 G----QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp C----CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred C----eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 7 6778889999999999884 4689999999999999999999999999999999999997 6799999999
Q ss_pred CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG 411 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg 411 (434)
++|++||++....+..+........+.+++|++++. +|++|+.|+.|++||+.+++.+..+. |...|++++|+|++
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR---LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC---EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC
Confidence 999999998876655544443344678888887655 99999999999999999888776654 68899999999999
Q ss_pred -EEEEeCCCCCEEEEE
Q 013881 412 -LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd 426 (434)
+|++|+.||+|+||+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 999999999999995
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-41 Score=321.87 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=244.9
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|.++|+|++|+++ .+++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 4678999999999765 4888999999999999998 889999999999999999999999999999999999999764
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~ 259 (434)
..... .......+.+|.+.|.++.|.++ .|++|+.|++|++||+.++
T Consensus 141 ~~~~~------------------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 141 ADRDG------------------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp SSCCC------------------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred ccccC------------------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 31100 00011236789999999999875 7999999999999999987
Q ss_pred CCccccceee-----cCccceEEEEEEC---CCEEEEecCCCcEEEEeCC-CCeEEEEEccccccEEEEEEc--CCEEEE
Q 013881 260 TNCFEPAASL-----KGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 260 ~~~~~~~~~~-----~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (434)
+.+..+ .+|...|.++.++ +++|++|+.|++|++||++ ..+.+..+.+|...|.+++|+ +++|++
T Consensus 191 ----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 191 ----QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp ----CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred ----cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 334333 6799999999984 5799999999999999998 567889999999999999998 679999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCC-----ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-----cc
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEE-----HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-----FA 398 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 398 (434)
++.|++|++||++++..+..+..+... ..+.+++|+|++. +|++|+.||.|++||+.+++....+ .|
T Consensus 267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS---EEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC---EEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 999999999999988776665443221 2377888887665 9999999999999999988776554 36
Q ss_pred cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 399 KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 399 ~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
...|++++|+|+| +|++|+.||+|+||++...+.
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 7889999999999 999999999999999987754
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.6e-40 Score=299.96 Aligned_cols=280 Identities=15% Similarity=0.243 Sum_probs=240.3
Q ss_pred cccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
....|.+.|.+++|+++. +++++.|+.|++||+.++ +.+..+.+|..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 345788999999997764 788999999999999998 88999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~ 259 (434)
++.+.. +.+|...|.+++|+|+ +|++|+.|++|++||++..
T Consensus 87 ~~~~~~-------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 87 GEKVVD-------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp CCEEEE-------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred CcEEEE-------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 887654 5679999999999998 9999999999999999875
Q ss_pred CCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEc----CCEEEEEeC
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW----DQFLLSCSL 331 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~----~~~l~s~s~ 331 (434)
. .....+.+|...|.+++|++ ..|++|+.|++|++||+++.+....+. .|...+..+.+. +.+|++++.
T Consensus 130 ~---~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp T---EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred c---chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 3 44567889999999999974 589999999999999999887766664 466788888885 469999999
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCC
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPG 410 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spd 410 (434)
|++|++||+++...+..+..|.. .+..++|+|+.+ +|++++.||+|++||+.+++.+..+. +...+.+++|+|+
T Consensus 207 D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~---~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLP---IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSS---EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred CCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCC---EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 99999999998887777766654 588888887665 99999999999999999998888776 4678999999998
Q ss_pred c---EEEEeCCCCCEEEEEccCC
Q 013881 411 G---LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 411 g---~l~s~~~dg~i~iwd~~~g 430 (434)
+ ++++|+.|| +.+|++.+.
T Consensus 282 ~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 282 GRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp CGGGCEEEEETTE-EEEEECC--
T ss_pred CCceEEEEecCCc-eEEEEeccC
Confidence 7 366666555 888888764
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-40 Score=311.45 Aligned_cols=296 Identities=13% Similarity=0.131 Sum_probs=228.0
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC------CCcEEEEECCCCce-----EEEEec
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQC-----AGVINL 190 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~------dg~v~iwd~~~~~~-----~~~~~~ 190 (434)
.+.++.+.....|++... ...+|+..|++++|+|||++|++++. |++|++|+..++.. ......
T Consensus 19 ~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp --------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred EEecCCCccccccCCCCC-----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 344445667788986543 23579999999999999999999997 78899999887643 233445
Q ss_pred CCceEEEE--eCCCEEEEEcCCcEEEEECCCCceE-----EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 191 GGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 191 ~~~~~~~~--~~~~~l~~~~~~~i~~w~~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
...+.++. +++.+++++.++.|++||+.+++.. ...+|...|.+++|+|+ +|++|+.|+.|++||++++
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-- 171 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-- 171 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--
Confidence 56677665 4677888888999999999887643 45589999999999998 9999999999999999987
Q ss_pred ccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEc--cccccEEEEEEc---CCEEEEEeCCC
Q 013881 262 CFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW---DQFLLSCSLDK 333 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~---~~~l~s~s~dg 333 (434)
+.+..+.+|...|.++++++ .++++++.|++|++||+++++++..+. .|...+.+++|+ +.+|++++.|+
T Consensus 172 --~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 172 --AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp --EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred --cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 77888999999999999963 378999999999999999988776554 567789999997 45899999999
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC-Cc-
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP-GG- 411 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-dg- 411 (434)
.|++||+++.+.+..+..+. ..+.+++|+|+.. ++|++++.|++|+|||+++++.+..+.|.+.|++++|+| ++
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~--~~v~~l~~sp~~~--~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHS--QNITGLAYSYHSS--PFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp CEEEEESSCGGGCEEECCCS--SCEEEEEECSSSS--CCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTT
T ss_pred ceeEEECCCCcEeEEEeccc--eeEEEEEEcCCCC--CEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCC
Confidence 99999999988877776655 4588999987643 489999999999999999999988888999999999998 77
Q ss_pred EEEEeCCCCCEEEEEccCC
Q 013881 412 LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~g 430 (434)
+|++++.||+|++|++.+.
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEETTSCEEEEECC--
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 9999999999999999754
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=302.52 Aligned_cols=293 Identities=22% Similarity=0.279 Sum_probs=225.1
Q ss_pred cccccccceEEEEEeCCcEEEecCCCeEEEEeCCCC-ceEEEEe-cC-ccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG-FKLLTQL-EG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~l-~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
....|..+|.+++|+++.+++|+.|+.|++||+.++ .+.+..+ .+ |...|++++|+|++++|++++.|++|+|||+.
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 345788999999999998899999999999999864 3566666 45 99999999999999999999999999999986
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCC
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~ 258 (434)
...... ........+.+|...|.+++|+|+ +|++|+.|++|++||++.
T Consensus 89 ~~~~~~------------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 89 ESADRT------------------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp ------------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred cCcCcc------------------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 432100 000011246789999999999998 999999999999999965
Q ss_pred CCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC--eEEEEEccccccEEEEEEcC----CEEEEEe
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD----QFLLSCS 330 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~~~----~~l~s~s 330 (434)
.....+.+..+.+|...|.++.|+ +++|++++.|++|++||+.++ +++..+.+|...|.+++|++ .+|++++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 433335667788999999999996 569999999999999998876 68899999999999999984 3799999
Q ss_pred CCCcEEEEEcCCCCc-------eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc--cccc--cccc
Q 013881 331 LDKTIKVWFATDSGN-------LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA--ERGK--IFAK 399 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~--~~~~ 399 (434)
.|++|++||+..... ........+...+.+++|++.. +|++++.||.|++||..+++ .... ..|.
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG----LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS----CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC----EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 999999999865421 1111111244578999987432 69999999999999998763 2222 2345
Q ss_pred C-cEEEEEecC--Cc-EEEEeCCCCCEEEEEccCC
Q 013881 400 Q-EIRAIQLGP--GG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 400 ~-~v~~~~~sp--dg-~l~s~~~dg~i~iwd~~~g 430 (434)
. .|.+++|+| ++ +|++|+.||+|+||++++.
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 4 899999999 67 9999999999999998753
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-39 Score=302.88 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=231.1
Q ss_pred cccccccceEEEEE-----eC---CcEEEecCCCeEEEEeCCCC------ceEEEEecCccccEEEEEccCCCCEEEEEE
Q 013881 104 NRAVIKTDILCRNW-----VQ---GNCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (434)
Q Consensus 104 ~~~~~~~~i~c~~~-----~~---~~~~~g~~d~~i~vwd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s 169 (434)
....|.++|+|+.| .+ ..+++|+.|++|++||+.++ ..+...+.+|...|++++|+|++.+|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 34578999999999 43 24888999999999998743 156788999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC
Q 013881 170 KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247 (434)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~ 247 (434)
.|++|++||+.+++.+.. +.+|...|.+++|+|+ +|++++.
T Consensus 96 ~D~~v~lwd~~~~~~~~~-------------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKR-------------------------------------FVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp TTSEEEEEETTSSCEEEE-------------------------------------EECCCSCEEEEEECSSTTEEEEEET
T ss_pred CCCcEEEEECCCCcEEEE-------------------------------------EcCCCCcEEEEEECCCCCEEEEEcC
Confidence 999999999999876654 5679999999999998 9999999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceEEEEEECC------------CEEEEecCCCcEEEEeCCCCeEEEEEcccccc
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA------------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 315 (434)
|+.|++||+..... ........|...|.++.+++ .+|++++.|+.|++|| .+.+....+..|...
T Consensus 139 d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 139 EREIKLWNILGECK--FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN 215 (343)
T ss_dssp TSCEEEEESSSCEE--EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC
T ss_pred CCEEEEEeccCCce--eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc
Confidence 99999999974311 11222347889999999974 4799999999999999 556788889999999
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 316 VMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 316 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
|.+++|+ +++|++++.|+.|++||+...........+ ...+.+++|+|+.. +++ ++.|+.|++|++.+.+..
T Consensus 216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~---~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQ---WVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSC---EEE-EEESSCEEEEESSSCCSC
T ss_pred ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCC---EEE-EECCCCEEEEEeCCCCCC
Confidence 9999998 679999999999999999654433333322 23588999988654 555 556888999999876544
Q ss_pred c--cc------------cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 394 G--KI------------FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 394 ~--~~------------~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
. .+ .|...|.+++|+|+| +|++|+.||.|++|++.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 3 22 245679999999999 99999999999999998764
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-38 Score=294.16 Aligned_cols=280 Identities=21% Similarity=0.362 Sum_probs=241.1
Q ss_pred ccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|..+|+|++|+++. +++++.|+.|++|+..++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 45788899999997654 778899999999999988 888999999999999999999999999999999999999988
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+++.. +.+|...|.++.|+++ +|++|+.|+.|++||+++.
T Consensus 98 ~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~- 139 (312)
T 4ery_A 98 KCLKT-------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG- 139 (312)
T ss_dssp CEEEE-------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-
T ss_pred cEEEE-------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Confidence 77654 5578889999999988 9999999999999999887
Q ss_pred CccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEc--CCEEEEEeCCCcE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTI 335 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i 335 (434)
+....+..|..+|.++.++ +++|++++.|+.|++||+++++.+..+. .+...+..++|+ +++|++++.|+.|
T Consensus 140 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 140 ---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp ---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred ---EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 6677888999999999996 5689999999999999999999887765 456788999998 6799999999999
Q ss_pred EEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EE
Q 013881 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LF 413 (434)
Q Consensus 336 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l 413 (434)
++||+++...+..+..+..........+. .+++.+|++|+.||.|++||+.+++.+..+. |...|.+++|+|++ +|
T Consensus 217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 294 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294 (312)
T ss_dssp EEEETTTTEEEEEECSSCCSSSCCCEEEE--CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEE
T ss_pred EEEECCCCcEEEEEEecCCceEEEEEEEE--eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCce
Confidence 99999988777766665544333333333 2334589999999999999999998887776 57889999999999 88
Q ss_pred EEeC--CCCCEEEEEcc
Q 013881 414 FTGD--GTGQVRVWQWC 428 (434)
Q Consensus 414 ~s~~--~dg~i~iwd~~ 428 (434)
++++ .|++|++|+.+
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 8886 79999999964
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-38 Score=316.27 Aligned_cols=307 Identities=22% Similarity=0.343 Sum_probs=259.9
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|..+|.++.|.++ .+++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|++|++||+...
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 4567889999999765 477788999999999754 678889999999999999999999999999999999998765
Q ss_pred ceEEEEecCCceEEEE--eCCCEEEEE-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 183 QCAGVINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
...........+.++. +++.+++++ .++.+++|+........+..|...|.+++|+++ +|++++.|+.|++||..
T Consensus 336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 5443333445666664 367777765 478999999876666688999999999999998 89999999999999964
Q ss_pred CCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg 333 (434)
. +....+.+|...|.+++++ +.+|++++.|+.|++||+ +++.+..+.+|...|.+++|+ +++|++++.|+
T Consensus 416 ~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 416 G-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp C-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred C-----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3 5677888999999999996 458999999999999996 568889999999999999998 67999999999
Q ss_pred cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-
Q 013881 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG- 411 (434)
Q Consensus 334 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg- 411 (434)
.|++||. +++.+..+..|. ..+.+++|+|++. +|++++.|+.|++||+. ++.+..+. |...|++++|+||+
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~--~~v~~l~~s~dg~---~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp EEEEEET-TSCEEEEEECCS--SCEEEEEECTTSS---CEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEcC-CCCEEEEEeCCC--CCEEEEEEcCCCC---EEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEEcCCCC
Confidence 9999996 455666665554 4689999987655 89999999999999974 55555544 68899999999999
Q ss_pred EEEEeCCCCCEEEEE
Q 013881 412 LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 412 ~l~s~~~dg~i~iwd 426 (434)
+|+|++.|++|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4e-38 Score=306.35 Aligned_cols=310 Identities=24% Similarity=0.341 Sum_probs=261.1
Q ss_pred ccccccc-eEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 105 RAVIKTD-ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 105 ~~~~~~~-i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
...|... +.|+.+.++.+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+++
T Consensus 117 l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred EcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 3456665 6889998889999999999999999998 8999999999999999999988 99999999999999999999
Q ss_pred eEEEEec-CCceEEEEe----CCCEEEE-EcCCcEEEEECCCCc------------------------eEEecCCCCcEE
Q 013881 184 CAGVINL-GGEVGCMIS----EGPWIFI-GVTNFVKAWNTQTNT------------------------DLSLSGPVGQVY 233 (434)
Q Consensus 184 ~~~~~~~-~~~~~~~~~----~~~~l~~-~~~~~i~~w~~~~~~------------------------~~~~~~~~~~v~ 233 (434)
.+..+.. ...+.++.. ++.++++ +.++.|++||+.+.. ...+.+|...|.
T Consensus 195 ~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274 (464)
T ss_dssp EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE
T ss_pred EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE
Confidence 9998884 456666643 3355555 558999999998775 235778999999
Q ss_pred EEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc
Q 013881 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE 311 (434)
Q Consensus 234 ~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 311 (434)
++...++++++|+.|+.|++||+.+. +.+..+.+|...|.++.++ ++++++++.||.|++||+++++++..+.+
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 99988889999999999999999887 7788889999999999996 56999999999999999999999999999
Q ss_pred ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 312 HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 312 ~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
|...|.++.+++++|++++.||.|++||+.+........ ....+..+++.+++. ++++++ |+.|++||+.+++
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~---~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDN---ILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSS---EEEEEE-TTEEEEEETTTCC
T ss_pred CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEeCCC---EEEEec-CCeEEEEECCCCc
Confidence 999999999999999999999999999998876443332 223455566666554 888887 9999999999999
Q ss_pred cccc--ccccCcEEEEEecCCcEEEEeCCCCCEEEEEc
Q 013881 392 ERGK--IFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQW 427 (434)
Q Consensus 392 ~~~~--~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~ 427 (434)
.+.. ..+...|.+++|+.+.++++++.||.+.+|-+
T Consensus 424 ~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 8875 44688899999984437777777876665543
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=296.50 Aligned_cols=287 Identities=21% Similarity=0.332 Sum_probs=230.6
Q ss_pred ccccc-ceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEE---EEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC
Q 013881 106 AVIKT-DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLL---TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 106 ~~~~~-~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~---~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 179 (434)
..|.. .|.+++|+++ .+++|+.|+.|+|||+.++ +.. ....+|...|++++|+|++++|++++.|++|+|||+
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD-SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT-EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC-cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 45666 8999999775 4778999999999999877 322 233689999999999999999999999999999998
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
..+..... ..+.+|...|.+++|+|+ +|++|+.|+.|++||+.
T Consensus 91 ~~~~~~~~-----------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 91 NQDDFECV-----------------------------------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp CCC-EEEE-----------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCeEEE-----------------------------------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 77642211 236789999999999998 99999999999999998
Q ss_pred CCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe--EEEEEccccccEEEEEEc--CCEEEEEeC
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCSL 331 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s~ 331 (434)
.... ......+.+|...|.++.|+ +++|++++.|++|++||+++++ +...+.+|...|.+++|+ +++|++++.
T Consensus 136 ~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 136 EEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp TTSC-EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCC-eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 7532 24466788999999999996 4689999999999999998875 457889999999999998 679999999
Q ss_pred CCcEEEEEcCCCCce------------E--EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc---
Q 013881 332 DKTIKVWFATDSGNL------------E--VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG--- 394 (434)
Q Consensus 332 dg~i~vwd~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--- 394 (434)
|++|+|||....... . ......+...+..++|+++.. .|++++.|+.|++|+........
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG---ALATACGDDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC---CEEEEETTSCEEEEEECTTSCTTSCC
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC---EEEEEeCCCeEEEEEeCCCCCcceee
Confidence 999999997432211 1 111112345688999987665 79999999999999987643211
Q ss_pred -----c--ccccCcEEEEEecCCc--EEEEeCCCCCEEEEEccCCcc
Q 013881 395 -----K--IFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 395 -----~--~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g~~ 432 (434)
. ..|...|++++|+|++ +|++|+.||+|++|++.+++.
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 1 1367889999999986 899999999999999998763
No 18
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-38 Score=305.76 Aligned_cols=291 Identities=20% Similarity=0.342 Sum_probs=244.3
Q ss_pred CCCCCCCCCccccccccc--ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEe--cCccccEEEEEccCCCCEEEEE
Q 013881 93 RAGNSKNSNINNRAVIKT--DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSG 168 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~--~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l--~~h~~~V~~l~~s~~~~~l~s~ 168 (434)
|..+..|.+....+...+ ..++++|+.+++++.+.|++|+|||+.++ +.++.+ .+|...|++|+|+|++++|++|
T Consensus 87 r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 87 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred cccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence 445555666666554443 57889999988888889999999999998 666655 4678899999999999999999
Q ss_pred ECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCC
Q 013881 169 SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248 (434)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~d 248 (434)
+.||+|+|||+.+++.+.. +.+|...+.++.+++..|++|+.|
T Consensus 166 s~Dg~v~iWd~~~~~~~~~-------------------------------------~~~h~~~v~~~s~~~~~l~sgs~d 208 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLRN-------------------------------------MTSHSARVGSLSWNSYILSSGSRS 208 (420)
T ss_dssp ETTSCEEEEETTTTEEEEE-------------------------------------ECCCSSCEEEEEEETTEEEEEETT
T ss_pred ECCCeEEEEEcCCCcEEEE-------------------------------------EeCCCCceEEEeeCCCEEEEEeCC
Confidence 9999999999999987754 567899999999999999999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe----EEEEEccccccEEEEEEc
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVVMSLLCW 322 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~~ 322 (434)
+.+++||..... ..+..+.+|...+..+.+. +.++++++.|+.|++||+.+++ .+.....|...|.+++|.
T Consensus 209 ~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 209 GHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp SEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred CceeEeeecccc---eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 999999998764 5567788999999999986 5799999999999999998765 456778899999999998
Q ss_pred ---CCEEEEE--eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe--CCCeEEEEeCCCCccccc
Q 013881 323 ---DQFLLSC--SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 323 ---~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~ 395 (434)
+..++++ +.|++|++||+.++.....+..+ ..+..+.+.++.. .+++++ .|+.|+|||+.+++++..
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~---~lv~~sg~~d~~I~iwd~~~~~~v~~ 359 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYK---ELISGHGFAQNQLVIWKYPTMAKVAE 359 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTT---EEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeeccc---cceeeeeecCCCC---eEEEEEecCCCEEEEEECCCCcEEEE
Confidence 4566654 47999999999988766655443 4577888877654 555543 799999999999999888
Q ss_pred cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 396 IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 396 ~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+. |.+.|++++|+||| +|+||+.|++|+|||+.+.
T Consensus 360 l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 76 68899999999999 9999999999999999764
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-38 Score=320.01 Aligned_cols=314 Identities=16% Similarity=0.140 Sum_probs=256.7
Q ss_pred ccceEEEEEeCCc-EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc--eE
Q 013881 109 KTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CA 185 (434)
Q Consensus 109 ~~~i~c~~~~~~~-~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~ 185 (434)
++.+.+++|+++. .++.+.++.|++|++.++ +....+.+|...|++++|+|++++||+|+.|++|+|||+.+++ ..
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCCCCEEEEecCCCc-ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 4466778897653 444334679999999987 7888999999999999999999999999999999999997654 33
Q ss_pred EEEe-cCCceEEEEe--CCCEEEEEcC-----CcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 013881 186 GVIN-LGGEVGCMIS--EGPWIFIGVT-----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (434)
Q Consensus 186 ~~~~-~~~~~~~~~~--~~~~l~~~~~-----~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vw 254 (434)
..+. +...+.++.+ ++..++++.+ +.|.+||... ....+.+|...|.+++|+|+ .|++|+.|++|++|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lw 175 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEE
Confidence 4444 3456776654 6777776553 2677777432 22367899999999999997 69999999999999
Q ss_pred EcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEc-------cccccEEEEEEc--C
Q 013881 255 KFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-------EHTSVVMSLLCW--D 323 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~l~~~--~ 323 (434)
|.... +....+.+|...|.+++|+ +++|++++.|++|++||+.+++++..+. +|...|.+++|+ +
T Consensus 176 d~~~~----~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 176 EGPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp ETTTB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ECCCC----eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 98765 6677889999999999996 5689999999999999999999998884 799999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEee-----------------------------------------ecCCccEEEEE
Q 013881 324 QFLLSCSLDKTIKVWFATDSGNLEVTYT-----------------------------------------HNEEHGVLALC 362 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 362 (434)
++|++++.|++|++||+.+.+.+..+.. ..+...+.+++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 7999999999999999987654433221 12334688899
Q ss_pred eccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc--cccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--FAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
++|++. +|++++.|++|++||+.+++....+ .|...|.+++|++++.|++++.|+.+++|++.++.
T Consensus 332 ~spdg~---~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 332 SSADGK---TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ECTTSS---EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EeCCCC---EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 887655 9999999999999999998776554 36788999999988889999999999999987654
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-39 Score=294.35 Aligned_cols=250 Identities=20% Similarity=0.280 Sum_probs=218.6
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
++.++|.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~--------------------------------- 50 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--------------------------------- 50 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE---------------------------------
Confidence 56778999999999999999999999999999999999999877654
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIR 296 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 296 (434)
+..|...|.++.|+++ +|++|+.|+.|++||+.++ +.+..+.+|...|.+++++ +++|++++.|++|+
T Consensus 51 ----~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 51 ----IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp ----EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ----eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence 4568889999999988 9999999999999999987 6778889999999999997 45899999999999
Q ss_pred EEeCCCC-eEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcE
Q 013881 297 VWNLETL-QCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 297 vwd~~~~-~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
+||++++ .+...+.+|...|.+++|+ +.+|++++.|++|++||+++......+.... ...+..+.+.+.++ +.+
T Consensus 123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~ 200 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPD-KPY 200 (304)
T ss_dssp EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTT-CCE
T ss_pred EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCC-CCE
Confidence 9999887 5667889999999999997 3689999999999999998776655544332 34577778777543 348
Q ss_pred EEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|++++.|++|++||+.+++.+..+. |...|.+++|+|++ +|++|+.||+|+|||+.+++++
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999999999998887776 57899999999999 9999999999999999988754
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.7e-39 Score=309.37 Aligned_cols=293 Identities=22% Similarity=0.364 Sum_probs=250.3
Q ss_pred CCcCCCCCCCCCcccccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE
Q 013881 90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (434)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s 169 (434)
.+|+.+............|...|+|+.+....+++|+.|+.|++||+.++ +.+..+.+|...|++++| ++++|++|+
T Consensus 114 ~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~ 190 (435)
T 1p22_A 114 SNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGS 190 (435)
T ss_dssp HHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred hhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEc
Confidence 45777766655666667788899999998888999999999999999998 899999999999999999 789999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCC
Q 013881 170 KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249 (434)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg 249 (434)
.||+|++||+.+++.+.. +..|...|.++.|+++.+++|+.||
T Consensus 191 ~dg~i~vwd~~~~~~~~~-------------------------------------~~~h~~~v~~l~~~~~~l~s~s~dg 233 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNT-------------------------------------LIHHCEAVLHLRFNNGMMVTCSKDR 233 (435)
T ss_dssp TTSCEEEEESSSCCEEEE-------------------------------------ECCCCSCEEEEECCTTEEEEEETTS
T ss_pred CCCeEEEEECCCCcEEEE-------------------------------------EcCCCCcEEEEEEcCCEEEEeeCCC
Confidence 999999999999887654 5578899999999999999999999
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEE
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC 329 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~ 329 (434)
.|++||+...... .....+.+|...|.++.++++++++++.||.|++||+++++++..+..|...|.++.+++++++++
T Consensus 234 ~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g 312 (435)
T 1p22_A 234 SIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSG 312 (435)
T ss_dssp CEEEEECSSSSCC-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred cEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEE
Confidence 9999999876321 223677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc---------ccccc-ccc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA---------ERGKI-FAK 399 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~-~~~ 399 (434)
+.|+.|++||++++..+..+..+. ..+.++++ + +.+|++|+.||.|++||+.++. .+..+ .|.
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~ 385 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--D---NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 385 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--C---SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred eCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--c---CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC
Confidence 999999999999988777766554 45778876 2 3389999999999999997655 33333 367
Q ss_pred CcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 400 QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 400 ~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
..|.+++| ++ +|++++.||+|++||+.+++.
T Consensus 386 ~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 386 GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 88999999 66 999999999999999987653
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.9e-38 Score=292.51 Aligned_cols=280 Identities=21% Similarity=0.282 Sum_probs=234.2
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC----ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
...|.++|+|++|+++ .+++|+.|++|+|||+.+. ..+...+.+|...|++++|+|++++|++++.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 3569999999999754 3678999999999998754 24678899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
+......... ...+...+..+.+.++ .|++++.|+.+++||
T Consensus 114 ~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 114 DLTTGTTTRR-------------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp ETTTTEEEEE-------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eecccceeee-------------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 9988766544 3345566777777776 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC----CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (434)
+.... .......+|...+..+.+.. .++++++.|+.|++||+++++++..+.+|...|.+++|+ +++|+++
T Consensus 157 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 157 TLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp TTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence 87653 44556678999999998852 378999999999999999999999999999999999998 6799999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc----------cc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF----------AK 399 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~ 399 (434)
+.|+.|++||+++...+..+.. ...+..+++.|+. .+++++.|+.|++||++++..+..+. |.
T Consensus 234 s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~ 306 (340)
T 4aow_A 234 GKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNR----YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEP 306 (340)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC---SSCEEEEEECSSS----SEEEEEETTEEEEEETTTTEEEEEECCC-------CCC
T ss_pred eCCCeEEEEEeccCceeeeecC---CceEEeeecCCCC----ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCC
Confidence 9999999999998766655443 3468888887754 36677789999999999876554432 46
Q ss_pred CcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 400 QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 400 ~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
..|++++|+|++ +|++|+.||.|+|||+.+|.
T Consensus 307 ~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 789999999999 99999999999999999986
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=302.46 Aligned_cols=314 Identities=18% Similarity=0.273 Sum_probs=259.1
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeC----CCCce-----EEEEecC----------ccccEEEEEccCCC
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTV----GDGFK-----LLTQLEG----------HQKVVSGITLPSGS 162 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~----~~~~~-----~~~~l~~----------h~~~V~~l~~s~~~ 162 (434)
...|..+|.|++|+++ .+++|+.|+.|++|++ .++.. ....+.. |...|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 3456689999999765 5778889999999999 87721 4555554 78899999999999
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecC-CceEEEEe--CCCEEEE-EcCCcEEEEECCCCceE-EecCCCCc------
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMIS--EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQ------ 231 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~------ 231 (434)
++|++++.||.|++|| .+++.+..+..+ ..+.++.+ ++.++++ +.++.|++||+.+++.. .+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 9999999999999999 667777777644 56666654 5666655 55899999999988776 45555555
Q ss_pred ---------EEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEe
Q 013881 232 ---------VYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 232 ---------v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd 299 (434)
+.++.|+++ .+++++.+|.|++||+... +....+..|...|.+++++ +++|++++.|+.|++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK----TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS----SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC----ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 889999888 9999999999999999987 6677788999999999996 56899999999999999
Q ss_pred CCCCeEEEEEccccccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 300 LETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
+++++.+..+..|...|.++.|++ .+|++++.|+.|++||+++...+..+..+. ..+.+++++|++. +|++++.
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~---~l~~~~~ 350 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRISQDGQ---KYAVAFM 350 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEECTTSS---EEEEEET
T ss_pred CCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEcCCCC---EEEEEEC
Confidence 999999999999999999999983 399999999999999998887666655443 4688899987655 9999999
Q ss_pred CCeEEEEeCCCCc--------------------ccccccc-c-C-cEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 379 DNSVRFYDLPSFA--------------------ERGKIFA-K-Q-EIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 379 dg~i~iwd~~~~~--------------------~~~~~~~-~-~-~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
||.|++||+.+++ .+..+.. . . .|++++|+|++ +|++++.||.|++|+++
T Consensus 351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999877 5555554 3 3 99999999999 99999999999999986
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-37 Score=305.73 Aligned_cols=308 Identities=23% Similarity=0.367 Sum_probs=261.6
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|...|.+++|+++ .+++++.|+.|++||... +.+..+.+|...|++++|+|++++|++++.|++|++||.. +
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~ 293 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-G 293 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C
Confidence 4567889999999765 478899999999999654 7888999999999999999999999999999999999964 5
Q ss_pred ceEEEEec-CCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 183 QCAGVINL-GGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
+.+..+.. ...+.++.+ ++.+++++ .++.|++|+........+.+|...|.+++|+|+ .|++++.|+.|++||.
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 56666654 345666543 56666654 588999999998888889999999999999998 9999999999999996
Q ss_pred CCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (434)
.. +.+..+.+|...|.+++++ +++|++++.|+.|++||. +++.+..+.+|...|.+++|+ +++|++++.|
T Consensus 374 ~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 374 NG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp TC-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CC-----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 43 5677788999999999996 568999999999999995 678889999999999999998 6799999999
Q ss_pred CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG 411 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg 411 (434)
+.|++||.. .+.+..+..+. ..+.+++|+|++. +|++++.|+.|++||.. ++.+..+. |...|++++|+|++
T Consensus 448 ~~v~~w~~~-~~~~~~~~~~~--~~v~~~~~spd~~---~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 448 KTVKLWNRN-GQLLQTLTGHS--SSVRGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp SEEEEEETT-SCEEEEEECCS--SCEEEEEECTTSC---EEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEECC-CCEEEEEcCCC--CCEEEEEEcCCCC---EEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEcCCC
Confidence 999999964 45555555544 4688999987665 99999999999999964 55555544 67899999999999
Q ss_pred -EEEEeCCCCCEEEEEcc
Q 013881 412 -LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd~~ 428 (434)
+|++++.||.|+|||..
T Consensus 521 ~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SCEEEEETTSEEEEECTT
T ss_pred CEEEEEECcCEEEEEeCC
Confidence 99999999999999964
No 25
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=296.01 Aligned_cols=294 Identities=19% Similarity=0.295 Sum_probs=244.3
Q ss_pred CCCCCCCCCccccccccc--ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecC-ccccEEEEEccCCCCEEEEEE
Q 013881 93 RAGNSKNSNINNRAVIKT--DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSGS 169 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~--~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~s~s 169 (434)
+..+..+.+......|.. .+.++.|+++.+++++.|+.|++||+.++ +....+.. |...|++++|+|++++|++++
T Consensus 75 r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 75 RRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence 333344444444444544 46678999999999999999999999998 66666655 899999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCC
Q 013881 170 KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249 (434)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg 249 (434)
.||.|++||+.+++.+.. +..|...|.++.|+++.|++++.||
T Consensus 154 ~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~l~~~~~dg 196 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRT-------------------------------------MAGHQARVGCLSWNRHVLSSGSRSG 196 (401)
T ss_dssp TTSCEEEEETTTCCEEEE-------------------------------------ECCCSSCEEEEEEETTEEEEEETTS
T ss_pred CCCeEEEEECcCCeEEEE-------------------------------------ecCCCCceEEEEECCCEEEEEcCCC
Confidence 999999999998876654 5578999999999999999999999
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC---C
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD---Q 324 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~---~ 324 (434)
.|++||++... .....+.+|...|.++.++ +++|++++.|+.|++||+++++.+..+..|...|.+++|++ .
T Consensus 197 ~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 197 AIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp EEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT
T ss_pred CEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC
Confidence 99999998543 5577788999999999996 56999999999999999999999999999999999999983 4
Q ss_pred EEEEEe--CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE--EeCCCeEEEEeCCCCcccccc---c
Q 013881 325 FLLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC--SCNDNSVRFYDLPSFAERGKI---F 397 (434)
Q Consensus 325 ~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~---~ 397 (434)
++++++ .|+.|++||+.+...+..+. ....+.+++|+++.. ++++ |+.||.|++||+.+++..... .
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~---~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSK---EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSS---EEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCC---eEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 666665 79999999999887666553 234689999987765 7777 448999999999986554432 3
Q ss_pred ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 398 AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 398 ~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|...|.+++|+|++ +|++++.||.|++|++.+++.+
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 67889999999999 9999999999999999988754
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-37 Score=294.48 Aligned_cols=276 Identities=21% Similarity=0.379 Sum_probs=227.4
Q ss_pred ccccceEEEEEeCC-cEEEecCCCeEEEEeCCCCceEEEEecCccc------------------cEEEEEccCCCCEEEE
Q 013881 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK------------------VVSGITLPSGSDKLYS 167 (434)
Q Consensus 107 ~~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~------------------~V~~l~~s~~~~~l~s 167 (434)
.|...|.|++|+++ ..++.+.++.+++|++.++ +.+..+.+|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 58899999999765 4444456889999999998 77777776643 4999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEE
Q 013881 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG 245 (434)
Q Consensus 168 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g 245 (434)
|+.|++|+|||+.+++.+.. +.+|...|.+++|+++ .|+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~h~~~v~~~~~~p~~~~l~s~ 183 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMI-------------------------------------LQGHEQDIYSLDYFPSGDKLVSG 183 (393)
T ss_dssp EETTSCEEEEETTTTEEEEE-------------------------------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEE-------------------------------------EccCCCCEEEEEEcCCCCEEEEe
Confidence 99999999999998876543 5689999999999988 99999
Q ss_pred eCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCCeEEEEE-------cccccc
Q 013881 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTL-------TEHTSV 315 (434)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~ 315 (434)
+.|++|++||++++ +....+. +...+.+++++ +++|++++.|+.|++||+++++.+..+ .+|...
T Consensus 184 s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 184 SGDRTVRIWDLRTG----QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp ETTSEEEEEETTTT----EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred cCCCcEEEEECCCC----eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 99999999999876 4444443 45678888885 468999999999999999999988777 578999
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc------------eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 316 VMSLLCW--DQFLLSCSLDKTIKVWFATDSGN------------LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 316 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
|.+++|+ +++|++++.|+.|++||+++... ...+.. +...+.++++.++.. +|++++.|+.
T Consensus 259 v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~---~l~sgs~D~~ 333 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDE---YILSGSKDRG 333 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGC---EEEEEETTSE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec--ccCcEEEEEECCCCC---EEEEEeCCCe
Confidence 9999998 67999999999999999976432 122222 334688899887665 9999999999
Q ss_pred EEEEeCCCCccccccc-ccCcEEEEEecC------Cc-EEEEeCCCCCEEEEEccCC
Q 013881 382 VRFYDLPSFAERGKIF-AKQEIRAIQLGP------GG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~-~~~~v~~~~~sp------dg-~l~s~~~dg~i~iwd~~~g 430 (434)
|++||+.+++.+..+. |...|.+++|++ ++ +|++|+.||+|+||++.+.
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999998877765 678899999886 67 9999999999999998754
No 27
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=282.24 Aligned_cols=291 Identities=20% Similarity=0.332 Sum_probs=238.8
Q ss_pred CCCCCCCCCccccccccc--ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEe--cCccccEEEEEccCCCCEEEEE
Q 013881 93 RAGNSKNSNINNRAVIKT--DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSG 168 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~--~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l--~~h~~~V~~l~~s~~~~~l~s~ 168 (434)
|..+..|.++...+...+ ...|++|+++++++.+.|++|+|||+.++ ++++.+ .+|...|++++|+|++++|++|
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEE
Confidence 444555666665555444 35789999999888889999999999998 777665 4678899999999999999999
Q ss_pred ECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCC
Q 013881 169 SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248 (434)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~d 248 (434)
+.||+|++||+++++++.. +.+|...+.++.+.+..+++++.+
T Consensus 86 s~Dg~v~iw~~~~~~~~~~-------------------------------------~~~h~~~~~~~~~~~~~l~s~~~~ 128 (318)
T 4ggc_A 86 TSSAEVQLWDVQQQKRLRN-------------------------------------MTSHSARVGSLSWNSYILSSGSRS 128 (318)
T ss_dssp ETTSEEEEEETTTTEEEEE-------------------------------------EECCSSCEEEEEEETTEEEEEETT
T ss_pred ECCCcEEEeecCCceeEEE-------------------------------------ecCccceEEEeecCCCEEEEEecC
Confidence 9999999999999987765 457888899999999999999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeE----EEEEccccccEEEEEEc
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC----IQTLTEHTSVVMSLLCW 322 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~ 322 (434)
+.+++|+..... .....+.+|...+..+.+. +++|++++.|+.|++||+++++. ......+...|.++.+.
T Consensus 129 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 129 GHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp SEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred CceEeeecCCCc---eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 999999988764 5567788999999999885 67999999999999999988653 45566788899999987
Q ss_pred ---CCEE--EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE--EeCCCeEEEEeCCCCccccc
Q 013881 323 ---DQFL--LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC--SCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 323 ---~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~ 395 (434)
+..+ ++++.++.|++||........... ....+..+.+.+... .+++ |+.|+.|++||+.+++++..
T Consensus 206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~---~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYK---ELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp TTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTT---EEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred CCCCcEEEEEecCCCCEEEEEeccccccccccc---ceeeeeeeeeccccc---ceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 3333 456678999999998776544332 234577788877654 4444 34799999999999999888
Q ss_pred cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 396 IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 396 ~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+. |.+.|++++|+|++ +|+||+.||+|+|||+.+.
T Consensus 280 l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 76 68899999999999 9999999999999999764
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.5e-37 Score=286.75 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=221.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+...++.+|.+.|++++|+|++++|++++.||+|+|||+.+++.+..
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~--------------------------------- 92 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--------------------------------- 92 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE---------------------------------
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE---------------------------------
Confidence 67788999999999999999999999999999999999998876654
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-CCEEEEecCCCcEEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRV 297 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~v 297 (434)
+..|...|.+++|+|+ +|++|+.|+.|++|++............+.+|...|.++.+. ++.+++++.|++|++
T Consensus 93 ----~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~ 168 (340)
T 1got_B 93 ----IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp ----EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ----eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEE
Confidence 4567888999999998 999999999999999987654445667788999999999986 457999999999999
Q ss_pred EeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 298 WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
||+++++++..+.+|...|.+++++ +++|++++.|+.|++||+++......+..+. ..+.+++|+|++. +|++
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~---~l~s 243 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGN---AFAT 243 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSS---EEEE
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc--CCEEEEEEcCCCC---EEEE
Confidence 9999999999999999999999998 6799999999999999999887776666554 4588999988655 9999
Q ss_pred EeCCCeEEEEeCCCCccccccccc---CcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 376 SCNDNSVRFYDLPSFAERGKIFAK---QEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 376 ~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
++.|++|++||+.+++.+..+.+. ..|++++|+|++ +|++|+.||.|++||+.+++.
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE
Confidence 999999999999998877666543 479999999999 999999999999999987764
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-37 Score=296.34 Aligned_cols=249 Identities=24% Similarity=0.430 Sum_probs=221.6
Q ss_pred EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 142 ~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
....+.+|..+|++++|+|++.+|++|+.|++|+|||+.+++.+..
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~---------------------------------- 145 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---------------------------------- 145 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE----------------------------------
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------------------------
Confidence 3456789999999999999999999999999999999999876654
Q ss_pred eEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEE
Q 013881 222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRV 297 (434)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v 297 (434)
+.+|...|.+++|+++ +|++|+.|++|++||+... +.+..+.+|...|.++.|+ +++|++++.|++|++
T Consensus 146 ---l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~ 218 (410)
T 1vyh_C 146 ---LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218 (410)
T ss_dssp ---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS----CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ---EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 5689999999999988 9999999999999999876 6778889999999999996 569999999999999
Q ss_pred EeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC-------
Q 013881 298 WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE------- 368 (434)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 368 (434)
||+++++++..+.+|...|.++.++ +.+|++++.|+.|++||+.+......+..+. ..+.+++|.|+..
T Consensus 219 wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISEA 296 (410)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGC
T ss_pred EECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccchhhh
Confidence 9999999999999999999999998 6799999999999999999887776665554 4588888887532
Q ss_pred ----------CCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 369 ----------GKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 369 ----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+.+|++|+.|+.|++||+.++..+..+. |...|++++|+|++ +|++|+.||+|++||+.+++++
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 14589999999999999999998877765 67889999999999 9999999999999999887753
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-37 Score=294.09 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=241.4
Q ss_pred ccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCc-----eEEEEecCccccEEEEEccCC----C---CEEEEEECCC
Q 013881 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF-----KLLTQLEGHQKVVSGITLPSG----S---DKLYSGSKDE 172 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~-----~~~~~l~~h~~~V~~l~~s~~----~---~~l~s~s~dg 172 (434)
...|..+|+|++|.+..+++++.|+.|++|++.++. +.+..+.+|...|++++|+|+ + ++|++++.|+
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 457889999999999889999999999999999872 268888899999999999999 9 9999999999
Q ss_pred cEEEEECCCCce-----EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCC-----CCcEEEEEEe----
Q 013881 173 TVRVWDCASGQC-----AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-----VGQVYAMAVG---- 238 (434)
Q Consensus 173 ~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~-----~~~v~~l~~~---- 238 (434)
.|++||+.+++. +. .+..| ...|.+++|+
T Consensus 92 ~i~iw~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFE-------------------------------------KLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp CEEEEEEEECTTTCCEEEE-------------------------------------EECCSCTTGGGSCEEEEEEECCC-
T ss_pred CEEEEEccCCcccccccce-------------------------------------eecccccccCCCcEEEEEEeeccC
Confidence 999999987764 32 24556 5899999999
Q ss_pred CC--E-EEEEeCCCcEEEEEcCC------CCCc-cccceee-------cCccceEEEEEECCC-EEEEecCCCcEEEEeC
Q 013881 239 ND--L-LFAGTQDGAILAWKFNV------TTNC-FEPAASL-------KGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNL 300 (434)
Q Consensus 239 ~~--~-l~~g~~dg~i~vwd~~~------~~~~-~~~~~~~-------~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~ 300 (434)
++ . |++++.||.|++||+.. .... +.+...+ ..|...|.++.++++ +|++++.|+.|++||+
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISEL 214 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEET
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEEC
Confidence 77 7 99999999999999987 4211 1111155 458889999999743 9999999999999999
Q ss_pred CCCeEEEEEcc---c---cccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceEEEeeec-----------CCccE
Q 013881 301 ETLQCIQTLTE---H---TSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHN-----------EEHGV 358 (434)
Q Consensus 301 ~~~~~~~~~~~---~---~~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~-----------~~~~~ 358 (434)
++++.+..+.. | ...|.+++|+ +++|++++.| +.|++||+++...+..+.... +...+
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE
Confidence 99999999998 9 9999999997 7899999999 999999999887776665510 33568
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-------c---------------cCcEEEEEecCCc-----
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-------A---------------KQEIRAIQLGPGG----- 411 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------------~~~v~~~~~spdg----- 411 (434)
.+++|+|+.. +|++++.|+.|++||+.+++.+..+. + ...|++++|+|++
T Consensus 295 ~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 295 MSLSFNDSGE---TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp EEEEECSSSS---EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred EEEEECCCCC---EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 9999987655 99999999999999999998887776 4 7889999999995
Q ss_pred ------EEEEeCCCCCEEEEEccCCc
Q 013881 412 ------LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 412 ------~l~s~~~dg~i~iwd~~~g~ 431 (434)
+|++++.||.|++|++.+|+
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 89999999999999999875
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.6e-37 Score=311.82 Aligned_cols=280 Identities=21% Similarity=0.301 Sum_probs=232.3
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC----ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
...|.+.|+|++|+++ .+++|+.|+.|++|++.+. ......+.+|...|++++|+|++++|+||+.|++|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4579999999999753 3788999999999998753 14677899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 013881 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd 255 (434)
|+.+++.+.. +.+|...|.+++|+++ .|++++.|++|++||
T Consensus 458 d~~~~~~~~~-------------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 458 DLAAGVSTRR-------------------------------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp ETTTTEEEEE-------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCcceeE-------------------------------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 9998876654 5689999999999998 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC----CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (434)
...... ........+|...|.++.+++ ..|++++.|++|++||++++++...+.+|...|.+++++ +++|+++
T Consensus 501 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 501 TLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp TTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 865311 112223357899999999975 379999999999999999999999999999999999998 6799999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-----------
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA----------- 398 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------- 398 (434)
+.|+.|++||+++...+..+ .....+.+++|+|+.. +++++ .++.|++||+.+++.+..+..
T Consensus 580 ~~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~---~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKKLYSL---EANSVIHALCFSPNRY---WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp ETTSBCEEEETTTTEEEECC---BCSSCEEEEEECSSSS---EEEEE-ETTEEEEEETTTTEEEEEECCCCC--------
T ss_pred eCCCeEEEEECCCCceEEEe---cCCCcEEEEEEcCCCc---EEEEE-cCCCEEEEECCCCCChhhhccccccccccccc
Confidence 99999999999887654433 3345688999987654 55554 577899999999876654431
Q ss_pred ---------cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 399 ---------KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 399 ---------~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.-.+++++|+|+| +|++|+.||+|+||++..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 1137899999999 999999999999999853
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-36 Score=279.88 Aligned_cols=309 Identities=18% Similarity=0.266 Sum_probs=254.8
Q ss_pred ccccceEEEEEeCCcEE--EecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 107 VIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~~~--~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
.+..+|.+++|+++... ++..++.+.+|......+.+. ..+|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 45678999999776533 455566677777666534444 447999999999999999999999 99999999987753
Q ss_pred ---EEEEe---cCCceEEEEe--CCCEEEEE-cCCcEEEEECCCCce---EEecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 013881 185 ---AGVIN---LGGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTD---LSLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (434)
Q Consensus 185 ---~~~~~---~~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~---~~~~~~~~~v~~l~~~~~--~l~~g~~dg~ 250 (434)
+..+. ....+.++.+ ++.+++++ .++.|++|++.+++. ..+..|...|.+++|+++ +|++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 33332 3456666654 56666664 588999999998862 367789999999999988 9999999999
Q ss_pred EEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEE
Q 013881 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (434)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (434)
|++||+++. +....+..|...+.++.++ +++|++++.|+.|++||+++++.+..+. +...+.+++++ +++|
T Consensus 165 v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 165 IAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEE
T ss_pred EEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEE
Confidence 999999887 6777888899999999996 5699999999999999999999888874 77889999997 6799
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEE
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQ 406 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 406 (434)
++++.|+.|++||+++.... .+. .+...+..++++++.. +|++++.||.|++||+.+++.+....+...|.+++
T Consensus 240 ~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~ 313 (337)
T 1gxr_A 240 AVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313 (337)
T ss_dssp EEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCC---EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE
Confidence 99999999999999876543 333 3345689999987655 89999999999999999998887777899999999
Q ss_pred ecCCc-EEEEeCCCCCEEEEEcc
Q 013881 407 LGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 407 ~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
|+|++ +|++++.||.|++|++.
T Consensus 314 ~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 314 ISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ECTTSCEEEEEETTSCEEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEEEe
Confidence 99999 99999999999999974
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-37 Score=291.90 Aligned_cols=279 Identities=14% Similarity=0.186 Sum_probs=230.0
Q ss_pred cccccceEEEEEeC----C--cEEEecCCCeEEEEeCCCCceEEEEecC-----ccccEEEEEccCC----CCEEEEEEC
Q 013881 106 AVIKTDILCRNWVQ----G--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-----HQKVVSGITLPSG----SDKLYSGSK 170 (434)
Q Consensus 106 ~~~~~~i~c~~~~~----~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~-----h~~~V~~l~~s~~----~~~l~s~s~ 170 (434)
..|..+|+|++|++ + .+++++.++.|++||+.++ +.+..+.. |...|++++|+|+ +++|++++.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 46889999999985 2 3777778889999999976 55555554 5578999999998 679999999
Q ss_pred CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC-C--EEEEEeC
Q 013881 171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D--LLFAGTQ 247 (434)
Q Consensus 171 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~ 247 (434)
||.|++||+.+++.+.. +.+|...|.+++|++ + +|++++.
T Consensus 94 dg~i~v~d~~~~~~~~~-------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~ 136 (366)
T 3k26_A 94 RGIIRIINPITMQCIKH-------------------------------------YVGHGNAINELKFHPRDPNLLLSVSK 136 (366)
T ss_dssp TCEEEEECTTTCCEEEE-------------------------------------EESCCSCEEEEEECSSCTTEEEEEET
T ss_pred CCEEEEEEchhceEeee-------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999998877654 457899999999998 5 9999999
Q ss_pred CCcEEEEEcCCCCCccccceee---cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcc-----------
Q 013881 248 DGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE----------- 311 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~---~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----------- 311 (434)
||.|++||++.. +....+ ..|...|.++.|+ +++|++++.||.|++||+++++.+..+..
T Consensus 137 dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 137 DHALRLWNIQTD----TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp TSCEEEEETTTT----EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred CCeEEEEEeecC----eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 999999999887 555555 6899999999997 56999999999999999998765544433
Q ss_pred -----------------ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCc--------------eEEEeeecCCccEEE
Q 013881 312 -----------------HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN--------------LEVTYTHNEEHGVLA 360 (434)
Q Consensus 312 -----------------~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~ 360 (434)
|...|.++.|++++|++++.|+.|++||+.+... +..+..+ ...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~ 290 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWY 290 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSC
T ss_pred cccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEE
Confidence 9999999999999999999999999999987654 2233323 345777
Q ss_pred EEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc----ccc-c--cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG----KIF-A--KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~-~--~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
++++++.. +.+|++++.||.|++||+.+++... .+. + ...|++++|+|++ +|++++.||.|++||+.+
T Consensus 291 ~~~s~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 291 MRFSMDFW-QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCCEECTT-SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEcCCCC-CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 78877632 3399999999999999999987554 333 2 5889999999999 999999999999999864
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=278.72 Aligned_cols=282 Identities=15% Similarity=0.226 Sum_probs=243.4
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|..+|+|++|+++ .+++++.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 5678999999999765 4777889999999999998 899999999999999999999999999999999999999998
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCC-----CcEEEEE
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-----GAILAWK 255 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d-----g~i~vwd 255 (434)
+.+..+. +...|.+++|+++ .+++++.+ +.|.+||
T Consensus 107 ~~~~~~~--------------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d 148 (369)
T 3zwl_B 107 QCVATWK--------------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148 (369)
T ss_dssp CEEEEEE--------------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEE
T ss_pred cEEEEee--------------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEE
Confidence 8765532 6678899999998 88999988 9999999
Q ss_pred cCCCCCcc-------ccceeecCccc--eEEEEEEC--CCEEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc-
Q 013881 256 FNVTTNCF-------EPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 256 ~~~~~~~~-------~~~~~~~~h~~--~v~~l~~~--~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~- 322 (434)
+....... .....+..|.. .+.+++++ +++|++++.||.|++||+++ .+.+..+..|...|.+++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 228 (369)
T 3zwl_B 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP 228 (369)
T ss_dssp EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT
T ss_pred ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC
Confidence 98764211 23344555655 88999986 56899999999999999999 88999999999999999997
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC--------------eEEEEeC
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN--------------SVRFYDL 387 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~ 387 (434)
+++|++++.|+.|++||+++...+..+. ....+..+++.|+.. ++++++.++ .|++||+
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKE---FIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSS---EEEEEECCC-------------CEEEEEET
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCc---eEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 6799999999999999999887665554 345688888887665 899998888 8999999
Q ss_pred CCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 388 PSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 388 ~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.+++.+..+. |...|++++|+|++ +|++++.||.|+||++.++.
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 9998887766 57899999999999 99999999999999998764
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.8e-36 Score=299.30 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=254.3
Q ss_pred cccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCCceEEEEecCccc---cEEEEEccCC-CCEEEEEECCCcEEE
Q 013881 104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSG-SDKLYSGSKDETVRV 176 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~---~V~~l~~s~~-~~~l~s~s~dg~v~i 176 (434)
....|...|.++.|+++ .+++++.|+.|++||+.++ +.+..+.+|.. .|++++|+|+ +++|++++.|+.|++
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 34568889999999776 4888999999999999987 89999999999 9999999999 999999999999999
Q ss_pred EECCCCceEEEE-----ecCCceEEEEe-CCCEEEEE-cCCcEEEEECCCCceE-EecCC----CCcEEEEEEeCC-EEE
Q 013881 177 WDCASGQCAGVI-----NLGGEVGCMIS-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP----VGQVYAMAVGND-LLF 243 (434)
Q Consensus 177 wd~~~~~~~~~~-----~~~~~~~~~~~-~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~----~~~v~~l~~~~~-~l~ 243 (434)
||+.+++.+..+ .....+.++.+ ++.+++++ .++.|++||+.+++.. .+..+ ...+.++.+... .++
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred EECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 999999999988 45567777765 66666665 5889999999988776 44444 467888888543 999
Q ss_pred EEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE---------------------------------C-CCEEEEe
Q 013881 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---------------------------------G-ANKLYSG 289 (434)
Q Consensus 244 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~---------------------------------~-~~~l~s~ 289 (434)
+++.|+.|++||+... ++...+.+|...|.++.+ . ++.|+++
T Consensus 314 ~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~ 389 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHD----EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 389 (615)
T ss_dssp EEETTSCEEEEETTEE----EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred EEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence 9999999999999875 555566666665555555 2 3455566
Q ss_pred cCCCcEEEEeCC----------------------------------CCeEEEEEccccccEEEEEEcCCEEEEEeC-CCc
Q 013881 290 SMDNSIRVWNLE----------------------------------TLQCIQTLTEHTSVVMSLLCWDQFLLSCSL-DKT 334 (434)
Q Consensus 290 s~dg~i~vwd~~----------------------------------~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~-dg~ 334 (434)
+.|+.|++||+. +++.+..+. |...+.++++++++|++++. |+.
T Consensus 390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNT 468 (615)
T ss_dssp ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSC
T ss_pred eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeecCCCe
Confidence 666666666554 233333333 66778888888889999999 999
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc--ccCcEEEEEecC---
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--AKQEIRAIQLGP--- 409 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp--- 409 (434)
|++||+.+..... .....+...+.+++++|++. +|++++.|+.|++||+.+++.+..+. |...|++++|+|
T Consensus 469 i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 469 IQVFKLSDLEVSF-DLKTPLRAKPSYISISPSET---YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp EEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred EEEEECCCccccc-cccCCccCceEEEEECCCCC---EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 9999997654332 22233446799999987665 99999999999999999999888876 788999999999
Q ss_pred -------Cc-EEEEeCCCCCEEEEEccCC
Q 013881 410 -------GG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 410 -------dg-~l~s~~~dg~i~iwd~~~g 430 (434)
++ +|++++.||.|++||+.++
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCT
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99 9999999999999999987
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=271.42 Aligned_cols=282 Identities=20% Similarity=0.242 Sum_probs=240.8
Q ss_pred ccccccccceEEEEEeCC-cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 103 NNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
.....|.++|.|++|.++ .+++++.|+.|++||+.++ +....+..|...|.+++|+|++++|++++.|+.|++|++..
T Consensus 12 ~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 12 ATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 335678899999999544 5778999999999999887 88889999999999999999999999999999999999876
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~ 261 (434)
..... ....+..|...|.++.|.++.+++++.|+.|++|| ..
T Consensus 91 ~~~~~----------------------------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~-- 132 (313)
T 3odt_A 91 TSGED----------------------------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG-- 132 (313)
T ss_dssp CTTSC----------------------------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT--
T ss_pred cCCCC----------------------------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC--
Confidence 53211 11246789999999999888999999999999999 22
Q ss_pred ccccceeecCccceEEEEEE---CCCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc-CCEEEEEeCCCcEE
Q 013881 262 CFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW-DQFLLSCSLDKTIK 336 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~s~s~dg~i~ 336 (434)
.....+..|...+.++.+ +++++++++.|+.|++|| ..+.+..+.. |...+.+++++ ...+++++.|+.|+
T Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 208 (313)
T 3odt_A 133 --SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208 (313)
T ss_dssp --EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEE
T ss_pred --cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEE
Confidence 567788889999998887 577999999999999999 5567777877 99999999998 45699999999999
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCcEEEE
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGGLFFT 415 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg~l~s 415 (434)
+||+++.+.+..+..+. ..+.+++++|+. .|++++.||.|++||+.+++....+.. ...|.+++|+|++.+++
T Consensus 209 i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 209 LVDMHTGDVLRTYEGHE--SFVYCIKLLPNG----DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV 282 (313)
T ss_dssp EEETTTCCEEEEEECCS--SCEEEEEECTTS----CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred EEECCchhhhhhhhcCC--ceEEEEEEecCC----CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE
Confidence 99999888777766554 468899998765 388999999999999999988877654 66899999999996677
Q ss_pred eCCCCCEEEEEccCCccc
Q 013881 416 GDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 416 ~~~dg~i~iwd~~~g~~~ 433 (434)
++.||.|++||+.+++++
T Consensus 283 ~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 283 GSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EETTSCEEEEESCGGGCC
T ss_pred EeCCCcEEEEeCCCCcee
Confidence 999999999999988764
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=299.91 Aligned_cols=315 Identities=13% Similarity=0.167 Sum_probs=255.4
Q ss_pred cccceEEEEEeCC---cEEEe----------cCCCeEEEEeCCCCc--eEEEEecCccccEEEEEccCCCCEEEEEECCC
Q 013881 108 IKTDILCRNWVQG---NCMYG----------EKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172 (434)
Q Consensus 108 ~~~~i~c~~~~~~---~~~~g----------~~d~~i~vwd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg 172 (434)
+...|.|++|+++ .+++| +.|+.|++||+.++. +++..+ .|...|++++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 3457889999776 35666 789999999999763 234444 5899999999999999999999999
Q ss_pred cEEEEECCC----CceEEEEec-CCceEEEEe--C-CCEEEEE-cCCcEEEEECCCCc------eE----EecCCCCcEE
Q 013881 173 TVRVWDCAS----GQCAGVINL-GGEVGCMIS--E-GPWIFIG-VTNFVKAWNTQTNT------DL----SLSGPVGQVY 233 (434)
Q Consensus 173 ~v~iwd~~~----~~~~~~~~~-~~~~~~~~~--~-~~~l~~~-~~~~i~~w~~~~~~------~~----~~~~~~~~v~ 233 (434)
.|++||+.+ .+.+..+.. ...+.++.+ + +.+++++ .++.|++||+.+++ .. ....|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999988 346666553 355666654 3 5666665 58899999999876 22 2357899999
Q ss_pred EEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCc------cceEEEEEECC---CEEEEecCCC---cEEEE
Q 013881 234 AMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH------SLAVVSLVVGA---NKLYSGSMDN---SIRVW 298 (434)
Q Consensus 234 ~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h------~~~v~~l~~~~---~~l~s~s~dg---~i~vw 298 (434)
+++|+++ +|++++.|+.|++||++.. +....+..+ ...|.+++|++ .++++++.|+ .|++|
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 9999986 8999999999999999887 555666555 78899999974 4899999999 99999
Q ss_pred eCCCC-eEEEEEc-cccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 299 NLETL-QCIQTLT-EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 299 d~~~~-~~~~~~~-~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
|++++ +++..+. +|...|.+++|+ +++|++++.|+.|++||+++.+.+..+..+. ..+.+++|+|+.+ .+|
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~--~~l 321 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--NWCFKTKFAPEAP--DLF 321 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--SCCCCEEECTTCT--TEE
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--CceEEEEECCCCC--CEE
Confidence 99986 6778888 899999999996 5799999999999999999888777766554 4578888887652 389
Q ss_pred EEEeCCCeEEEEeCCCCccccccc------------------------------------ccCcEEEEEecCCc-EEEEe
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIF------------------------------------AKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~------------------------------------~~~~v~~~~~spdg-~l~s~ 416 (434)
++++.|+.|++||+.+........ +...+.+++|+|+| +|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 999999999999998765433210 34567799999999 99999
Q ss_pred CCCCCEEEEEccCCc
Q 013881 417 DGTGQVRVWQWCNGP 431 (434)
Q Consensus 417 ~~dg~i~iwd~~~g~ 431 (434)
+.|+.|+||++.+++
T Consensus 402 ~~d~~v~~w~~~~~~ 416 (416)
T 2pm9_A 402 PDGKGVSITNPKISG 416 (416)
T ss_dssp TTSSCBCCBCCCCC-
T ss_pred CCCCeEEEEEeccCC
Confidence 999999999998764
No 38
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=277.58 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=215.3
Q ss_pred eEEEEecCccccEEEEEccCC----CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSG----SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~----~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~ 216 (434)
.+.+.+++|.+.|++++|+|+ +.+|+||+.|++|+|||+.+++....
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------- 73 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------- 73 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-----------------------------
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-----------------------------
Confidence 455677899999999999874 67999999999999999877653321
Q ss_pred CCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCC
Q 013881 217 TQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (434)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 292 (434)
..+.+|...|.++.++++ ++++++.|++|++||+.++ +.+..+..|...+.+++|+ +++|++++.|
T Consensus 74 ------~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 74 ------WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp ------EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred ------eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 236789999999999988 9999999999999999987 6677788888888888886 5699999999
Q ss_pred CcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
+.|++||+++++....+..|...|.+++|+ +++|++++.|+.|++||+++.+.+..+..+. ..+.+++|+|++.
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~-- 219 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQ-- 219 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCCCEEEECTTSC--
T ss_pred CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC--CceeEEEEcCCCC--
Confidence 999999999999999999999999999998 6799999999999999999887766665544 4588889987655
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|++++.|+.|++||+.+++....+. |...|.+++|+|++ +|++++.|++|+|||+.+++.+
T Consensus 220 -~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 220 -LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp -EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred -EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 99999999999999999988777765 57889999999999 9999999999999999987653
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-35 Score=319.97 Aligned_cols=323 Identities=16% Similarity=0.235 Sum_probs=267.7
Q ss_pred ccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|...|+|++|+++. +++|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++|+|||+.++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 45788999999997764 777889999999999998 889999999999999999999999999999999999999999
Q ss_pred ceEEEEecC-CceEEEEe----CCCEEEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 013881 183 QCAGVINLG-GEVGCMIS----EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (434)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~----~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~v 253 (434)
+.+..+..+ ..+.++.+ +..++++ +.++.|++||+.++... .+.+|...|.+++|+++ .|++++.||.|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 999988765 45666655 3335555 45889999999998876 77899999999999998 9999999999999
Q ss_pred EEcCCCCCccc--------------------------------------------------cc-eeecCccceEEEEEEC
Q 013881 254 WKFNVTTNCFE--------------------------------------------------PA-ASLKGHSLAVVSLVVG 282 (434)
Q Consensus 254 wd~~~~~~~~~--------------------------------------------------~~-~~~~~h~~~v~~l~~~ 282 (434)
||+........ .. ....+|...|.++.++
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 99876421000 00 0112677788888886
Q ss_pred --CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC---------------
Q 013881 283 --ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS--------------- 343 (434)
Q Consensus 283 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~--------------- 343 (434)
+.++++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++||+.+.
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 5689999999999999999999999999999999999998 679999999999999986421
Q ss_pred ----------------------------------------------------------------CceEEEeeecCCccEE
Q 013881 344 ----------------------------------------------------------------GNLEVTYTHNEEHGVL 359 (434)
Q Consensus 344 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 359 (434)
.....+ ..+...+.
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--~~h~~~v~ 1007 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--VGHKKAVR 1007 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--CCCSSCCC
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--ccCCCceE
Confidence 000000 01223456
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+++|+|++. +|++++.|+.|++||+.+++......+...|.+++|+|++.+++++.||.|++||+.+++.+
T Consensus 1008 ~l~~s~dg~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1008 HIQFTADGK---TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CEEECSSSS---CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred EEEECCCCC---EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 677766544 89999999999999999998888778899999999999888899999999999999988754
No 40
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-35 Score=298.72 Aligned_cols=320 Identities=12% Similarity=0.128 Sum_probs=249.2
Q ss_pred ccccc---ceEEEEEeCC---cEEEecCCCeEEEEeCCCCceEEEEe-c---CccccEEEEEccCCCCEEEEEECCCcEE
Q 013881 106 AVIKT---DILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQL-E---GHQKVVSGITLPSGSDKLYSGSKDETVR 175 (434)
Q Consensus 106 ~~~~~---~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~~~~~~~l-~---~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 175 (434)
..|.. +|.|++|+++ .+++++.|+.|++||+.++ +.+..+ . +|...|.+++|+ ++++|++++.|+.|+
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~ 277 (615)
T 1pgu_A 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIR 277 (615)
T ss_dssp CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEE
T ss_pred cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEE
Confidence 45777 8999999766 4777899999999999998 888888 6 899999999999 999999999999999
Q ss_pred EEECCCCceEEEEecC-----CceEEEE-eCCCEEEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC-------
Q 013881 176 VWDCASGQCAGVINLG-----GEVGCMI-SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND------- 240 (434)
Q Consensus 176 iwd~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~------- 240 (434)
+||+.+++.+..+... ..+.++. +++.++++ +.++.|++||+.+++.. .+.+|...|.+++| ++
T Consensus 278 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~d 356 (615)
T 1pgu_A 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYD 356 (615)
T ss_dssp EEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETT
T ss_pred EEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCC
Confidence 9999999999988876 3344333 35666655 55889999999886654 56666666666666 54
Q ss_pred ----------------------------EEEEEeCCCcEEEEEcCCCCC------------------------------c
Q 013881 241 ----------------------------LLFAGTQDGAILAWKFNVTTN------------------------------C 262 (434)
Q Consensus 241 ----------------------------~l~~g~~dg~i~vwd~~~~~~------------------------------~ 262 (434)
.|++++.|+.|++|++..... .
T Consensus 357 g~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (615)
T 1pgu_A 357 GRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 436 (615)
T ss_dssp SCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTT
T ss_pred CeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccC
Confidence 444455555555554432110 0
Q ss_pred cccceeecCccceEEEEEECCCEEEEecC-CCcEEEEeCCCCeEE-EEEccccccEEEEEEc--CCEEEEEeCCCcEEEE
Q 013881 263 FEPAASLKGHSLAVVSLVVGANKLYSGSM-DNSIRVWNLETLQCI-QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vw 338 (434)
.+.+..+ .|...+.++++++++|++++. |+.|++||+.+++.. ..+..|...|.+++|+ +++|++++.|+.|++|
T Consensus 437 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 437 GDIIKSV-RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp CCEEEEE-ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred Cceeeec-ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEe
Confidence 0111111 256778889999889999999 999999999988776 6778899999999997 7899999999999999
Q ss_pred EcCCCCceEEEeeecCCccEEEEEeccCCC-------CCcEEEEEeCCCeEEEEeCCCC-ccccccc-ccCcEEEEEecC
Q 013881 339 FATDSGNLEVTYTHNEEHGVLALCGMPDSE-------GKPVLLCSCNDNSVRFYDLPSF-AERGKIF-AKQEIRAIQLGP 409 (434)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp 409 (434)
|+.+.+.+..+... +...+.+++|+|... ++.+|++++.|+.|++||+.++ +.+..+. |...|++++|+|
T Consensus 516 ~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 516 DLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp ETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred eCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC
Confidence 99887766554431 345699999988110 2349999999999999999987 5555554 678999999999
Q ss_pred CcEEEEeCCCCCEEEEEccCC
Q 013881 410 GGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 410 dg~l~s~~~dg~i~iwd~~~g 430 (434)
++.|++++.||.|++|++..+
T Consensus 595 ~~~l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 595 PSTLVSSGADACIKRWNVVLE 615 (615)
T ss_dssp TTEEEEEETTSCEEEEEEC--
T ss_pred CCCeEEecCCceEEEEeeecC
Confidence 998999999999999999764
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.8e-36 Score=281.13 Aligned_cols=283 Identities=15% Similarity=0.160 Sum_probs=236.1
Q ss_pred ccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCce--EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~--~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
.|..+|.|++|+++ .+++++.|+.|++||+.++ + .+..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 47889999999765 3667889999999999987 5 88999999999999999999999999999999999999887
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~ 260 (434)
+....+ .+..|...|.+++|+++ +|++++.|+.|++||+....
T Consensus 85 ~~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 85 TWKPTL-----------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp EEEEEE-----------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred eeeeeE-----------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 654332 24678899999999988 99999999999999998874
Q ss_pred CccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeC------------------CCCeEEEEEccccccEEEEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNL------------------ETLQCIQTLTEHTSVVMSLL 320 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~------------------~~~~~~~~~~~~~~~v~~l~ 320 (434)
...........|...|.++.|+ +++|++++.|+.|++||+ ..++++..+..|...|.++.
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 3212233446789999999996 568999999999999995 46788999999999999999
Q ss_pred Ec--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC--Cc-----
Q 013881 321 CW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS--FA----- 391 (434)
Q Consensus 321 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~----- 391 (434)
|+ +++|++++.|+.|++||+++.+.+..+..+. ..+.+++++++.. +|+++ .|+.|++|++.+ ++
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~---~l~~~-~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESS---LVAAG-HDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTE---EEEEE-TTSSCEEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCC---EEEEE-eCCeEEEEEccCcCceEEEee
Confidence 97 6799999999999999999888777766554 4688899987654 67666 999999999987 32
Q ss_pred ---------------------------cc------ccc--cccCcEEEEEec-CC----cEEEEeCCCCCEEEEEccCCc
Q 013881 392 ---------------------------ER------GKI--FAKQEIRAIQLG-PG----GLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 392 ---------------------------~~------~~~--~~~~~v~~~~~s-pd----g~l~s~~~dg~i~iwd~~~g~ 431 (434)
.. ..+ .|...|++++|. ++ .+|++++.||.|++|++.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00 222 468899999966 66 399999999999999998754
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=279.08 Aligned_cols=240 Identities=19% Similarity=0.242 Sum_probs=197.5
Q ss_pred cccccceEEEEEeCC-cEEEecCCCeEEEEeCCCCce---EEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 106 AVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~---~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
..++.+|.+++|+++ .+++|+.||.|+|||+.++.. ....+.+|.+.|++|+|+|++++|++|+.|++|++||+.+
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 345678999999765 578899999999999997721 2234568999999999999999999999999999999999
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCC
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~ 258 (434)
++++.. +.+|...|.+++|+++ +|++++.|++|++||+++
T Consensus 159 ~~~~~~-------------------------------------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 159 QVVLSS-------------------------------------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp TEEEEE-------------------------------------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred CcEEEE-------------------------------------EcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 887754 5689999999999886 789999999999999998
Q ss_pred CCCccccceee--cCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--C-CEEEEEe
Q 013881 259 TTNCFEPAASL--KGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLLSCS 330 (434)
Q Consensus 259 ~~~~~~~~~~~--~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~s~s 330 (434)
. +....+ ..|...+.++++++ ++|++|+.||+|++||+++++++..+.+|...|.+++|+ + ++|++++
T Consensus 202 ~----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 202 P----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp S----SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred c----ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 7 344443 34566788999863 579999999999999999999999999999999999998 3 5799999
Q ss_pred CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
.|++|+|||+++.+. ..+.. +...|.+++|+|+.. .+|++++.|++|++|++++..
T Consensus 278 ~D~~i~vwd~~~~~~-~~~~~--H~~~V~~v~~sp~~~--~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 278 EDCSLAVLDSSLSEL-FRSQA--HRDFVRDATWSPLNH--SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTSCEEEECTTCCEE-EEECC--CSSCEEEEEECSSST--TEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEECCCCcE-EEEcC--CCCCEEEEEEeCCCC--eEEEEEcCCCeEEEEECCCCC
Confidence 999999999987653 33333 345799999987654 478899999999999998754
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-35 Score=286.70 Aligned_cols=279 Identities=24% Similarity=0.413 Sum_probs=242.5
Q ss_pred eEEEEecCccccE-EEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC-CceEEEEeCCCEEEEE-cCCcEEEEEC
Q 013881 141 KLLTQLEGHQKVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNT 217 (434)
Q Consensus 141 ~~~~~l~~h~~~V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~~w~~ 217 (434)
+....+.+|.+.| +++ ++++++|++|+.||+|++||+.+++.+..+..+ ..+.++.+.+.+++++ .++.|++||+
T Consensus 109 ~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEEC
Confidence 4556788999875 554 456899999999999999999999999888754 5677777767776665 5899999999
Q ss_pred CCCceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEE
Q 013881 218 QTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296 (434)
Q Consensus 218 ~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~ 296 (434)
.+++.. .+.+|...|.++.++++.+++|+.||.|++||+.++ +....+.+|...|.++.++++++++++.||.|+
T Consensus 187 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 262 (445)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC----CEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred CcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEE
Confidence 998876 778899999999999999999999999999999987 667788899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
+||+++++++..+..|...|.++.+++.++++++.|+.|++||+++.+.+..+..+.. .+.++.+. + .+++++
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~--~---~~l~~~ 335 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELK--D---NILVSG 335 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEEE--T---TEEEEE
T ss_pred EEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEEe--C---CEEEEE
Confidence 9999999999999999999999999999999999999999999999887776665543 45566542 2 389999
Q ss_pred eCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 377 CNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.||.|++||+.+++.+..+. +...|.+++|+++ +|++|+.||.|++||+.+++.+
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCC-EEEEEeCCCeEEEEECCCCcee
Confidence 999999999999988877765 5778999999643 9999999999999999998754
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-35 Score=277.07 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=216.4
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+....+++|.+.|++++|+|++++|+||+.|++|+|||..+++....
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------------------- 101 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA--------------------------------- 101 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE---------------------------------
Confidence 56788999999999999999999999999999999999988876654
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC--ccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN--CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
+..|...|.+++|+|+ .|++|+.|+.+++|++..... .......+.+|...|.++.|+ +..|++++.|++
T Consensus 102 ----~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~ 177 (354)
T 2pbi_B 102 ----VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177 (354)
T ss_dssp ----EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ----EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence 3456778999999998 999999999999999875421 124456677899999999996 458999999999
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
|++||+++++++..+.+|...|.++.+. +++|++++.|+.|++||+++...+..+..|. ..+.+++|+|+..
T Consensus 178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~-- 253 (354)
T 2pbi_B 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGD-- 253 (354)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSS--
T ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCC--
Confidence 9999999999999999999999999886 4699999999999999999988777665554 4688999987655
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+|++++.|++|++||+.+.+.+..+.. ...+.+++|+|++ +|++|+.|+.|++||+.+++.
T Consensus 254 -~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 254 -AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 899999999999999998876655543 3478999999999 999999999999999988764
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.3e-37 Score=294.35 Aligned_cols=284 Identities=14% Similarity=0.197 Sum_probs=217.9
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~ 179 (434)
...|...|+|++|++. .+++|+.||.|+|||+.++ ...+..+.+|.+.|++|+|+| ++++|+|++.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 4567788999999752 4778999999999999865 245556789999999999998 7899999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
+++....... ...+...+.+++|+++ +|++|+.||.|++||++
T Consensus 195 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 195 KGNILRVFAS-----------------------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp TSCEEEEEEC-----------------------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred cCCceeEEec-----------------------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 8654322111 1234456778899888 99999999999999987
Q ss_pred CCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEE---EccccccEEEEEEc--CCEEEEE
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~~--~~~l~s~ 329 (434)
. +.+..+.+|...|.+++|++ .+|++++.|+.|++||+++.+.... ..+|...|.+++|+ +++|+++
T Consensus 240 ~-----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 240 G-----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp S-----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred c-----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 5 45667889999999999974 3788999999999999988765433 35799999999998 6799999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCC----ccEEEEEeccCCCCCcEEEEE------------eCCCeEEEEeCCCCccc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEE----HGVLALCGMPDSEGKPVLLCS------------CNDNSVRFYDLPSFAER 393 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~~~~ 393 (434)
+.|+.|+|||+.+......+..+... .......+.+... +++++ ..++.|++||..+++.+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN---LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSS---CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCC---EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 99999999999988777666544321 1122223333222 33333 24468999999999888
Q ss_pred cccc--ccCcEEEE-EecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 394 GKIF--AKQEIRAI-QLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 394 ~~~~--~~~~v~~~-~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
..+. |...|.++ +|+|+| +|++|+ |+.|+||++++|+.
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7764 46678777 699999 888876 78999999999875
No 46
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-35 Score=280.29 Aligned_cols=284 Identities=15% Similarity=0.208 Sum_probs=233.5
Q ss_pred EEeCCCCceEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEe---cCCceEEEEe---CCCEEE
Q 013881 133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMIS---EGPWIF 205 (434)
Q Consensus 133 vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~---~~~~l~ 205 (434)
+|+.... ++...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. ....+.++.+ ++.+++
T Consensus 57 ~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSY-KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTC-EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred ccccccc-ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 4455554 8888999999999999999999 999999999999999999998888776 4466777765 335555
Q ss_pred E-EcCCcEEEEECCCCceEEecCC---CCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 206 I-GVTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 206 ~-~~~~~i~~w~~~~~~~~~~~~~---~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
+ +.++.|++||+.+.....+..+ ...|.+++|+++ +|++++.|+.|++||++ . +.+..+.+|...|.++
T Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~----~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G----HEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S----CEEEEEECSSSCEEEE
T ss_pred EEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C----CEEEEeccCCCcEEEE
Confidence 5 4589999999998666555444 488999999998 99999999999999994 3 5677888999999999
Q ss_pred EECC--C-EEEEecCCCcEEEEeCCC----CeEEEEEccccccEEEEEEcC---CEEEEEeCCCcEEEEEcCCCCceEEE
Q 013881 280 VVGA--N-KLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVT 349 (434)
Q Consensus 280 ~~~~--~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~ 349 (434)
+|++ . +|++++.|+.|++||+++ ++++..+ .|...|.+++|++ ++|++++.|+.|++||+++......+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 9974 3 899999999999999998 6677777 7999999999974 79999999999999999988776666
Q ss_pred eeecC---------------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc---ccCcEEEEEecCCc
Q 013881 350 YTHNE---------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF---AKQEIRAIQLGPGG 411 (434)
Q Consensus 350 ~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~spdg 411 (434)
..+.. ...+..+.+++++. + +++.|+.|++||+.+++.+..+. +...+..++|+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~---~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ---L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT---T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCcc---c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 54431 12344455555443 3 77899999999999999888776 35667788999999
Q ss_pred -EEEEeCCCCCEEEEEccC
Q 013881 412 -LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd~~~ 429 (434)
+|++++ ||.|+|||+++
T Consensus 365 ~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEEE-TTEEEEEECC-
T ss_pred cEEEEec-CCcEEEEecCC
Confidence 999996 99999999975
No 47
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-36 Score=287.79 Aligned_cols=260 Identities=20% Similarity=0.270 Sum_probs=220.0
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcC
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT 209 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (434)
.+..|+..+. .+.++|.+|.+.|++++|+|++++|+||+.|++|+|||+.+++.+..
T Consensus 47 ~~~~~~~~~~-~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~---------------------- 103 (380)
T 3iz6_a 47 TAVSFNPTDL-VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA---------------------- 103 (380)
T ss_dssp GCCCCCCCCC-EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE----------------------
T ss_pred ccccccccee-EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE----------------------
Confidence 4456777765 88999999999999999999999999999999999999999876654
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC---ccccceeecCccceEEEEEECC-
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVGA- 283 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~~~- 283 (434)
+..|...|.+++|+|+ +|++|+.|+.|++|++..... .......+.+|...|.++.+.+
T Consensus 104 ---------------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~ 168 (380)
T 3iz6_a 104 ---------------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168 (380)
T ss_dssp ---------------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS
T ss_pred ---------------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC
Confidence 4568888999999998 999999999999999975421 1234566789999999988864
Q ss_pred --CEEEEecCCCcEEEEeCCCCeEEEEE-----ccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCC-CceEEEeee
Q 013881 284 --NKLYSGSMDNSIRVWNLETLQCIQTL-----TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDS-GNLEVTYTH 352 (434)
Q Consensus 284 --~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~ 352 (434)
..|++++.|++|++||+++++.+..+ .+|...|.++.+. +++|++|+.|+.|++||++.. ..+..+..|
T Consensus 169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h 248 (380)
T 3iz6_a 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH 248 (380)
T ss_dssp SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence 47999999999999999999999887 6789999999995 679999999999999999844 445555554
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--------cCcEEEEEecCCc-EEEEeCCCCCEE
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--------KQEIRAIQLGPGG-LFFTGDGTGQVR 423 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~~spdg-~l~s~~~dg~i~ 423 (434)
. ..+.+++|+|++. +|++++.|++|++||+.+++.+..+.. ...|++++|+|+| +|++|+.||.|+
T Consensus 249 ~--~~v~~v~~~p~~~---~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 249 E--GDINSVKFFPDGQ---RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp S--SCCCEEEECTTSS---EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred C--CCeEEEEEecCCC---eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 4 4588899987655 899999999999999999887665532 2248999999999 999999999999
Q ss_pred EEEccCCcc
Q 013881 424 VWQWCNGPV 432 (434)
Q Consensus 424 iwd~~~g~~ 432 (434)
+||+.+++.
T Consensus 324 vwd~~~~~~ 332 (380)
T 3iz6_a 324 VWDTLLAEM 332 (380)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCce
Confidence 999987764
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=306.93 Aligned_cols=319 Identities=10% Similarity=0.099 Sum_probs=241.5
Q ss_pred ccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
...|...|+|++|+++. +++|+.|+.|++|+..+. +.+..+ .|...|++|+|+| +++|++++.|++|+|||+.++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34678899999998764 777899999999999876 665555 4889999999999 889999999999999999999
Q ss_pred ceEEEEecCCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceE------------EecCCCCcEEEEEEeCC---EEEE
Q 013881 183 QCAGVINLGGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL------------SLSGPVGQVYAMAVGND---LLFA 244 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~------------~~~~~~~~v~~l~~~~~---~l~~ 244 (434)
+++..+.....+.++.+ ++.+++++ .++.|++||++++... .+.+|...|.+++|+|+ .|++
T Consensus 90 ~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 90 KVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp SEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 99999987778887764 66777775 5899999999988753 23568899999999996 8999
Q ss_pred EeCCCcEEEEEcCCCCCccccceeecCc------------------cceEEEEEEC--CCEEEEecCCCcEEEEeCCCCe
Q 013881 245 GTQDGAILAWKFNVTTNCFEPAASLKGH------------------SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 245 g~~dg~i~vwd~~~~~~~~~~~~~~~~h------------------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 304 (434)
|+.||.| +||++.. +....+..| ...|.+++|+ +++|++++.||+|++||+++++
T Consensus 170 g~~dg~v-lWd~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 170 SYEYVTL-TYSLVEN----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp ECSSCEE-EEETTTT----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EeCCCcE-EEECCCC----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999 9999886 444444443 5789999996 5699999999999999999998
Q ss_pred EEEE--Ec---c-------------ccccEEEEEEc----C---CEEEEEeCC-----CcEEEEEcCC------------
Q 013881 305 CIQT--LT---E-------------HTSVVMSLLCW----D---QFLLSCSLD-----KTIKVWFATD------------ 342 (434)
Q Consensus 305 ~~~~--~~---~-------------~~~~v~~l~~~----~---~~l~s~s~d-----g~i~vwd~~~------------ 342 (434)
++.. +. . |...|.+++|. + .+|++++.| ..+.+|++..
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 8764 21 1 34578899884 2 356666555 2677776310
Q ss_pred -----------------CCc-------------------------------eEEEeee----------------cCCccE
Q 013881 343 -----------------SGN-------------------------------LEVTYTH----------------NEEHGV 358 (434)
Q Consensus 343 -----------------~~~-------------------------------~~~~~~~----------------~~~~~~ 358 (434)
... +..+... .+...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 000 0000000 000123
Q ss_pred EEEEecc-------------------------------CCCCCcEEEEEeCCCeEEEEeCCCCccccc--c---------
Q 013881 359 LALCGMP-------------------------------DSEGKPVLLCSCNDNSVRFYDLPSFAERGK--I--------- 396 (434)
Q Consensus 359 ~~~~~~~-------------------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~--------- 396 (434)
.++++.+ ..+++++|++|+.|++|++||+.++..... +
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred eEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC
Confidence 3333311 123456999999999999999998753211 1
Q ss_pred -cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 397 -FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 397 -~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.|...|.+++|+||+ +||+|+.||+|+||++.+++
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 456789999999999 99999999999999998774
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-35 Score=268.75 Aligned_cols=245 Identities=14% Similarity=0.184 Sum_probs=201.8
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC--ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+..+.+|.+.|++++|+|++++||+|+.|++|+|||+... +.+.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~---------------------------------- 47 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID---------------------------------- 47 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE----------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE----------------------------------
Confidence 4567899999999999999999999999999999998753 2222
Q ss_pred ceEEecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC----CEEEEecCC
Q 013881 221 TDLSLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMD 292 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~d 292 (434)
.+.+|...|.+++|++ .+|++|+.|++|++||+..+.. .....+.+|...|.+++|++ .+|++++.|
T Consensus 48 ---~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 48 ---TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp ---EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ---EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 4678999999999974 3999999999999999986531 34566788999999999964 589999999
Q ss_pred CcEEEEeCCCCe--EEEEEccccccEEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCCce----EEEee
Q 013881 293 NSIRVWNLETLQ--CIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNL----EVTYT 351 (434)
Q Consensus 293 g~i~vwd~~~~~--~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~~~~~----~~~~~ 351 (434)
+.|++||++++. ....+.+|...|.+++|++ ++|++++.|++|++||+++.... ..+..
T Consensus 123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence 999999998763 2466788999999999984 48999999999999999876532 22223
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc------cccccccCcEEEEEecCCc-EEEEeCCCCCEEE
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRV 424 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~i 424 (434)
+...+.+++|+|+...+.+|++++.|++|+|||+.+... +....+...|.+++|+|++ +|++++.||.|+|
T Consensus 203 --H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 203 --HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp --CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred --CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 345699999998753345899999999999999987431 1112357789999999999 9999999999999
Q ss_pred EEcc
Q 013881 425 WQWC 428 (434)
Q Consensus 425 wd~~ 428 (434)
|+..
T Consensus 281 w~~~ 284 (297)
T 2pm7_B 281 WKEN 284 (297)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9987
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=287.02 Aligned_cols=302 Identities=14% Similarity=0.164 Sum_probs=241.3
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEe--------------cC
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVIN--------------LG 191 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------------~~ 191 (434)
.+..+++|+.+.+ +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+. +.
T Consensus 21 ~~~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 21 AESTRRVLGLELN-KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHHTEEEC-TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred ccCcceeeccccC-cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3456788888876 67788899999999999999 99999999999999999999987666554 55
Q ss_pred CceEEEEe---CCCEEEE-EcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEcCCCCCc
Q 013881 192 GEVGCMIS---EGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 192 ~~~~~~~~---~~~~l~~-~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
..+.++.+ ++.++++ +.++.|++||+.+++......+...+.++.+.+. ++++++.|+.|++||+...
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--- 176 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--- 176 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---
Confidence 66777765 3445554 5589999999999998877778899999999874 8999999999999999887
Q ss_pred cccceeecCccceEEEEEECCC---EEEEecCCCcEEEEeCCCCe-EEEEE---------------ccccccEEEEEEc-
Q 013881 263 FEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQ-CIQTL---------------TEHTSVVMSLLCW- 322 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~-~~~~~---------------~~~~~~v~~l~~~- 322 (434)
+....+..|...|.+++++++ .|++++.||.|++||+++++ ++..+ ..|...|.+++|+
T Consensus 177 -~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 177 -SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp -CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred -ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 667788899999999999743 68999999999999998765 44444 5788999999998
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccC
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQ 400 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 400 (434)
+++|++++.|+.|++||+.+..................+.+.........+++++.|+.|++||+.+++.+..+. |..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 679999999999999999987665443332211111111111112222357777889999999999999888876 678
Q ss_pred cEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 401 EIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 401 ~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.|++++|+|++ +|++++.||.|++||+.+++.+
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 99999999999 9999999999999999988754
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-35 Score=278.68 Aligned_cols=279 Identities=18% Similarity=0.181 Sum_probs=213.7
Q ss_pred cccccceEEEEEeCCc--EEEecC------CCeEEEEeCCCCc---eEEEEecCccccEEEEEccCCCCEEEEEECCCcE
Q 013881 106 AVIKTDILCRNWVQGN--CMYGEK------CKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~--~~~g~~------d~~i~vwd~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v 174 (434)
..|+..|.|++|+++. +++|+. |+.|++|+..++. .+.....+|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 4688999999998775 555665 7789999988762 12334457899999999999975 5568899999
Q ss_pred EEEECCCCceEEEE-----ecCCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC---EE
Q 013881 175 RVWDCASGQCAGVI-----NLGGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LL 242 (434)
Q Consensus 175 ~iwd~~~~~~~~~~-----~~~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~---~l 242 (434)
+|||+.+++..... .+...+.++.+ ++.+|+++ .++.|++||+++++.+ .+.+|...|.+++|+++ ++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 99999988654322 23456777654 66777765 5889999999998876 77889999999999876 78
Q ss_pred EEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEE
Q 013881 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319 (434)
Q Consensus 243 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 319 (434)
++++.|+.|++||+++... .....+..|...+.+++|++ .+|++|+.|+.|++||++++++++.+..|...|.++
T Consensus 198 ~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp EEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 9999999999999988742 22233456778899999963 589999999999999999999999999999999999
Q ss_pred EEc--C-CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 320 LCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 320 ~~~--~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
+|+ + ++|++++.|++|+|||+++.+.+. ... +...|.+++|+|.. +.+|++++.|++|++|++++...
T Consensus 276 ~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~--H~~~V~~vafsP~d--~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 276 AYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLS--HRDFVTGVAWSPLD--HSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECC--CSSCEEEEEECSSS--TTEEEEEETTSCEEEEECC----
T ss_pred EEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECC--CCCCEEEEEEeCCC--CCEEEEEcCCCeEEEEECCCCCc
Confidence 997 3 579999999999999998775443 333 44579999998732 23899999999999999976443
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.9e-35 Score=280.09 Aligned_cols=307 Identities=11% Similarity=0.082 Sum_probs=243.5
Q ss_pred eEEEEEeC--CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 112 ILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 112 i~c~~~~~--~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
+++++|++ ..+++++.|+.|++||+.++ +....+..| ..+....|++++++|++++.|+.|++||+.+++....+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 34566644 46889999999999999886 655666666 455556789999999999999999999999998887764
Q ss_pred -cCCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc
Q 013881 190 -LGGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 190 -~~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
+...+.++.+ ++.+++++ .++.|++||+.+++.. .+.+|...|.+++|+++ +|++++.|+.|++||++++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--- 213 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG--- 213 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC---
Confidence 4566777765 56666665 5889999999987765 77889999999999988 9999999999999999887
Q ss_pred cccceeec---CccceEEEEEE-----------------------CCCEEEEecCCCcEEEEeCCCCeEEEEEc-ccccc
Q 013881 263 FEPAASLK---GHSLAVVSLVV-----------------------GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSV 315 (434)
Q Consensus 263 ~~~~~~~~---~h~~~v~~l~~-----------------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~ 315 (434)
+....+. .|...+.++.+ ++++|++++.||.|++||+++++.+..+. .|...
T Consensus 214 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 214 -TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp -EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred -ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 4555554 34555666655 35689999999999999999998877775 48899
Q ss_pred EEEEEEc--CC-EEEEEeCCCcEEEEEcCCCCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 316 VMSLLCW--DQ-FLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 316 v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
|.+++|+ +. +|++++.||.|++||+++... +..+..+ ....+..+.+. ++ .+|++++.|+.|++|++....
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~-~~---~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYFA-AG---ALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEEE-TT---EEEEEETTTEEEEEEEECCTT
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEeC-CC---CEEEEecCCccEEEEeccCCC
Confidence 9999998 44 999999999999999998765 4444443 33456666543 22 389999999999999998742
Q ss_pred cc----------ccccccCcEEEEEecCCcE----EEEeCCCCCEEEEEccC
Q 013881 392 ER----------GKIFAKQEIRAIQLGPGGL----FFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 392 ~~----------~~~~~~~~v~~~~~spdg~----l~s~~~dg~i~iwd~~~ 429 (434)
.. ....+...|.+++|+|++. |++.+.+|.+.+|++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22 2223577899999999884 88888999999999875
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=271.81 Aligned_cols=253 Identities=22% Similarity=0.272 Sum_probs=209.0
Q ss_pred CceEEEEecCccc-cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEEC
Q 013881 139 GFKLLTQLEGHQK-VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNT 217 (434)
Q Consensus 139 ~~~~~~~l~~h~~-~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~ 217 (434)
..+++.++.+|.+ .|.+++|+|++++||+|+.|++|+|||+.+++.....
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~----------------------------- 54 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS----------------------------- 54 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------
Confidence 4578899999988 9999999999999999999999999998877543221
Q ss_pred CCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCC
Q 013881 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (434)
Q Consensus 218 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 293 (434)
....+|...|.+++|+|+ +|++|+.|+.|++|++..... +....+.+|...|.+++|+ +++|++++.|+
T Consensus 55 -----~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 55 -----VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF--ECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp -----EECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -----eeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--EEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence 124679999999999998 999999999999999986532 4567889999999999996 56999999999
Q ss_pred cEEEEeCCCC---eEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC
Q 013881 294 SIRVWNLETL---QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (434)
Q Consensus 294 ~i~vwd~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (434)
+|++||++++ +++..+..|...|.+++|+ +++|++++.|+.|++||+++...........+...+.+++|+|++.
T Consensus 128 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 9999999875 4567888999999999998 6799999999999999998765332222223345799999988655
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCcc---------------cccc--cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 369 GKPVLLCSCNDNSVRFYDLPSFAE---------------RGKI--FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 369 ~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~--~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
+|++++.|++|+||+...... +..+ .|...|.+++|+|++ .|++++.|+.|++|++..+
T Consensus 208 ---~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 208 ---RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp ---EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred ---EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 999999999999999743221 1111 256789999999999 9999999999999998764
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.2e-35 Score=268.61 Aligned_cols=249 Identities=22% Similarity=0.340 Sum_probs=212.0
Q ss_pred ceEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
+.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++.........
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~------------------------------ 56 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV------------------------------ 56 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE------------------------------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc------------------------------
Confidence 36677899999999999999965 89999999999999998643211100
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
....+.+|...|.+++|+++ +|++|+.|++|++||+.++ +....+.+|...|.++.++ +.+|++++.|++
T Consensus 57 --~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 57 --PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130 (319)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred --cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 01246789999999999998 9999999999999999987 6778899999999999996 468999999999
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEcC--------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWD--------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
|++||++ ++++..+.+|...|.++.+.+ ..|++++.|+.|++||+++......+..|. ..+.+++++|+
T Consensus 131 i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~ 207 (319)
T 3frx_A 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPD 207 (319)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTT
T ss_pred EEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCC
Confidence 9999996 567888999999999999873 379999999999999998876665555554 46889999876
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 367 SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 367 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
+. +|++++.|+.|++||+.+++.+..+.+...|.+++|+|++ +|++++.+ .+++|++..+.
T Consensus 208 g~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 208 GT---LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp SS---EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE
T ss_pred CC---EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe
Confidence 55 9999999999999999999998888888899999999999 77777655 49999987654
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-34 Score=279.90 Aligned_cols=291 Identities=19% Similarity=0.332 Sum_probs=243.5
Q ss_pred EEeCCCCceEEEEecCccccE-EEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec-CCceEEEEe-CCCEEEE-Ec
Q 013881 133 SWTVGDGFKLLTQLEGHQKVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMIS-EGPWIFI-GV 208 (434)
Q Consensus 133 vwd~~~~~~~~~~l~~h~~~V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~-~~ 208 (434)
.|...........+.+|...| +++.+ ++++|++|+.||+|++||+.+++.+..+.. ...+.++.+ ++.++++ +.
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~ 181 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 181 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEET
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeC
Confidence 344333335667889998875 66666 567999999999999999999999998884 456777765 2335554 56
Q ss_pred CCcEEEEECCCCceE-EecCCCCcEEEEEEeC--C--EEEEEeCCCcEEEEEcCCCCCccc-------------------
Q 013881 209 TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFE------------------- 264 (434)
Q Consensus 209 ~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~--~--~l~~g~~dg~i~vwd~~~~~~~~~------------------- 264 (434)
|+.|++||+++++.. .+.+|...|.+++|.+ + ++++|+.|+.|++||+........
T Consensus 182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 899999999998876 6778999999999984 3 899999999999999987642211
Q ss_pred cceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 013881 265 PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD 342 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 342 (434)
....+.+|...+.++..+++++++++.|+.|++||+++++++..+.+|...|.++.++ +++|++++.|+.|++||+++
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 2456788999999999999999999999999999999999999999999999999998 67999999999999999998
Q ss_pred CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCC
Q 013881 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQ 421 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~ 421 (434)
++.+..+..+. ..+.++.+. + .+|++++.||.|++||+.++.......+...+..++|+|++ +|++++ ||.
T Consensus 342 ~~~~~~~~~h~--~~v~~~~~~--~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 342 GELMYTLQGHT--ALVGLLRLS--D---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 413 (464)
T ss_dssp TEEEEEECCCS--SCEEEEEEC--S---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTE
T ss_pred CcEEEEEeCCC--CcEEEEEEc--C---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCe
Confidence 87777766654 457777775 2 38999999999999999998877777778888899999999 888888 899
Q ss_pred EEEEEccCCccc
Q 013881 422 VRVWQWCNGPVA 433 (434)
Q Consensus 422 i~iwd~~~g~~~ 433 (434)
|++||+.+++++
T Consensus 414 i~iwd~~~g~~~ 425 (464)
T 3v7d_B 414 FNIYNLRSGKLV 425 (464)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEE
Confidence 999999999864
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.4e-34 Score=263.82 Aligned_cols=250 Identities=24% Similarity=0.406 Sum_probs=214.4
Q ss_pred CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 139 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
...+...+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------- 60 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT------------------------------- 60 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------------------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-------------------------------
Confidence 3477888999999999999999999999999999999999988876543
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
+.+|...|.+++|+++ +|++++.|+.|++||+.+. +.+..+.+|...|.++.++ +++|++++.|+.
T Consensus 61 ------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 130 (312)
T 4ery_A 61 ------ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130 (312)
T ss_dssp ------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred ------hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 5678999999999998 9999999999999999887 6678889999999999996 569999999999
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcE
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
|++||+++++++..+..|...|.++.++ +++|++++.|+.|++||+++...+..+... ....+..+++.|+.. +
T Consensus 131 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~ 206 (312)
T 4ery_A 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGK---Y 206 (312)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSS---E
T ss_pred EEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCC---E
Confidence 9999999999999999999999999998 679999999999999999988766554432 334677888877655 8
Q ss_pred EEEEeCCCeEEEEeCCCCcccccccc-cCc---EEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 373 LLCSCNDNSVRFYDLPSFAERGKIFA-KQE---IRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~---v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|++++.|+.|++||+.+++.+..+.. ... +......+++ +|++|+.||.|++||+.+++++
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence 99999999999999999887766653 222 2233334567 9999999999999999988754
No 57
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=297.77 Aligned_cols=319 Identities=11% Similarity=0.045 Sum_probs=230.0
Q ss_pred ccccceEEEEEeCCc-EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceE
Q 013881 107 VIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~-~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
.|..+|.+++|+++. +++++.|+.|++||+.++ +++..+. |...|++++|+|++++|++|+.||+|++||+.++++.
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 367799999998877 888999999999999998 7888886 7789999999999999999999999999999988764
Q ss_pred EEEe-------------cCCceEEEEeC---CCEEEEE-cCCcEEEEECCCCceE-EecCC------------------C
Q 013881 186 GVIN-------------LGGEVGCMISE---GPWIFIG-VTNFVKAWNTQTNTDL-SLSGP------------------V 229 (434)
Q Consensus 186 ~~~~-------------~~~~~~~~~~~---~~~l~~~-~~~~i~~w~~~~~~~~-~~~~~------------------~ 229 (434)
.+. +...+.++.+. ...++++ .++.| +||+++++.. .+..| .
T Consensus 134 -~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 134 -SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp -EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred -cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 211 12456666542 2355554 57888 9999998765 44433 4
Q ss_pred CcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccc-cceeec-------------CccceEEEEEEC----C---CEE
Q 013881 230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE-PAASLK-------------GHSLAVVSLVVG----A---NKL 286 (434)
Q Consensus 230 ~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~-------------~h~~~v~~l~~~----~---~~l 286 (434)
..|.+++|+|+ +|++|+.||.|++||++++..... .+.... .|...|.+++|. + ..|
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 78999999998 999999999999999987532100 000001 123345555551 1 123
Q ss_pred EEe----------------------------------------------------------------------------c
Q 013881 287 YSG----------------------------------------------------------------------------S 290 (434)
Q Consensus 287 ~s~----------------------------------------------------------------------------s 290 (434)
++| +
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 333 3
Q ss_pred CCCcEEEEeCCCCeEEEE-------EccccccEEEEEE----------------------------------c--CCEEE
Q 013881 291 MDNSIRVWNLETLQCIQT-------LTEHTSVVMSLLC----------------------------------W--DQFLL 327 (434)
Q Consensus 291 ~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~l~~----------------------------------~--~~~l~ 327 (434)
.|+.|++||+.++..... +..|...|+++++ + +++|+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 445566666555432211 2233344555444 2 56899
Q ss_pred EEeCCCcEEEEEcCCCCce--EEEee-e------cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc------
Q 013881 328 SCSLDKTIKVWFATDSGNL--EVTYT-H------NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------ 392 (434)
Q Consensus 328 s~s~dg~i~vwd~~~~~~~--~~~~~-~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 392 (434)
+|+.|++|++||+.++... ..+.. . .+...+.+++|+|++. +||+|+.||+|+|||+.+++.
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~---~LAsgs~DgtV~lwd~~~~~~~~~~~~ 528 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL---ELAVSIETGDVVLFKYEVNQFYSVENR 528 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT---EEEEEETTSCEEEEEEEECCC------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC---eEEEEecCcEEEEEEecCccccCcccc
Confidence 9999999999999876421 11111 0 3345799999998766 999999999999999986531
Q ss_pred ---------------------------------------ccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 393 ---------------------------------------RGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 393 ---------------------------------------~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+..+. |.+.|++++|+|||+||+|+.|++|+|||+.++++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeE
Confidence 22333 68899999999999999999999999999987654
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-34 Score=315.04 Aligned_cols=322 Identities=22% Similarity=0.327 Sum_probs=267.0
Q ss_pred ccccccceEEEEEeCC----cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 105 RAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~----~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
...|..+|.|+.|+++ .+++|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||+|++||+.
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 4568889999999763 3677899999999999998 8899999999999999999999999999999999999998
Q ss_pred CCceEEEEecC--------------------------------------------------------CceEEE--EeCCC
Q 013881 181 SGQCAGVINLG--------------------------------------------------------GEVGCM--ISEGP 202 (434)
Q Consensus 181 ~~~~~~~~~~~--------------------------------------------------------~~~~~~--~~~~~ 202 (434)
+++....+... ..+.++ .+++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 853 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC
Confidence 88766554321 111222 23456
Q ss_pred EEEEE-cCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCC------------------
Q 013881 203 WIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT------------------ 260 (434)
Q Consensus 203 ~l~~~-~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~------------------ 260 (434)
+++++ .++.|++|++.++... .+.+|...|.+++|+++ .|++++.|+.|++|++....
T Consensus 854 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1249)
T 3sfz_A 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933 (1249)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT
T ss_pred EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCC
Confidence 66655 4789999999888766 67889999999999988 89999999999999964210
Q ss_pred ---------------------------------------------------------CccccceeecCccceEEEEEEC-
Q 013881 261 ---------------------------------------------------------NCFEPAASLKGHSLAVVSLVVG- 282 (434)
Q Consensus 261 ---------------------------------------------------------~~~~~~~~~~~h~~~v~~l~~~- 282 (434)
...+....+.+|...|.+++|+
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~ 1013 (1249)
T 3sfz_A 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013 (1249)
T ss_dssp EEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS
T ss_pred CcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC
Confidence 0012234456788899999986
Q ss_pred -CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEE
Q 013881 283 -ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360 (434)
Q Consensus 283 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 360 (434)
+++|++++.||.|++||+.+++.+. +..|...|.++.+. +..+++++.|+.|++||+.++.....+..+.. .+.+
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~ 1090 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG--TVLS 1090 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS--CCCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC--cEEE
Confidence 5689999999999999999988764 55899999999998 67899999999999999999888777766554 4778
Q ss_pred EEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
++++|++. ++++++.|++|++||+.+++.+..+. |...|++++|+|++ +|++++.||.|++||+.+++.+
T Consensus 1091 ~~~s~d~~---~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1091 CAISSDAT---KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp EEECSSSS---SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred EEECCCCC---EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 88887655 89999999999999999998887766 57889999999999 9999999999999999998754
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-35 Score=280.75 Aligned_cols=284 Identities=13% Similarity=0.220 Sum_probs=229.3
Q ss_pred EEeCCCCceEEEEe-cCccccEEEEEccC-CCCEEEEEECCCcEEEEECCC---C---ceEEEEecCCceEEEEe--CCC
Q 013881 133 SWTVGDGFKLLTQL-EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS---G---QCAGVINLGGEVGCMIS--EGP 202 (434)
Q Consensus 133 vwd~~~~~~~~~~l-~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~---~---~~~~~~~~~~~~~~~~~--~~~ 202 (434)
.|+.. + +++..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+ + +....+.+...+.++.+ ++.
T Consensus 47 ~w~~~-g-~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNLR-G-KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGCC-C-CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred ccccc-c-eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 38744 4 788888 89999999999999 999999999999999999877 3 24555567778888865 456
Q ss_pred EEEE-EcCCcEEEEECC---CCceEE-----------ecC--CCCcEEEEEEe--CC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 203 WIFI-GVTNFVKAWNTQ---TNTDLS-----------LSG--PVGQVYAMAVG--ND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 203 ~l~~-~~~~~i~~w~~~---~~~~~~-----------~~~--~~~~v~~l~~~--~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
++++ +.|+.|++||++ .++... +.. +...+.++.+. ++ +|++++.|+.|++||+++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-- 202 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-- 202 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 6665 558999999995 333321 112 55667777743 44 9999999999999999887
Q ss_pred ccccceeecC--ccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEc-cccccEEEEEEcC------CEEEEEe
Q 013881 262 CFEPAASLKG--HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD------QFLLSCS 330 (434)
Q Consensus 262 ~~~~~~~~~~--h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~~------~~l~s~s 330 (434)
+.+..+.. |...|.+++++ +++|++++.||.|++||+++++++..+. .|...|.++.+.+ .+|++++
T Consensus 203 --~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 203 --ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp --CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred --eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 66777777 89999999996 5689999999999999999999999987 7888999997763 3899999
Q ss_pred CCCcEEEEEcCCCCceEEEeeec------------------------CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 331 LDKTIKVWFATDSGNLEVTYTHN------------------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 331 ~dg~i~vwd~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
.|+.|++||+++...+..+..+. +...+.++++. +. .+|++++.|+.|++||
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---KILLTDEATSSIVMFS 356 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---EEEEEEGGGTEEEEEE
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---eEEEecCCCCeEEEEE
Confidence 99999999999887777666442 23346667776 22 4899999999999999
Q ss_pred CCCCccccccc--------------------------------------ccCcEEEEEecCC--c-EEEEeCCCCCEEEE
Q 013881 387 LPSFAERGKIF--------------------------------------AKQEIRAIQLGPG--G-LFFTGDGTGQVRVW 425 (434)
Q Consensus 387 ~~~~~~~~~~~--------------------------------------~~~~v~~~~~spd--g-~l~s~~~dg~i~iw 425 (434)
+.+++....+. |...|++++|+++ + +|++|+.||.|+||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 99987665543 6788999999998 6 99999999999999
Q ss_pred E
Q 013881 426 Q 426 (434)
Q Consensus 426 d 426 (434)
+
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 5
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=272.48 Aligned_cols=285 Identities=14% Similarity=0.180 Sum_probs=223.1
Q ss_pred cccccceEEEEEeCCc--EE-EecC---CCeEEEEeCCCCceEEEEecCccccEEEEEccCC---CCEEEEEECCCcEEE
Q 013881 106 AVIKTDILCRNWVQGN--CM-YGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRV 176 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~--~~-~g~~---d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l~s~s~dg~v~i 176 (434)
..|..+|.+++|+++. ++ +|+. |+.|++||+.++........+|...|++++|+|+ +++|++++.||.|++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 4588899999998754 33 3554 9999999999873333334479999999999998 699999999999999
Q ss_pred EECCCCc-eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEe------CC--EEEEEeC
Q 013881 177 WDCASGQ-CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG------ND--LLFAGTQ 247 (434)
Q Consensus 177 wd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~------~~--~l~~g~~ 247 (434)
||+.+++ .+. .+.+|...|.++.|. ++ .|++++.
T Consensus 95 wd~~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~ 137 (357)
T 3i2n_A 95 WNLEAPEMPVY-------------------------------------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR 137 (357)
T ss_dssp ECTTSCSSCSE-------------------------------------EECCCSSCEEEEEEESGGGCC-CCCEEEEEET
T ss_pred EeCCCCCccEE-------------------------------------EEEecccceEEEeeccccccCCCccEEEEEeC
Confidence 9999876 433 356789999999664 44 9999999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccc----eEEEEEE------CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEE
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSL----AVVSLVV------GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~----~v~~l~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 317 (434)
|+.|++||+.... .+...+..|.. .+.++.+ ++++|++++.|+.|++||+++++.... ..|...|.
T Consensus 138 d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~ 213 (357)
T 3i2n_A 138 DGTVKVWDPRQKD---DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVC 213 (357)
T ss_dssp TSCEEEECTTSCS---SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEE
T ss_pred CCeEEEEeCCCCC---CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceE
Confidence 9999999998874 24555544443 7888883 567999999999999999999987544 57889999
Q ss_pred EEEEc-----CCEEEEEeCCCcEEEEEcCCCCceEEEe---eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 318 SLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTY---THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 318 ~l~~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
++.|+ +++|++++.|+.|++||+++......+. ...+...+.+++++|+.. .+|++++.||.|++||+.+
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--ELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--EEEEEEETTSEEEEEEEEC
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--cEEEEEeCCCcEEEeecCC
Confidence 99997 4799999999999999998765544333 113345788999987543 3799999999999999986
Q ss_pred Cccc-------------------ccc-cccCcEEEEEecCCc-EEE-EeCCCCCEEEEEccCCccc
Q 013881 390 FAER-------------------GKI-FAKQEIRAIQLGPGG-LFF-TGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 390 ~~~~-------------------~~~-~~~~~v~~~~~spdg-~l~-s~~~dg~i~iwd~~~g~~~ 433 (434)
.... ..+ .|...|++++|+|++ +|+ +++.||.|+|||+.+.+++
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC----
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcccC
Confidence 5322 222 257889999999999 777 8999999999999987654
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-33 Score=291.89 Aligned_cols=316 Identities=16% Similarity=0.201 Sum_probs=256.5
Q ss_pred cccccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
....|.+.|.|++|+++. +++++.||.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 346788999999998764 777889999999999998 89999999999999999999999999999999999999999
Q ss_pred CceEEEEecC-CceEEEEe--CCCEEEEE-cCCcEEEEECCCCce--EEecCCCCcEEEEEEeC-C--EEEEEeCCCcEE
Q 013881 182 GQCAGVINLG-GEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTD--LSLSGPVGQVYAMAVGN-D--LLFAGTQDGAIL 252 (434)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~--~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~ 252 (434)
++.+..+..+ ..+.++.+ ++.+++++ .++.|++|++.++.. ..+.+|...|.+++|+| + .|++++.||.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9999888744 55666654 66666665 578999999988733 36788999999999998 4 899999999999
Q ss_pred EEEcCCCCCccccceeecCc-cceEEEEEEC----CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCE
Q 013881 253 AWKFNVTTNCFEPAASLKGH-SLAVVSLVVG----ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQF 325 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~ 325 (434)
+||+... .....+..+ ...+.++.++ +.+|++++.||.|++||+++++.+..+..|...|.+++|+ +++
T Consensus 167 vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 167 VWSLGQS----TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (814)
T ss_dssp EEETTCS----SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred EEECCCC----cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 9999876 344444444 4778888884 5689999999999999999999999999999999999998 679
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc---------
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--------- 396 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------- 396 (434)
|++++.||.|++||+.+......+..+. ..+.+++++|++. .++++.+.++.+.+|++........+
T Consensus 243 l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318 (814)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence 9999999999999999887766665544 4688888887654 23344555778888887643211111
Q ss_pred -----------------------------------cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 397 -----------------------------------FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 397 -----------------------------------~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.+...+.+++|+|+| +|++++ |+.+.+|++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 012346788999999 777777 88899998754
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-34 Score=264.09 Aligned_cols=251 Identities=20% Similarity=0.295 Sum_probs=198.6
Q ss_pred ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
.+++..+++|.+.|.+++|+|+ +|++|+.|++|++||+..+.....
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~-------------------------------- 49 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLI-------------------------------- 49 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEE--------------------------------
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEE--------------------------------
Confidence 3788899999999999999987 999999999999999987532110
Q ss_pred CceEEe-cC-CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC---ccccceeecCccceEEEEEEC--CCEEEEec
Q 013881 220 NTDLSL-SG-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVG--ANKLYSGS 290 (434)
Q Consensus 220 ~~~~~~-~~-~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 290 (434)
..+ .. |...|.+++|+|+ +|++|+.|++|++||+..... ..+....+.+|...|.+++|+ +++|++++
T Consensus 50 ---~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 50 ---DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp ---EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred ---EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 012 33 8999999999998 999999999999999864321 124567788999999999996 56999999
Q ss_pred CCCcEEEEeCCC----CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC--CceEEEeeecCCccEEEEE
Q 013881 291 MDNSIRVWNLET----LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS--GNLEVTYTHNEEHGVLALC 362 (434)
Q Consensus 291 ~dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~ 362 (434)
.|++|++||++. .+++..+.+|...|.+++|+ +++|++++.|++|++||+.+. ..+..+..|. ..+.++.
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~--~~v~~~~ 204 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE--GTVWSSD 204 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEE
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC--CcEEEEE
Confidence 999999999943 36788899999999999998 679999999999999998765 2333444333 5688999
Q ss_pred eccCCCCCcEEEEEeCCCeEEEEeCCCCc--------cccccc--ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCC
Q 013881 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSFA--------ERGKIF--AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g 430 (434)
|.|+... .+|++++.|++|++||+.+.. ....+. |...|.+++|+++++|++++.||.|+||+..++
T Consensus 205 ~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 205 FDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred ecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 9886432 379999999999999997642 222222 678899999998779999999999999999876
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-34 Score=272.74 Aligned_cols=291 Identities=16% Similarity=0.169 Sum_probs=233.0
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEEC----CCCc------eEEEEec--------
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDC----ASGQ------CAGVINL-------- 190 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~----~~~~------~~~~~~~-------- 190 (434)
.+.+|+.... ........|.+.|++++|+|+++ +|++++.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 26 IDSSDDLDGF-VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp --------CC-CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred ccccccchhh-hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 4567888765 33333445779999999999999 9999999999999999 8888 4555554
Q ss_pred ---CCceEEEEe--CCCEEEEE-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc
Q 013881 191 ---GGEVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 191 ---~~~~~~~~~--~~~~l~~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
...+.++.+ ++.+++++ .++.|++|+........+..|...|.+++|+++ +|++++.|+.|++||+...
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 181 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--- 181 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT---
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC---
Confidence 336666654 56677665 588999999665556688899999999999988 8999999999999999877
Q ss_pred cccceeecCccce---------------EEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CC
Q 013881 263 FEPAASLKGHSLA---------------VVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ 324 (434)
Q Consensus 263 ~~~~~~~~~h~~~---------------v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~ 324 (434)
+....+..+... +.++.+. +..+++++.|+.|++||+++++.+..+..|...|.+++++ ++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 182 -TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp -EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred -cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 556666666655 7777775 4589999999999999999999999999999999999998 67
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEE
Q 013881 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIR 403 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 403 (434)
+|++++.|+.|++||+++......+..+. ..+.++++.++. ++++++.|+.|++||+.+++.+..+. +...|.
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC----EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 99999999999999999887777665544 468889888754 79999999999999999988877765 478999
Q ss_pred EEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 404 AIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 404 ~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
+++|+|++ +|++++.||.|++||+.+++
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999 99999999999999998765
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-35 Score=278.52 Aligned_cols=279 Identities=12% Similarity=0.104 Sum_probs=214.8
Q ss_pred ccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
.+..+|+|++|+++. +++|+.|+.|++||+.++. +++..+.+|...|++++|+|++++|++++.|++|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 355789999997653 6667799999999999764 6788899999999999999999999999999999999998876
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
... ....+..|...|.+++|+++ +|++++.|+.|++||++....
T Consensus 89 ~~~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 89 TWK----------------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp CCC----------------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred cee----------------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 110 11236679999999999988 899999999999999987631
Q ss_pred ccccceeecC-ccceEEEEEEC--CCEEEEecCCCcEEEEeCC------------------CCeEEEEEccccccEEEEE
Q 013881 262 CFEPAASLKG-HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE------------------TLQCIQTLTEHTSVVMSLL 320 (434)
Q Consensus 262 ~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~l~ 320 (434)
+.....+.. |...|.+++|+ +++|++++.|+.|++||++ .++++..+ .|...|.+++
T Consensus 135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 124566777 99999999997 4589999999999999985 35677777 8999999999
Q ss_pred Ec--CCEEEEEeCCCcEEEEEcCCCCc----eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc--c
Q 013881 321 CW--DQFLLSCSLDKTIKVWFATDSGN----LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA--E 392 (434)
Q Consensus 321 ~~--~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~ 392 (434)
|+ +++|++++.|+.|++||+.+... +..+..+. ..+.+++|+|++. +|++++.++.+ +|+..... .
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~---~l~~~~~~~~~-~~~~~~~~~~~ 286 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESA---IVAAGYNYSPI-LLQGNESGWAH 286 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTE---EEEEESSSSEE-EECCCC---CC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCC---EEEEEcCCcEE-EEEeCCCceEE
Confidence 98 67999999999999999998876 44444443 4588999988754 88888766655 66664211 0
Q ss_pred cc---------------------------------------------------cccccCcEEEEEecCCc-----EEEEe
Q 013881 393 RG---------------------------------------------------KIFAKQEIRAIQLGPGG-----LFFTG 416 (434)
Q Consensus 393 ~~---------------------------------------------------~~~~~~~v~~~~~spdg-----~l~s~ 416 (434)
.. ...|...|+++.+.++. .|+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~ 366 (377)
T 3dwl_C 287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS 366 (377)
T ss_dssp SBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEee
Confidence 00 00167889999976654 59999
Q ss_pred CCCCCEEEEEc
Q 013881 417 DGTGQVRVWQW 427 (434)
Q Consensus 417 ~~dg~i~iwd~ 427 (434)
+.||.|+|||+
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 99999999985
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=288.43 Aligned_cols=297 Identities=10% Similarity=0.030 Sum_probs=213.0
Q ss_pred EEecCCCeEEEEeCCCCce---EEEEecCccccEEEEEccCC------CCEEEEEECCCcEEEEECCCCceE--------
Q 013881 123 MYGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSG------SDKLYSGSKDETVRVWDCASGQCA-------- 185 (434)
Q Consensus 123 ~~g~~d~~i~vwd~~~~~~---~~~~l~~h~~~V~~l~~s~~------~~~l~s~s~dg~v~iwd~~~~~~~-------- 185 (434)
++++.|++|+||++.++.. ....+.+|.+.|.+|+|+|+ +.+||+++.||+|+|||+.+++..
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 3456889999999987621 23456778899999999996 579999999999999999876422
Q ss_pred ---EEEec-CCceEEEEe-CCCEEEE-EcCCcEEEEECCCCce--EEecCCCCcEEEE--EEeCC---EEEEEeCCCcEE
Q 013881 186 ---GVINL-GGEVGCMIS-EGPWIFI-GVTNFVKAWNTQTNTD--LSLSGPVGQVYAM--AVGND---LLFAGTQDGAIL 252 (434)
Q Consensus 186 ---~~~~~-~~~~~~~~~-~~~~l~~-~~~~~i~~w~~~~~~~--~~~~~~~~~v~~l--~~~~~---~l~~g~~dg~i~ 252 (434)
..+.. ...+.++.+ .+..|++ +.|+.|++||++++.. ..+.+|...|.++ .|+++ +|++|+.|++|+
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 23332 355777765 3345555 4589999999987643 3578999999999 56663 899999999999
Q ss_pred EEEcCCCCCccccceeecCccc--eEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEE
Q 013881 253 AWKFNVTTNCFEPAASLKGHSL--AVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (434)
+||++.. +....+.+|.. .|.+++|++ ..+++++.|++|++||++++.++..+.+|...|++++|+ +++|
T Consensus 337 lWD~~~~----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 337 IFNPKDI----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp EECGGGH----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred EEECCCC----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence 9999876 45555666653 467777864 589999999999999999999989999999999999998 6799
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEee---ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC-CCccccccc-ccCc
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP-SFAERGKIF-AKQE 401 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~ 401 (434)
++|+.|++|++||+... .+..... ......+..++++|++. .+ .... .+.+|+.. ++..+..+. |...
T Consensus 413 ~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~---~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 413 LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDD---KY-RIDS--SYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSC---EE-EECC--CCCCCC-------------CCCS
T ss_pred EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCC---eE-EccC--CceecccccCCcceeeecCCCce
Confidence 99999999999998643 2211110 01112356777776554 33 2222 23344332 344444443 6789
Q ss_pred EEEEEecCC---c-EEEEeCCCCCEEEEEccCC
Q 013881 402 IRAIQLGPG---G-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 402 v~~~~~spd---g-~l~s~~~dg~i~iwd~~~g 430 (434)
|.+++|+|+ + .+++|+.||.|+||++.-+
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999 4 8999999999999998754
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=269.32 Aligned_cols=317 Identities=15% Similarity=0.171 Sum_probs=222.8
Q ss_pred ccccccceEEEEEeC-C--cEEEecCCCeEEEEeCCCCceEEEEe-------------cCccccEEEEEccC-CCCEEEE
Q 013881 105 RAVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGDGFKLLTQL-------------EGHQKVVSGITLPS-GSDKLYS 167 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~-~--~~~~g~~d~~i~vwd~~~~~~~~~~l-------------~~h~~~V~~l~~s~-~~~~l~s 167 (434)
...|..+|+|++|++ + .+++|+.|+.|++||+.++ +....+ .+|...|++++|+| ++.+|++
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 445889999999976 3 4778889999999999976 332222 36999999999999 7889999
Q ss_pred EECCCcEEEEECCCCceEEEEecCCceEEEEe-----CCCEEEE-EcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC
Q 013881 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240 (434)
Q Consensus 168 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~ 240 (434)
++.|+.|++||+.+++.+..+.....+.++.. ++.++++ +.++.|++||+.+++.. .+..|...|.+++|+|+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred EeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 99999999999999999999998887777654 2335555 55889999999988765 77789999999999988
Q ss_pred ---EEEEEeCCCcEEEEEcCCCCCcc------------ccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC
Q 013881 241 ---LLFAGTQDGAILAWKFNVTTNCF------------EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 241 ---~l~~g~~dg~i~vwd~~~~~~~~------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 303 (434)
+|++++.||.|++||++...... ........|...|.+++++ +++|++++.||.|++||++++
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 69999999999999998764211 1122236788999999996 568999999999999999998
Q ss_pred eEEEEEcccc------ccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE
Q 013881 304 QCIQTLTEHT------SVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (434)
Q Consensus 304 ~~~~~~~~~~------~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (434)
+....+..+. .....+... ...+++++.|+.|++||+.+...+..+..+. ..+.+++|+|+.. +|+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~---~l~s~ 352 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY--KTVDCCVFQSNFQ---ELYSG 352 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS--SCEEEEEEETTTT---EEEEE
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC--CeEEEEEEcCCCC---EEEEE
Confidence 7765543321 111222222 5678888899999999999988877776555 4588999987765 99999
Q ss_pred eCCCeEEEEeCCCCcccccccccCcEEEEEecCCc--EEEEeCCCCCEEEEEccC
Q 013881 377 CNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~ 429 (434)
+.||.|++||+.+++.+.......... .+.+.. .+.+.+.++.+++|+...
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETTTKS--QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ETTSCEEEEEECC------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceEecc--ccccccceeecccCccCceeecCCcc
Confidence 999999999999988776554433332 333323 677788899999998754
No 67
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-33 Score=260.74 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=200.5
Q ss_pred eEEEEecCccccEEEEEc-----cC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEE
Q 013881 141 KLLTQLEGHQKVVSGITL-----PS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKA 214 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~-----s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 214 (434)
++...|++|.+.|++++| ++ ++++|+||+.|++|++||+.+.+.....
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-------------------------- 65 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-------------------------- 65 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS--------------------------
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc--------------------------
Confidence 667889999999999999 66 9999999999999999998765321000
Q ss_pred EECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEec
Q 013881 215 WNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS 290 (434)
Q Consensus 215 w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 290 (434)
......+.+|...|.+++|+++ ++++|+.|++|++||++++ +....+.+|...|.+++|+ +++|++++
T Consensus 66 ----~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 66 ----GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp ----EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred ----ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence 0001247789999999999988 9999999999999999987 6677889999999999996 56899999
Q ss_pred CCCcEEEEeCCCCeEEEEEc---cccccEEEEEEcC------------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCC
Q 013881 291 MDNSIRVWNLETLQCIQTLT---EHTSVVMSLLCWD------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 355 (434)
Q Consensus 291 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~~~------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 355 (434)
.|++|++||+... ....+. .|...|.++.|++ .+|++++.|+.|++||. .......+..| .
T Consensus 138 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~ 213 (343)
T 2xzm_R 138 AEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--E 213 (343)
T ss_dssp TTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--S
T ss_pred CCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--c
Confidence 9999999999843 333333 6889999999983 58999999999999994 33333334333 3
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-CcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-FAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
..+.+++|+|++. +|++++.|+.|++||+.. ......+.+...|.+++|+|++ +++ ++.|+.|++|++.+++.
T Consensus 214 ~~v~~~~~s~~g~---~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 214 SNVNHLSISPNGK---YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SCEEEEEECTTSS---EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCS
T ss_pred ccceEEEECCCCC---EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCC
Confidence 5689999987665 999999999999999954 3444444466789999999999 555 55688899999987653
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-33 Score=256.91 Aligned_cols=245 Identities=18% Similarity=0.196 Sum_probs=200.8
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccC--CCCEEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~ 179 (434)
...|...|.+++|+++ .+++|+.|+.|+|||+.++ .+++.++.+|.++|++++|++ ++++|+|++.|++|+|||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 3568889999999764 4788999999999999743 367889999999999999986 4899999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEE
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWK 255 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd 255 (434)
.+++... ...+..|...|.+++|+|+ +|++++.|+.|++||
T Consensus 85 ~~~~~~~-----------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd 129 (297)
T 2pm7_B 85 ENGRWSQ-----------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129 (297)
T ss_dssp SSSCBCC-----------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred CCCceEE-----------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence 8764211 1135678999999999974 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC---------------CEEEEecCCCcEEEEeCCCCe----EEEEEccccccE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVV 316 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v 316 (434)
++.... .....+.+|...|.+++|++ ++|++|+.|++|++||+++++ ....+.+|...|
T Consensus 130 ~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 130 FKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp BCSSSC--BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred ecCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 987532 22456778999999999975 489999999999999998765 677889999999
Q ss_pred EEEEEcC-----CEEEEEeCCCcEEEEEcCCCCc--eEEEe-eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 317 MSLLCWD-----QFLLSCSLDKTIKVWFATDSGN--LEVTY-THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 317 ~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
.+++|++ .+|++++.|++|+|||++.... ..... .......+.+++|+|++. +|++++.|+.|+||+..
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC---EEEEEcCCCcEEEEEEC
Confidence 9999984 5899999999999999986532 11121 123345788999988765 89999999999999976
Q ss_pred C
Q 013881 389 S 389 (434)
Q Consensus 389 ~ 389 (434)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-34 Score=264.74 Aligned_cols=248 Identities=17% Similarity=0.212 Sum_probs=193.5
Q ss_pred EEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.... .
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------------------------~ 51 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------------------------A 51 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------E
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------E
Confidence 34578999999999999999999999999999999987643211 1
Q ss_pred EecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC----CEEEEecCCCcE
Q 013881 224 SLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSI 295 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i 295 (434)
.+.+|...|.+++|++ .+|++|+.|++|++||++.+.. .....+.+|...|.+++|++ .+|++++.|++|
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 3678999999999974 3899999999999999986531 34566788999999999964 479999999999
Q ss_pred EEEeCCCCe---EEEEEccccccEEEEEEcC-------------------CEEEEEeCCCcEEEEEcCCCCceEEEe-ee
Q 013881 296 RVWNLETLQ---CIQTLTEHTSVVMSLLCWD-------------------QFLLSCSLDKTIKVWFATDSGNLEVTY-TH 352 (434)
Q Consensus 296 ~vwd~~~~~---~~~~~~~~~~~v~~l~~~~-------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~ 352 (434)
++||++.+. ....+.+|...|.++.|++ ++|++++.|+.|++||++......... ..
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 999998763 2355678999999998874 489999999999999997654322221 12
Q ss_pred cCCccEEEEEeccCCC-CCcEEEEEeCCCeEEEEeCCCCc---cc-cc-ccccCcEEEEEecCCc-EEEEeCCCCCEEEE
Q 013881 353 NEEHGVLALCGMPDSE-GKPVLLCSCNDNSVRFYDLPSFA---ER-GK-IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~-~~-~~~~~~v~~~~~spdg-~l~s~~~dg~i~iw 425 (434)
.+...+.+++|+|+.. ...+|++++.|++|++|++.+.. .. .. ..+...|.+++|+|++ +|++++.|++|+||
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 2345799999998751 23489999999999999997632 11 11 2357889999999999 99999999999999
Q ss_pred Ecc
Q 013881 426 QWC 428 (434)
Q Consensus 426 d~~ 428 (434)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=261.54 Aligned_cols=280 Identities=15% Similarity=0.185 Sum_probs=225.2
Q ss_pred ccccccccceEEEEEeCC-----cEEEecCCCeEEEEeCCC-CceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 103 NNRAVIKTDILCRNWVQG-----NCMYGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~-----~~~~g~~d~~i~vwd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
.....|...|+|++|+++ .+++|+.|+.|++||+.+ +......+.+|...|++++|+|++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 446788999999999775 477788999999999997 54555889999999999999999999999999999999
Q ss_pred EECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE--eCC--EEEEEeCCCcEE
Q 013881 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV--GND--LLFAGTQDGAIL 252 (434)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~--~~~--~l~~g~~dg~i~ 252 (434)
||+.+++.+. +..|...|.+++| +++ +|++++.||.|+
T Consensus 113 wd~~~~~~~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 154 (368)
T 3mmy_A 113 WDLSSNQAIQ--------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154 (368)
T ss_dssp EETTTTEEEE--------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred EEcCCCCcee--------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence 9999887553 3458889999999 666 799999999999
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEc----cccccEEEEEEcCCE---
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT----EHTSVVMSLLCWDQF--- 325 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~~~~~--- 325 (434)
+||++.. +.+..+..+. .+.++.+.+..+++++.++.+++||++......... .+...+.++......
T Consensus 155 vwd~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 155 FWDTRSS----NPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp EECSSCS----SCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred EEECCCC----cEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 9999987 5566666554 678888888899999999999999998765433322 233344444444433
Q ss_pred -EEEEeCCCcEEEEEcCCCC---ceEEEeeecCC----------ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 326 -LLSCSLDKTIKVWFATDSG---NLEVTYTHNEE----------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 326 -l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
+++++.|+.|++||++... ....+..+... ..+.+++++|++. +|++++.||.|++||+.+++
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---TLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---CEEEEETTSCEEEEETTTTE
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC---EEEEEccCCeEEEEECCCCc
Confidence 9999999999999998773 33344333321 1588999988654 89999999999999999998
Q ss_pred cccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 392 ERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 392 ~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.+..+. |...|++++|+|++ +|++++.|+..+.|++.
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 307 KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 887776 47889999999999 99999998866555543
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-33 Score=259.19 Aligned_cols=251 Identities=20% Similarity=0.341 Sum_probs=210.9
Q ss_pred eEEEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
++..+|+||.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+.....
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------------------------- 77 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------------------------- 77 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE-------------------------------
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce-------------------------------
Confidence 677789999999999999997 689999999999999999876532111
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcE
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI 295 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 295 (434)
....+.+|...|.+++|+++ +|++++.|+.|++|+.... ........+...+..+.+. +++|++++.|+.+
T Consensus 78 -~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 78 -PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred -eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc----ceeeeecCCCCceeEEEEeecCccceeecCCCeE
Confidence 01246789999999999998 9999999999999999876 5555666677777777775 5689999999999
Q ss_pred EEEeCCCCeE-EEEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCC
Q 013881 296 RVWNLETLQC-IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 296 ~vwd~~~~~~-~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
++||+..... ...+..|...+..+.+. ..++++++.|+.|++||+++......+..+. ..+.+++++|++.
T Consensus 153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~-- 228 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGS-- 228 (340)
T ss_dssp EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSS--
T ss_pred EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCC--
Confidence 9999987554 34456789999999987 3578999999999999999887766666554 4688999987655
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+|++++.|+.|++||+.+.+.+..+.+...|.++.|+|++.+++++.|+.|+|||++++.+
T Consensus 229 -~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 229 -LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp -EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred -EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 9999999999999999999999988889999999999999777788899999999987653
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=270.74 Aligned_cols=312 Identities=11% Similarity=0.157 Sum_probs=225.6
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCc----------eEEEEecCcc------------ccEEEEEccC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF----------KLLTQLEGHQ------------KVVSGITLPS 160 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~----------~~~~~l~~h~------------~~V~~l~~s~ 160 (434)
...+.+.|.|++|+++ .+++|+.|+.|+||++.++. +++..+.+|. +.|++++|+|
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 4567789999999765 47778899999999999762 2688999998 8899999999
Q ss_pred CC--CEEEEEECCCcEEEEECCCCceEEEE-ecCCceEEEEeC---CCE-EEEEcCCcEEEEECCCCce-EEecCCCCcE
Q 013881 161 GS--DKLYSGSKDETVRVWDCASGQCAGVI-NLGGEVGCMISE---GPW-IFIGVTNFVKAWNTQTNTD-LSLSGPVGQV 232 (434)
Q Consensus 161 ~~--~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~---~~~-l~~~~~~~i~~w~~~~~~~-~~~~~~~~~v 232 (434)
++ .+|++++.|++|++||+.+++..... ........+... ..+ +....... +....... ....+|...|
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD---LMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE---EEEEEEEEEEECSCCSSCC
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh---eeeeccceEEeccCCCcce
Confidence 98 89999999999999999876543211 000000000000 000 00000000 11111111 1246799999
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce-------eecCccceEEEEEECC---CEEEEecCCCcEEEEeC
Q 013881 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA-------SLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 233 ~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 300 (434)
.+++|+++ +|++| .|+.|++||++... .... .+.+|...|.+++|++ ++|++++.||.|++||+
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 99999998 88888 89999999998542 2222 3668999999999974 68999999999999999
Q ss_pred CCCeE----EEEEccccc------------cEEEEEEc--CCEEEEEeCCCcEEEEEcCC-CCceEEEeeecCCcc----
Q 013881 301 ETLQC----IQTLTEHTS------------VVMSLLCW--DQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHG---- 357 (434)
Q Consensus 301 ~~~~~----~~~~~~~~~------------~v~~l~~~--~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~---- 357 (434)
++++. +..+..|.. .|.+++|+ +++|++++. +.|++||++. ...+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888876 89999998 679999998 9999999987 666666655532111
Q ss_pred ---------EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc---------------------------------c
Q 013881 358 ---------VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG---------------------------------K 395 (434)
Q Consensus 358 ---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------------~ 395 (434)
+..++|+|++. +|++++.||.|++||+.+++.+. .
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~---~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDS---VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSS---EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred cccccccccceEEEECCCCC---EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccc
Confidence 23477776654 89999999999999999876543 1
Q ss_pred ccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 396 IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 396 ~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+.....|..++|+|++ +|++++.++ +++|.-+
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1224568899999999 999888876 8888643
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.6e-33 Score=263.21 Aligned_cols=276 Identities=13% Similarity=0.146 Sum_probs=218.1
Q ss_pred ccccccceEEEEEeCCc---EEEecCCCeEEEEeCCCCceEEEEec--CccccEEEEEccC-CCCEEEEEECCCcEEEEE
Q 013881 105 RAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPS-GSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~---~~~g~~d~~i~vwd~~~~~~~~~~l~--~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd 178 (434)
...|...|.|++|+++. +++|+.|+.|++||+.++ +....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 45678899999997764 888999999999999976 4555554 7999999999999 789999999999999999
Q ss_pred CCCCceEEEEecC----CceEEEE--eCCCEEEEE-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCC
Q 013881 179 CASGQCAGVINLG----GEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQD 248 (434)
Q Consensus 179 ~~~~~~~~~~~~~----~~~~~~~--~~~~~l~~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~d 248 (434)
+.+ +.+..+... ..+.++. +++.+++++ .++.|++||+.......+..|...|.+++|+++ +|++++.|
T Consensus 148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 996 444444432 3455554 466777765 588999999976666688899999999999988 89999999
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEcccc------------
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHT------------ 313 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------ 313 (434)
+.|++||++...........+ +|...|.+++|++ ++|++++.|+.|++||+++++.+..+..|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA 305 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE
Confidence 999999999743322344444 6999999999975 689999999999999999988877776553
Q ss_pred -----ccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 314 -----SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 314 -----~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
..+..+.++ +++ +++.|+.|++||+.+++.+..+..+.....+..++|+|++. +|++++ |+.|++||
T Consensus 306 ~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~---~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 306 TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD---VLASGM-GFNILIWN 379 (383)
T ss_dssp EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS---EEEEEE-TTEEEEEE
T ss_pred eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc---EEEEec-CCcEEEEe
Confidence 233334444 333 77789999999999988877776655445566668877655 888886 99999999
Q ss_pred CCC
Q 013881 387 LPS 389 (434)
Q Consensus 387 ~~~ 389 (434)
+++
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 875
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=250.99 Aligned_cols=251 Identities=25% Similarity=0.346 Sum_probs=214.4
Q ss_pred eCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEE
Q 013881 135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKA 214 (434)
Q Consensus 135 d~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 214 (434)
|..+++++++.+.+|.+.|++++| +++++|++++.||.|++||+.+++....
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------------------- 54 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV--------------------------- 54 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE---------------------------
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE---------------------------
Confidence 455667899999999999999999 9999999999999999999988765543
Q ss_pred EECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC
Q 013881 215 WNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD 292 (434)
Q Consensus 215 w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d 292 (434)
+..|...|.+++|+++ +|++++.|+.|++|++..... .+....+.+|...|.++.++++++++++.|
T Consensus 55 ----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d 123 (313)
T 3odt_A 55 ----------VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-EDPLYTLIGHQGNVCSLSFQDGVVISGSWD 123 (313)
T ss_dssp ----------EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-SCC-CEECCCSSCEEEEEEETTEEEEEETT
T ss_pred ----------eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-CCcccchhhcccCEEEEEecCCEEEEEeCC
Confidence 4567889999999998 999999999999999976532 245677889999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCC
Q 013881 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (434)
+.|++|| .++.+..+..|...+.++.+. +++|++++.|+.|++||.. .... .........+.+++++++..
T Consensus 124 ~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~-~~~~~~~~~i~~~~~~~~~~- 197 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIK-TFSGIHNDVVRHLAVVDDGH- 197 (313)
T ss_dssp SEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEE-EECSSCSSCEEEEEEEETTE-
T ss_pred CCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEE-EEeccCcccEEEEEEcCCCe-
Confidence 9999999 778889999999999999885 7899999999999999932 2233 33332446788999887653
Q ss_pred CcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+++++.|+.|++||+.+++.+..+. |...|++++|+|++.|++++.||.|++||+.+++.+
T Consensus 198 ---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 198 ---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLK 259 (313)
T ss_dssp ---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEE
T ss_pred ---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCcee
Confidence 8899999999999999998888776 688999999999998899999999999999988753
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=268.17 Aligned_cols=275 Identities=15% Similarity=0.202 Sum_probs=219.3
Q ss_pred cccccceEEEEEeC-C--cEEEecCCCeEEEEeCCC---Cc--eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEE
Q 013881 106 AVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGD---GF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (434)
Q Consensus 106 ~~~~~~i~c~~~~~-~--~~~~g~~d~~i~vwd~~~---~~--~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 177 (434)
..|.++|+|++|++ + .+++|+.|+.|++||+.+ +. +....+ +|...|++++|+|++++|++++.||+|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 56889999999987 4 478899999999999876 31 223333 499999999999999999999999999999
Q ss_pred ECC---CCceEEEEe-------------cCCceEEEE----eCCCEEEEE-cCCcEEEEECCCCceE-EecC--CCCcEE
Q 013881 178 DCA---SGQCAGVIN-------------LGGEVGCMI----SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSG--PVGQVY 233 (434)
Q Consensus 178 d~~---~~~~~~~~~-------------~~~~~~~~~----~~~~~l~~~-~~~~i~~w~~~~~~~~-~~~~--~~~~v~ 233 (434)
|+. +++.+..+. ....+.++. .++.+++++ .++.|++||+++++.+ .+.. |...|.
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 995 555554433 222333433 245566654 5899999999998876 5566 889999
Q ss_pred EEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEECC------CEEEEecCCCcEEEEeCCCCe
Q 013881 234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGA------NKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 234 ~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~ 304 (434)
+++|+++ +|++|+.||.|++||++.. +++..+. .|...|.++.+.+ .+|++++.|+.|++||+++++
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 9999988 9999999999999999986 6666665 7888999997753 389999999999999999999
Q ss_pred EEEEEcc--------------------------ccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeec----
Q 013881 305 CIQTLTE--------------------------HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN---- 353 (434)
Q Consensus 305 ~~~~~~~--------------------------~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---- 353 (434)
++..+.+ |...|.+++++ +++|++++.|+.|++||+.+.+....+..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 374 (437)
T 3gre_A 295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSD 374 (437)
T ss_dssp EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCC
T ss_pred EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCc
Confidence 9888764 45567788887 5689999999999999999887776665431
Q ss_pred -------------------------------CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 354 -------------------------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 354 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
+...+.++++.+.. +..+|++|+.||.|+||+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~-~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 375 VFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD-ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS-SSEEEEEEETTSCEEEEC
T ss_pred eEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC-CceEEEEEcCCceEEEeC
Confidence 34568888888872 234999999999999995
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-33 Score=267.96 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=224.1
Q ss_pred EEEEEeCCcEEE---ecCCCeEEEEeCCCCce---EEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceE
Q 013881 113 LCRNWVQGNCMY---GEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCA 185 (434)
Q Consensus 113 ~c~~~~~~~~~~---g~~d~~i~vwd~~~~~~---~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (434)
.++.+.++...+ ++.||.|+||++....+ .+..+.+|.+.|++++|+| ++++|++++.||+|+|||+.++...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 346666665433 67899999999975422 3456789999999999999 9999999999999999999987432
Q ss_pred EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc
Q 013881 186 GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
... ......+.+|...|.+++|+++ +|++++.|+.|++||+.++
T Consensus 118 ~~~------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--- 164 (402)
T 2aq5_A 118 LPL------------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--- 164 (402)
T ss_dssp SCB------------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---
T ss_pred ccc------------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---
Confidence 110 0112246789999999999987 8999999999999999987
Q ss_pred cccceee--cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEE-cccccc-EEEEEEc--CCEEEEE---eC
Q 013881 263 FEPAASL--KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSV-VMSLLCW--DQFLLSC---SL 331 (434)
Q Consensus 263 ~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~l~~~--~~~l~s~---s~ 331 (434)
+....+ ..|...|.+++|+ +++|++++.|+.|++||+++++.+..+ ..|... +.++.|+ +.+|+++ +.
T Consensus 165 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 165 -AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp -EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred -CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 667777 7899999999996 568999999999999999999999998 788776 8888887 5677777 68
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEE-EEeCCCeEEEEeCCCCcc-c---ccccccCcEEEEE
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL-CSCNDNSVRFYDLPSFAE-R---GKIFAKQEIRAIQ 406 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~---~~~~~~~~v~~~~ 406 (434)
|+.|++||+++...............+..++++++.. +|+ +++.|+.|++||+.+++. + ..+.+...|.+++
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN---IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT---EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC---EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 9999999999876644444444445688888887655 564 566899999999998874 2 2233568999999
Q ss_pred ecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 407 LGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 407 ~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
|+|++ ++++ .++.+++|++.++++
T Consensus 321 ~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 321 YMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred Eeccccccee--cceeEEEEEcCCCcE
Confidence 99999 6654 466999999998754
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.9e-32 Score=252.22 Aligned_cols=271 Identities=12% Similarity=0.099 Sum_probs=228.0
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc----eEEEEecCCceEEEEe--CCC-EEEEE-cCCcE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEVGCMIS--EGP-WIFIG-VTNFV 212 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~--~~~-~l~~~-~~~~i 212 (434)
+.+....+|.+.|++++|+|++++|++++.|+.|++||+.+++ ..........+.++.+ ++. +++++ .++.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 4455567899999999999999999999999999999999887 5555566667776653 677 66654 58999
Q ss_pred EEEEC-CCCceEEecC--CCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCC---------CCCccccceeecCccceEEEE
Q 013881 213 KAWNT-QTNTDLSLSG--PVGQVYAMAVGND-LLFAGTQDGAILAWKFNV---------TTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 213 ~~w~~-~~~~~~~~~~--~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~---------~~~~~~~~~~~~~h~~~v~~l 279 (434)
++|++ .+++...+.. |...|.+++|++. .|++++.|+.|++||++. . +++..+. |...|.++
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN----LNSNNTK-VKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE----SCSSSSS-SCCCEEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC----CeeeEEe-eCCceEEE
Confidence 99999 9998888888 9999999999965 999999999999999986 4 3444454 88999999
Q ss_pred EECCCEEEEecCCCcEEEEeCCC-Ce--EEEEEccccccEEEEEEcC---CEEEEEeCCCcEEEEEcCCC------CceE
Q 013881 280 VVGANKLYSGSMDNSIRVWNLET-LQ--CIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDS------GNLE 347 (434)
Q Consensus 280 ~~~~~~l~s~s~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~------~~~~ 347 (434)
.++++.+++++.|+.|++||+++ ++ .......|...+.++++++ ++|++++.||.|++|+++.. ....
T Consensus 157 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred EecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 99998999999999999999998 44 3445557888999999974 79999999999999999876 5555
Q ss_pred EEeeecC-------CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-c-cCcEEEEEecCCc-EEEEeC
Q 013881 348 VTYTHNE-------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-A-KQEIRAIQLGPGG-LFFTGD 417 (434)
Q Consensus 348 ~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~spdg-~l~s~~ 417 (434)
.+..+.. ...+.+++++|++. +|++++.||.|++||+.+++.+..+. + ...|.+++ |++ +|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCC---EEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 5555543 33789999987655 89999999999999999998887776 4 78899999 999 999999
Q ss_pred CCCC
Q 013881 418 GTGQ 421 (434)
Q Consensus 418 ~dg~ 421 (434)
.||.
T Consensus 312 ~Dg~ 315 (342)
T 1yfq_A 312 SDDT 315 (342)
T ss_dssp ECTH
T ss_pred cCCc
Confidence 9998
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.3e-33 Score=265.11 Aligned_cols=272 Identities=14% Similarity=0.185 Sum_probs=223.1
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEE--EEeCCCEEEEE-cCCcEEEEECCCCceEEe-c
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSL-S 226 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~~~~i~~w~~~~~~~~~~-~ 226 (434)
..+++++|+|++++|++++.|+.|++||+.+++....+........ +.+++.+++++ .++.|++||+.+++.... .
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3455799999999999999999999999998776655554433322 23466777765 588999999999888754 6
Q ss_pred CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC
Q 013881 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 302 (434)
.|...|.+++|+++ +|++++.|+.|++||+... +....+.+|...|.+++|+ +++|++++.|+.|++||+++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 89999999999988 9999999999999999987 6677888999999999996 56899999999999999999
Q ss_pred CeEEEEEcc---ccccEEEEEE---------------------c--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc
Q 013881 303 LQCIQTLTE---HTSVVMSLLC---------------------W--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356 (434)
Q Consensus 303 ~~~~~~~~~---~~~~v~~l~~---------------------~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 356 (434)
++.+..+.. |...+.++.+ + +++|++++.||.|++||+++...+..+.. .+..
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 291 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTC 291 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSS
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCC
Confidence 999999875 5566777766 2 56999999999999999998876655543 2345
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-ccccc--ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCC
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE-RGKIF--AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g 430 (434)
.+.+++|+|+.. .+|++++.||.|++||+.+++. +..+. +...|.++.+. ++ +|++++.||.|++|++.+.
T Consensus 292 ~v~~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 292 SCNSLTVDGNNA--NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp CEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred CceeEEEeCCCC--CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCC
Confidence 789999987543 3899999999999999998754 44443 46778888665 66 9999999999999998874
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-32 Score=257.04 Aligned_cols=236 Identities=26% Similarity=0.443 Sum_probs=198.6
Q ss_pred cceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 110 TDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 110 ~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
..|.|++|+++ .+++|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++|++||+.++++...
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence 35999999765 4778899999999999998 89999999999999999999999999999999999999999877654
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
+. +...+.++++++ + +|++|+.|+.|++||++++.
T Consensus 203 ~~--------------------------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~---- 240 (393)
T 1erj_A 203 LS--------------------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF---- 240 (393)
T ss_dssp EE--------------------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----
T ss_pred EE--------------------------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----
Confidence 32 345688889987 4 99999999999999998763
Q ss_pred cceee-------cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC------------eEEEEEccccccEEEEEEc-
Q 013881 265 PAASL-------KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL------------QCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 265 ~~~~~-------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~------------~~~~~~~~~~~~v~~l~~~- 322 (434)
.+..+ .+|...|.+++|+ +++|++++.|+.|++||+++. .+...+.+|...|.+++++
T Consensus 241 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 320 (393)
T 1erj_A 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 320 (393)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC
Confidence 33333 5799999999996 569999999999999999763 4566788999999999998
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC---CCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD---SEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 323 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
+.+|++++.|+.|++||+.++..+..+..|. ..+.++++.+. .++..+|++|+.|++|+||++...
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 6899999999999999999988777766655 45888888763 235569999999999999998653
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=269.77 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=230.1
Q ss_pred ccccEEEEEccCCCC-EEEEE----------ECCCcEEEEECCCCc---eEEEEecCCceEEEEe--CCCEEEEE-cCCc
Q 013881 149 HQKVVSGITLPSGSD-KLYSG----------SKDETVRVWDCASGQ---CAGVINLGGEVGCMIS--EGPWIFIG-VTNF 211 (434)
Q Consensus 149 h~~~V~~l~~s~~~~-~l~s~----------s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~ 211 (434)
+...|.+++|+|+++ +|+++ +.|+.|+|||+.+++ .+..+.....+.++.+ ++.+|+++ .++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 345788999999987 99999 899999999999885 5555666677777764 66666665 5889
Q ss_pred EEEEECCC----C-ceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc-----cccceeecCccceEEE
Q 013881 212 VKAWNTQT----N-TDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC-----FEPAASLKGHSLAVVS 278 (434)
Q Consensus 212 i~~w~~~~----~-~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~ 278 (434)
|++|++.. . ....+.+|...|.+++|+++ +|++++.|+.|++||+...... ......+..|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999988 2 34478889999999999975 8999999999999999887410 1122344678999999
Q ss_pred EEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccc------cccEEEEEEcC---CEEEEEeCCC---cEEEEEcCCC
Q 013881 279 LVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEH------TSVVMSLLCWD---QFLLSCSLDK---TIKVWFATDS 343 (434)
Q Consensus 279 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~~~---~~l~s~s~dg---~i~vwd~~~~ 343 (434)
++|++ .+|++++.|+.|++||+++++.+..+..+ ...|.+++|++ .+|++++.|+ .|++||+++.
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 99974 58999999999999999999999999877 78999999983 4899999998 9999999986
Q ss_pred CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc--EEEEeCCCC
Q 013881 344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG--LFFTGDGTG 420 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg--~l~s~~~dg 420 (434)
..........+...+.+++|+|. ++.+|++++.|+.|++||+.+++.+..+. |...|.+++|+|++ +|++++.||
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~--~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQ--DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSS--CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecCccCceeEEEeCCC--CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 43322222123356899999872 22389999999999999999998887765 57889999999997 999999999
Q ss_pred CEEEEEccCCcc
Q 013881 421 QVRVWQWCNGPV 432 (434)
Q Consensus 421 ~i~iwd~~~g~~ 432 (434)
.|+||++.+++.
T Consensus 329 ~i~iw~~~~~~~ 340 (416)
T 2pm9_A 329 KIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEESCCCCC
T ss_pred cEEEEEccCCCC
Confidence 999999988753
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-32 Score=255.84 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=211.1
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCc---eEEEEecCccccEEEEEccC--CCCEEEEEECCCcEE
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVR 175 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~---~~~~~l~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~ 175 (434)
.....|..+|+|++|+++ .+++++.|+.|++||+.++. +.+..+.+|...|++++|+| ++++|++++.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345678999999999765 37888899999999998652 57788899999999999999 699999999999999
Q ss_pred EEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcE
Q 013881 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAI 251 (434)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i 251 (434)
+||+.+++..... ... .....+..|...|.+++|+++ +|++++.||.|
T Consensus 85 vwd~~~~~~~~~~---~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 85 LWEEDPDQEECSG---RRW-------------------------NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp EEEECTTSCTTSS---CSE-------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred EEecCCCcccccc---cCc-------------------------ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 9999886421000 000 001246689999999999975 89999999999
Q ss_pred EEEEcCCCCCccccc---------eeecCccceEEEEEEC-----CCEEEEecCCCcEEEEeCCCCeE--EEEEcccccc
Q 013881 252 LAWKFNVTTNCFEPA---------ASLKGHSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSV 315 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~---------~~~~~h~~~v~~l~~~-----~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~ 315 (434)
++||++......... .....|...+.++.++ ++++++++.|+.+.+|+...++. +..+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 999998764321100 0112677888999985 56899999999999998888765 7788899999
Q ss_pred EEEEEEc--C----CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE----EeCCCeEEEE
Q 013881 316 VMSLLCW--D----QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC----SCNDNSVRFY 385 (434)
Q Consensus 316 v~~l~~~--~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~dg~i~iw 385 (434)
|.+++|+ + ++|++++.|+.|++||++.............. ....... .....+.. +.....+.+|
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN--SNMFDNS---ADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------------C
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc--eeccCCC---cccccccccccccccceeeeec
Confidence 9999998 3 58999999999999999876443332222111 1111111 11112222 2234456666
Q ss_pred eCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 386 DLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 386 d~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+....+.+..+. |...|++++|+|++ +|++++.||.|+||++.+++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 666666666555 57889999999999 999999999999999998764
No 82
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-32 Score=253.56 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=232.9
Q ss_pred ccccEEEEEccCCCCEEEEEECCCcEEEEECCCC-ceEEEEecCCceEEEE--eCCCEEEEEcCCcEEEEECCCCceE--
Q 013881 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVINLGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-- 223 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~w~~~~~~~~-- 223 (434)
|.++|.+++|+||+++++++..++.+.+|..... +.+..+.+...+.++. +++.+++++.++.|++|++.++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 5678999999999999999988887777765544 4445555666676665 4778888888999999999876532
Q ss_pred --Ee--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcE
Q 013881 224 --SL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI 295 (434)
Q Consensus 224 --~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 295 (434)
.+ ..|...|.+++|+++ .|++++.|+.|++||+..... .....+..|...|.++.++ +++|++++.|+.|
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc--ceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 22 379999999999998 899999999999999987632 3566778899999999996 5689999999999
Q ss_pred EEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
++||+++++.+..+..|...|.+++++ +++|++++.|+.|++||+++...+..+. ....+..++++|+.. +|
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~---~l 239 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGE---WL 239 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSS---EE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCC---EE
Confidence 999999999999999999999999997 6799999999999999998876554432 345688899887655 89
Q ss_pred EEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
++++.|+.|++||+.+.+......+...|.+++|+|++ +|++++.||.|++||+.+++.
T Consensus 240 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 240 AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp EEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 99999999999999998877666778999999999999 999999999999999998864
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=257.92 Aligned_cols=252 Identities=16% Similarity=0.170 Sum_probs=204.2
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+++..+.+|.+.|++++|+|++++|++++.||.|+|||+.......
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------------------------- 47 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL---------------------------------- 47 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE----------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee----------------------------------
Confidence 5677889999999999999999999999999999999987432211
Q ss_pred ceEEecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC----CCEEEEecCC
Q 013881 221 TDLSLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMD 292 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~d 292 (434)
...+.+|...|.+++|++ .+|++++.||.|++||+..... .....+..|...|.+++|+ +++|++++.|
T Consensus 48 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 48 -IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp -EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred -eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 113678999999999973 3999999999999999988621 3667788899999999996 4589999999
Q ss_pred CcEEEEeCCCC--eEEEEEccccccEEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCCceEEEe--eec
Q 013881 293 NSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNLEVTY--THN 353 (434)
Q Consensus 293 g~i~vwd~~~~--~~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~ 353 (434)
+.|++||+++. .....+..|...|.+++|++ .+|++++.|+.|++||++......... ...
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 99999999887 34556778999999999974 689999999999999998766442221 122
Q ss_pred CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc------cccccccCcEEEEEecCCc-EEEEeCCCCCEEEEE
Q 013881 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd 426 (434)
+...+.+++|+|+...+.+|++++.||.|++||+.++.. .....+...|.+++|+|++ +|++++.||.|++|+
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 345699999988732245999999999999999998631 1122367889999999999 999999999999999
Q ss_pred ccC
Q 013881 427 WCN 429 (434)
Q Consensus 427 ~~~ 429 (434)
+..
T Consensus 285 ~~~ 287 (379)
T 3jrp_A 285 ENL 287 (379)
T ss_dssp EEE
T ss_pred CCC
Confidence 984
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.6e-31 Score=250.61 Aligned_cols=287 Identities=11% Similarity=0.081 Sum_probs=207.7
Q ss_pred EEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC-ceEEEEeCCCEEE-E-EcC
Q 013881 133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIF-I-GVT 209 (434)
Q Consensus 133 vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~-~~~ 209 (434)
+|++.+. +++..+.+|...|++++|+||+++|++|+.|+ ++|||+.+++.+....... ....+.+.+..++ + +.+
T Consensus 3 i~s~~~~-~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITR-NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred ccccccc-CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 4666665 67778899999999999999999999998876 7899999887776655442 2334445566554 3 346
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEE-
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS- 288 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s- 288 (434)
+.|++||..+++.+....+...|.++.++++.++++. |+.|++||+..... .+..+.. ...+.++ +..+++.
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~---~~~~~~~-~~~~~~~--s~~~la~~ 153 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK---RITDDIR-FGGVCEF--SNGLLVYS 153 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC---BSSCCEE-EEEEEEE--ETTEEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce---eeEEecc-CCceEEE--EccEEEEe
Confidence 7999999999988755567889999999999666654 78999999987621 2222322 3333444 4476665
Q ss_pred -ecCCCcEEEEeCCCCe----------------EEEEEccccccEEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCceEE
Q 013881 289 -GSMDNSIRVWNLETLQ----------------CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEV 348 (434)
Q Consensus 289 -~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~ 348 (434)
|+.||.|++||+++++ ++..+.+|...|.+++|+ +++|++++.|++ |++||+++++.+..
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 6899999999999865 278899999999999998 679999999998 99999999888777
Q ss_pred EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc--c--------------------c--ccCcEEE
Q 013881 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK--I--------------------F--AKQEIRA 404 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~--------------------~--~~~~v~~ 404 (434)
+....+...+.+++|+|++. +|++++.|++|++||+........ + . .......
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~---~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGS---KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EECTTCCSCEEEEEECTTSC---EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEcCCCCCcEEEEEECCCCC---EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 66322345799999988765 999999999999999976532111 0 0 0122367
Q ss_pred EEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 405 IQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 405 ~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
++|++|+ .|++++.||.+++|++..++
T Consensus 311 ~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 8999999 99999999999999988754
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-32 Score=253.88 Aligned_cols=243 Identities=20% Similarity=0.241 Sum_probs=195.6
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEccC--CCCEEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~ 179 (434)
...|.++|+|++|+++ .+++|+.|++|++||+.++. .++..+.+|.+.|++++|++ ++++|+|++.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4578999999999654 57889999999999998762 36788999999999999986 4899999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEE
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWK 255 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd 255 (434)
++++.... ..+.+|...|.+++|+|+ +|++|+.|+.|++||
T Consensus 89 ~~~~~~~~-----------------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 89 ENGTWEKS-----------------------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp SSSCCCEE-----------------------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred CCCcceEE-----------------------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 87642211 135679999999999985 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC-------------------CEEEEecCCCcEEEEeCCCC---eEEEEEcccc
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA-------------------NKLYSGSMDNSIRVWNLETL---QCIQTLTEHT 313 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~ 313 (434)
++.... ......+.+|...|.++.|++ .+|++++.|++|++||++.. +++..+.+|.
T Consensus 134 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 134 YTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp ECSSSC-EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred cCCCCC-cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence 986521 123455678998999888864 47999999999999999765 5778889999
Q ss_pred ccEEEEEEcC------CEEEEEeCCCcEEEEEcCCCC----ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEE
Q 013881 314 SVVMSLLCWD------QFLLSCSLDKTIKVWFATDSG----NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383 (434)
Q Consensus 314 ~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 383 (434)
..|.+++|++ ++|++++.|++|++||+.+.. ....+..+ ...+.+++|+|++. +|++++.|+.|+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~---~las~~~D~~v~ 287 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITAN---ILAVSGGDNKVT 287 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTC---CEEEEESSSCEE
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCC---EEEEEcCCCeEE
Confidence 9999999983 579999999999999987631 12223333 45799999988765 899999999999
Q ss_pred EEeCC
Q 013881 384 FYDLP 388 (434)
Q Consensus 384 iwd~~ 388 (434)
+|+..
T Consensus 288 lw~~~ 292 (316)
T 3bg1_A 288 LWKES 292 (316)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99975
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=258.57 Aligned_cols=282 Identities=12% Similarity=0.112 Sum_probs=224.5
Q ss_pred ccceEEEEEeC-CcEEEecCCCeEEEEeCCCCce---EEEEecC------------------------------------
Q 013881 109 KTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFK---LLTQLEG------------------------------------ 148 (434)
Q Consensus 109 ~~~i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~---~~~~l~~------------------------------------ 148 (434)
..++.|+.|++ +.+++++.++.|++||+.++ + .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSP-NHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETT-TEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCC-CcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 45889999965 45777788999999999988 5 5555543
Q ss_pred ------------------ccccEEEEEccCCCCEE-EEEECCCcEEEEECC--CCceEEEEecCCceEEEEeCCCEEEEE
Q 013881 149 ------------------HQKVVSGITLPSGSDKL-YSGSKDETVRVWDCA--SGQCAGVINLGGEVGCMISEGPWIFIG 207 (434)
Q Consensus 149 ------------------h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (434)
|.+.|++++|+|++++| ++++.||+|+|||+. +++.+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------ 144 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------ 144 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------
Confidence 34479999999999996 899999999999998 777665432
Q ss_pred cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCC-
Q 013881 208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN- 284 (434)
Q Consensus 208 ~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 284 (434)
...|...|.+++|+|+ +|++|+.+|.|++|++............+.+|...|.++.|+++
T Consensus 145 -----------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 145 -----------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDS 207 (450)
T ss_dssp -----------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECT
T ss_pred -----------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCC
Confidence 2356788999999998 99999999999999998764321134477789999999998654
Q ss_pred ----EEEEecCCCcEEEEeCCCCeEEEE-EccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeee------
Q 013881 285 ----KLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH------ 352 (434)
Q Consensus 285 ----~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------ 352 (434)
+|++++.|+.|++||+++++++.. +.+|...|.+++|+ +++|++++.|+.|++||+.+++.+..+..+
T Consensus 208 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 287 (450)
T 2vdu_B 208 DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPY 287 (450)
T ss_dssp TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGG
T ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhh
Confidence 899999999999999999998887 56899999999996 889999999999999999988776666532
Q ss_pred -----------------cCCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeC--CCC---cccccccccCcEEEEEecC
Q 013881 353 -----------------NEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL--PSF---AERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 353 -----------------~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~v~~~~~sp 409 (434)
.....+..+.+.++.. +|++++ .|+.|++|++ .+. +.+..+.....|.+++|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP---FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECSSSS---EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET
T ss_pred hhhcccccccccccccccceEEEEEEEEeCCCC---EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC
Confidence 1234577888877554 888888 8999999999 554 5555555568999999999
Q ss_pred Cc-EEEEeCC------CCCEEEEEccC
Q 013881 410 GG-LFFTGDG------TGQVRVWQWCN 429 (434)
Q Consensus 410 dg-~l~s~~~------dg~i~iwd~~~ 429 (434)
++ ++++++. +..|.+|.+..
T Consensus 365 ~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 DEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CcEEEEEecccCCCCCCcceEEEEEEc
Confidence 77 4444443 56689998764
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-31 Score=273.32 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=210.7
Q ss_pred ceEEEEecCccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 140 FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 140 ~~~~~~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
.+....+++|.+.|++|+|+|++ ++|+||+.|++|++||+.+......
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~------------------------------- 420 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG------------------------------- 420 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-------------------------------
Confidence 35667899999999999999864 7999999999999999976532100
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
.....+.+|...|.+++|+++ +|++|+.|+.|++||+.++ .....+.+|...|.+++|+ +++|++++.|++
T Consensus 421 -~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~ 495 (694)
T 3dm0_A 421 -VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495 (694)
T ss_dssp -EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred -cccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 001246789999999999998 9999999999999999887 6678889999999999997 568999999999
Q ss_pred EEEEeCCCCeEEEEE---ccccccEEEEEEcC----CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 295 IRVWNLETLQCIQTL---TEHTSVVMSLLCWD----QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 295 i~vwd~~~~~~~~~~---~~~~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
|++||+......... .+|...|.++.|++ ..|++++.|+.|++||+++......+..|. ..+.+++++|++
T Consensus 496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg 573 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDG 573 (694)
T ss_dssp EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTS
T ss_pred EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCC
Confidence 999998765443332 46888999999983 479999999999999999887766665554 468899998765
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 368 EGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 368 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
. +|++++.|+.|++||+.+++.+..+.+...|.+++|+|++ +|+++ .|+.|+|||+.+++++
T Consensus 574 ~---~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 574 S---LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIV 636 (694)
T ss_dssp S---EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEE
T ss_pred C---EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCCh
Confidence 5 9999999999999999999998888888899999999999 55555 5566999999987653
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.8e-32 Score=261.38 Aligned_cols=257 Identities=22% Similarity=0.337 Sum_probs=205.8
Q ss_pred ccccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
...|..+|.|+.|....+++|+.||.|++||+.++ +.+..+.+|...|.+++|++ .+|++++.||+|++||+.+++.
T Consensus 169 ~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 169 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred EcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence 45688899999997778999999999999999998 88999999999999999974 5999999999999999988765
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccc
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
+... ..+.+|...|.++.+.++.+++|+.||.|++||+++. +
T Consensus 246 ~~~~----------------------------------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~----~ 287 (435)
T 1p22_A 246 ITLR----------------------------------RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC----E 287 (435)
T ss_dssp CEEE----------------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC----C
T ss_pred ceee----------------------------------eEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC----c
Confidence 4221 1367899999999998889999999999999999987 6
Q ss_pred cceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCC
Q 013881 265 PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~ 344 (434)
.+..+.+|...|.++.++++++++|+.||.|++||+++++++..+.+|...|.++++++++|++++.||.|++||+.+..
T Consensus 288 ~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 288 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ---------ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC
Q 013881 345 ---------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 345 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 409 (434)
.+..+..+. ..+.++++ ++ .+|++++.||.|++||+.+...........+..++.|.+
T Consensus 368 ~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVEHS--GRVFRLQF--DE---FQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp STTSCTTTTEEEEECCCS--SCCCCEEE--CS---SCEEECCSSSEEEEEC-----------------------
T ss_pred CccccccchheeeccCCC--CCeEEEEe--CC---CEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 444444444 45777776 22 379999999999999999877666655556666666643
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-32 Score=255.94 Aligned_cols=245 Identities=13% Similarity=0.174 Sum_probs=203.8
Q ss_pred ccccceEEEEEeCC------cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEEC
Q 013881 107 VIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 107 ~~~~~i~c~~~~~~------~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~ 179 (434)
.|...|+|++|+++ .+++|+.|+.|++||+.++ +.+..+.+|...|++++|+| ++++|++++.||+|++||+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 36678999999776 4888999999999999998 88999999999999999999 9999999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcC
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~ 257 (434)
.+++.+..+. .+..|...|.+++|+++ .|++++.||.|++||++
T Consensus 146 ~~~~~~~~~~----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 146 QTDTLVAIFG----------------------------------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp TTTEEEEEEC----------------------------------STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ecCeEEEEec----------------------------------ccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 9987765432 12578999999999988 99999999999999998
Q ss_pred CCCCcc------------------------ccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCe---------
Q 013881 258 VTTNCF------------------------EPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ--------- 304 (434)
Q Consensus 258 ~~~~~~------------------------~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~--------- 304 (434)
...... ........|...|.++.+++++|++++.|+.|++||+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccC
Confidence 752110 01122334899999999999999999999999999998764
Q ss_pred -----EEEEEccccccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceE----EEeeecCCccEEEEEeccCCCCCc
Q 013881 305 -----CIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLE----VTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 305 -----~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
.+..+..|...|.+++++ +++|++++.||.|++||+.+..... .+..+.....+..++|++++.
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--- 348 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS--- 348 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS---
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC---
Confidence 478888899999888776 6799999999999999999876432 344443356899999988655
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 013881 372 VLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~ 389 (434)
+|++++.||.|++||+.+
T Consensus 349 ~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEEETTSEEEEEEC--
T ss_pred eEEEEeCCCEEEEEEecC
Confidence 999999999999999863
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-31 Score=274.52 Aligned_cols=282 Identities=16% Similarity=0.279 Sum_probs=240.6
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC-CceEEEE--eCCCEEEEE-cCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMI--SEGPWIFIG-VTNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~-~~~~i~~w~ 216 (434)
+..+.+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..+ ..+.++. +++.+++++ .++.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 567788999999999999999999999999999999999999999888854 5566664 467777665 588999999
Q ss_pred CCCCceE-EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEec
Q 013881 217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGS 290 (434)
Q Consensus 217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s 290 (434)
+.+++.. .+.+|...|.+++|+++ .|++++.||.|++||+.... .....+.+|...|.++.|++ +.|++++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---EEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9998876 67889999999999998 89999999999999998753 45667888999999999975 4899999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccc-ccEEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEecc
Q 013881 291 MDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 291 ~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (434)
.||.|++||+.+++....+..+. ..+.+++++ +.+|++++.|+.|++||+.+...+..+..+. ..+.+++++|
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~ 238 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHP 238 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECS
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcC
Confidence 99999999999988888777655 888899885 5799999999999999998887766665544 4588899987
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc--EEEEeCCCCCEEEEEccCC
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g 430 (434)
+.+ +|++++.||.|++||+.+++....+.. ...+.+++|+|++ .+++++.++.+.+|++..+
T Consensus 239 ~~~---~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 239 TLP---IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp SSS---EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred CCC---EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 665 899999999999999999888777654 6789999999998 3466666777999998754
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-31 Score=250.07 Aligned_cols=272 Identities=11% Similarity=0.098 Sum_probs=206.4
Q ss_pred cccEEEEEccCCCCEEEEEECCC-------cEEEEECCCCce--------EEEEec---CCceEEEEeCCCEEEEEc---
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDE-------TVRVWDCASGQC--------AGVINL---GGEVGCMISEGPWIFIGV--- 208 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg-------~v~iwd~~~~~~--------~~~~~~---~~~~~~~~~~~~~l~~~~--- 208 (434)
.-+|++++|+||+++|++|+.|. .|++|++..... ...+.. ...+.++.+++..++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35899999999999999998654 599999876532 122222 235667777777777652
Q ss_pred ---------CCcEEEEECCCCceE----------EecCCCCcEEEEEEeCC--EE--EEEeCCCcEEEEEcCCCCCcccc
Q 013881 209 ---------TNFVKAWNTQTNTDL----------SLSGPVGQVYAMAVGND--LL--FAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 209 ---------~~~i~~w~~~~~~~~----------~~~~~~~~v~~l~~~~~--~l--~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
++.+++|++...... ....+...+.+++|+|+ ++ ++++.|++|++||+.+. +.
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----~~ 169 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----TE 169 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----EE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----cE
Confidence 567999998665421 11234567899999998 44 45568999999999987 45
Q ss_pred ceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEE--EccccccEEEEEEc--CCEEEEEeCCC----cE
Q 013881 266 AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT--LTEHTSVVMSLLCW--DQFLLSCSLDK----TI 335 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~--~~~l~s~s~dg----~i 335 (434)
+..+. |...|.+++|+ ++++++++. +.+++|+..+++.+.. ...|...|.+++|+ ++++++++.|+ .+
T Consensus 170 ~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 170 KFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 55554 77789999996 458888875 5567777777666543 45688899999988 67899998887 68
Q ss_pred EEEEcCCCCceE--EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc--cccCcEEEEEecCCc
Q 013881 336 KVWFATDSGNLE--VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI--FAKQEIRAIQLGPGG 411 (434)
Q Consensus 336 ~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~spdg 411 (434)
++|++....... ......+...+.+++|+|++. +|++|+.|++|+|||+.+++.+..+ .|...|++++|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCC---ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 889887654322 122233445799999988765 9999999999999999999988764 378999999999999
Q ss_pred -EEEEeCCCCCEEEEEccCC
Q 013881 412 -LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 412 -~l~s~~~dg~i~iwd~~~g 430 (434)
+||+|+.|++|+||++...
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999654
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=246.34 Aligned_cols=247 Identities=18% Similarity=0.190 Sum_probs=202.9
Q ss_pred ccccccccceEEEEEeCC--cEEEecCCCeEEEEeCC--CCceEEEEecCccccEEEEEccCC--CCEEEEEECCCcEEE
Q 013881 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRV 176 (434)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~--~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~i 176 (434)
.....|..+|+|++|+++ .+++|+.|+.|++||+. +. +.+..+.+|...|++++|+++ +++|++++.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 345678999999999765 47778899999999998 44 778889999999999999987 999999999999999
Q ss_pred EECCCCc--eEEEEec-CCceEEEEe--C--CCEEEE-EcCCcEEEEECCCCc---eEEecCCCCcEEEEEEeC------
Q 013881 177 WDCASGQ--CAGVINL-GGEVGCMIS--E--GPWIFI-GVTNFVKAWNTQTNT---DLSLSGPVGQVYAMAVGN------ 239 (434)
Q Consensus 177 wd~~~~~--~~~~~~~-~~~~~~~~~--~--~~~l~~-~~~~~i~~w~~~~~~---~~~~~~~~~~v~~l~~~~------ 239 (434)
||+.+++ .+..+.. ...+.++.+ + +.++++ +.++.|++||+.... ...+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 5555553 456777654 3 556665 558899999998873 346778999999999998
Q ss_pred -------C--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-----CCEEEEecCCCcEEEEeCCCCe-
Q 013881 240 -------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLETLQ- 304 (434)
Q Consensus 240 -------~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~dg~i~vwd~~~~~- 304 (434)
+ .|++++.|+.|++||++...........+.+|...|.+++|+ +++|++++.||.|++||+++++
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 4 999999999999999988765555667888999999999997 4589999999999999998864
Q ss_pred --EEEE--EccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 305 --CIQT--LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 305 --~~~~--~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
.... ...|...|.+++|+ +++|++++.||.|++|++..........
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 295 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAG 295 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccccc
Confidence 2222 23488999999998 6799999999999999998665544433
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.4e-31 Score=251.87 Aligned_cols=256 Identities=12% Similarity=0.118 Sum_probs=208.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.....+.+|.+.|++|+|+| ++|++++.||+|++||+.+++....+ .
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------------------~ 53 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------------------------------D 53 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------------------------------G
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-------------------------------C
Confidence 45677889999999999998 89999999999999999887611000 0
Q ss_pred ceEEecCCCCcEEEEEEeC---------CEEEEEeCCCcEEEEEcCCCCCccc-cceeecCc-----cceEEEEEEC---
Q 013881 221 TDLSLSGPVGQVYAMAVGN---------DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGH-----SLAVVSLVVG--- 282 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~---------~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~h-----~~~v~~l~~~--- 282 (434)
....+..|...|.+++|++ .+|++++.|+.|++||+........ ....+..| ...|.++.|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 0123567899999999985 4799999999999999987632101 16677778 5899999987
Q ss_pred ---CCE-EEEecCCCcEEEEeCCC------CeEEE-----EE-------ccccccEEEEEEc--CCEEEEEeCCCcEEEE
Q 013881 283 ---ANK-LYSGSMDNSIRVWNLET------LQCIQ-----TL-------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338 (434)
Q Consensus 283 ---~~~-l~s~s~dg~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~~--~~~l~s~s~dg~i~vw 338 (434)
+++ |++++.||.|++||+++ ++.+. .+ ..|...|.+++|+ + +|++++.|+.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 467 99999999999999998 66666 77 4488999999998 5 99999999999999
Q ss_pred EcCCCCceEEEee---e-cCCccEEEEEeccCCCCCcEEEEEeCC---CeEEEEeCCCCccccccc--------------
Q 013881 339 FATDSGNLEVTYT---H-NEEHGVLALCGMPDSEGKPVLLCSCND---NSVRFYDLPSFAERGKIF-------------- 397 (434)
Q Consensus 339 d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~-------------- 397 (434)
|+++...+..+.. + .....+.+++|+|+.. +|++++.| +.|++||+.+++.+..+.
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~---~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS---LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTT---EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCC---EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 9998776666655 3 0035689999987654 89999999 999999999988777765
Q ss_pred ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 398 AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 398 ~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
|...|.+++|+|++ +|++++.||.|+|||+.+++.+
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 67889999999999 9999999999999999987653
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-30 Score=240.87 Aligned_cols=245 Identities=18% Similarity=0.270 Sum_probs=209.6
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------------------------- 69 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT--------------------------------- 69 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---------------------------------
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---------------------------------
Confidence 55667899999999999999999999999999999999999877654
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCC----
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD---- 292 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d---- 292 (434)
+..|...|.+++|+++ +|++++.||.|++||+.+. +....+. +...+.++.++ ++++++++.+
T Consensus 70 ----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 70 ----LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG----QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp ----ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC----CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred ----hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence 5678999999999987 9999999999999999887 4555555 78889999996 5689999988
Q ss_pred -CcEEEEeCCCCe-----------EEEEEccccc--cEEEEEEc--CCEEEEEeCCCcEEEEEcCC-CCceEEEeeecCC
Q 013881 293 -NSIRVWNLETLQ-----------CIQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEE 355 (434)
Q Consensus 293 -g~i~vwd~~~~~-----------~~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~ 355 (434)
+.|++||+.... .+..+..|.. .+.+++++ +++|++++.|+.|++||+++ ...+..+..+.
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 218 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE-- 218 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS--
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC--
Confidence 999999987653 3445556666 89999998 67999999999999999988 44444444443
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCC--------------
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTG-------------- 420 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg-------------- 420 (434)
..+.+++++|+.. +|++++.|+.|++||+.+++.+..+.+...+..++|+|++ ++++++.++
T Consensus 219 ~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 219 KSISDMQFSPDLT---YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp SCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred CceeEEEECCCCC---EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 4688999987654 8999999999999999999999888889999999999999 999999888
Q ss_pred CEEEEEccCCcc
Q 013881 421 QVRVWQWCNGPV 432 (434)
Q Consensus 421 ~i~iwd~~~g~~ 432 (434)
.+++||+.+++.
T Consensus 296 ~i~~~d~~~~~~ 307 (369)
T 3zwl_B 296 EARFYHKIFEEE 307 (369)
T ss_dssp EEEEEETTTCCE
T ss_pred eeEEEecCCCcc
Confidence 899999988764
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=264.73 Aligned_cols=266 Identities=11% Similarity=0.059 Sum_probs=202.0
Q ss_pred eEEEEecCccccEEEEEccCCC---------CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEE-EcCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGS---------DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTN 210 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~---------~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 210 (434)
+....+. +.+.|.+|+|+|++ ++||+++.++.. . ...++...+++ +.|+
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~------------~~~~~~~~laS~s~D~ 183 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E------------PLNEHLEMFDKEKHSS 183 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------CE
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C------------ccchhhhhhccCCCCc
Confidence 4444454 67899999999986 789998876531 0 00233334444 4588
Q ss_pred cEEEEECCCCce-----EEecCCCCcEEEEEEeCC--------EEEEEeCCCcEEEEEcCCCCCc-------cccceeec
Q 013881 211 FVKAWNTQTNTD-----LSLSGPVGQVYAMAVGND--------LLFAGTQDGAILAWKFNVTTNC-------FEPAASLK 270 (434)
Q Consensus 211 ~i~~w~~~~~~~-----~~~~~~~~~v~~l~~~~~--------~l~~g~~dg~i~vwd~~~~~~~-------~~~~~~~~ 270 (434)
.|++|++.+++. ..+..|.+.|.+++|+|+ +|++++.||+|++||+...... ..+...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999877653 235678899999999974 8999999999999999865321 12345678
Q ss_pred CccceEEEEEEC-CCEEEEecCCCcEEEEeCCCC-eEEEEEccccccEEEEE--Ec--C-CEEEEEeCCCcEEEEEcCCC
Q 013881 271 GHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLL--CW--D-QFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 271 ~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~--~~--~-~~l~s~s~dg~i~vwd~~~~ 343 (434)
+|...|.+++|+ ++.|++|+.||+|++||++++ .+...+.+|...|.+++ +. + .+|++++.|++|+|||+++.
T Consensus 264 ~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 264 LADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred cCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 899999999996 468999999999999999976 45567889999999994 44 4 68999999999999999887
Q ss_pred CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-cccCcEEEEEecCCc-EEEEeCCCCC
Q 013881 344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-FAKQEIRAIQLGPGG-LFFTGDGTGQ 421 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~spdg-~l~s~~~dg~ 421 (434)
..+..+..+.....+.+++|+|+.. .+++++.|++|++||++++..+..+ .|...|++|+|+|++ +|++|+.||+
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~---~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIY---SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTT---EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred CcccccccccccCcccceEeCCCcC---eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 7666665554433467888988655 7999999999999999998765544 478899999999999 9999999999
Q ss_pred EEEEEccCC
Q 013881 422 VRVWQWCNG 430 (434)
Q Consensus 422 i~iwd~~~g 430 (434)
|+|||+..+
T Consensus 421 v~lwd~~~~ 429 (524)
T 2j04_B 421 LIITNAARR 429 (524)
T ss_dssp EECCBSCSS
T ss_pred EEEEechHh
Confidence 999998654
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=244.40 Aligned_cols=258 Identities=12% Similarity=0.163 Sum_probs=208.3
Q ss_pred EEeCCCCceEEEEecCccccEEEEEccCC---CCEEEEEECCCcEEEEECCC-CceEEEEecCCceEEEEeCCCEEEEEc
Q 013881 133 SWTVGDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCMISEGPWIFIGV 208 (434)
Q Consensus 133 vwd~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (434)
.|+.... +.+..+.+|.+.|++|+|+|+ +++|++++.||.|+|||+.+ ++.+.
T Consensus 23 ~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~---------------------- 79 (368)
T 3mmy_A 23 TDNHNPM-KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP---------------------- 79 (368)
T ss_dssp CCSSCTT-CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE----------------------
T ss_pred cCCCCCc-ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE----------------------
Confidence 3444443 788889999999999999999 59999999999999999987 44331
Q ss_pred CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE--C--
Q 013881 209 TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--G-- 282 (434)
Q Consensus 209 ~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~-- 282 (434)
..+.+|...|.+++|+++ +|++++.||.|++||+... +. ..+..|...|.++.| +
T Consensus 80 --------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~-~~~~~~~~~v~~~~~~~~~~ 140 (368)
T 3mmy_A 80 --------------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN----QA-IQIAQHDAPVKTIHWIKAPN 140 (368)
T ss_dssp --------------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EE-EEEEECSSCEEEEEEEECSS
T ss_pred --------------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC----Cc-eeeccccCceEEEEEEeCCC
Confidence 135679999999999988 9999999999999999876 33 335679999999998 5
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEE
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 362 (434)
+++|++++.|+.|++||+++++++..+..+. .+.++.+.+..+++++.++.+++|+++...................+.
T Consensus 141 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (368)
T 3mmy_A 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVA 219 (368)
T ss_dssp CEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEE
T ss_pred CCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEE
Confidence 4579999999999999999999999987665 678888888999999999999999998776555544444444555555
Q ss_pred eccCCCC-CcEEEEEeCCCeEEEEeCCCCc---ccccccc-cC------------cEEEEEecCCc-EEEEeCCCCCEEE
Q 013881 363 GMPDSEG-KPVLLCSCNDNSVRFYDLPSFA---ERGKIFA-KQ------------EIRAIQLGPGG-LFFTGDGTGQVRV 424 (434)
Q Consensus 363 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~------------~v~~~~~spdg-~l~s~~~dg~i~i 424 (434)
+.+.... ...+++++.|+.|++||+.... ....+.. .. .|++++|+|++ +|++++.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 5554431 1249999999999999999873 3333332 22 69999999999 9999999999999
Q ss_pred EEccCCccc
Q 013881 425 WQWCNGPVA 433 (434)
Q Consensus 425 wd~~~g~~~ 433 (434)
||+.+++++
T Consensus 300 wd~~~~~~~ 308 (368)
T 3mmy_A 300 WDKDARTKL 308 (368)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999988653
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=3e-30 Score=246.11 Aligned_cols=244 Identities=19% Similarity=0.254 Sum_probs=207.3
Q ss_pred EEEecCcccc--EEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 143 LTQLEGHQKV--VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 143 ~~~l~~h~~~--V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+....+|... +.+++|+ +..+++++.|+.|++||+.+++....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~-------------------------------- 129 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA-------------------------------- 129 (401)
T ss_dssp EEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE--------------------------------
T ss_pred eeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee--------------------------------
Confidence 3344566655 4455665 466889999999999999998876543
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEE
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVW 298 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw 298 (434)
...|...|.+++|+++ +|++|+.||.|++||+.+. +.+..+.+|...|.++.|+++.|++++.||.|++|
T Consensus 130 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 130 ----ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ----TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp ----ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred ----ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEE
Confidence 2347889999999998 9999999999999999887 66788889999999999999999999999999999
Q ss_pred eCC-CCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 299 NLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 299 d~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
|++ ....+..+..|...|.+++|+ +++|++++.|+.|++||+++......+..+. ..+.+++|+|+.. .++++
T Consensus 202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~--~ll~~ 277 (401)
T 4aez_A 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQS--NLLAT 277 (401)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTST--TEEEE
T ss_pred ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCC--CEEEE
Confidence 999 577788999999999999998 6799999999999999999877666655544 4588899987644 47777
Q ss_pred Ee--CCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEE--eCCCCCEEEEEccCCcc
Q 013881 376 SC--NDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFT--GDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 376 ~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s--~~~dg~i~iwd~~~g~~ 432 (434)
++ .|+.|++||+.+++.+..+.+...|.+++|+|++ +|++ |+.||.|++|++.+++.
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 65 7999999999999999888888999999999999 8888 56899999999988653
No 98
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.2e-30 Score=249.37 Aligned_cols=257 Identities=18% Similarity=0.259 Sum_probs=203.4
Q ss_pred EEEecCccccEEEEEccCC-CCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 143 LTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
+....+|.+.|++++|+|+ +.+|++++.||.|++||+.+...... . +.....
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~-------------------------~~~~~~ 173 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--P-------------------------SGECQP 173 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--T-------------------------TCCCCC
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--c-------------------------cccCCC
Confidence 3455679999999999997 78999999999999999976311000 0 000011
Q ss_pred eEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc---cccceeecCccceEEEEEECC---CEEEEecCC
Q 013881 222 DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMD 292 (434)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d 292 (434)
...+.+|...|.+++|+++ +|++|+.||.|++|++...... ......+.+|...|.+++|++ .+|++++.|
T Consensus 174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 2246789999999999987 8999999999999999874321 223566778999999999964 589999999
Q ss_pred CcEEEEeCCCC---eEEEEEccccccEEEEEEc--CC-EEEEEeCCCcEEEEEcCCCC-ceEEEeeecCCccEEEEEecc
Q 013881 293 NSIRVWNLETL---QCIQTLTEHTSVVMSLLCW--DQ-FLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMP 365 (434)
Q Consensus 293 g~i~vwd~~~~---~~~~~~~~~~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (434)
+.|++||++++ +.+..+..|...|.+++|+ +. +|++++.|+.|++||+++.. .+..+..+. ..+.+++|+|
T Consensus 254 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp 331 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSP 331 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECS
T ss_pred CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECC
Confidence 99999999987 5788888999999999998 33 78999999999999999844 444554443 4699999988
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCC--------------cccccc-cccCcEEEEEecCCc--EEEEeCCCCCEEEEEcc
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSF--------------AERGKI-FAKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~-~~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~ 428 (434)
+.. .+|++++.|+.|+|||+... +.+..+ .|...|++++|+|++ +|++++.||.|+||++.
T Consensus 332 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNE--TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCT--TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCC--CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 653 48999999999999999872 222222 246789999999998 79999999999999987
Q ss_pred CC
Q 013881 429 NG 430 (434)
Q Consensus 429 ~g 430 (434)
++
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=4.6e-31 Score=254.99 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=192.4
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.|.+.|++++|+|++++||+|+.||.|+|||+.+++....... .... ....+.+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~ 79 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR-GEYN-------------------------VYSTFQS 79 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-CCEE-------------------------EEEEEEC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-ccee-------------------------Eeccccc
Confidence 3789999999999999999999999999999987752110000 0000 0113556
Q ss_pred CC------------CcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCcc----------------------------
Q 013881 228 PV------------GQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCF---------------------------- 263 (434)
Q Consensus 228 ~~------------~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~---------------------------- 263 (434)
|. ..|.+++|+++ .|++++.|+.|++||+.......
T Consensus 80 h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (447)
T 3dw8_B 80 HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRP 159 (447)
T ss_dssp CCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEE
T ss_pred ccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccc
Confidence 76 78999999986 79999999999999987632100
Q ss_pred -------cccee-ecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCC-CeEEE-------EEccccccEEEEEEc--C
Q 013881 264 -------EPAAS-LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQ-------TLTEHTSVVMSLLCW--D 323 (434)
Q Consensus 264 -------~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~l~~~--~ 323 (434)
.+... ..+|...|.+++|+ +++|+++ .|+.|++||+++ ++.+. .+..|...|.+++|+ +
T Consensus 160 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 160 MDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp EEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC
T ss_pred hheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC
Confidence 00112 36799999999996 5689988 799999999994 44544 256899999999998 4
Q ss_pred -CEEEEEeCCCcEEEEEcCCCCc----eEEEeeecCC----------ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 324 -QFLLSCSLDKTIKVWFATDSGN----LEVTYTHNEE----------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 324 -~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
++|++++.|+.|++||+++... ...+..+... ..+.+++|+|++. +|++++. +.|++||+.
T Consensus 239 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 239 CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---YMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---EEEEEES-SEEEEEETT
T ss_pred CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---EEEEeeC-CeEEEEeCC
Confidence 7999999999999999998775 4444444321 2689999988654 8999988 999999999
Q ss_pred C-CcccccccccCc----------------EEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 389 S-FAERGKIFAKQE----------------IRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 389 ~-~~~~~~~~~~~~----------------v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+ ++.+..+..+.. +..++|+|++ +|++|+.||.|+|||+.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 7 776666654332 3349999999 999999999999999998875
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=7.7e-30 Score=237.35 Aligned_cols=274 Identities=12% Similarity=0.109 Sum_probs=219.7
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCc--eEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~ 179 (434)
...|.+.|+|++|+++ .+++++.|+.|++|++.++. .....+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 3478899999999765 47888999999999998763 24555668999999999999999 9999999999999999
Q ss_pred -CCCceEEEEe--cCCceEEEEeC-CCEEEE-EcCCcEEEEECCC---------CceEEecCCCCcEEEEEEeCCEEEEE
Q 013881 180 -ASGQCAGVIN--LGGEVGCMISE-GPWIFI-GVTNFVKAWNTQT---------NTDLSLSGPVGQVYAMAVGNDLLFAG 245 (434)
Q Consensus 180 -~~~~~~~~~~--~~~~~~~~~~~-~~~l~~-~~~~~i~~w~~~~---------~~~~~~~~~~~~v~~l~~~~~~l~~g 245 (434)
.+++...... +...+.++.+. +.++++ +.++.|++||+.+ ++.+....|...|.+++|+++.++++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 166 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred ccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEE
Confidence 8887643333 45566666542 555555 5689999999987 55554444899999999999999999
Q ss_pred eCCCcEEEEEcCC-CCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCC------eEEEEEccccc-
Q 013881 246 TQDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL------QCIQTLTEHTS- 314 (434)
Q Consensus 246 ~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~~~- 314 (434)
+.|+.|++||++. ... ........|...+.++.+++ +++++++.||.|++|+++.. +.+..+..|..
T Consensus 167 ~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp ESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence 9999999999987 432 23344557888999999975 68999999999999999887 78888888865
Q ss_pred --------cEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe-EE
Q 013881 315 --------VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS-VR 383 (434)
Q Consensus 315 --------~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~ 383 (434)
.|.+++|+ +++|++++.||.|++||+.+.+.+..+..++ ...+.+++ +++. +|++++.||. .+
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~--~~~~---~l~s~s~Dg~~~~ 318 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIA--CSDN---ILCLATSDDTFKT 318 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEE--ECSS---EEEEEEECTHHHH
T ss_pred ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CCCceEec--CCCC---eEEEEecCCcccc
Confidence 99999997 6799999999999999999887666655441 34677777 4443 9999999998 55
Q ss_pred EEe
Q 013881 384 FYD 386 (434)
Q Consensus 384 iwd 386 (434)
.|.
T Consensus 319 ~~~ 321 (342)
T 1yfq_A 319 NAA 321 (342)
T ss_dssp CSS
T ss_pred ccc
Confidence 444
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=4.4e-30 Score=240.26 Aligned_cols=249 Identities=15% Similarity=0.225 Sum_probs=202.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEE-EEEC---CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEE
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLY-SGSK---DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~-s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~ 216 (434)
.....+++|...|++++|+|++..|+ +++. |+.|+|||+.+++.....
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~---------------------------- 60 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR---------------------------- 60 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------------------
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee----------------------------
Confidence 34455678999999999999996554 5655 999999999987754332
Q ss_pred CCCCceEEecCCCCcEEEEEEeC-----CEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEE--------CC
Q 013881 217 TQTNTDLSLSGPVGQVYAMAVGN-----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--------GA 283 (434)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~ 283 (434)
..+|...|.+++|++ .+|++|+.||.|++||+.... .....+.+|...|.++.+ ++
T Consensus 61 --------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 61 --------EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp --------EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CC
T ss_pred --------eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCc
Confidence 236788999999987 379999999999999998873 267788899999999965 35
Q ss_pred CEEEEecCCCcEEEEeCCCCe-EEEEEccccc----cEEEEEE------cCCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 284 NKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTS----VVMSLLC------WDQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~l~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
++|++++.|+.|++||+++++ .+..+..|.. .+.++.+ ++++|++++.|+.|++||+++..... ...
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~- 207 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETN- 207 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEE-
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecC-
Confidence 699999999999999999987 7888876655 7888884 37899999999999999998876532 222
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc------cccCcEEEEEecCCc--EEEEeCCCCCEEE
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI------FAKQEIRAIQLGPGG--LFFTGDGTGQVRV 424 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~spdg--~l~s~~~dg~i~i 424 (434)
....+.++++.|...++.+|++++.||.|++||+.+++....+ .|...|++++|+|++ +|++++.||.|++
T Consensus 208 -~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 208 -IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286 (357)
T ss_dssp -CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred -CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 3456999999884323348999999999999999988776655 468899999999998 6999999999999
Q ss_pred EEccCCc
Q 013881 425 WQWCNGP 431 (434)
Q Consensus 425 wd~~~g~ 431 (434)
||+.++.
T Consensus 287 wd~~~~~ 293 (357)
T 3i2n_A 287 WKYEYPI 293 (357)
T ss_dssp EEEECCS
T ss_pred eecCCCc
Confidence 9998653
No 102
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=4.3e-30 Score=241.80 Aligned_cols=239 Identities=14% Similarity=0.092 Sum_probs=198.8
Q ss_pred ecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc--eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 146 l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------------------------------------- 46 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH------------------------------------- 46 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-------------------------------------
Confidence 45699999999999999999999999999999998875 332
Q ss_pred EecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEe
Q 013881 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd 299 (434)
.+.+|...|.+++|+++ +|++++.|+.|++||+..... .....+..|...|.++.|+ +++|++++.|+.|++||
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 35678999999999988 999999999999999977621 2334456789999999996 56999999999999999
Q ss_pred CCCCeE---E-EEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC------------------CCCceEEEeeecCC
Q 013881 300 LETLQC---I-QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT------------------DSGNLEVTYTHNEE 355 (434)
Q Consensus 300 ~~~~~~---~-~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~ 355 (434)
++.++. . .....|...|.+++|+ +++|++++.|+.|++||++ ....+..+.. +.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 202 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SC 202 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CS
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC--CC
Confidence 988762 3 3336789999999998 6799999999999999964 3333333333 33
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..+.+++++|++. +|++++.|+.|++||+.+++.+..+. +...|.+++|+|++ +|+++ .|+.|++|++.+
T Consensus 203 ~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 203 GWVHGVCFSANGS---RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SCEEEEEECSSSS---EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CeEEEEEECCCCC---EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 5688999987655 89999999999999999988877766 46689999999999 77776 999999999988
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=265.19 Aligned_cols=251 Identities=16% Similarity=0.165 Sum_probs=201.1
Q ss_pred EEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 143 ~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+..+.... .
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~-----------------------------------~ 46 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-----------------------------------I 46 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE-----------------------------------E
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc-----------------------------------c
Confidence 45678999999999999999999999999999999987443211 1
Q ss_pred EEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC----CCEEEEecCCCc
Q 013881 223 LSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNS 294 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~ 294 (434)
..+.+|...|.+++|+++ .|++|+.||.|++||+..+.. .....+.+|...|.++.|+ ++.+++++.||.
T Consensus 47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 236789999999999743 999999999999999987621 3667788899999999996 558999999999
Q ss_pred EEEEeCCCC--eEEEEEccccccEEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCCceEEEe--eecCC
Q 013881 295 IRVWNLETL--QCIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNLEVTY--THNEE 355 (434)
Q Consensus 295 i~vwd~~~~--~~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~ 355 (434)
|++||++++ .....+..|...|.++.|++ .+|++++.||.|++||+++........ ...+.
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~ 204 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence 999999887 34566778999999999974 689999999999999998775432211 12234
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc------cccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
..+.+++|+|+...+.+|++++.||.|++||+.+++. .....+...|++++|+|++ +|++++.||.|++|++.
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 5799999988732245999999999999999998642 2222357889999999999 99999999999999998
Q ss_pred CC
Q 013881 429 NG 430 (434)
Q Consensus 429 ~g 430 (434)
++
T Consensus 285 ~~ 286 (753)
T 3jro_A 285 LE 286 (753)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 104
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-31 Score=250.79 Aligned_cols=242 Identities=15% Similarity=0.074 Sum_probs=189.7
Q ss_pred EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC--ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
.++.|.++|++++|+|++++|++++.|+.|+|||+.++ +.+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~------------------------------------ 49 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR------------------------------------ 49 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE------------------------------------
Confidence 34456789999999999999999999999999999876 3322
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEE
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 298 (434)
.+.+|...|.+++|+++ +|++++.|+.|++||+.... .......+..|...|.++.|+ +++|++++.|+.|++|
T Consensus 50 -~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 50 -TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp -CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred -EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 36689999999999997 89999999999999998863 123566778899999999996 5689999999999999
Q ss_pred eCCCCe---EEEEEcc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCC---------------ceEEEeeecCCcc
Q 013881 299 NLETLQ---CIQTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG---------------NLEVTYTHNEEHG 357 (434)
Q Consensus 299 d~~~~~---~~~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~ 357 (434)
|+++++ ....+.. |...|.+++|+ +++|++++.|+.|++||+.... .........+...
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSS
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCce
Confidence 999887 4778887 99999999998 6799999999999999986322 0111111144467
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc----ccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE----RGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+.+++|+|++. +|++++.|+.|++||+.+++. +..+. |...|.+++|+|++ +|++++.++.+ +|+..
T Consensus 208 v~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 208 VHAVGFSPSGN---ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEEECTTSS---CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEEEECCCCC---EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999988665 899999999999999999876 55544 57789999999999 88888766655 77665
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=5.4e-31 Score=254.04 Aligned_cols=252 Identities=17% Similarity=0.232 Sum_probs=189.3
Q ss_pred eEEEEecCccccEEEEEccC-CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
+......+|...|++|+|+| ++++||+|+.||+|+|||+.+++....+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------------------- 158 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------------------- 158 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-------------------------------
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-------------------------------
Confidence 34455677999999999999 5679999999999999999877644322
Q ss_pred CceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCc
Q 013881 220 NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 294 (434)
.+.+|.+.|.+++|+|. +|++|+.||+|++||++.... ........+...+.+++++ +.+|++|+.||.
T Consensus 159 ----~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 159 ----KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp ----CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred ----EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCc
Confidence 25689999999999863 999999999999999976421 2222223344556777774 679999999999
Q ss_pred EEEEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEe-eecCCccEEEEEeccCCCCC
Q 013881 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 295 i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (434)
|++||++. +.+..+.+|...|.+++|+ ..+|++++.|+.|+|||+++......+. ...+...+.+++|+|++.
T Consensus 233 i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-- 309 (435)
T 4e54_B 233 VILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-- 309 (435)
T ss_dssp EEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS--
T ss_pred EeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC--
Confidence 99999864 6677888999999999998 3478899999999999998766443332 223345789999987655
Q ss_pred cEEEEEeCCCeEEEEeCCCCcccccccc-------cCcEEEEEecCCc-EEEEe------------CCCCCEEEEEccCC
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIFA-------KQEIRAIQLGPGG-LFFTG------------DGTGQVRVWQWCNG 430 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~spdg-~l~s~------------~~dg~i~iwd~~~g 430 (434)
+|++++.|+.|+|||+.+++....+.. ...+....|+|++ .++++ ..++.|++||..+|
T Consensus 310 -~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 310 -RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG 388 (435)
T ss_dssp -EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred -eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence 999999999999999998765544321 1112233455554 44333 34568999999998
Q ss_pred ccc
Q 013881 431 PVA 433 (434)
Q Consensus 431 ~~~ 433 (434)
+++
T Consensus 389 ~~~ 391 (435)
T 4e54_B 389 KMM 391 (435)
T ss_dssp CEE
T ss_pred cEE
Confidence 753
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.6e-29 Score=233.25 Aligned_cols=278 Identities=12% Similarity=0.127 Sum_probs=210.2
Q ss_pred ccccccceEEEEEeCC-cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEE-EEEECCCcEEEEECCCC
Q 013881 105 RAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASG 182 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~ 182 (434)
...|..+|+|++|+++ .+++.+.+..+++|++.++ +.+..... ..+..+++.++++.+ ++++.|++|+|||+.++
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV-AHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTE-EEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCc-ceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 3668889999999765 4455455556899999876 55544432 357788888888877 56778899999999999
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC-ceE-EecCCCCcEEEEEEeCCEEEE--EeCCCcEEEEEcCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGNDLLFA--GTQDGAILAWKFNV 258 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~-~~~-~~~~~~~~v~~l~~~~~~l~~--g~~dg~i~vwd~~~ 258 (434)
+.+..+.....+.++......++++.++.|++||+.+. +.+ .+.. ....+++++..+++ |+.||.|++||+..
T Consensus 92 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 92 QDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp EEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC
T ss_pred cEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCC
Confidence 99999999899999988888888889999999999987 433 2222 44455666686655 68999999999987
Q ss_pred CCC-----------cccc-ceeecCccceEEEEEEC--CCEEEEecCCCc-EEEEeCCCCeEEEEEc-c-ccccEEEEEE
Q 013881 259 TTN-----------CFEP-AASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLT-E-HTSVVMSLLC 321 (434)
Q Consensus 259 ~~~-----------~~~~-~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~-~-~~~~v~~l~~ 321 (434)
... ...+ ...+.+|...|.+++|+ +++|++++.|++ |++||+++++++..+. + |...|.+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 530 0112 67889999999999996 568999999998 9999999999999998 5 9999999999
Q ss_pred c--CCEEEEEeCCCcEEEEEcCCCCceEEEe---------------------eecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 322 W--DQFLLSCSLDKTIKVWFATDSGNLEVTY---------------------THNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 322 ~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
+ +++|++++.|++|++||++......... ..........++|.+++. +|++++.
T Consensus 249 s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~---~l~~~~~ 325 (355)
T 3vu4_A 249 STDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS---LVVVWPH 325 (355)
T ss_dssp CTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---EEEEETT
T ss_pred CCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC---EEEEEeC
Confidence 8 6799999999999999997653211100 000011124466765544 8999999
Q ss_pred CCeEEEEeCCCCc
Q 013881 379 DNSVRFYDLPSFA 391 (434)
Q Consensus 379 dg~i~iwd~~~~~ 391 (434)
||.+++|++..++
T Consensus 326 dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 326 TRMIETFKVVFDD 338 (355)
T ss_dssp TTEEEEEEEEEET
T ss_pred CCeEEEEEEEcCC
Confidence 9999999987644
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-30 Score=237.97 Aligned_cols=266 Identities=14% Similarity=0.049 Sum_probs=207.3
Q ss_pred CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE
Q 013881 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198 (434)
Q Consensus 119 ~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 198 (434)
...+++|+.|+.|++||+.++ +.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------------- 104 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------------- 104 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------------
T ss_pred CCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------------
Confidence 345888999999999999988 6677766 578888999988 99999999999999764
Q ss_pred eCCCEEEEEcCCcEEEEECCCCceE--EecCCCCcEEEEEEeC--C--EEEEEeCCCcEEEEEcCCCCCccccceee-cC
Q 013881 199 SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KG 271 (434)
Q Consensus 199 ~~~~~l~~~~~~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~~--~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~ 271 (434)
.+.+|+..+++.+ ....|...|.+++|+| + ++++++.||.|++||++.+ +..... ..
T Consensus 105 ------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~ 168 (343)
T 3lrv_A 105 ------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----SQYIVHSAK 168 (343)
T ss_dssp ------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS----CEEEEECCC
T ss_pred ------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC----cEEEEEecC
Confidence 3446777777644 2346778999999999 5 8999999999999999987 333333 34
Q ss_pred ccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEE-EEEcc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 013881 272 HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCI-QTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 272 h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 345 (434)
|...+.+++|+ +.+|++|+.||.|++||+++++.+ ..+.. |...|.+++|+ +.+|++++ |+.|++||+++...
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 55578899886 568999999999999999999988 88888 99999999998 67899999 55999999998876
Q ss_pred eEEEeeec---CCccEEEEEeccCCCCCcEEEEEeC-CCeEEEEeCCCCcccccccccCcEEEEEecC---Cc-EEEEeC
Q 013881 346 LEVTYTHN---EEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLPSFAERGKIFAKQEIRAIQLGP---GG-LFFTGD 417 (434)
Q Consensus 346 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp---dg-~l~s~~ 417 (434)
+..+.... ......+++|.|++. +|++++. |+.|++|++.+....... .++..+.|++ +. .|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~---~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGK---NMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSS---EEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEE
T ss_pred ceeecccccccccccceEEEECCCCC---EEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEe
Confidence 54433211 111113577876654 8999888 999999999765443332 6678888998 77 899999
Q ss_pred CCCCEEEEEccCC
Q 013881 418 GTGQVRVWQWCNG 430 (434)
Q Consensus 418 ~dg~i~iwd~~~g 430 (434)
.||.+.++-....
T Consensus 322 ~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 322 GDGGIAAILKTND 334 (343)
T ss_dssp ETTEEEEEEECSS
T ss_pred cCCceEEEEecCC
Confidence 9999998865543
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.2e-27 Score=224.05 Aligned_cols=298 Identities=12% Similarity=0.101 Sum_probs=229.5
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEE-EEEECCCcEEEEECCCCceEEEEecCCceEEEEe-
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS- 199 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~- 199 (434)
+++++.|+.|++||+.++ +++..+.+|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+..+..+.++..
T Consensus 5 ~vs~~~d~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSN-KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEETTTTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCC-eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 567889999999999998 8888888775 58999999999987 6777999999999999999999998888777754
Q ss_pred -CCCEEEE-Ec-CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCCCCccccceeecCcc
Q 013881 200 -EGPWIFI-GV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHS 273 (434)
Q Consensus 200 -~~~~l~~-~~-~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~ 273 (434)
++..+++ +. ++.|++||+.+++......+...+.+++|+++ .| ++++.++.|++||+.++ +....+..+.
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~ 158 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVSVGR 158 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECCS
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEecCC
Confidence 5676654 43 58999999999988765556678999999988 44 78888999999999876 4555555543
Q ss_pred ceEEEEEEC--CCEE-EEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe---CCCcEEEEEcCCCCc
Q 013881 274 LAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKTIKVWFATDSGN 345 (434)
Q Consensus 274 ~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~i~vwd~~~~~~ 345 (434)
.+..+.++ ++++ ++++.++.|++||+++++.+..+. +...+.+++++ +++|++++ .++.|++||+.+.+.
T Consensus 159 -~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 -SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred -CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 45778886 4565 678889999999999999888775 45678888888 66888887 689999999988766
Q ss_pred eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEE----EEEecC------------
Q 013881 346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIR----AIQLGP------------ 409 (434)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~----~~~~sp------------ 409 (434)
+..+..+ ..+..++++|++. .++++++.|+.|++||+.+++.+..+....... .+.+.|
T Consensus 237 ~~~~~~~---~~~~~~~~s~dg~--~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~ 311 (391)
T 1l0q_A 237 TARIPVG---PDPAGIAVTPDGK--KVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKS 311 (391)
T ss_dssp EEEEECC---SSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEE
T ss_pred EEEEecC---CCccEEEEccCCC--EEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccc
Confidence 5555443 3467788876644 344677889999999999988776654211111 012221
Q ss_pred ----------Cc-EEEEeCCCCCEEEEEccCCcc
Q 013881 410 ----------GG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 410 ----------dg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
+. .+...+.|..+++|++.+|..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 312 NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11 366667789999999988753
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.4e-28 Score=231.41 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=194.0
Q ss_pred cccccceEEEEEeCCcEEEe-----------cCCCeEEEEeCCCCceEEE---Eec-----CccccEEEEEccCCCCEEE
Q 013881 106 AVIKTDILCRNWVQGNCMYG-----------EKCKFLHSWTVGDGFKLLT---QLE-----GHQKVVSGITLPSGSDKLY 166 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~~~~g-----------~~d~~i~vwd~~~~~~~~~---~l~-----~h~~~V~~l~~s~~~~~l~ 166 (434)
..|...+.|+++..+.+++| +.|+.|++|++.+....+. ... .+...+.+++|||||++|+
T Consensus 70 ~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 70 EDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp CTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred cCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 34566788888877766654 4678899999875423222 222 3456799999999999987
Q ss_pred EEE--CCCcEEEEECCCCceEEEEecCCceEEEEe--CCCEEEEEcCCcEEEEECCCCceE---EecCCCCcEEEEEEeC
Q 013881 167 SGS--KDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGN 239 (434)
Q Consensus 167 s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~---~~~~~~~~v~~l~~~~ 239 (434)
+++ .|++|+|||+++++++..+.....+.++.+ ++.+++++.++.+.+|+..++... ....|...|.+++|+|
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 554 689999999999999999998888877754 788999999999999998887765 3456889999999999
Q ss_pred C--EEEEEeCCC----cEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEE-c
Q 013881 240 D--LLFAGTQDG----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTL-T 310 (434)
Q Consensus 240 ~--~l~~g~~dg----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-~ 310 (434)
+ .+++++.|+ .+++|++............+.+|...|++++|+ +++|++|+.|++|+|||+++++++..+ .
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence 8 888888877 688898876643333456678899999999996 569999999999999999999999885 7
Q ss_pred cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 013881 311 EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 311 ~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 343 (434)
+|...|++++|+ +++|++++.|++|+|||+...
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 899999999998 679999999999999999644
No 110
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.5e-28 Score=231.36 Aligned_cols=246 Identities=21% Similarity=0.317 Sum_probs=203.9
Q ss_pred cccccceEEEEEeCC--cEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc
Q 013881 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (434)
..|...|+|++|+++ .+++|+.|+.|++||+.++ +.+..+.+|...|.+++++ +.+|++|+.|+.+++||.....
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 456778999999765 4778999999999999998 9999999999999998874 6799999999999999987654
Q ss_pred eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC
Q 013881 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~ 261 (434)
... ..+.+|...+..+.+.++ .+++++.|+.|++|+......
T Consensus 221 ~~~------------------------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 221 HHV------------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp CEE------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred eee------------------------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 321 236789999999999988 999999999999999988765
Q ss_pred ccccceeecCccceEEEEEECC---CEEEE--ecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe--CC
Q 013881 262 CFEPAASLKGHSLAVVSLVVGA---NKLYS--GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS--LD 332 (434)
Q Consensus 262 ~~~~~~~~~~h~~~v~~l~~~~---~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s--~d 332 (434)
....+.....|...|.++++.+ +.+++ |+.|++|++||+.+++++..+..|. .+.++.+. ++.+++++ .|
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTT
T ss_pred cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCC
Confidence 5556777888999999999964 45554 5689999999999999999887664 56667676 66777665 69
Q ss_pred CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI 396 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 396 (434)
+.|+|||+.+...+..+..|. ..|.+++|+|++. +|++|+.|++|+|||+....+....
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~---~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGA---TVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSS---CEEEEETTTEEEEECCSCSSCC---
T ss_pred CEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCC---EEEEEecCCeEEEEECCCCCccchh
Confidence 999999999998888777665 4699999988765 8999999999999999876555443
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3e-29 Score=238.44 Aligned_cols=237 Identities=12% Similarity=0.065 Sum_probs=168.2
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEE
Q 013881 154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233 (434)
Q Consensus 154 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~ 233 (434)
....+++++.+|++++.|++|+|||+.+++...... ...+.+|.+.|.
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~--------------------------------~~~~~gH~~~v~ 140 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV--------------------------------LGGKSGHHNFVN 140 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE--------------------------------ECTTTSCSSCEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee--------------------------------ecccCCCCCceE
Confidence 333444566789999999999999988876543211 013678999999
Q ss_pred EEEEeC--------C--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeC
Q 013881 234 AMAVGN--------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 234 ~l~~~~--------~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~ 300 (434)
+++|+| + +|++|+.|++|++||+... .+...+..|...|.+++|++ .+|++++.|++|++||+
T Consensus 141 ~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 141 DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred EEEEccccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 999986 3 8999999999999999876 56677778999999999975 37999999999999999
Q ss_pred CCCeEEEEE-------------------------ccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 301 ETLQCIQTL-------------------------TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 301 ~~~~~~~~~-------------------------~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
++++..... .+|...+.++.|. ++.|++++.|+++++||+........+..+
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~ 296 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS 296 (393)
T ss_dssp TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee
Confidence 987654332 3566778888876 679999999999999999876554443332
Q ss_pred cCC----------------ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-cccCcEEEEEecCCc-EEE
Q 013881 353 NEE----------------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-FAKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 353 ~~~----------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~spdg-~l~ 414 (434)
... .......+.+ ..++.++++|+.||.|++||+.+++..... .+...|.+++|+||| +||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 297 TMKLGPKNLLPNVQGISLFPSLLGACPHP-RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp -------CCSCSEEEECSSCCSSCCEECS-SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCccccEEEccccccccccCcceeEEEcc-CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 211 0111122222 224457788889999999999998776654 467899999999999 999
Q ss_pred EeCCCCCEEEEEcc
Q 013881 415 TGDGTGQVRVWQWC 428 (434)
Q Consensus 415 s~~~dg~i~iwd~~ 428 (434)
+++.+| +.+|++.
T Consensus 376 ~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 376 IATEGS-VLLTRLM 388 (393)
T ss_dssp EEESSE-EEEEEEG
T ss_pred EEeCCC-eEEEEEe
Confidence 998777 6666653
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.1e-28 Score=222.04 Aligned_cols=240 Identities=20% Similarity=0.247 Sum_probs=201.6
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcE
Q 013881 153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232 (434)
Q Consensus 153 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v 232 (434)
.++|+||+++ +|++| .|++|+|||+.++++++.+. +.+|...|
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~-----------------------------------~~~~~~~V 70 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ-----------------------------------MEQPGEYI 70 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-----------------------------------CCSTTCCE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-----------------------------------ecCCCCeE
Confidence 5779999886 66665 59999999999999887643 56788899
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC-eEEEEE
Q 013881 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-QCIQTL 309 (434)
Q Consensus 233 ~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~ 309 (434)
.+++|+++ +|++|+.||+|++||++++ +.+..+.+|...+.++.+.+..+++++.++.+++|+.... ..+..+
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCc----eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 99999998 9999999999999999987 7788899999999999999999999999999999998875 566788
Q ss_pred ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceE--EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 310 TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 310 ~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
.+|...+..+.+. +++|++++.|+.|++||+++.+... ..........+..+.+.+.......+++++.++.|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 8999999999988 7899999999999999998765322 22223334568888888876654345567789999999
Q ss_pred eCCCCcccccccccCcEEEEEecCCc-EEEE--eCCCCCEEEEEccCCccc
Q 013881 386 DLPSFAERGKIFAKQEIRAIQLGPGG-LFFT--GDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 386 d~~~~~~~~~~~~~~~v~~~~~spdg-~l~s--~~~dg~i~iwd~~~g~~~ 433 (434)
|...........+...+..+.|+|++ .+++ |+.|+.|+|||+.+++.+
T Consensus 227 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 99998888888888999999999998 6554 458999999999988754
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.1e-28 Score=220.94 Aligned_cols=273 Identities=13% Similarity=0.098 Sum_probs=180.9
Q ss_pred ceEEEEE-eCCc---EEEecCCCeEEEEeCCCCc--eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 111 DILCRNW-VQGN---CMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 111 ~i~c~~~-~~~~---~~~g~~d~~i~vwd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
.+.++.| ..+. |+.......|++|+..++. ++++++++|+.+|..|.+.||..-|+...-. +++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~--- 111 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------NLEI--- 111 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------SSSE---
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------cccc---
Confidence 5677778 3333 7777788999999999863 8999999999999999999976544432211 1111
Q ss_pred EEEEecCCceEEEE--eC----CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEe---CCCcEEEEE
Q 013881 185 AGVINLGGEVGCMI--SE----GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT---QDGAILAWK 255 (434)
Q Consensus 185 ~~~~~~~~~~~~~~--~~----~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~---~dg~i~vwd 255 (434)
..+..+. ++ +.+++.+. ..+.+|++.++ .++..+ .|+.|++|+
T Consensus 112 -------~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~~g--------------------~lv~ss~~g~d~~V~~~~ 163 (356)
T 2w18_A 112 -------REIRALFCSSDDESEKQVLLKSG-NIKAVLGLTKR--------------------RLVSSSGTLSDQQVEVMT 163 (356)
T ss_dssp -------EEEEEECC------CCEEEEEEE-EEEEEEEETTT--------------------EEEEEESSSTTCEEEEEE
T ss_pred -------cceEEEEECCCccccccEEEeCC-CeEEEEecCCC--------------------cEEEecccCCCCcEEEEE
Confidence 0122221 22 23333322 33555544322 333333 488999999
Q ss_pred cCCCCCccccceeecCccceEEE--EEE---CCCEEEEecCCCcEEEEeCCCCeEEEEEccccc---cEEEEEEc--CCE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVS--LVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---VVMSLLCW--DQF 325 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~--l~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~~--~~~ 325 (434)
+.... +.+..+.+|...+.. +++ ++..|++++.|++|+|||++++++++++.+|.. .+.+++|+ +.+
T Consensus 164 ~s~dG---~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 164 FAEDG---GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp ECTTS---CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred ECCCC---ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 85532 445555566665554 444 347999999999999999999999999987543 45655666 444
Q ss_pred E------------EEEeCCCcEEEEEcCCCCceEEEee---ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 326 L------------LSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 326 l------------~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
+ ++|+.|++|++||..++..+..+.. ..+.....+..+. +.++++++.|++|+|||+.++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-----g~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-----DHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-----TTEEEEEETTSCEEEEETTTC
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-----CCEEEEEcCCCcEEEEECCCC
Confidence 4 6788999999999988766544321 1111123332221 237999999999999999999
Q ss_pred ccccccc-ccCcE-EEEEecCCc-EEEEeCCCCCEEEEEcc
Q 013881 391 AERGKIF-AKQEI-RAIQLGPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 391 ~~~~~~~-~~~~v-~~~~~spdg-~l~s~~~dg~i~iwd~~ 428 (434)
+.+..+. |...+ ..++|+||| +|++|+.|++|+|||+.
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 9999886 44444 468999999 99999999999999963
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.5e-27 Score=229.53 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=214.2
Q ss_pred cceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEE-----EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 013881 110 TDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLT-----QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~-----~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (434)
..+.++.|+++. +++++.++.|++||+.++ +.+. .+.+|...|.+++|+++++++++++.|+.|++||+.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 345688897654 344557889999999988 6666 45689999999999999999999999999999999988
Q ss_pred ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCC
Q 013881 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVT 259 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~ 259 (434)
+.+.. +..|...+.+++|+++ .+ ++++.|+.|++||+.++
T Consensus 202 ~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 202 AYKAT-------------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp CEEEE-------------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEEE-------------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 77654 3457778999999988 45 56668999999999876
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEEEec--------CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CC-EE
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS--------MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ-FL 326 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~-~l 326 (434)
+....+..+ ..+.+++++ ++++++++ .|+.|++||+++++.+..+ .|...+..++++ ++ .+
T Consensus 245 ----~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 245 ----LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp ----EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred ----cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 445555443 458888886 55788777 5899999999999887766 456688889998 44 45
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC---------------CCeEEEEeCCCCc
Q 013881 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---------------DNSVRFYDLPSFA 391 (434)
Q Consensus 327 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~ 391 (434)
++++.|+.|++||+.+.+....+. ....+..++++|++. ++++++. ||.|++||+.+++
T Consensus 319 ~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 319 VSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGK---YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSS---EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCC---EEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 666899999999998765554443 234577888887654 6777765 5799999999999
Q ss_pred ccccccccCcEEEEEecCCc-EEEEeC-CCCCEEEEEccC
Q 013881 392 ERGKIFAKQEIRAIQLGPGG-LFFTGD-GTGQVRVWQWCN 429 (434)
Q Consensus 392 ~~~~~~~~~~v~~~~~spdg-~l~s~~-~dg~i~iwd~~~ 429 (434)
.+..+.....+.+++|+|+| +|++++ .|+.|++|++..
T Consensus 393 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 VKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88888878889999999999 777665 599999999863
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=252.88 Aligned_cols=245 Identities=19% Similarity=0.202 Sum_probs=201.6
Q ss_pred ccccccceEEEEEeCC--cEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccCC--CCEEEEEECCCcEEEEEC
Q 013881 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDC 179 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~ 179 (434)
...|.++|+|++|+++ .+++|+.||.|++||+.++ .+.+..+.+|.+.|++++|+++ +++|++++.||+|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 4578899999999754 4888999999999999732 3778899999999999999988 999999999999999999
Q ss_pred CCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEE
Q 013881 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWK 255 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~vwd 255 (434)
.+++.... ..+..|...|.+++|+|+ .+++|+.||.|++||
T Consensus 85 ~~~~~~~~-----------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd 129 (753)
T 3jro_A 85 ENGRWSQI-----------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129 (753)
T ss_dssp ETTEEEEE-----------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred CCCccccc-----------------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence 88753221 136679999999999975 899999999999999
Q ss_pred cCCCCCccccceeecCccceEEEEEECC---------------CEEEEecCCCcEEEEeCCCC----eEEEEEccccccE
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDNSIRVWNLETL----QCIQTLTEHTSVV 316 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~v 316 (434)
+..... .....+.+|...|.++.+++ ++|++++.||.|++||++++ ..+..+.+|...|
T Consensus 130 l~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 130 FKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp CCSSSC--CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred eecCCC--cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 987643 34556778999999999965 57999999999999999876 6678888999999
Q ss_pred EEEEEc-----CCEEEEEeCCCcEEEEEcCCCCceE---EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 317 MSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLE---VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 317 ~~l~~~-----~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
.+++|+ +++|++++.||.|++||+.+..... ..........+.+++|+|++. +|++++.||.|++|++.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC---CEEEECSSSCEECCBCC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC---EEEEEcCCCEEEEEecC
Confidence 999998 3589999999999999998764221 111222345688888887655 89999999999999998
Q ss_pred C
Q 013881 389 S 389 (434)
Q Consensus 389 ~ 389 (434)
+
T Consensus 285 ~ 285 (753)
T 3jro_A 285 L 285 (753)
T ss_dssp S
T ss_pred C
Confidence 5
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-29 Score=243.25 Aligned_cols=274 Identities=11% Similarity=0.044 Sum_probs=211.8
Q ss_pred cccccceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
..|...|.+++|+++. .++.+.+|+.+.. ..+. .|...|.+++|||+|++||+++.||+|+|||.+. +
T Consensus 49 ~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~----~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~ 117 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE-----FENKLDFELAQQN----GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M 117 (588)
T ss_dssp SSBGGGTEEEEEECCC-----CCCTTTTSCCCSS----CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E
T ss_pred cCCCccEEEEEECCCC-----CcceEEEEeCCCc----eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e
Confidence 4688999999998876 4444445543322 2233 5689999999999999999999999999999654 6
Q ss_pred EEEEecCC------ceEEEE--eCCCEEEEEc-CCcEEEEECCCCce--------EEe----cCCCCcEEEEEEeCCEEE
Q 013881 185 AGVINLGG------EVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTD--------LSL----SGPVGQVYAMAVGNDLLF 243 (434)
Q Consensus 185 ~~~~~~~~------~~~~~~--~~~~~l~~~~-~~~i~~w~~~~~~~--------~~~----~~~~~~v~~l~~~~~~l~ 243 (434)
+..+. +. .+.++. +++++|+++. |+.|++|++.++.. ..+ .+|...|.+++|+|+-++
T Consensus 118 l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLa 196 (588)
T 2j04_A 118 LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLV 196 (588)
T ss_dssp EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEE
T ss_pred eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEE
Confidence 66655 33 366665 5888888765 89999999999853 344 678899999999999888
Q ss_pred EEeCCCcEEEEEcCCCCCccccceee-cCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEE-
Q 013881 244 AGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC- 321 (434)
Q Consensus 244 ~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~- 321 (434)
+++.|++|++||+...... .....+ .+|...|.+++|+++.|++++ +++|++||+.+++......+|...|..+.+
T Consensus 197 ass~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~ 274 (588)
T 2j04_A 197 AALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLN 274 (588)
T ss_dssp EEETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEET
T ss_pred EEeCCCeEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEee
Confidence 9999999999999876310 122445 478899999999878899887 699999999998885545489999999999
Q ss_pred -c--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc
Q 013881 322 -W--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 322 -~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 398 (434)
+ +..|+++++||+ ++|... .+.+.|+.. ++++ .|+++++|+..... ...+.+
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~---l~a~--~d~~v~lW~~~g~~-l~~~~~ 329 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLED------------------ELHVTADNI---IAPY--LEKKFKKWSTIWNE-FNNYET 329 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCS---SHHH--HHHHHHHTTTTTTS-SSSSCC
T ss_pred eCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCce---EEEE--cCCEEEEEECCCCc-eeeecc
Confidence 6 447999999999 999876 133555443 4443 49999999986544 446666
Q ss_pred cCcEEEEEecCCc-EEEEeCC
Q 013881 399 KQEIRAIQLGPGG-LFFTGDG 418 (434)
Q Consensus 399 ~~~v~~~~~spdg-~l~s~~~ 418 (434)
...|.+++||||| .+|+++.
T Consensus 330 ~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 330 TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEe
Confidence 6679999999999 8888763
No 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6.7e-28 Score=229.88 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=194.1
Q ss_pred EEEEccCCCCEE-EEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcE
Q 013881 154 SGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232 (434)
Q Consensus 154 ~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v 232 (434)
..++++|+...+ ++++.||.|+||++....... .....+.+|...|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------------------------~~~~~~~~h~~~V 84 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------------------------KNVPLVCGHTAPV 84 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------------------------TTCCCBCCCSSCE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------------------------CCCceEecCCCCE
Confidence 347788776544 457889999999986543210 0111367899999
Q ss_pred EEEEEeC-C--EEEEEeCCCcEEEEEcCCCCCc---cccceeecCccceEEEEEECC---CEEEEecCCCcEEEEeCCCC
Q 013881 233 YAMAVGN-D--LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 233 ~~l~~~~-~--~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~ 303 (434)
.+++|++ + +|++|+.||.|++||+...... .++...+.+|...|.+++|++ ++|++++.|+.|++||++++
T Consensus 85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164 (402)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999998 5 9999999999999999876321 145677889999999999974 48999999999999999999
Q ss_pred eEEEEE--ccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE---
Q 013881 304 QCIQTL--TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS--- 376 (434)
Q Consensus 304 ~~~~~~--~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 376 (434)
+.+..+ ..|...|.+++|+ +++|++++.|+.|++||+++...+..+........+..+.|++++ .+|++|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~~ 241 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG---KILTTGFSR 241 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT---EEEEEEECT
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC---cEEEEeccC
Confidence 999999 8899999999997 779999999999999999988766665333333346778887654 388888
Q ss_pred eCCCeEEEEeCCCCcc---cccccccCcEEEEEecCCc-EEE-EeCCCCCEEEEEccCCc
Q 013881 377 CNDNSVRFYDLPSFAE---RGKIFAKQEIRAIQLGPGG-LFF-TGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 377 ~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~spdg-~l~-s~~~dg~i~iwd~~~g~ 431 (434)
+.|+.|++||+.+++. ...+.+...+.+++|+|++ +|+ +++.||.|++||+.+++
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 7899999999998765 2233467789999999999 664 67789999999999886
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.9e-28 Score=230.79 Aligned_cols=252 Identities=17% Similarity=0.279 Sum_probs=203.2
Q ss_pred ccccccceEEEEEeCC---cEEEecCCCeEEEEeCCCC---------ceEEEEecCccccEEEEEccCCCC-EEEEEECC
Q 013881 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKD 171 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~d~~i~vwd~~~~---------~~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~d 171 (434)
...|...|++++|+++ .+++++.+|.|++|++.+. .+.+..+.+|...|++|+|+|++. +|++++.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 4678889999999875 4677889999999999861 377888999999999999999988 99999999
Q ss_pred CcEEEEECCCCceEE-EEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeC
Q 013881 172 ETVRVWDCASGQCAG-VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ 247 (434)
Q Consensus 172 g~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~ 247 (434)
|+|++||+.++.... .+. ....+..|...|.+++|+++ +|++++.
T Consensus 204 g~i~vwd~~~~~~~~~~~~-------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVID-------------------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp SCEEEEETTSCCBGGGEEE-------------------------------CSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred CeEEEEeCCCCCCCCceec-------------------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 999999998743210 000 01235689999999999983 9999999
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceEEEEEECC--C-EEEEecCCCcEEEEeCCC-CeEEEEEccccccEEEEEEc-
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--N-KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~- 322 (434)
|+.|++||++.... ......+..|...|.+++|++ . .|++|+.||.|++||+++ .+++..+..|...|.++.|+
T Consensus 253 dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 253 DQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 99999999997631 145666778999999999974 3 689999999999999998 67789999999999999998
Q ss_pred -C-CEEEEEeCCCcEEEEEcCCCCc-----------eEEEeee-cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 323 -D-QFLLSCSLDKTIKVWFATDSGN-----------LEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 323 -~-~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
+ .+|++++.|+.|+|||+..... ...+..+ .+...+..++|+|+.+ .+|++++.||.|+||++.
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--WIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--TEEEEEETTSEEEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--CEEEEEECCCCEEEeEcc
Confidence 3 4699999999999999987321 1122222 2335689999987644 389999999999999997
Q ss_pred CC
Q 013881 389 SF 390 (434)
Q Consensus 389 ~~ 390 (434)
..
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=234.18 Aligned_cols=255 Identities=10% Similarity=0.062 Sum_probs=195.0
Q ss_pred ccccceEEEEEeCCc--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
+....|.+++|++++ +++++.|++|+ |...+ +.+++|...|.+++|+|+| .++++.+|+.+..+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE
Confidence 344577888887764 56677888888 64444 3447888888888888887 445444444332211
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCc
Q 013881 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262 (434)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~ 262 (434)
. ...|...|.+++|+|+ .|++++.||.|++||...
T Consensus 80 --------------------------------------~-~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---- 116 (588)
T 2j04_A 80 --------------------------------------L-NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---- 116 (588)
T ss_dssp --------------------------------------S-TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----
T ss_pred --------------------------------------e-ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----
Confidence 1 1245789999999999 899999999999999532
Q ss_pred cccceeecCccc-----eEEEEEEC--CCEEEEecCCCcEEEEeCCCCe-------EEEEE----ccccccEEEEEEcCC
Q 013881 263 FEPAASLKGHSL-----AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ-------CIQTL----TEHTSVVMSLLCWDQ 324 (434)
Q Consensus 263 ~~~~~~~~~h~~-----~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~-------~~~~~----~~~~~~v~~l~~~~~ 324 (434)
.+..+. |.. .+.+++|+ +++|++|+.||+|++||+.+++ .+.++ .+|...|.+++|+++
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 344455 554 48999986 5699999999999999999875 36776 677889999999954
Q ss_pred EEEEEeCCCcEEEEEcCCCCce---EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-cccccccC
Q 013881 325 FLLSCSLDKTIKVWFATDSGNL---EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE-RGKIFAKQ 400 (434)
Q Consensus 325 ~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~ 400 (434)
-+++++.|+.|++||+...... ..+.. .+...|.+++|+ + ..|++++ +++|++||+.+++. .....|.+
T Consensus 194 gLaass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFs--g---~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 194 VLVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIV--D---YKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp EEEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEE--T---TEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred cEEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEE--C---CEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 4999999999999999877642 22322 233568888887 2 3788887 69999999998887 55557889
Q ss_pred cEEEEEe--cCCc-EEEEeCCCCCEEEEEcc
Q 013881 401 EIRAIQL--GPGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 401 ~v~~~~~--spdg-~l~s~~~dg~i~iwd~~ 428 (434)
.|..++| +||+ .|+++++||+ ++|.+.
T Consensus 267 ~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999999 9999 9999999999 999974
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-25 Score=213.23 Aligned_cols=259 Identities=15% Similarity=0.131 Sum_probs=206.3
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe--CCCEEE-EE-cCCcEEEEECCCCceEEecCCCCcEEEEEEe
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIF-IG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG 238 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~-~~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~ 238 (434)
.++++++.|+.|++||+.+++.+..+..+..+.++.+ ++..++ ++ .++.|++||+.+++......+...+.+++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 4678899999999999999999999998887777654 666664 44 5899999999999887555555599999999
Q ss_pred CC--EE-EEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEE-EEecCCCcEEEEeCCCCeEEEEEccc
Q 013881 239 ND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEH 312 (434)
Q Consensus 239 ~~--~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~ 312 (434)
++ .| +++..++.|++||+.++ +....+..+ ..+.+++++ ++++ ++++.|+.|++||+.+++.+..+..+
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~----~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSN----TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTT----EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEECCCCEEEEEECCCC----eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 88 45 56667899999999887 445555544 457888886 4555 78888999999999999999888766
Q ss_pred cccEEEEEEc--CCEE-EEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe---CCCeEEEEe
Q 013881 313 TSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFYD 386 (434)
Q Consensus 313 ~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd 386 (434)
. .+.++.++ +++| ++++.++.|++||+++......+.. ...+..+++++++. +|++++ .++.|++||
T Consensus 158 ~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~---~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 158 R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT---KAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSS---EEEEEEECSSCCEEEEEE
T ss_pred C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCC---EEEEEecCcCCCcEEEEE
Confidence 4 45888887 5566 6777899999999988765544332 34577888877654 677776 689999999
Q ss_pred CCCCcccccccccCcEEEEEecCCc-EE-EEeCCCCCEEEEEccCCccc
Q 013881 387 LPSFAERGKIFAKQEIRAIQLGPGG-LF-FTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~spdg-~l-~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.+++.+..+.....+.+++|+|++ +| ++++.|+.|++||+.+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 231 TGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 9999888887777789999999999 66 67789999999999988753
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.5e-25 Score=220.91 Aligned_cols=302 Identities=12% Similarity=0.083 Sum_probs=227.7
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEEC--CCCceEEEEecCCceEEEE-
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC--ASGQCAGVINLGGEVGCMI- 198 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~- 198 (434)
+++++.|++|.+||..++ +++.++..+.. +..++|+||+++|++++.|++|++||+ .+++++.++..+..+..+.
T Consensus 152 ~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~ 229 (543)
T 1nir_A 152 SVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 229 (543)
T ss_dssp EEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEe
Confidence 455668899999999998 88888884333 899999999999999999999999999 8999999998777666554
Q ss_pred -e----CCCEEEEEc--CCcEEEEECCCCceEE-ecC----------C-CCcEEEEEEeCC---EEEEEeCCCcEEEEEc
Q 013881 199 -S----EGPWIFIGV--TNFVKAWNTQTNTDLS-LSG----------P-VGQVYAMAVGND---LLFAGTQDGAILAWKF 256 (434)
Q Consensus 199 -~----~~~~l~~~~--~~~i~~w~~~~~~~~~-~~~----------~-~~~v~~l~~~~~---~l~~g~~dg~i~vwd~ 256 (434)
+ ++++++++. ++.|.+||..+.+.+. +.. | ...+.++.++++ ++++...++.|.+||+
T Consensus 230 sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~ 309 (543)
T 1nir_A 230 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 309 (543)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence 4 678887764 7899999999988762 222 2 237899999986 7788889999999999
Q ss_pred CCCCCccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEcc----ccccEEEEEEc--CCEEE
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLLCW--DQFLL 327 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~~--~~~l~ 327 (434)
...... . +..+ .+...+..+.|+ +++|+ ++..+++|.+||+.+++++..+.. |......+... +..++
T Consensus 310 ~~~~~l-~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~ 386 (543)
T 1nir_A 310 KDIDNL-T-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 386 (543)
T ss_dssp TTSSSC-E-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEE
T ss_pred cCCCcc-e-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEE
Confidence 876321 1 1122 244456667775 56655 455689999999999999988874 55444444322 34566
Q ss_pred EEe-CCCcEEEEEcCC-------CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-------CCCeEEEEeCCCCcc
Q 013881 328 SCS-LDKTIKVWFATD-------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-------NDNSVRFYDLPSFAE 392 (434)
Q Consensus 328 s~s-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~ 392 (434)
++. .|++|.+||+.+ .+.+..+..+. ..+..+.++|+++ +|++++ .+++|.+||+.+++.
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~---~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSS---HLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCC---EEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCC---cEEEecCCCCCcccCceEEEEECCCCCC
Confidence 665 589999999987 55555555443 3456677777665 888876 277999999999887
Q ss_pred ccc-c---------cccCcEEEEEecCCc-EEEEe-----CCCCCEEEEEccCCccc
Q 013881 393 RGK-I---------FAKQEIRAIQLGPGG-LFFTG-----DGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 393 ~~~-~---------~~~~~v~~~~~spdg-~l~s~-----~~dg~i~iwd~~~g~~~ 433 (434)
... + .+...+..+.|+|+| .|+++ +.|+.|.|||.++++++
T Consensus 462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 633 2 235679999999999 66644 35899999999999864
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=221.50 Aligned_cols=230 Identities=8% Similarity=0.010 Sum_probs=174.8
Q ss_pred EccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEE
Q 013881 157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236 (434)
Q Consensus 157 ~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~ 236 (434)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------------------------~~~v~~~~ 83 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------------------------------TPNPRTGG 83 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------------------------------------EECCCTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------------------------------------cCCceeee
Confidence 345688999999999999999999998776643 12344555
Q ss_pred EeCCEEEEEeCCCcEEEEEcCCCCC-----ccccceee-cCccceEEEEEECC----CEEEEecCCCcEEEEeCCCCeEE
Q 013881 237 VGNDLLFAGTQDGAILAWKFNVTTN-----CFEPAASL-KGHSLAVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 237 ~~~~~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~-~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
++|. +++++.|++|++|+...... ..+.+... .+|...|.++.+++ ++|++++.||+|++||+++++++
T Consensus 84 ~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~ 162 (343)
T 3lrv_A 84 EHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY 162 (343)
T ss_dssp CCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE
T ss_pred eCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 6666 78888888888887653210 00222222 36678899999865 58999999999999999999997
Q ss_pred EEEcc-ccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce-EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeE
Q 013881 307 QTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (434)
Q Consensus 307 ~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 382 (434)
..+.. |...+.+++|+ +.+|++|+.|+.|++||+++...+ ..+.. .+...+.+++|+|++. +|++++ |+.|
T Consensus 163 ~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~---~l~s~~-~~~v 237 (343)
T 3lrv_A 163 IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGY---WMVVEC-DQTV 237 (343)
T ss_dssp EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSS---EEEEEE-SSBE
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCC---EEEEEe-CCeE
Confidence 77644 55689999998 679999999999999999988876 44433 2346799999987655 899988 5599
Q ss_pred EEEeCCCCcccccccc----cCcE--EEEEecCCc-EEEEeCC-CCCEEEEEccCCc
Q 013881 383 RFYDLPSFAERGKIFA----KQEI--RAIQLGPGG-LFFTGDG-TGQVRVWQWCNGP 431 (434)
Q Consensus 383 ~iwd~~~~~~~~~~~~----~~~v--~~~~~spdg-~l~s~~~-dg~i~iwd~~~g~ 431 (434)
++||+++.+....+.. ...+ .+++|+|++ +|++++. |+.|+||++.++.
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9999999877655442 2233 469999999 9999888 9999999996653
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.7e-27 Score=223.31 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=160.7
Q ss_pred cEEEecCCCeEEEEeCCCCce----EEEEecCccccEEEEEccC--------CCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 121 NCMYGEKCKFLHSWTVGDGFK----LLTQLEGHQKVVSGITLPS--------GSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~----~~~~l~~h~~~V~~l~~s~--------~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
.+++++.|++|++||..++.. .+..+.+|.+.|++|+|+| |+++|||++.|++|+|||+.++..+..
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~- 181 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA- 181 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-
Confidence 467788999999999988722 2345789999999999997 889999999999999999987765433
Q ss_pred ecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
+..|...|.+++|+|+ +|++++.|++|++||+.++......
T Consensus 182 ------------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 182 ------------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp ------------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred ------------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 4568889999999987 7999999999999999876432111
Q ss_pred ---------------------ceeecCccceEEEEEE---CCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEE
Q 013881 266 ---------------------AASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (434)
Q Consensus 266 ---------------------~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 321 (434)
.....+|...+.++.+ ++..|++++.|+++++||+.+++....+..|...+..+.+
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 1122457777888887 3679999999999999999988877777666554443322
Q ss_pred ------------------c---C-CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 322 ------------------W---D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 322 ------------------~---~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
. + .++++|+.|+.|++||+.++........+. ..|.+++|+|++. +|++++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~---~LA~as~~ 380 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGS---HLAIATEG 380 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSS---EEEEEESS
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCC---EEEEEeCC
Confidence 1 2 256778889999999999888777666655 4699999988766 89998766
Q ss_pred CeEEEEeCCC
Q 013881 380 NSVRFYDLPS 389 (434)
Q Consensus 380 g~i~iwd~~~ 389 (434)
| +.+|.+..
T Consensus 381 G-v~lvrL~g 389 (393)
T 4gq1_A 381 S-VLLTRLMG 389 (393)
T ss_dssp E-EEEEEEGG
T ss_pred C-eEEEEEeC
Confidence 5 66666543
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-26 Score=221.34 Aligned_cols=267 Identities=10% Similarity=0.060 Sum_probs=192.6
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCc---eEEEEecCCce----EEE-E-eCCCEEEEEcCC--cEE-----
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---CAGVINLGGEV----GCM-I-SEGPWIFIGVTN--FVK----- 213 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~----~~~-~-~~~~~l~~~~~~--~i~----- 213 (434)
..++.+++|+++|++|+++ .++.|++||+.+++ .+..+...... ... . .....+...... ...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999999966665 57889999999998 66666543220 000 0 011111110000 000
Q ss_pred -----EEECCCCceEEecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEcC--CCCCccccceeec--CccceEEEEEE
Q 013881 214 -----AWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFN--VTTNCFEPAASLK--GHSLAVVSLVV 281 (434)
Q Consensus 214 -----~w~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~vwd~~--~~~~~~~~~~~~~--~h~~~v~~l~~ 281 (434)
.+.... .......|...|.+++|+++ . +++++.||.|++||+. .+ .....+. .|...|.+++|
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 83 SIKRTAAKVPS-PGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECSSCEEEEEE
T ss_pred cccccCccccC-CCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCCCCceEEEE
Confidence 000000 00123467788999999998 5 5899999999999998 54 4445554 56788999999
Q ss_pred C--CCEEEEecCCCcEEEEeCCCCeEEE----EEccccccEEEEEEcCC-----EEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 282 G--ANKLYSGSMDNSIRVWNLETLQCIQ----TLTEHTSVVMSLLCWDQ-----FLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 282 ~--~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
+ +++|++++.||.|++|++.+++... .+.+|...|.+++|+++ +|++++.|+.|++||+.+...+..+.
T Consensus 158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 6 5689999999999999998877554 77889999999999854 89999999999999999887766543
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc--------------------------cCcEEE
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA--------------------------KQEIRA 404 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~v~~ 404 (434)
. .+...+.+++|+ ++. +|++++.|+.|++||+.+++.+..+.. ...|.+
T Consensus 238 ~-~h~~~v~~~~~s-d~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 238 F-GHKHFVSSICCG-KDY---LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp C-CCSSCEEEEEEC-STT---EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred c-CCCCceEEEEEC-CCC---EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 2 223568889887 443 999999999999999999887665531 346899
Q ss_pred EEecCCc-EEEEeC-CCCCEEEEEc
Q 013881 405 IQLGPGG-LFFTGD-GTGQVRVWQW 427 (434)
Q Consensus 405 ~~~spdg-~l~s~~-~dg~i~iwd~ 427 (434)
++|+|++ +|++++ .|+.|+||++
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999 888887 8999999999
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3.6e-25 Score=212.83 Aligned_cols=266 Identities=13% Similarity=0.103 Sum_probs=206.7
Q ss_pred ecCCC--eEEEEeCCCC-ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCC
Q 013881 125 GEKCK--FLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201 (434)
Q Consensus 125 g~~d~--~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (434)
++.++ .|..||..++ .+.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+..+..
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------- 162 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP----------- 162 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC-----------
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc-----------
Confidence 44555 5555555433 35666676554 456999999888888888899999999999887643211
Q ss_pred CEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 202 ~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
..+.+|...|.+++|+++ ++++++.|+.|++||+++. +....+..|...+.++
T Consensus 163 ---------------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 163 ---------------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL----AYKATVDLTGKWSKIL 217 (433)
T ss_dssp ---------------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSSSSEEEE
T ss_pred ---------------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCCCCeeEE
Confidence 024578889999999776 8899999999999999876 5667777888899999
Q ss_pred EEC--CCEE-EEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe--------CCCcEEEEEcCCCCce
Q 013881 280 VVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS--------LDKTIKVWFATDSGNL 346 (434)
Q Consensus 280 ~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s--------~dg~i~vwd~~~~~~~ 346 (434)
+++ ++++ ++++.|+.|++||+++++.+..+..+ ..+.+++++ +++|++++ .|+.|++||+.+.+..
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 996 4555 56668999999999999998888764 458889987 66888887 5889999999877554
Q ss_pred EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCC-------
Q 013881 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDG------- 418 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~------- 418 (434)
... .+. ..+..+++.|+.. .++++++.|+.|++||+.+++....+.+...+.+++|+|++ +|++++.
T Consensus 297 ~~~-~~~--~~~~~~~~~~~g~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 297 DTI-GPP--GNKRHIVSGNTEN--KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp EEE-EEE--ECEEEEEECSSTT--EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred eec-cCC--CCcceEEECCCCC--EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 443 222 3567788876543 36677789999999999999888888888889999999999 7777765
Q ss_pred --------CCCEEEEEccCCccc
Q 013881 419 --------TGQVRVWQWCNGPVA 433 (434)
Q Consensus 419 --------dg~i~iwd~~~g~~~ 433 (434)
||.|++||+.+++++
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEE
T ss_pred ccccccccceEEEEEECCCCcEE
Confidence 579999999988753
No 126
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=3.1e-25 Score=205.90 Aligned_cols=217 Identities=12% Similarity=0.158 Sum_probs=171.1
Q ss_pred EEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
..+.+|.+.|++++|+|++++|++++.||+|++||+.++.....+ ..
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------------~~ 51 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL---------------------------------SD 51 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE---------------------------------EE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee---------------------------------cc
Confidence 456899999999999999999999999999999999876432111 11
Q ss_pred EecCCCCcEEEEEEeC---C-EEEEEeCCCcEEEEEcCCCCCc-----cccceeecCccceEEEEEEC----CCEEEEec
Q 013881 224 SLSGPVGQVYAMAVGN---D-LLFAGTQDGAILAWKFNVTTNC-----FEPAASLKGHSLAVVSLVVG----ANKLYSGS 290 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~---~-~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~~----~~~l~s~s 290 (434)
.+.+|...|.+++|++ . +|++++.||.|++||+...... ++....+..|...|.++.|+ +++|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 3668999999999987 2 9999999999999999876421 24467788999999999997 55899999
Q ss_pred CCCcEEEEeCCCCeEEEEEc-------------cccccEEEEEEc-----CCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 291 MDNSIRVWNLETLQCIQTLT-------------EHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 291 ~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~l~~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
.||.|++||+++++.+..+. .|...+.++.++ +++|++++.|+.+.+|+.............
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence 99999999999876554332 577889999986 579999999999988877665543233333
Q ss_pred cCCccEEEEEeccCCCC-CcEEEEEeCCCeEEEEeCCCCccc
Q 013881 353 NEEHGVLALCGMPDSEG-KPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
.+...+.+++|+|+... ..+|++++.||.|++||+.++...
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP 253 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence 34467999999887521 148999999999999999875443
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.6e-24 Score=195.63 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=138.9
Q ss_pred eCCcEEEec---CCCeEEEEeCCC-CceEEEEecCccccEEEEEccC---CCCEEEEEECCCcEEEEECCCCceEEEEec
Q 013881 118 VQGNCMYGE---KCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 118 ~~~~~~~g~---~d~~i~vwd~~~-~~~~~~~l~~h~~~V~~l~~s~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
..+.++..+ .|+.|++|++.. + +.+..+.+|...++.++|++ ++.+|++++.|++|+|||+.++++++++..
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 444555543 489999999954 5 88888889999999999998 779999999999999999999999988753
Q ss_pred CCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--------------EEEEEeCCCcEEEEEc
Q 013881 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--------------LLFAGTQDGAILAWKF 256 (434)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--------------~l~~g~~dg~i~vwd~ 256 (434)
+.. +...+.+++|+|+ .+++|+.|++|++||.
T Consensus 222 ~~~----------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 222 DDS----------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp CC-------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred CCc----------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 211 0112333333333 3578999999999999
Q ss_pred CCCCCccccceee-----cCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEE-EEEEc--CCEEEE
Q 013881 257 NVTTNCFEPAASL-----KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM-SLLCW--DQFLLS 328 (434)
Q Consensus 257 ~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~-~l~~~--~~~l~s 328 (434)
.++ +.+..+ .+|...+.+..+++..+++++.|++|+|||+.+++++.++.+|...+. +++|+ +++|++
T Consensus 268 ~tg----k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 268 KTT----LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTT----EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCC----EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 877 333332 467766767777788999999999999999999999999999987655 57888 679999
Q ss_pred EeCCCcEEEEEc
Q 013881 329 CSLDKTIKVWFA 340 (434)
Q Consensus 329 ~s~dg~i~vwd~ 340 (434)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.1e-21 Score=187.38 Aligned_cols=288 Identities=10% Similarity=-0.021 Sum_probs=209.9
Q ss_pred cceEEEEEeCC---cEEEec----CCC----eEEEEeC--CCCceEE--EEecCccccEEEEEccC--------------
Q 013881 110 TDILCRNWVQG---NCMYGE----KCK----FLHSWTV--GDGFKLL--TQLEGHQKVVSGITLPS-------------- 160 (434)
Q Consensus 110 ~~i~c~~~~~~---~~~~g~----~d~----~i~vwd~--~~~~~~~--~~l~~h~~~V~~l~~s~-------------- 160 (434)
..+....|... .+++|+ .+| .|++||+ .++ +.+ ..+.+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35556666332 233554 567 8999999 887 555 56889999988888774
Q ss_pred CCCEEEEEECC------CcEEEEECCCCceEEEEecCCceEEEE--eCCCEEEEEc-CC---cEEEEECCCCceEEecCC
Q 013881 161 GSDKLYSGSKD------ETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TN---FVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 161 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~---~i~~w~~~~~~~~~~~~~ 228 (434)
.+..|+.++.+ ++|++||+..+...........+.++. +++..++.+. ++ .|++||+.+++...+..|
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~ 221 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF 221 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC
Confidence 25667666654 799999998655444444455665554 4777777654 43 899999999998888889
Q ss_pred CCcEEEEEEeCC--EEE-EEeCCCc--EEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecC-CC--cEEEE
Q 013881 229 VGQVYAMAVGND--LLF-AGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DN--SIRVW 298 (434)
Q Consensus 229 ~~~v~~l~~~~~--~l~-~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg--~i~vw 298 (434)
...+.+++|+|+ .|+ +++.++. |++||+.++ + ...+..|...+.++.|+ +++|++++. ++ .|++|
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 999999999998 555 6766665 999999875 2 35667788889999996 557777765 44 68888
Q ss_pred eCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
|+.+++. ..+..+...+.+++|+ +++|++++.+ ..|++||+.++... .+..+ ..+..++|+|++. +|
T Consensus 297 d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~spdg~---~l 368 (415)
T 2hqs_A 297 NINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST---FLDETPSLAPNGT---MV 368 (415)
T ss_dssp ETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS---SSCEEEEECTTSS---EE
T ss_pred ECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC---CCcCCeEEcCCCC---EE
Confidence 9988764 4566677788889987 6788887764 58999999876542 22222 2678888887655 77
Q ss_pred EEEeCCC---eEEEEeCCCCcccccccccCcEEEEEecCCc
Q 013881 374 LCSCNDN---SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG 411 (434)
Q Consensus 374 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg 411 (434)
++++.++ .|++||+..........+.+.|.+++|+|..
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 7777766 8999999865544444567899999999964
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=7.9e-22 Score=202.71 Aligned_cols=311 Identities=8% Similarity=0.026 Sum_probs=218.9
Q ss_pred cceEEEEEeCCc--EEEecC-CC-----eEEEEeCCCCceEEEEecCccc------------------------cEEEEE
Q 013881 110 TDILCRNWVQGN--CMYGEK-CK-----FLHSWTVGDGFKLLTQLEGHQK------------------------VVSGIT 157 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~-d~-----~i~vwd~~~~~~~~~~l~~h~~------------------------~V~~l~ 157 (434)
..+.++.|+++. +++++. |+ .|++||+.++ +....+..|.. .|.+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 368899998764 666666 77 9999999988 66666665543 388999
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCC---ceEEEEecCCceEEE--EeCCCEEEEEcCCcEEEEECCCCceEEecCC-CCc
Q 013881 158 LPSGSDKLYSGSKDETVRVWDCASG---QCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQ 231 (434)
Q Consensus 158 ~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~-~~~ 231 (434)
|||||++|++++. +.|++||+.++ +..........+..+ .+++++|+...++.|.+||+.+++...+... ...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence 9999999999987 99999999988 544433333444444 4588889888889999999999877654432 222
Q ss_pred ----------------EEEEEEeCC--EEEEEeCCC---------------------------------cEEEEEcCC-C
Q 013881 232 ----------------VYAMAVGND--LLFAGTQDG---------------------------------AILAWKFNV-T 259 (434)
Q Consensus 232 ----------------v~~l~~~~~--~l~~g~~dg---------------------------------~i~vwd~~~-~ 259 (434)
+..+.|+|+ .|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 477999999 677776655 788888877 5
Q ss_pred CCccccceee--cCccceEEEEEE-CCCEEEEec-----CCCcEEEEeCCCCeEEEEEccccc----cEEEEEEc--CCE
Q 013881 260 TNCFEPAASL--KGHSLAVVSLVV-GANKLYSGS-----MDNSIRVWNLETLQCIQTLTEHTS----VVMSLLCW--DQF 325 (434)
Q Consensus 260 ~~~~~~~~~~--~~h~~~v~~l~~-~~~~l~s~s-----~dg~i~vwd~~~~~~~~~~~~~~~----~v~~l~~~--~~~ 325 (434)
. ..... ..|...+..+.| ++++|++++ .+..|++||+.+++....+..+.. .+..+.|+ +++
T Consensus 275 ~----~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 275 Q----TQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp C----CEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred c----eEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 3 22222 146667776666 456777554 367899999999988877766553 34567776 678
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEE-EeccCCCCCcEEEEEeCCC--eEEEEeCCC-CcccccccccCc
Q 013881 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL-CGMPDSEGKPVLLCSCNDN--SVRFYDLPS-FAERGKIFAKQE 401 (434)
Q Consensus 326 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg--~i~iwd~~~-~~~~~~~~~~~~ 401 (434)
+++++.|+.++||.+........+..+ ...+..+ .|++++. .++++++.++ .++||++.. +.....+.....
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~~~~l~~~--~~~v~~~~~~s~dg~--~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~ 426 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGKAAALTHG--NWSVDELLAVDEKAG--LAYFRAGIESARESQIYAVPLQGGQPQRLSKAPG 426 (741)
T ss_dssp EEEECTTSSCEEEEECSSSCEEESCCS--SSCEEEEEEEETTTT--EEEEEECSSCTTCBEEEEEETTCCCCEECCCSCS
T ss_pred EEEecCCCccEEEEEcCCCCeeeeeec--ceEEEeEeEEeCCCC--EEEEEEeCCCCceEEEEEEEcCCCCeeecccCCC
Confidence 888899998888887633333333222 2345555 4776543 3445666665 899999864 444555555677
Q ss_pred EEEEEecCCc-EEEEeCCC----CCEEEEEccCC
Q 013881 402 IRAIQLGPGG-LFFTGDGT----GQVRVWQWCNG 430 (434)
Q Consensus 402 v~~~~~spdg-~l~s~~~d----g~i~iwd~~~g 430 (434)
+..++|+||| +|+....+ ..+.+|+...+
T Consensus 427 ~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 427 MHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 8999999999 66654333 56889987654
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=2.6e-21 Score=184.92 Aligned_cols=270 Identities=12% Similarity=0.007 Sum_probs=197.9
Q ss_pred ccccEEEEEccCCCC-EEEEEE----CCC----cEEEEEC--CCCceEEE--EecCC-ceEEEE----------------
Q 013881 149 HQKVVSGITLPSGSD-KLYSGS----KDE----TVRVWDC--ASGQCAGV--INLGG-EVGCMI---------------- 198 (434)
Q Consensus 149 h~~~V~~l~~s~~~~-~l~s~s----~dg----~v~iwd~--~~~~~~~~--~~~~~-~~~~~~---------------- 198 (434)
+...|...+|.+.+. ++++|+ .|| +|+|||+ .+++.+.. +..+. .+..+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345777788888764 666776 467 8999999 89887743 33221 111111
Q ss_pred -eCCCEEEEEcC------CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCC---cEEEEEcCCCCCccccc
Q 013881 199 -SEGPWIFIGVT------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPA 266 (434)
Q Consensus 199 -~~~~~l~~~~~------~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg---~i~vwd~~~~~~~~~~~ 266 (434)
+...+++++.+ +.|++||+.......+..|...+.+++|+|+ .|++++.++ .|++||+.++. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~----~- 215 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----V- 215 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----E-
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc----E-
Confidence 13344455443 6999999998777788889999999999998 888888775 99999998763 2
Q ss_pred eeecCccceEEEEEEC--CCEEE-EecCCCc--EEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-CC--cEE
Q 013881 267 ASLKGHSLAVVSLVVG--ANKLY-SGSMDNS--IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIK 336 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~ 336 (434)
..+..|...+.+++|+ +++|+ +++.|+. |++||+.+++. ..+..|...+.+++|+ +++|++++. ++ .|.
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 3466677889999997 45666 6666655 99999998876 6777888899999998 677888776 44 677
Q ss_pred EEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC---CeEEEEeCCCCcccccccccCcEEEEEecCCc-E
Q 013881 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND---NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-L 412 (434)
Q Consensus 337 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~ 412 (434)
+||+.+.... .+.. ....+..+.|+|++. +|++++.+ ..|++||+.+++... +.....+.+++|+||| +
T Consensus 295 ~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~---~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 295 KVNINGGAPQ-RITW--EGSQNQDADVSSDGK---FMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTM 367 (415)
T ss_dssp EEETTSSCCE-ECCC--SSSEEEEEEECTTSS---EEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSE
T ss_pred EEECCCCCEE-EEec--CCCcccCeEECCCCC---EEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCE
Confidence 7788766532 2222 234577888887655 77777654 589999999887644 3333489999999999 8
Q ss_pred EEEeCCCC---CEEEEEccCCc
Q 013881 413 FFTGDGTG---QVRVWQWCNGP 431 (434)
Q Consensus 413 l~s~~~dg---~i~iwd~~~g~ 431 (434)
|++++.++ .|++||+..++
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEEcCCCccEEEEEECCCCc
Confidence 88888776 79999998654
No 131
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=6.1e-21 Score=195.07 Aligned_cols=306 Identities=12% Similarity=0.057 Sum_probs=205.7
Q ss_pred EEEEeCCcEEEecCCCeEEEEeCCCCceEE-EEecCcc-----------------ccEEEEEccCCCCEEEEEECCCcEE
Q 013881 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQ-----------------KVVSGITLPSGSDKLYSGSKDETVR 175 (434)
Q Consensus 114 c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~-~~l~~h~-----------------~~V~~l~~s~~~~~l~s~s~dg~v~ 175 (434)
.+.|+.+.+++.+.++ | +||+.++ +.+ ..+..|. ..|.+++|+|| ++++.+. ++.|+
T Consensus 30 ~~~w~g~~~~~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~ 104 (706)
T 2z3z_A 30 GLQWMGDNYVFIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV 104 (706)
T ss_dssp TCEEETTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred CCcCcCCeEEEEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence 3677755677777777 8 9999998 552 3444443 46999999999 6666554 59999
Q ss_pred EEECCCCceEEEEecCCce--EEEEeCCCEEEEEcCCcEEEEECCC-----CceEEecC-CCCc--------------EE
Q 013881 176 VWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQT-----NTDLSLSG-PVGQ--------------VY 233 (434)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~~w~~~~-----~~~~~~~~-~~~~--------------v~ 233 (434)
+||+.+++..........+ ..+.++++.++...++.|.+|++.+ ++...+.. +... +.
T Consensus 105 ~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~ 184 (706)
T 2z3z_A 105 GFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK 184 (706)
T ss_dssp EEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred EEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence 9999998876665554433 3455688888888899999999998 76654333 2232 47
Q ss_pred EEEEeCC--EEEEEe---------------------------------CCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 234 AMAVGND--LLFAGT---------------------------------QDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 234 ~l~~~~~--~l~~g~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
++.|+|+ .|++++ .+..|++||+.++.. ..+.....|...+..
T Consensus 185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT--VYLQTGEPKEKFLTN 262 (706)
T ss_dssp SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE--EECCCCSCTTCEEEE
T ss_pred eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce--EeeccCCCCceeEee
Confidence 8999999 777776 446799999987631 112222356778889
Q ss_pred EEEC--CCEEEEecCCC-----cEEEEeCCCCeEEEEEc-c-ccc---cEEEEEEc----CCEEEEEeCCCcEEEEEcC-
Q 013881 279 LVVG--ANKLYSGSMDN-----SIRVWNLETLQCIQTLT-E-HTS---VVMSLLCW----DQFLLSCSLDKTIKVWFAT- 341 (434)
Q Consensus 279 l~~~--~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~-~-~~~---~v~~l~~~----~~~l~s~s~dg~i~vwd~~- 341 (434)
+.|+ +++|++++.++ .|++||+.+++....+. . +.. .+..+.|+ ++++++++.|+.++||++.
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~ 342 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT 342 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence 9886 56788877665 89999999984444332 2 221 23455664 5688888899999999886
Q ss_pred CCCceEEEeeecCCccEEE-EEeccCCCCCcEEEEEeCCC----eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEE
Q 013881 342 DSGNLEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCNDN----SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s 415 (434)
+.+.+..+..+ ...+.. +.|++++. .+++++..++ .|..||+.+++ ...+.+...+..++|+||| +|+.
T Consensus 343 ~~~~~~~l~~~--~~~v~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 343 TGRLIRQVTKG--EWEVTNFAGFDPKGT--RLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp TSCEEEECCCS--SSCEEEEEEECTTSS--EEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEE
T ss_pred CCCEEEecCCC--CeEEEeeeEEcCCCC--EEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEE
Confidence 34434333332 233544 67776543 3444555554 77778887765 4445567779999999999 6665
Q ss_pred eCCC----CCEEEEEccCCc
Q 013881 416 GDGT----GQVRVWQWCNGP 431 (434)
Q Consensus 416 ~~~d----g~i~iwd~~~g~ 431 (434)
...+ +.|++||+.+++
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 5333 569999998875
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.9e-21 Score=179.90 Aligned_cols=266 Identities=11% Similarity=0.049 Sum_probs=187.7
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCcc-c-cEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEecCCceEEE
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-K-VVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCM 197 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~-~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (434)
.+++++.++.|++||+.++ +.+..+.... . .+..++|+|++++|+ +++.++.|.+||+.+++.+..+......
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred EEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 4677889999999999998 7777776332 2 588999999998765 5556789999999998877655421100
Q ss_pred EeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe------------CCCcEEEEEcCCCCCcc
Q 013881 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT------------QDGAILAWKFNVTTNCF 263 (434)
Q Consensus 198 ~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~------------~dg~i~vwd~~~~~~~~ 263 (434)
.+...+..++|+++ .|+++. .++.|.+||+.+.
T Consensus 79 -----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---- 125 (337)
T 1pby_B 79 -----------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---- 125 (337)
T ss_dssp -----------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----
T ss_pred -----------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----
Confidence 01113446778877 666665 5799999999876
Q ss_pred ccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEcccc--ccEEEEEEcCCEEEEEeCC-C-----
Q 013881 264 EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT--SVVMSLLCWDQFLLSCSLD-K----- 333 (434)
Q Consensus 264 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~~~~~l~s~s~d-g----- 333 (434)
+....+.. ...+..+.++ +++|+++ ++.|++||+.+++.+..+..+. .++ .+..++..++..+.+ +
T Consensus 126 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 126 SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEE
T ss_pred cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc-eeCCCccEEeeeccCCCceeee
Confidence 33333332 2335556665 5667776 6899999999999888776543 222 223334444333322 2
Q ss_pred ------------------cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 334 ------------------TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 334 ------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
.|.+||+.+.+.. .............++++|++. +++++ ++.|.+||+.+++.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT---RAFGA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS---EEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC---EEEEe--CCeEEEEECCCCcCcce
Confidence 4789999887654 333333334567788877654 67766 79999999999888877
Q ss_pred ccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 396 IFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 396 ~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.....+.+++|+|+| +|++++.++.|++||+.+++++
T Consensus 276 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 7766778999999999 8888899999999999988754
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=4.1e-20 Score=182.18 Aligned_cols=278 Identities=9% Similarity=0.046 Sum_probs=207.1
Q ss_pred eEEEEEeCCc--EEEecCCCeEEEEeC--CCCceEEEEecCccccEEEEEccC----CCCEEEEEEC-CCcEEEEECCCC
Q 013881 112 ILCRNWVQGN--CMYGEKCKFLHSWTV--GDGFKLLTQLEGHQKVVSGITLPS----GSDKLYSGSK-DETVRVWDCASG 182 (434)
Q Consensus 112 i~c~~~~~~~--~~~g~~d~~i~vwd~--~~~~~~~~~l~~h~~~V~~l~~s~----~~~~l~s~s~-dg~v~iwd~~~~ 182 (434)
+.++.|+++. +++++.|+.|++||+ .++ +.+.++.. ...+..++|+| |+++|++++. +++|.|||..++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 7788897764 677888999999999 777 88888884 45679999999 9999999885 899999999999
Q ss_pred ceEEEEecCC------------ceEEEEe--CCCEEEEE--cCCcEEEEECCCCceEE--ecCCCCcEEEEEEeCC--EE
Q 013881 183 QCAGVINLGG------------EVGCMIS--EGPWIFIG--VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LL 242 (434)
Q Consensus 183 ~~~~~~~~~~------------~~~~~~~--~~~~l~~~--~~~~i~~w~~~~~~~~~--~~~~~~~v~~l~~~~~--~l 242 (434)
+++.++.... .+..+.. ++..+++. .++.|.+||..+.+.+. ...+...+..+.|+|+ +|
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 9999887531 3444433 35554443 37799999998765432 3345667888999998 44
Q ss_pred E-EEeCCCcEEEEEcCCCCCccccceeecC----ccceEEEEE-EC-CCEEEEec-CCCcEEEEeCCC-------CeEEE
Q 013881 243 F-AGTQDGAILAWKFNVTTNCFEPAASLKG----HSLAVVSLV-VG-ANKLYSGS-MDNSIRVWNLET-------LQCIQ 307 (434)
Q Consensus 243 ~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~----h~~~v~~l~-~~-~~~l~s~s-~dg~i~vwd~~~-------~~~~~ 307 (434)
+ ++..+++|.+||..++ +....+.. |......+. .+ +..++++. .|++|.+||+.+ .++++
T Consensus 339 ~va~~~~~~v~v~D~~tg----~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDR----RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp EEEEGGGTEEEEEETTTT----EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEecCCCeEEEEECCCC----eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 4 5566899999999987 44444442 544333343 23 34566665 689999999998 89999
Q ss_pred EEccccccEEEEEEc--CCEEEEEe-------CCCcEEEEEcCCCCceEEEe-e------ecCCccEEEEEeccCCCCCc
Q 013881 308 TLTEHTSVVMSLLCW--DQFLLSCS-------LDKTIKVWFATDSGNLEVTY-T------HNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~--~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~ 371 (434)
++..|...+..+.++ +++|++++ .+++|.|||+.+.+...... . ......+..+.|++++.
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~--- 491 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD--- 491 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS---
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC---
Confidence 999998888888887 67888887 27899999999888763332 1 12245688888887765
Q ss_pred EEEEEe-----CCCeEEEEeCCCCcccccccc
Q 013881 372 VLLCSC-----NDNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 372 ~l~~~~-----~dg~i~iwd~~~~~~~~~~~~ 398 (434)
.++++. .|+.|.|||..+++++..+..
T Consensus 492 ~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 492 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 555442 479999999999998887764
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.2e-20 Score=170.67 Aligned_cols=265 Identities=13% Similarity=0.259 Sum_probs=175.0
Q ss_pred cCCCeEEEEeCC-CC-ceEEEEecCccccEEEEEccCCCCEEEEEECC-CcEEEEECC--CCceEEEEecCCceEEEEeC
Q 013881 126 EKCKFLHSWTVG-DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-ETVRVWDCA--SGQCAGVINLGGEVGCMISE 200 (434)
Q Consensus 126 ~~d~~i~vwd~~-~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~ 200 (434)
+.++.|++|++. ++ .+.+..+ .|...+.+++|+|++++|++++.+ +.|++|++. +++.....
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~------------ 78 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------ 78 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------------
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc------------
Confidence 679999999996 33 2334443 477889999999999999999887 999999987 44432110
Q ss_pred CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEE-eCCCcEEEEEcCCCCCccccceeecCccceEE
Q 013881 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 201 ~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
.+..+ ..+..++|+++ .|+++ ..++.|.+||+..+ ...+....+..+ ..+.
T Consensus 79 -----------------------~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~-~~~~ 132 (343)
T 1ri6_A 79 -----------------------ESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVEGL-DGCH 132 (343)
T ss_dssp -----------------------EEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEECCC-TTBC
T ss_pred -----------------------ccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-ccccccccccCC-CCce
Confidence 11222 26678899988 55554 45889999999522 111333344333 3466
Q ss_pred EEEEC--CCEEEEec-CCCcEEEEeCCC-CeEEE----EEcc-ccccEEEEEEc--CCEEEEEe-CCCcEEEEEcCC--C
Q 013881 278 SLVVG--ANKLYSGS-MDNSIRVWNLET-LQCIQ----TLTE-HTSVVMSLLCW--DQFLLSCS-LDKTIKVWFATD--S 343 (434)
Q Consensus 278 ~l~~~--~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~--~ 343 (434)
++.++ ++++++++ .++.|++||+.+ ++... .+.. ....+..++++ ++++++++ .++.|.+|++.. +
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 67775 55777666 899999999987 65432 2222 33467788887 56665554 789999999964 2
Q ss_pred Cc--eEEEeeecC----CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC----CCcccccccccCcEEEEEecCCc-E
Q 013881 344 GN--LEVTYTHNE----EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP----SFAERGKIFAKQEIRAIQLGPGG-L 412 (434)
Q Consensus 344 ~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~v~~~~~spdg-~ 412 (434)
.. ......... ...+..++++|++. .++++...++.|.+||+. +.+.+..+.....+..++|+|+| +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~--~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 290 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGR--HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY 290 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred cEEEEeeccccCccccccCCccceEECCCCC--EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCE
Confidence 22 111211111 23455788876644 244455579999999998 23344444444558899999999 7
Q ss_pred EEEeC-CCCCEEEEEcc--CCc
Q 013881 413 FFTGD-GTGQVRVWQWC--NGP 431 (434)
Q Consensus 413 l~s~~-~dg~i~iwd~~--~g~ 431 (434)
|++++ .++.|.+|++. +|+
T Consensus 291 l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEECTTTCEEEEEEEETTTTE
T ss_pred EEEecCCCCeEEEEEEcCCCce
Confidence 77776 68999999654 554
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2e-19 Score=166.18 Aligned_cols=265 Identities=8% Similarity=0.058 Sum_probs=184.3
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCce-EEEEecCCceE---E
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQC-AGVINLGGEVG---C 196 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~-~~~~~~~~~~~---~ 196 (434)
+++.+.++.|++||..++ +.+..+..+...+ .++|+|++++|++++. ++.|.+||+.+++. ...+....... .
T Consensus 13 ~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD 90 (331)
T ss_dssp EEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred EEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence 455668899999999998 7777777777777 9999999997777666 89999999999987 66666554433 3
Q ss_pred EEeCCCEEEEEcCC----cEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCc-EEEEEcCCCCCcccccee
Q 013881 197 MISEGPWIFIGVTN----FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGA-ILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 197 ~~~~~~~l~~~~~~----~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~-i~vwd~~~~~~~~~~~~~ 268 (434)
+.+++.++++...+ .|.+||+.+++............+++|+|+ ++++...++. |.+|++............
T Consensus 91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 44578888876554 899999999988755555566799999998 4555566688 999999864321111111
Q ss_pred ecCccceEEEEEEC--CCEE-EEecCCCcEEEEeCCCCeE---EEEEccccccEEEEEEc--CCEEEEEe-CCCcEEEEE
Q 013881 269 LKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWF 339 (434)
Q Consensus 269 ~~~h~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd 339 (434)
..........+.++ ++++ +++..++.|++||+.+++. +..+..+ ..+..++++ +++|+++. .++.|.+||
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 11233446777776 5544 5556789999999999888 7777644 556777887 66666554 578899999
Q ss_pred cCCCCc--eEEEeee--cCC---ccEEEEEeccCCCCCcEEE-EEeCCCeEEEEeCCCCcc
Q 013881 340 ATDSGN--LEVTYTH--NEE---HGVLALCGMPDSEGKPVLL-CSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 340 ~~~~~~--~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 392 (434)
+.+.+. +..+... ... .....++++|++. +|+ ++..++.|.+||+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET---KLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS---EEEEEETTTTEEEEEETTSCEE
T ss_pred CCCCceeeecccccccccCCCCcccccceEECCCCC---EEEEecCCCCcEEEEEecCCcc
Confidence 987654 2222211 001 1123466766544 554 555577999999987543
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=5.1e-19 Score=164.81 Aligned_cols=261 Identities=10% Similarity=0.069 Sum_probs=193.6
Q ss_pred ccccEEEEEccCCCCEEEEEEC-------CCcEEEEECCCCceEEEEecCCceE--EEEeCCCEEEEE-c-CCcEEEEEC
Q 013881 149 HQKVVSGITLPSGSDKLYSGSK-------DETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIG-V-TNFVKAWNT 217 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~-~~~i~~w~~ 217 (434)
....+..++|+|++++|++++. ++.|.+||..+++.+..+....... .+.+++..++++ . ++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4467889999999999988874 5689999999999998888765443 344577755554 3 579999999
Q ss_pred CCCceE-EecCCCC---------cEEEEEEeCC--EEEEEe--CCCcEEEEEcCCCCCccccceeecCccceEEEEEE--
Q 013881 218 QTNTDL-SLSGPVG---------QVYAMAVGND--LLFAGT--QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-- 281 (434)
Q Consensus 218 ~~~~~~-~~~~~~~---------~v~~l~~~~~--~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-- 281 (434)
.+++.. .+..+.. .+.++.|+++ .++++. .++.|.+||..+. +....+..+...+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----KLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----EEEEEECCCCTTCCCCEEET
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----ceEEEecCCCCccceEEECC
Confidence 998875 3333221 2788999988 555554 5889999999876 455555534444555555
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEEcc----ccccEEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCceEEEeeecC
Q 013881 282 GANKLYSGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNE 354 (434)
Q Consensus 282 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~ 354 (434)
+++++++++.++.|.+||+.+++.+..+.. +...+..++++ ++++++++. ++.|.+||+.+.+.+..+....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 567899999999999999999999888765 45567778887 666666655 5999999998887665555432
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCC
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
...+.+++++. .++++...++.|.+||+.+++.+..+.....+..++|+||| +|+++..+
T Consensus 274 ---~~~~~~s~dg~--~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 ---SLAVLFNPARN--EAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---CCCEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred ---CceEEECCCCC--EEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 13466665543 34555557999999999999988888777789999999999 66665544
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.5e-19 Score=190.75 Aligned_cols=312 Identities=13% Similarity=0.051 Sum_probs=229.7
Q ss_pred cccccceEEEEEeCCcEE-EecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 106 AVIKTDILCRNWVQGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 106 ~~~~~~i~c~~~~~~~~~-~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
..|...+.+..|+++.++ +++.++.+.||.+.........+..|. .+..++|+|||++|+.+. ++.|.+||+...+.
T Consensus 200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l 277 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI 277 (1045)
T ss_dssp ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE
T ss_pred cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe
Confidence 467788999999888654 456778889998653213455666665 466789999999999884 89999999954443
Q ss_pred EEEEecC--------------CceEEEE-eCCCEEEEEcCCcEEEEECCCCceEEecCCCC-cEEEEEEeCC--EEEEEe
Q 013881 185 AGVINLG--------------GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG-QVYAMAVGND--LLFAGT 246 (434)
Q Consensus 185 ~~~~~~~--------------~~~~~~~-~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~-~v~~l~~~~~--~l~~g~ 246 (434)
..+... -....+. +++..++.+.++.+.+|+...+....+..|.. .+..+.|+ + .|+.++
T Consensus 278 -~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 278 -EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp -EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEE
T ss_pred -eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEE
Confidence 344331 1234456 77888888779999999999988878888888 89999999 8 777777
Q ss_pred CCCcEE-EEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-
Q 013881 247 QDGAIL-AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW- 322 (434)
Q Consensus 247 ~dg~i~-vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~- 322 (434)
.++.|. +|++.... ...+.+|...+..++|+ +++|++++.++.|++||+.+++....+..|...+..++|+
T Consensus 356 ~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 356 REGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp TTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred CCCceEEEEECCCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 788888 89987652 23334777888888886 5689999999999999999999888887899999999998
Q ss_pred -CCEEEEEeCCC----------cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 323 -DQFLLSCSLDK----------TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 323 -~~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
+++|++++.++ .|++||+.++. ...+..+ ...+..+.|+|++. .|++++.++...+|+.....
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~--~~~~~~~~~spdG~---~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE--NSHDYAPAFDADSK---NLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS--SSBEEEEEECTTSC---EEEEEESCCCCCEECSSSSC
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC--CcccCCceEcCCCC---EEEEEecccCCcCcchhccc
Confidence 67888887654 89999998764 3333332 34567788877655 78888887776666543221
Q ss_pred c-------------------------------------------cccc-cccCcEEEEEecCCc-EEEE-----------
Q 013881 392 E-------------------------------------------RGKI-FAKQEIRAIQLGPGG-LFFT----------- 415 (434)
Q Consensus 392 ~-------------------------------------------~~~~-~~~~~v~~~~~spdg-~l~s----------- 415 (434)
. +..+ .+...+..++++||| ++++
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~ 584 (1045)
T 1k32_A 505 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 584 (1045)
T ss_dssp EECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHH
T ss_pred cccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccc
Confidence 1 0011 124668899999999 6775
Q ss_pred --eCCCCCEEEEEccCCcc
Q 013881 416 --GDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 416 --~~~dg~i~iwd~~~g~~ 432 (434)
......|.+||+.+++.
T Consensus 585 ~~~~~~~~l~~~d~~~~~~ 603 (1045)
T 1k32_A 585 QGAPEKGVLLKYDVKTRKV 603 (1045)
T ss_dssp HCCCCCEEEEEEETTTCCE
T ss_pred cccCCCceEEEEECCCCcE
Confidence 12355788888888764
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.6e-19 Score=190.59 Aligned_cols=272 Identities=9% Similarity=-0.004 Sum_probs=203.3
Q ss_pred EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC-CceEEEEecCC--ceEEEEeCCCEEEEEcCCcEEEEECCCCc
Q 013881 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG--EVGCMISEGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
.+.+|...+.++.|+++ .++++++.|+++.||.+.. +.....+.... ....+.+++..++.+.++.|.+|++....
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 276 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence 34567888999999988 6777888899999998653 33333443332 24466778888888889999999996555
Q ss_pred eEEecC-----------CCCcEEEEEEe-CC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccc-eEEEEEEC-CCE
Q 013881 222 DLSLSG-----------PVGQVYAMAVG-ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL-AVVSLVVG-ANK 285 (434)
Q Consensus 222 ~~~~~~-----------~~~~v~~l~~~-~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~~-~~~ 285 (434)
...+.. |...+.+++|+ |+ .|++++ ++.|.+|++.... ...+..|.. .+..+.|+ ++.
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~sdg~~ 350 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGDTKVA 350 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEECSCCSCEEEEEECSSSEEE
T ss_pred eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEcCCCe
Confidence 544443 33468899999 98 666666 8899999987652 233556666 78888886 446
Q ss_pred EEEecCCCcEE-EEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEE
Q 013881 286 LYSGSMDNSIR-VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (434)
Q Consensus 286 l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 362 (434)
|+.++.+..|. +||+.+++.. .+..|...+..++|+ +++|++++.++.|++||+.++........+. ..+..++
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~--~~v~~~~ 427 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--AMITDFT 427 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCCEE
T ss_pred EEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC--CCccceE
Confidence 88888788898 9999887654 444788889999998 6799999999999999998876554443333 3466788
Q ss_pred eccCCCCCcEEEEEeCCC----------eEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 363 GMPDSEGKPVLLCSCNDN----------SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
|+|++. +|++++.++ .|++||+.+++......+...+..++|+||| +|++++.++...+|+...
T Consensus 428 ~SpDG~---~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 428 ISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp ECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ECCCCC---eEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 877655 777776644 9999999988754444567778999999999 899999888888887654
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.3e-19 Score=162.30 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=177.5
Q ss_pred ecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC-CceEEEEecC--Cce--EEEEe
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLG--GEV--GCMIS 199 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~--~~~--~~~~~ 199 (434)
++.++.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++........ ..+ ..+.+
T Consensus 18 ~~~~~~i~~~d~~~~-~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR-KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTT-EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCC-cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 457889999999987 544 4556899999999999999999987 78999999999 8776655443 223 34455
Q ss_pred CCCEEEEEc-----CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEcCCCCCccccceeecC
Q 013881 200 EGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 200 ~~~~l~~~~-----~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
++.+++++. ...|..++..++....+..+. .+..++|+++ .| +++..++.+.+|+++... .....+..
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~ 170 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---GVETRLTH 170 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---CCEEECCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC---CcceEccc
Confidence 777777765 235555666666655554444 4889999988 44 478899999999976543 23355666
Q ss_pred ccceEEEEEEC--CCEEEEec-CCCcEEEEeCC-CCeEEEEEccccccEEEEEEc--CCEEEEEeCC-----------Cc
Q 013881 272 HSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD-----------KT 334 (434)
Q Consensus 272 h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-----------g~ 334 (434)
+...+.++.|+ +++|+.++ .++.+++|++. .+..+..+..|...+..+.|+ +++|++++.+ +.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 77888999986 45666554 68999999986 566677888888889999997 6788888765 56
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
|.+||+.+...............+..++|+|++. .|++++.+
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~~~~~~ 292 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD---EFAYVRYF 292 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS---EEEEEEEC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCC---EEEEEEec
Confidence 9999998776544443223334566777776654 66666654
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=2.3e-19 Score=184.31 Aligned_cols=271 Identities=8% Similarity=-0.007 Sum_probs=195.5
Q ss_pred cccEEEEEccCCCCEEEEEEC-CC-----cEEEEECCCCceEEEEecCCc-------------------------e--EE
Q 013881 150 QKVVSGITLPSGSDKLYSGSK-DE-----TVRVWDCASGQCAGVINLGGE-------------------------V--GC 196 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~-dg-----~v~iwd~~~~~~~~~~~~~~~-------------------------~--~~ 196 (434)
...|.+++|+|||++|++++. |+ +|++||+.+++....+..... + ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 999999999988777754321 2 23
Q ss_pred EEeCCCEEEEEcCCcEEEEECCCC---ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecC
Q 013881 197 MISEGPWIFIGVTNFVKAWNTQTN---TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 197 ~~~~~~~l~~~~~~~i~~w~~~~~---~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
+.+++++|+.+..+.|.+||+.++ ....+..+...+..++|+|+ .|+.++ ++.|++||+.++ +.......
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g----~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG----RQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT----EEEECCCC
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC----CEEEeccC
Confidence 456888888888899999999998 66678888899999999999 677666 569999999876 22222222
Q ss_pred ccce----------------EEEEEEC--CCEEEEecCCC---------------------------------cEEEEeC
Q 013881 272 HSLA----------------VVSLVVG--ANKLYSGSMDN---------------------------------SIRVWNL 300 (434)
Q Consensus 272 h~~~----------------v~~l~~~--~~~l~s~s~dg---------------------------------~i~vwd~ 300 (434)
+... +..+.|+ +++|++++.|+ .|++||+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 2221 3556665 66788887665 8999999
Q ss_pred CC-CeEEEEEc--cccccEEEEEE-cCCEEEEEeC-----CCcEEEEEcCCCCceEEEeeecCCc--cEEEEEeccCCCC
Q 013881 301 ET-LQCIQTLT--EHTSVVMSLLC-WDQFLLSCSL-----DKTIKVWFATDSGNLEVTYTHNEEH--GVLALCGMPDSEG 369 (434)
Q Consensus 301 ~~-~~~~~~~~--~~~~~v~~l~~-~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 369 (434)
.+ ++...... .|...+..++| ++++|++++. +..|++||+.++.....+..+.... .+..+.|+|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~- 349 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS- 349 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-
T ss_pred CCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-
Confidence 98 87655443 36677777776 3567876654 5789999998877655544433210 234567776544
Q ss_pred CcEEEEEeCCCeEEEEeCC-CCcccccc-cccCcEEEE-EecCCc-EE-EEeCCCC--CEEEEEccC
Q 013881 370 KPVLLCSCNDNSVRFYDLP-SFAERGKI-FAKQEIRAI-QLGPGG-LF-FTGDGTG--QVRVWQWCN 429 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~-~~~~~v~~~-~~spdg-~l-~s~~~dg--~i~iwd~~~ 429 (434)
++++++.|+.++||.+. ++. ...+ .+...|..+ .|+|++ .| ++++.++ .++||++..
T Consensus 350 --~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 350 --ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp --EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred --EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88888899988887765 233 3333 346678787 599999 55 5566666 899999864
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=3.5e-19 Score=182.49 Aligned_cols=294 Identities=9% Similarity=0.037 Sum_probs=196.1
Q ss_pred eEEEEEeCC-cEEEecCCCeEEEEeCCCCceEEEEecCccc---cEEEEEccCCCCEEEEEECC---------CcEEEEE
Q 013881 112 ILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSGSDKLYSGSKD---------ETVRVWD 178 (434)
Q Consensus 112 i~c~~~~~~-~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~s~s~d---------g~v~iwd 178 (434)
+..+.|+++ .+++.+.|+.|++||+.++ +....+.+|.. .|.+++|||||++|++++.+ +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 455678654 4555578899999999998 66777777765 49999999999999999875 7888999
Q ss_pred CCCCceEEEEecCCc----e--EEEEeCCCEEEEEcCCcEEEEECCCCceEEec-CCCCc------------------EE
Q 013881 179 CASGQCAGVINLGGE----V--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQ------------------VY 233 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~-~~~~~------------------v~ 233 (434)
+.+++. ..+..... + ..++++++.|+...++.|.+|++.+++...+. .+... +.
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 999876 33332211 2 33456888888888899999999988766443 22332 37
Q ss_pred EEEEeCC--EEEEEeCCC----------------------------------cEEEEEcCCCCCccccceeecC------
Q 013881 234 AMAVGND--LLFAGTQDG----------------------------------AILAWKFNVTTNCFEPAASLKG------ 271 (434)
Q Consensus 234 ~l~~~~~--~l~~g~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~------ 271 (434)
++.|+|+ .|++++.++ .|++||+.++. ....+..
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT----HDLEMMPPDDPRM 252 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC----CCEECCCCCCGGG
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc----eeEEeeCCccCCC
Confidence 8999999 777776543 79999998763 2233333
Q ss_pred ccceEEEEEECC--CEEEEec----CCCcEEEEeCCCCeEEEEEccc-cccE----EEEEEc--CCEEEE--EeCCC---
Q 013881 272 HSLAVVSLVVGA--NKLYSGS----MDNSIRVWNLETLQCIQTLTEH-TSVV----MSLLCW--DQFLLS--CSLDK--- 333 (434)
Q Consensus 272 h~~~v~~l~~~~--~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~-~~~v----~~l~~~--~~~l~s--~s~dg--- 333 (434)
+...+..+.|++ +++++.. .+..|++||+.++++...+..+ ...+ ..+.|+ ++.|+. ...++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 366788888874 4665543 3468999999999887766543 3333 266776 665654 45666
Q ss_pred ---cEEEEEcCCCCc---eEEEeeecCCccEEE-EEeccCCCCCcEEEEEeC-C--CeEEEEeCCCCc--cccccc----
Q 013881 334 ---TIKVWFATDSGN---LEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCN-D--NSVRFYDLPSFA--ERGKIF---- 397 (434)
Q Consensus 334 ---~i~vwd~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~--~~~~~~---- 397 (434)
.|.+||+.+... ...+... ...+.. +.|+|++. .|+..+. + +.++||++.... ....+.
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 407 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGN---KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLV 407 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTT---EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSS
T ss_pred ceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCC---EEEEEEcCCCCcceEEEEEeCCCCCCcceeccccc
Confidence 466677323332 3322221 122333 57777654 5655444 4 789999986532 223333
Q ss_pred ccCcEEEEEecCCc-EEEEe
Q 013881 398 AKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 398 ~~~~v~~~~~spdg-~l~s~ 416 (434)
+...+..++|+||| +|+..
T Consensus 408 ~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 408 ENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SSCCCCEEEECTTSSEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEE
Confidence 35668899999999 55543
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=6.2e-18 Score=156.18 Aligned_cols=264 Identities=9% Similarity=0.063 Sum_probs=175.9
Q ss_pred EccCCCCE-EEEEECCCcEEEEECCCCceEEEEecCCceEEEE--eCCCEEEEE-c-CCcEEEEECCCCce-E-EecCCC
Q 013881 157 TLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIG-V-TNFVKAWNTQTNTD-L-SLSGPV 229 (434)
Q Consensus 157 ~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~-~~~i~~w~~~~~~~-~-~~~~~~ 229 (434)
.|.+++++ +++.+.++.|.+||+.+++.+..+..+.....+. +++.++++. . ++.|.+||..+++. . .+..+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 45565555 6778889999999999999988887654322443 467756554 3 67999999999885 4 455555
Q ss_pred CcEEEEEEeCC--EEEEEeCCC---cEEEEEcCCCCCccccceeecCccceEEEEEECC--CEE-EEecCCCc-EEEEeC
Q 013881 230 GQVYAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKL-YSGSMDNS-IRVWNL 300 (434)
Q Consensus 230 ~~v~~l~~~~~--~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~-i~vwd~ 300 (434)
....+++|+++ +++++..++ .|.+||+.+. +.+..+..+ .....+.+++ +++ ++...++. |.+|++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN----KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT----EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCC----CeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 55555999998 677555553 8999999876 444444433 3347778864 444 45556688 999998
Q ss_pred CCCeEEE----EEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCc---eEEEeeecCCccEEEEEeccCCCCC
Q 013881 301 ETLQCIQ----TLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 301 ~~~~~~~----~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
.....+. ...........+.++ +++++++ ..++.|.+||+.+.+. +..+. .......++++|++.
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~-- 233 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGS-- 233 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSS--
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCC--
Confidence 7643321 112334557888887 5555544 4689999999988776 44333 234456777776544
Q ss_pred cEEEEE-eCCCeEEEEeCCCCcc--cccccc--------cCcEEEEEecCCc-EE-EEeCCCCCEEEEEccCCc
Q 013881 371 PVLLCS-CNDNSVRFYDLPSFAE--RGKIFA--------KQEIRAIQLGPGG-LF-FTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 371 ~~l~~~-~~dg~i~iwd~~~~~~--~~~~~~--------~~~v~~~~~spdg-~l-~s~~~dg~i~iwd~~~g~ 431 (434)
+++++ ..++.|.+||+.+++. +..+.. ......++|+||+ +| +++..++.|.+||+.+..
T Consensus 234 -~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 234 -TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp -EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred -EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 55544 4578999999998876 221111 1123568999999 65 555667899999998754
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=1.4e-18 Score=177.57 Aligned_cols=305 Identities=10% Similarity=-0.021 Sum_probs=201.9
Q ss_pred cceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCC-----Cce
Q 013881 110 TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQC 184 (434)
Q Consensus 110 ~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-----~~~ 184 (434)
..|.+++|+++..++.+.++.|++||+.++ +.. .+..+...+.+++|+|||++|+++ .|+.|++||+.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~-~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLAR-KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTT-EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCC-ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 469999998887777777899999999987 554 445577889999999999999995 679999999998 776
Q ss_pred EEEEecCCc-----------------eEEEEeCCCEEEEEc----------------------------------CCcEE
Q 013881 185 AGVINLGGE-----------------VGCMISEGPWIFIGV----------------------------------TNFVK 213 (434)
Q Consensus 185 ~~~~~~~~~-----------------~~~~~~~~~~l~~~~----------------------------------~~~i~ 213 (434)
......... ...+.+++++|+.+. +..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 654433322 233456788777653 24799
Q ss_pred EEECCCCceEEec---CCCCcEEEEEEeCC--EEEEEeCCC-----cEEEEEcCCCCCccccceeecCccc---eEEEEE
Q 013881 214 AWNTQTNTDLSLS---GPVGQVYAMAVGND--LLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSL---AVVSLV 280 (434)
Q Consensus 214 ~w~~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~---~v~~l~ 280 (434)
+||+.+++...+. .|...+..++|+|+ .|++++.++ .|++||+.++... ..+.. ..+.. .+..+.
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RTLFV-ETDKHYVEPLHPLT 316 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EEEEE-EECSSCCCCCSCCE
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eEEEE-ccCCCeECccCCce
Confidence 9999998866443 56778999999998 777777665 8999999876211 11111 11111 123455
Q ss_pred E----CCCEEEEecCCCcEEEEeCC-CCeEEEEEccccccEEE-EEEc--CCEEEEEeC-CC----cEEEEEcCCCCceE
Q 013881 281 V----GANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMS-LLCW--DQFLLSCSL-DK----TIKVWFATDSGNLE 347 (434)
Q Consensus 281 ~----~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~-l~~~--~~~l~s~s~-dg----~i~vwd~~~~~~~~ 347 (434)
| +++++++++.|+.+++|++. +++.+..+..+...+.. +.|+ ++.|+.++. ++ .|..||+.+.. ..
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~ 395 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TK 395 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CE
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ce
Confidence 5 45588889999999999886 67778888888887876 6787 556655554 44 56666766544 22
Q ss_pred EEeeecCCccEEEEEeccCCCCCcEEEEEeC-C---CeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCC--C
Q 013881 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-D---NSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTG--Q 421 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg--~ 421 (434)
.+ . ....+..++++|++. +++..+. + +.|++||+.+++ ...+.+...+....+.+...+..-..|| .
T Consensus 396 ~l-~--~~~~~~~~~~spdg~---~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 468 (706)
T 2z3z_A 396 DL-T--PESGMHRTQLSPDGS---AIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGYAMPEIRTGTIMAADGQTP 468 (706)
T ss_dssp ES-C--CSSSEEEEEECTTSS---EEEEEEECSSCSCEEEEEESSSCE-EEEEECC------CCCCEEEEEEECTTSSSE
T ss_pred ec-c--CCCceEEEEECCCCC---EEEEEecCCCCCcEEEEEECCCCe-EeeccccchhhhcCCCCcEEEEEEcCCCCEE
Confidence 22 2 234577888887654 5555433 3 569999998876 3333333344444444443233333344 4
Q ss_pred EEEEEc
Q 013881 422 VRVWQW 427 (434)
Q Consensus 422 i~iwd~ 427 (434)
+..|-+
T Consensus 469 ~~~~~~ 474 (706)
T 2z3z_A 469 LYYKLT 474 (706)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555543
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=5.8e-19 Score=180.75 Aligned_cols=312 Identities=11% Similarity=0.098 Sum_probs=203.2
Q ss_pred EEEEeCC-cEEEecCCCeEEEEeCCCCceEEEEecCccc---cEEEEEccCCCCEEEEEEC---------CCcEEEEECC
Q 013881 114 CRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSGSDKLYSGSK---------DETVRVWDCA 180 (434)
Q Consensus 114 c~~~~~~-~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~s~s~---------dg~v~iwd~~ 180 (434)
...|+++ .+++.+.|+.|++||+.++ +....+.+|.. .|.+++|||||++|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 4577655 4555667999999999998 67777766654 4999999999999999876 7899999999
Q ss_pred CCceE--EEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec--CCCCcE-----------------EEEEEeC
Q 013881 181 SGQCA--GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQV-----------------YAMAVGN 239 (434)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~--~~~~~v-----------------~~l~~~~ 239 (434)
+++.+ ..+........++++++.|+.+.++.|++|++.+++...+. ++...| .++.|+|
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 98873 22222222345567898999888999999999988766443 333323 4899999
Q ss_pred C--EEEEEeCCC----------------------------------cEEEEEcCCCCCc--ccc--ceeecCccceEEEE
Q 013881 240 D--LLFAGTQDG----------------------------------AILAWKFNVTTNC--FEP--AASLKGHSLAVVSL 279 (434)
Q Consensus 240 ~--~l~~g~~dg----------------------------------~i~vwd~~~~~~~--~~~--~~~~~~h~~~v~~l 279 (434)
+ .|++++.|. .|++||+.++... .+. ...+.+|...+..+
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 9 777776542 7889998876210 000 02244688889999
Q ss_pred EECCC--EEEEecCC----CcEEEEe----CCCCeEEEEE----ccccccEE-----EEEEc--CCEEEE--EeCCC--c
Q 013881 280 VVGAN--KLYSGSMD----NSIRVWN----LETLQCIQTL----TEHTSVVM-----SLLCW--DQFLLS--CSLDK--T 334 (434)
Q Consensus 280 ~~~~~--~l~s~s~d----g~i~vwd----~~~~~~~~~~----~~~~~~v~-----~l~~~--~~~l~s--~s~dg--~ 334 (434)
+|+++ .+++.... ..|.+|| +.++++...+ ..|...+. .+.|+ ++.|+. ...++ .
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKH 338 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEE
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceE
Confidence 99754 45553322 3488999 8887765544 35666555 66776 554443 44555 4
Q ss_pred EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC----CCeEEEEeCCC--Ccc-ccccc-----ccCcE
Q 013881 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN----DNSVRFYDLPS--FAE-RGKIF-----AKQEI 402 (434)
Q Consensus 335 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~--~~~-~~~~~-----~~~~v 402 (434)
|.+||+.+.. ...+.. ....+..+.+. +++.+++++.. ++.+++|.+.. +.. ...+. +...+
T Consensus 339 l~~~~~~~~~-~~~lt~--~~~~v~~~~~~---d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 339 IHYIKDTVEN-AIQITS--GKWEAINIFRV---TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp EEEESSCSTT-CEECSC--SSSCEEEEEEE---CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred EEEEECCCCc-eEeccc--CceEEEEEEEE---eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 6666765544 222222 22235555554 33334555544 47888888754 321 12221 34567
Q ss_pred EEEEecCCc-EEE-EeCCC--CCEEEEEccCCcc
Q 013881 403 RAIQLGPGG-LFF-TGDGT--GQVRVWQWCNGPV 432 (434)
Q Consensus 403 ~~~~~spdg-~l~-s~~~d--g~i~iwd~~~g~~ 432 (434)
..+.|+|++ +++ +++.+ ..+.+||+.+++.
T Consensus 413 ~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 413 YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp EEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 889999999 544 44443 5688999888763
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.4e-18 Score=158.89 Aligned_cols=258 Identities=12% Similarity=0.083 Sum_probs=177.6
Q ss_pred EEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC--ceEEE--EeCCCEEEEE--cCCcEEEEECCCCceE-EecC
Q 013881 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EVGCM--ISEGPWIFIG--VTNFVKAWNTQTNTDL-SLSG 227 (434)
Q Consensus 155 ~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~i~~w~~~~~~~~-~~~~ 227 (434)
.+++++++.++++++.+++|++||+.+++.+..+..+. .+..+ .+++..+++. .++.|.+||+.+++.. .+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999999998888765 34333 4466665544 3679999999988766 3332
Q ss_pred -C-----CCcEEEEEEeCC--EEEEEeCC------------CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCE
Q 013881 228 -P-----VGQVYAMAVGND--LLFAGTQD------------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK 285 (434)
Q Consensus 228 -~-----~~~v~~l~~~~~--~l~~g~~d------------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 285 (434)
+ ...+..++|+++ .|++++.+ +.|.+||+.++... +.+..+.. ...+.+++++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~-~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFPM-PRQVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEEC-CSSCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-ceeeeccC-CCcccceeECCCCc-
Confidence 2 223678899988 77777755 89999999874211 22233332 2346667775 55
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEccccc------------------------cEEEEEEcC-------------CEEEE
Q 013881 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTS------------------------VVMSLLCWD-------------QFLLS 328 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------------------~v~~l~~~~-------------~~l~s 328 (434)
+++++. .|++||+.+++.+..+..+.. ....+.+.. .++..
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 555544 499999999998887754320 122233321 01112
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEecc-CCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEe
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP-DSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQL 407 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 407 (434)
...++.+++|++. ........++++| ++. +++++ ++.|.+||+.+++.+..+.....+..++|
T Consensus 239 ~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~---~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 302 (349)
T 1jmx_B 239 DLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPN---QIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAF 302 (349)
T ss_dssp ETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTT---EEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEE
T ss_pred eccCCcEEecccc-----------cCCCcceeeEecCCCCC---EEEEE--cCeEEEEECccCeEEEEEcCCCCccceEE
Confidence 2233444444431 1233566777776 544 67766 88999999999988777766667889999
Q ss_pred cCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 408 GPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 408 spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+|++ +|++++.++.|++||+.+++++
T Consensus 303 s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 303 DKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp CSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEecCCCeEEEEecccccee
Confidence 9999 8888888999999999988754
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=2.6e-17 Score=153.13 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=168.2
Q ss_pred CCCeEEEEeCC--CCceEEE-EecCccccEEEEEccCCCCEEEEEEC---CCcEEEEECCCCceEEEEecCCceEEEEeC
Q 013881 127 KCKFLHSWTVG--DGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGGEVGCMISE 200 (434)
Q Consensus 127 ~d~~i~vwd~~--~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (434)
.++.|++|+++ ++ ++.. ....+...+..++|+||++ |++++. ++.|++||+.+++.....
T Consensus 14 ~~~~i~v~~~d~~tg-~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------ 79 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK-TLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------ 79 (347)
T ss_dssp SCCEEEEEEEETTTT-EEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE------------
T ss_pred CCCCEEEEEEcCCCC-eEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee------------
Confidence 45667777654 55 3322 3344667788899999999 665554 689999999766532110
Q ss_pred CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEEEcCCCCCccccceeecC------
Q 013881 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKG------ 271 (434)
Q Consensus 201 ~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~------ 271 (434)
.+..+...+..++|+++ .|++++ .++.|.+|++..... ...+..+..
T Consensus 80 -----------------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~~~p~ 135 (347)
T 3hfq_A 80 -----------------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-LTLTDTVQHSGHGPR 135 (347)
T ss_dssp -----------------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-EEEEEEEECCCCCSS
T ss_pred -----------------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-eeecceeecCCCCCC
Confidence 12234556778899988 666666 789999999964321 122222211
Q ss_pred ---ccceEEEEEEC--CCEEEEecCCCcEEEEeCC-CCeEE--EEEccc-cccEEEEEEc--CCEEEE-EeCCCcEEEEE
Q 013881 272 ---HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE-TLQCI--QTLTEH-TSVVMSLLCW--DQFLLS-CSLDKTIKVWF 339 (434)
Q Consensus 272 ---h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~-~~~~~--~~~~~~-~~~v~~l~~~--~~~l~s-~s~dg~i~vwd 339 (434)
+...+.+++++ ++.+++...++.|++||+. +++.. ..+..+ ......++|+ +++|++ ...++.|.+|+
T Consensus 136 ~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 136 PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 12346777775 5566677778999999998 55433 222222 2356778887 565555 55689999999
Q ss_pred cCCC-CceEEEee---ecC----CccEEEEEeccCCCCCcEE-EEEeCCCeEEEEeCCCC---cccccccc-cCcEEEEE
Q 013881 340 ATDS-GNLEVTYT---HNE----EHGVLALCGMPDSEGKPVL-LCSCNDNSVRFYDLPSF---AERGKIFA-KQEIRAIQ 406 (434)
Q Consensus 340 ~~~~-~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~---~~~~~~~~-~~~v~~~~ 406 (434)
+... ..+..... ... ......++++|++. +| ++...++.|.+|++... +.+..+.. ...+..++
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 292 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH---FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD 292 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC---EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC---EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence 8752 22222211 111 13467788877654 55 56667899999999732 33333332 44688999
Q ss_pred ecCCc-EEEEeC-CCCCEEEEEc--cCCcc
Q 013881 407 LGPGG-LFFTGD-GTGQVRVWQW--CNGPV 432 (434)
Q Consensus 407 ~spdg-~l~s~~-~dg~i~iwd~--~~g~~ 432 (434)
|+||| +|++++ .++.|.+|++ .+|++
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 99999 777765 4589999954 56665
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=8.7e-17 Score=149.62 Aligned_cols=257 Identities=11% Similarity=0.073 Sum_probs=183.9
Q ss_pred ccceEEEEEeCCc--EEEecC-------CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-ECCCcEEEEE
Q 013881 109 KTDILCRNWVQGN--CMYGEK-------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWD 178 (434)
Q Consensus 109 ~~~i~c~~~~~~~--~~~g~~-------d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd 178 (434)
...+..+.|+++. +++++. ++.|.+||..++ +.+..+.. ...+..++|+|++++++.+ ..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456788887753 444442 668999999998 77777764 3457889999999966554 5579999999
Q ss_pred CCCCceEEEEecCCc----------eEE--EEeCCCEEEEEc---CCcEEEEECCCCceEEecC-CCCcEEEEEEeCC--
Q 013881 179 CASGQCAGVINLGGE----------VGC--MISEGPWIFIGV---TNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND-- 240 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~----------~~~--~~~~~~~l~~~~---~~~i~~w~~~~~~~~~~~~-~~~~v~~l~~~~~-- 240 (434)
+.+++.+..+..+.. +.. +.+++..++++. ++.|.+||..+++...... +...+..+.|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 999999888877531 233 344777666654 6789999999988774433 6666888999988
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeec----CccceEEEEEEC--CCEEEEec-CCCcEEEEeCCCCeEEEEEcccc
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLK----GHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQTLTEHT 313 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~----~h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~ 313 (434)
.+++++.++.|.+||+.+. +....+. ++...+..+.++ ++++++++ .++.|.+||+.+++.+..+....
T Consensus 198 ~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEECCCC----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 8888899999999999876 3333333 244556667775 66665554 55999999999999988887654
Q ss_pred ccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 314 SVVMSLLCW--DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 314 ~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
. ..+.++ +++++++. .++.|.+||+.+.+.+..+... .....+++++++. +|+++..+
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~---~l~v~~~~ 334 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSLALSADGK---TLYVSVKQ 334 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEEEECTTSC---EEEEEEEC
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeEEEcCCCC---EEEEEEcc
Confidence 3 345665 66555555 6899999999887655544332 3567788876554 56555544
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=7.3e-18 Score=152.39 Aligned_cols=245 Identities=10% Similarity=0.081 Sum_probs=172.8
Q ss_pred EEECCCcEEEEECCCCceEEEEecCCceEEEE--eCCCEEEEEcCCcEEEEECCC-CceEEec-CC-CCcEEEEEEeCC-
Q 013881 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGVTNFVKAWNTQT-NTDLSLS-GP-VGQVYAMAVGND- 240 (434)
Q Consensus 167 s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~w~~~~-~~~~~~~-~~-~~~v~~l~~~~~- 240 (434)
+++.|++|++||+.+++..........+.++. +++.+++++.++.|.+||+.+ ++...+. .+ ...+.+++|+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 34678999999999998887777776666664 478889888899999999998 7766443 33 377889999998
Q ss_pred -EEEEEe--CCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCC-CeEEEEEcccc
Q 013881 241 -LLFAGT--QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLET-LQCIQTLTEHT 313 (434)
Q Consensus 241 -~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~-~~~~~~~~~~~ 313 (434)
.|++++ .++.+.+|.++.... ....+..+. .+..+.|+ +++|+ +++.++.+++|++.. ......+..+.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGG---TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCC---CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCC---ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 777777 445566665543321 123333333 37777776 45655 788899999998532 33456677788
Q ss_pred ccEEEEEEc--CCEEEEEe-CCCcEEEEEcC-CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC----------
Q 013881 314 SVVMSLLCW--DQFLLSCS-LDKTIKVWFAT-DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND---------- 379 (434)
Q Consensus 314 ~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------- 379 (434)
..+.++.|+ +++|+.++ .++.+++|++. .......+..+ ...+..+.|+|++. +|++++.+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGD---KVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECTTSS---EEEEEEEETTCCSCCSSE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECCCCC---EEEEEEcCCCCCcccccC
Confidence 889999998 56677665 59999999986 34444433332 24577788877654 77777655
Q ss_pred -CeEEEEeCCCCcccccc---cccCcEEEEEecCCc-EEEEeCCCC
Q 013881 380 -NSVRFYDLPSFAERGKI---FAKQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 380 -g~i~iwd~~~~~~~~~~---~~~~~v~~~~~spdg-~l~s~~~dg 420 (434)
+.|++||+.+++..... .+...+..++|+|++ .|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57999999987653332 346678999999999 777776543
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=2.4e-18 Score=176.29 Aligned_cols=269 Identities=9% Similarity=0.033 Sum_probs=183.9
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc----eE--EEEeCCCEEEEEcC----------CcEEEE
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE----VG--CMISEGPWIFIGVT----------NFVKAW 215 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----~~--~~~~~~~~l~~~~~----------~~i~~w 215 (434)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. +. .+.+++++|+.+.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998877 7899999999999988877765432 33 44568888877653 688999
Q ss_pred ECCCCceEEec---CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccce---------------
Q 013881 216 NTQTNTDLSLS---GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA--------------- 275 (434)
Q Consensus 216 ~~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~--------------- 275 (434)
|+.+++...+. .|...+..++|+|+ .|+.++. +.|++||+.++. .......+...
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~----~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ----AIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC----CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc----eEEEecCCCCCceECcccceeEEEEe
Confidence 99998765444 34445889999999 6776665 799999998763 33333332222
Q ss_pred ---EEEEEEC--CCEEEEecCCC----------------------------------cEEEEeCCCCeEEEEEccc----
Q 013881 276 ---VVSLVVG--ANKLYSGSMDN----------------------------------SIRVWNLETLQCIQTLTEH---- 312 (434)
Q Consensus 276 ---v~~l~~~--~~~l~s~s~dg----------------------------------~i~vwd~~~~~~~~~~~~~---- 312 (434)
+.++.|+ +++|++++.|+ .|++||+.+++....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 2567775 56888776543 7999999998876667654
Q ss_pred --cccEEEEEEc--CCEEEEEeC----CCcEEEEEcCCCCceEEEeeecCCccE----EEEEeccCCCCCcEEEE-EeCC
Q 013881 313 --TSVVMSLLCW--DQFLLSCSL----DKTIKVWFATDSGNLEVTYTHNEEHGV----LALCGMPDSEGKPVLLC-SCND 379 (434)
Q Consensus 313 --~~~v~~l~~~--~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~-~~~d 379 (434)
...+..++|+ +++|++.+. +..|++||+.+++....+..... ..+ ..+.|+|++. .+++. +..+
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~--~l~~~~~~~~ 328 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGR--KFFFIRAIPQ 328 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSC--SEEEEEEECC
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCC--eEEEEEeccc
Confidence 6678899998 556656543 35799999988765544433221 112 2567776654 34443 5567
Q ss_pred C------eEEEEe-CCCCcc--ccccc-ccCcEEE-EEecCCc-EEEEe-CCC--CCEEEEEccC
Q 013881 380 N------SVRFYD-LPSFAE--RGKIF-AKQEIRA-IQLGPGG-LFFTG-DGT--GQVRVWQWCN 429 (434)
Q Consensus 380 g------~i~iwd-~~~~~~--~~~~~-~~~~v~~-~~~spdg-~l~s~-~~d--g~i~iwd~~~ 429 (434)
+ .|.+|| ..+++. ...+. +...+.. ++|+||| .|+.. ..+ +.++||++..
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 7 577777 344441 33443 3445555 6999999 76544 444 8899999864
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=6.7e-18 Score=168.58 Aligned_cols=262 Identities=9% Similarity=-0.034 Sum_probs=174.9
Q ss_pred ccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCceEEEEecC-CceEEEEe-CCCEEEEEcC----CcEEEE--EC--
Q 013881 149 HQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVINLG-GEVGCMIS-EGPWIFIGVT----NFVKAW--NT-- 217 (434)
Q Consensus 149 h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~----~~i~~w--~~-- 217 (434)
+..+|.+++|+|||++||+++. ||+++||++.+++..+..... ..+..+.+ .+.+++++.. ....+| +.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 3568999999999999999887 999999999777665544444 24555443 2355555442 445555 44
Q ss_pred CCCceEEecCC-CCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC---
Q 013881 218 QTNTDLSLSGP-VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD--- 292 (434)
Q Consensus 218 ~~~~~~~~~~~-~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--- 292 (434)
..... .+... ...+.++.++++ .+++...++.+.+||+.++ +...... +...-..++++|++|++++.+
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g----~~~~l~~-~~~~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG----GLRELAR-LPGFGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT----EEEEEEE-ESSCEEEEEEETTEEEEEEEEETT
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC----cEEEeec-CCCceEEECCCCCEEEEEEEcCCC
Confidence 33333 33322 233444444444 4455555555669999876 2222222 222334455678899988777
Q ss_pred -CcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCC--cEEEEEcCCCCceEEEeeecCCccEEEEE-----
Q 013881 293 -NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEHGVLALC----- 362 (434)
Q Consensus 293 -g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----- 362 (434)
+.|++||+.+++.. .+..|...+..++|+ ++.|+++..++ .|++||+.+++.. .+..+. ..+..+.
T Consensus 174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~~~~~ 249 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHHHCCSEEE
T ss_pred CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhhhhhcccc
Confidence 78999999988754 677888889999998 67888888888 8999999876654 332222 2222333
Q ss_pred ---eccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCC---EEEEEcc
Q 013881 363 ---GMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQ---VRVWQWC 428 (434)
Q Consensus 363 ---~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~---i~iwd~~ 428 (434)
|+|++ .++++++.|+.+++|++ ++... .....+.+++|+ ++ .+++++.+.+ |.+|+..
T Consensus 250 ~~~~spdg---~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 250 WLGYLPDG---RLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEECTTS---CEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ceeEcCCC---cEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 66655 48999999999999999 55544 234678999999 88 7777776643 6666654
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.4e-17 Score=159.66 Aligned_cols=227 Identities=14% Similarity=0.054 Sum_probs=157.7
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEc
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV 208 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (434)
+.+++|+.... .+...++.|++++++.+|++++.|+ +++|+........ ....
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~~~~---------------- 75 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--KPGD---------------- 75 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--CTTC----------------
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc--cccc----------------
Confidence 46788875321 1345688999999999999999998 9998864221000 0000
Q ss_pred CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEE----EEeCCCcEEEEEcCCCC-------CccccceeecCccce
Q 013881 209 TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF----AGTQDGAILAWKFNVTT-------NCFEPAASLKGHSLA 275 (434)
Q Consensus 209 ~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~----~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~h~~~ 275 (434)
....+..... .....+...|.+++|+++ +|+ +|+.|+.|++||+.... ..+.....+.+|...
T Consensus 76 -~~~~~~~~~~---~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 151 (434)
T 2oit_A 76 -DPNKIVDKVQ---GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM 151 (434)
T ss_dssp -CTTCEEECCC---CEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS
T ss_pred -CcccccccCc---cccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc
Confidence 0000000000 012345678999999998 777 78899999999987541 111224566789999
Q ss_pred EEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 013881 276 VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 276 v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 350 (434)
|.+++|++ ++|++++.||+|++||+++++.+.....|...|.+++|+ +++|++|+.|+.|++||++ ......+.
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 99999974 589999999999999999998887777899999999998 7899999999999999997 43333333
Q ss_pred eecC-----CccEEEEEeccCCCCCcEEEE-EeCCC------eEEEEeCCCC
Q 013881 351 THNE-----EHGVLALCGMPDSEGKPVLLC-SCNDN------SVRFYDLPSF 390 (434)
Q Consensus 351 ~~~~-----~~~~~~~~~~~~~~~~~~l~~-~~~dg------~i~iwd~~~~ 390 (434)
.+.. ...+.+++|.++.. ++++ ...|| .+++|++.+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~---~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYV---FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTE---EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCce---EEEEEccCCCccCCCCceEEEEeccC
Confidence 3221 23688888876433 4433 33443 3899999865
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.6e-17 Score=159.26 Aligned_cols=192 Identities=14% Similarity=0.105 Sum_probs=139.7
Q ss_pred ceEEEEEeC--CcEEEecCCCeEEEEeCCCC----------ceEE-----EEecCccccEEEEEccCCCCEEE----EEE
Q 013881 111 DILCRNWVQ--GNCMYGEKCKFLHSWTVGDG----------FKLL-----TQLEGHQKVVSGITLPSGSDKLY----SGS 169 (434)
Q Consensus 111 ~i~c~~~~~--~~~~~g~~d~~i~vwd~~~~----------~~~~-----~~l~~h~~~V~~l~~s~~~~~l~----s~s 169 (434)
.+.++++++ +.+++++.++ +++|+...- .... ..+ .|...|++++|+|++++|+ +++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccC
Confidence 456677754 3455566666 888875310 0111 112 3567899999999999999 788
Q ss_pred CCCcEEEEECCCC--------ceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-
Q 013881 170 KDETVRVWDCASG--------QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND- 240 (434)
Q Consensus 170 ~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~- 240 (434)
.|++|+|||+.++ +.+.. ...+.+|...|.+++|+|+
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~~~h~~~V~~v~~~p~~ 161 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAY----------------------------------HKLLKDAGGMVIDMKWNPTV 161 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEE----------------------------------EECCCSGGGSEEEEEECSSC
T ss_pred CCceEEEEEccccccCCcCCcceeee----------------------------------eeccCCCCCceEEEEECCCC
Confidence 9999999998754 11111 1125678999999999986
Q ss_pred --EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccc----
Q 013881 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEH---- 312 (434)
Q Consensus 241 --~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---- 312 (434)
+|++++.||+|++||++.. .......+|...|.+++|+ +++|++|+.||.|++||++ ++....+..|
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~----~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTET----VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSS----EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred CCEEEEEECCCeEEEEEcCCC----cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 8999999999999999986 4445566789999999997 5689999999999999998 5666666543
Q ss_pred ---cccEEEEEEcC-CEEE-E-EeCCC------cEEEEEcCCC
Q 013881 313 ---TSVVMSLLCWD-QFLL-S-CSLDK------TIKVWFATDS 343 (434)
Q Consensus 313 ---~~~v~~l~~~~-~~l~-s-~s~dg------~i~vwd~~~~ 343 (434)
...|.++.|++ ..++ + ...|| .+++|+++..
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 23789999983 3333 2 33443 3899999865
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=7.1e-16 Score=144.27 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=176.8
Q ss_pred cCCCeEEEEeCC--CC-ceEEEEecCccccEEEEEccCCCCEEEEEECC----CcEEEEECCC--Cce--EEEEe-cCCc
Q 013881 126 EKCKFLHSWTVG--DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCAS--GQC--AGVIN-LGGE 193 (434)
Q Consensus 126 ~~d~~i~vwd~~--~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d----g~v~iwd~~~--~~~--~~~~~-~~~~ 193 (434)
+.++.|++|.+. ++ .+.+..+ |...+..++|+||+++|++++.+ +.|.+|++.. ++. +.... ....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 356788998764 44 2233333 77888899999999999999986 7999998865 433 33333 2334
Q ss_pred eEEEEeCCCEEEEEc--CCcEEEEECCCCceE----E---ec--------CCCCcEEEEEEeCC--EEE-EEeCCCcEEE
Q 013881 194 VGCMISEGPWIFIGV--TNFVKAWNTQTNTDL----S---LS--------GPVGQVYAMAVGND--LLF-AGTQDGAILA 253 (434)
Q Consensus 194 ~~~~~~~~~~l~~~~--~~~i~~w~~~~~~~~----~---~~--------~~~~~v~~l~~~~~--~l~-~g~~dg~i~v 253 (434)
...+..++.+++++. ++.+.+|++.....+ . .. .+...+.+++|+|+ .|+ +...++.|.+
T Consensus 102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 455555777777654 679999999754322 1 11 12334688999998 454 4556899999
Q ss_pred EEcCCCCC----c-ccc----ceeecCccceEEEEEEC--CCEEEEec-CCCcEEEEeCCCCeE--EEEEc---cccccE
Q 013881 254 WKFNVTTN----C-FEP----AASLKGHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQC--IQTLT---EHTSVV 316 (434)
Q Consensus 254 wd~~~~~~----~-~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~--~~~~~---~~~~~v 316 (434)
|++..... . +.. ......+......++|+ ++++++++ .++.|.+||+.+++. +..+. .+....
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence 99986532 1 111 11122334456677886 55666665 689999999987754 33332 233446
Q ss_pred EEEEEc--CCEEEEEeCC--CcEEEEEcCC-CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEe--CC
Q 013881 317 MSLLCW--DQFLLSCSLD--KTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYD--LP 388 (434)
Q Consensus 317 ~~l~~~--~~~l~s~s~d--g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd--~~ 388 (434)
..++++ +++|+++..+ +.|.+|++.. ...+..............++++|++. +|++++ .++.|.+|+ ..
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~---~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGK---YLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSC---EEEEEETTTTEEEEEEECTT
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCC---EEEEEECCCCCEEEEEEECC
Confidence 788887 6777666654 8999999962 23332222222233466788877654 677766 678999964 45
Q ss_pred CCcccccc--cccCcEEEEEec
Q 013881 389 SFAERGKI--FAKQEIRAIQLG 408 (434)
Q Consensus 389 ~~~~~~~~--~~~~~v~~~~~s 408 (434)
+++..... .+...+.++.|.
T Consensus 339 ~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 339 TGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TCCEEECSCCEECSSEEEEEEE
T ss_pred CCcEeecceeeeCCCCeEEEEc
Confidence 66554432 234568888885
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.76 E-value=6.2e-16 Score=143.04 Aligned_cols=232 Identities=9% Similarity=0.096 Sum_probs=158.1
Q ss_pred cccceEEEEEeCCc--EEEecCC-CeEEEEeCC--CC-ceEEEEecCccccEEEEEccCCCCEEEEEEC-CCcEEEEECC
Q 013881 108 IKTDILCRNWVQGN--CMYGEKC-KFLHSWTVG--DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCA 180 (434)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~~d-~~i~vwd~~--~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~ 180 (434)
+...+.+++|+++. +++++.+ +.|.+|++. ++ .+.+..+..+. .+..++|+|++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 44567788997653 5666655 899999997 44 24555666554 8899999999998877765 8899999994
Q ss_pred ---CCceEEEEecCCceEEE--EeCCCEEEEE--cCCcEEEEECCC-CceE-----Eec-CCCCcEEEEEEeCC--EE-E
Q 013881 181 ---SGQCAGVINLGGEVGCM--ISEGPWIFIG--VTNFVKAWNTQT-NTDL-----SLS-GPVGQVYAMAVGND--LL-F 243 (434)
Q Consensus 181 ---~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~i~~w~~~~-~~~~-----~~~-~~~~~v~~l~~~~~--~l-~ 243 (434)
..+.+..+.....+..+ .+++.+++++ .++.|.+|++.+ ++.. ... .....+..++|+++ .+ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence 44555555555444443 3466666654 578999999987 5442 122 23457889999998 45 4
Q ss_pred EEeCCCcEEEEEcCCCCCccccceeec----Cc--cceEEEEEEC--CCEEE-EecCCCcEEEEeCC----CCeEEEEEc
Q 013881 244 AGTQDGAILAWKFNVTTNCFEPAASLK----GH--SLAVVSLVVG--ANKLY-SGSMDNSIRVWNLE----TLQCIQTLT 310 (434)
Q Consensus 244 ~g~~dg~i~vwd~~~~~~~~~~~~~~~----~h--~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~----~~~~~~~~~ 310 (434)
++..++.|.+|++......+....... ++ ...+..++++ +++|+ +...++.|.+||+. +.+.+..+.
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence 555899999999965322112122221 11 2345677776 45665 56689999999998 345555565
Q ss_pred cccccEEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 013881 311 EHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT 341 (434)
Q Consensus 311 ~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~ 341 (434)
.+.. +..++|+ +++|++++ .++.|.+|++.
T Consensus 275 ~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 275 TETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5544 7788887 67787777 58999999664
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.75 E-value=8.1e-17 Score=160.72 Aligned_cols=258 Identities=7% Similarity=-0.026 Sum_probs=181.5
Q ss_pred ccceEEEEEeCC--cEEEecC-CCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEEC---CCcEEEEECCC
Q 013881 109 KTDILCRNWVQG--NCMYGEK-CKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSK---DETVRVWDCAS 181 (434)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~-d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~ 181 (434)
..+|.++.|+++ .+++++. |+.+.||++.++ +..+ +..|. ..|..++|+|| +++++++. +...+||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC-CcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 458999999765 3555665 999999999766 5544 44454 68999999999 78888876 45556655433
Q ss_pred ---CceEEEEecC--CceEEEEeCCC--EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCC----
Q 013881 182 ---GQCAGVINLG--GEVGCMISEGP--WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD---- 248 (434)
Q Consensus 182 ---~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d---- 248 (434)
+... .+... ....++.++++ .++.+.++.+.+||+.+++...+..+.. .++.|+|+ .|++++.+
T Consensus 98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33222 22345566664 3344556677799999988766555444 78888888 78877766
Q ss_pred CcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCC--cEEEEeCCCCeEEEEEccccccEEEEE----
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLL---- 320 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~---- 320 (434)
+.|++||+.++. ...+..|...+..++|+ ++.|+++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 175 ~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 175 VSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred eEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 789999988763 34667788888888886 56888888888 8999999998887 7777776666555
Q ss_pred ----Ec--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC---eEEEEeCCC
Q 013881 321 ----CW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN---SVRFYDLPS 389 (434)
Q Consensus 321 ----~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 389 (434)
|+ +..+++++.|+.+++|++ ++... . ....+..++++ ++ .++++++.+. .|.+||..+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~--~~~~v~~~~~s-dg---~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE---A--PQGNHGRVVLW-RG---KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET--TEEEC---C--CSSEEEEEEEE-TT---EEEEEEEETTEEEEEEEETTCC
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---c--CCCceEEEEec-CC---EEEEEEcCCCCCCeEEEEcCCC
Confidence 76 668888999999999998 32221 1 12356677776 33 3777777764 477777654
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=3.4e-15 Score=139.65 Aligned_cols=273 Identities=12% Similarity=0.103 Sum_probs=186.7
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC----------CCcEEEEECCCCceEEEEecCC----
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGG---- 192 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~---- 192 (434)
.|+.|++||..++ +.+..+..+..+ .++|+||+++|+++.. +++|.+||+.+++.+.++....
T Consensus 29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 4789999999998 788888887766 8999999999999873 6789999999999998887531
Q ss_pred -----ceEEEEeCCCEEEEEc---CCcEEEEECCCCceEEe-cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCC
Q 013881 193 -----EVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 193 -----~~~~~~~~~~~l~~~~---~~~i~~w~~~~~~~~~~-~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~ 260 (434)
.-..+.+++++|+++. ++.|.+||+.+++.+.. ...... ..+.+.|+ .+++.+.||.+.+|++....
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 2245566888888764 46899999999987644 333322 22445553 78888999999999986532
Q ss_pred Cccccc---eeecCccceE-EEEEECCCEEEEecCCCcEEEEeCCCCe--EEEEEcccc----------ccEEEEEEc--
Q 013881 261 NCFEPA---ASLKGHSLAV-VSLVVGANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHT----------SVVMSLLCW-- 322 (434)
Q Consensus 261 ~~~~~~---~~~~~h~~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~----------~~v~~l~~~-- 322 (434)
...... ..+..+..++ .....++..++..+.++.|.++|+...+ .+..+.... .....++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 111000 1111112221 1123456667777788999999997543 222221100 111113444
Q ss_pred CCEEEEEeC-----------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC-
Q 013881 323 DQFLLSCSL-----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF- 390 (434)
Q Consensus 323 ~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~- 390 (434)
++.++++.. ...|.+||+.+.+.+..+.... ...++++|++. +|++++. +.|.+||+.++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~---~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRN---LMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTT---EEEEECS-SCEEEEECSSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCC---EEEEeCC-CeEEEEECCCCc
Confidence 566665543 3489999999887666655443 67788877654 7777776 99999999999
Q ss_pred -cccccc-cccCcEEEEEecCCc
Q 013881 391 -AERGKI-FAKQEIRAIQLGPGG 411 (434)
Q Consensus 391 -~~~~~~-~~~~~v~~~~~spdg 411 (434)
+.+..+ ........++++|+|
T Consensus 337 l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 337 PKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp CEEEEEETTSCSSEEEEEECCCS
T ss_pred ceeeEEeccCCCCcEEEEecCCC
Confidence 888886 556778899999997
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=3.2e-15 Score=138.69 Aligned_cols=252 Identities=10% Similarity=0.045 Sum_probs=166.1
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEecCC-------
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGG------- 192 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~------- 192 (434)
+++++.++.|++||+.++ +.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+....
T Consensus 14 ~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~ 92 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR 92 (349)
T ss_dssp EEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred EEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence 455678999999999998 7887777553 2578899999998665 45568999999999999888877543
Q ss_pred --ceEEEEeCCCEEEEEc-------------CCcEEEEECCCCce---EEecCCCCcEEEEEEeCC-EEEEEeCCCcEEE
Q 013881 193 --EVGCMISEGPWIFIGV-------------TNFVKAWNTQTNTD---LSLSGPVGQVYAMAVGND-LLFAGTQDGAILA 253 (434)
Q Consensus 193 --~~~~~~~~~~~l~~~~-------------~~~i~~w~~~~~~~---~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~v 253 (434)
....+.+++++++++. .+.|.+||+.+++. .....+...+.+++|+++ .+++++. .|.+
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~--~i~~ 170 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP--DIYK 170 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS--SEEE
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccC--cEEE
Confidence 1234455777777765 48999999988543 223334446888999988 4444443 4999
Q ss_pred EEcCCCCCccccceeecCcc---------------------c---eEEEEEECCC-------------EEEEecCCCcEE
Q 013881 254 WKFNVTTNCFEPAASLKGHS---------------------L---AVVSLVVGAN-------------KLYSGSMDNSIR 296 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~---------------------~---~v~~l~~~~~-------------~l~s~s~dg~i~ 296 (434)
||+.++. ....+..+. . ....+.+.++ ++.....++.++
T Consensus 171 ~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
T 1jmx_B 171 MDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 246 (349)
T ss_dssp ECTTTCC----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred EeCCCCc----eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence 9998763 233332211 0 1223333311 111223334444
Q ss_pred EEeCCCCeEEEEEccccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 297 VWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
+|++ ..+...+..++++ +++++++ ++.|.+||+.+.+.+..+... ..+..+++++++. +|
T Consensus 247 ~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~---~l 309 (349)
T 1jmx_B 247 TQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGD---KL 309 (349)
T ss_dssp EEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSS---CE
T ss_pred eccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC---CCccceEECCCCC---EE
Confidence 4443 2244566677765 4577777 889999999887655544322 2355777876644 56
Q ss_pred EEEeCCCeEEEEeCCCCccccccc
Q 013881 374 LCSCNDNSVRFYDLPSFAERGKIF 397 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~~~~~ 397 (434)
++++.++.|.+||+.+++.+..+.
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEecCCCeEEEEeccccceeeeee
Confidence 667888999999999988776654
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=1.2e-14 Score=135.06 Aligned_cols=232 Identities=13% Similarity=0.165 Sum_probs=156.3
Q ss_pred cceEEEEEeCCc-EEEecC---CCeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCC-C
Q 013881 110 TDILCRNWVQGN-CMYGEK---CKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCAS-G 182 (434)
Q Consensus 110 ~~i~c~~~~~~~-~~~g~~---d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~-~ 182 (434)
.....++|+++. +++++. ++.|++|++.++. +.+..+..|...+..++|+|++++|++++ .++.|.+|++.. +
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 345668887665 444443 5899999997662 35556666788899999999999999888 689999999963 3
Q ss_pred --ceEEEEecCC----------ceE--EEEeCCCEEEEEc-CCcEEEEECC-CCceEE---ecC-CCCcEEEEEEeCC--
Q 013881 183 --QCAGVINLGG----------EVG--CMISEGPWIFIGV-TNFVKAWNTQ-TNTDLS---LSG-PVGQVYAMAVGND-- 240 (434)
Q Consensus 183 --~~~~~~~~~~----------~~~--~~~~~~~~l~~~~-~~~i~~w~~~-~~~~~~---~~~-~~~~v~~l~~~~~-- 240 (434)
+.+..+.... .+. .+.+++.++++.. ++.|.+|++. .++... ... ....+..++|+|+
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~ 199 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ 199 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC
Confidence 3333333221 133 3345677554444 6689999998 444331 122 3346788999998
Q ss_pred -EEEEEeCCCcEEEEEcCCCCCccccceeecCcc------ceEEEEEEC--CCEE-EEecCCCcEEEEeCC---CCeEEE
Q 013881 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS------LAVVSLVVG--ANKL-YSGSMDNSIRVWNLE---TLQCIQ 307 (434)
Q Consensus 241 -~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~------~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~---~~~~~~ 307 (434)
++++...++.|.+|++......+.....+.... ..+..++++ +++| ++...++.|.+||+. +.+.+.
T Consensus 200 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 200 YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE
Confidence 444567789999999986332222233332222 347777776 5566 556678999999997 335666
Q ss_pred EEccccccEEEEEEc--CCEEEEEeCC-CcEEEEEcC
Q 013881 308 TLTEHTSVVMSLLCW--DQFLLSCSLD-KTIKVWFAT 341 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~--~~~l~s~s~d-g~i~vwd~~ 341 (434)
.+..+...+..++|+ +++|++++.+ +.|.+|++.
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 666666678888888 6678887764 899999664
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.71 E-value=1.1e-15 Score=141.12 Aligned_cols=230 Identities=10% Similarity=0.067 Sum_probs=164.6
Q ss_pred eEEEEEeCCc--E-EEecCCCeEEEEeCCCCceEEEEecC-c----cccEEEEEccCCCCEEEEEE------------CC
Q 013881 112 ILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEG-H----QKVVSGITLPSGSDKLYSGS------------KD 171 (434)
Q Consensus 112 i~c~~~~~~~--~-~~g~~d~~i~vwd~~~~~~~~~~l~~-h----~~~V~~l~~s~~~~~l~s~s------------~d 171 (434)
+.++.|+++. + ++...++.|.+||+.++ +.+..+.. + ...+..++|+|++++|++++ .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 5567887654 3 34556789999999988 66666653 2 33677899999999999886 67
Q ss_pred CcEEEEECCCCceEEEEecCCceEE--EEeCCCEEEEEcCCcEEEEECCCCceEE-ecCCC--CcEEEEEEeCC--EEEE
Q 013881 172 ETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPV--GQVYAMAVGND--LLFA 244 (434)
Q Consensus 172 g~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~~w~~~~~~~~~-~~~~~--~~v~~l~~~~~--~l~~ 244 (434)
+.|.+||+.+++.+..+.....+.. +.+++.+++++ ++.|.+||+.+++... +..+. .. +.|+++ .++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEee
Confidence 9999999999998888876654443 34577777776 7899999999988763 32222 22 255555 3333
Q ss_pred Ee-CCC-----------------------cEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEE
Q 013881 245 GT-QDG-----------------------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (434)
Q Consensus 245 g~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 298 (434)
.+ .++ .|.+||+.+... . ...+..+...+..+.++ +++++++ ++.|++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~ 265 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF 265 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCc--e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence 22 222 468999887642 1 33344555667778886 5577777 7999999
Q ss_pred eCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 299 d~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
|+.+++.+..+..+ ..+.+++++ +++|++++.++.|++||+.+.+.+..+...
T Consensus 266 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 266 DLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99999988887644 456778887 678888899999999999888766655443
No 160
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=2.7e-13 Score=133.44 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=203.5
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECC--CCceEEEEecCCceEEEE-
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA--SGQCAGVINLGGEVGCMI- 198 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~- 198 (434)
+++...++.|.++|..++ +.+.++... ..+..+.|+||+++|++++.|+.|.+||+. +++.+..+..+.....+.
T Consensus 170 ~V~~~~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEeCCCCeEEEEECCCC-eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 344557899999999998 888887743 457799999999999999999999999996 888888888776655443
Q ss_pred -----eCCCEEEEEc--CCcEEEEECCCCceEEe-c--C--------C-CCcEEEEEEeCC---EEEEEeCCCcEEEEEc
Q 013881 199 -----SEGPWIFIGV--TNFVKAWNTQTNTDLSL-S--G--------P-VGQVYAMAVGND---LLFAGTQDGAILAWKF 256 (434)
Q Consensus 199 -----~~~~~l~~~~--~~~i~~w~~~~~~~~~~-~--~--------~-~~~v~~l~~~~~---~l~~g~~dg~i~vwd~ 256 (434)
+++++++++. .+.+.++|..+.+.+.. . + | ...+..+..+++ .++....+|.|.++|+
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 2677887754 68999999998877622 1 1 1 226778888776 6666778899999998
Q ss_pred CCCCCccccceeecCccceEEEEEEC--CCEEEE-ecCCCcEEEEeCCCCeEEEEEcc-----ccccEEEEEEc--CC-E
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS-GSMDNSIRVWNLETLQCIQTLTE-----HTSVVMSLLCW--DQ-F 325 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~~--~~-~ 325 (434)
..... ..+..+ ........+.|+ +++|++ ...++.|.++|+.+++.+..+.. |.+.-..+ ++ +. .
T Consensus 328 ~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 328 TDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp TCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred CCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 76531 111111 122234455565 566654 45688999999999998877754 33222223 23 23 4
Q ss_pred EEEEe-CCCcEEEEEcCC-------CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC-------CCeEEEEeCCCC
Q 013881 326 LLSCS-LDKTIKVWFATD-------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-------DNSVRFYDLPSF 390 (434)
Q Consensus 326 l~s~s-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~ 390 (434)
+++.. .++.|.++|... .+.+..+.... .....+..+|+++ ++.+... .++|.++|+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~---~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQ---YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCS---EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCC---eEEEecCCCCCcccCceEEEEECCcc
Confidence 44443 468999999887 33333333322 2223345555544 6776552 359999999876
Q ss_pred -----ccc-cccc---------ccCcEEEEEecCCc-EEEEe--C---CCCCEEEEEccCCccc
Q 013881 391 -----AER-GKIF---------AKQEIRAIQLGPGG-LFFTG--D---GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 391 -----~~~-~~~~---------~~~~v~~~~~spdg-~l~s~--~---~dg~i~iwd~~~g~~~ 433 (434)
... ..+. ....+..+.|+|+| .+..+ + .++.|.|+|.++++++
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 211 1111 24578999999999 54443 2 4799999999998764
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=2.1e-14 Score=132.55 Aligned_cols=259 Identities=14% Similarity=0.071 Sum_probs=174.5
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec--C
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--G 227 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~--~ 227 (434)
-+.|.+|+++|+++++++...++.+.+++....... .... .+. ..++.|.+||..+++..... .
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~---~~~~-------~~~----~~~~~i~~~d~~~g~~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY---QQRG-------LGP----IEEDTILVIDPNNAEILQSSGKN 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB---SCGG-------GCS----CCSCCEEEECTTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceee---cccc-------ccc----ccCCcEEEEECCCCeEEeccCCC
Confidence 367999999999999998888865444332221111 0000 000 02456666776666554322 3
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee---------cCccceEEEEEECC---CEEEEec-CC
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL---------KGHSLAVVSLVVGA---NKLYSGS-MD 292 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~---~~l~s~s-~d 292 (434)
+......++++++ ++++...++.|++|+..... ..+..+ ..+......+++++ +++++.+ .+
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 4567889999987 77778888999999986542 123333 23444678888874 3556665 68
Q ss_pred CcEEEEeCCCCeEEEEEcccc----------ccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEE
Q 013881 293 NSIRVWNLETLQCIQTLTEHT----------SVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359 (434)
Q Consensus 293 g~i~vwd~~~~~~~~~~~~~~----------~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 359 (434)
+.|++|| .+++.+..+.... .....++++ +.++++...++.|++||..+++.+..+........+.
T Consensus 166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 9999999 6677777775322 337888886 3455666678899999998676666554444445567
Q ss_pred EEEeccCCCCCcEEEEE-------eCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCc-EEEEeCCCCCEEEEEc
Q 013881 360 ALCGMPDSEGKPVLLCS-------CNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~-------~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~ 427 (434)
.+++.| +.++.+. ..+..|++|++.+++.+..+. +...+..|+++|+| ++++...++.|++|++
T Consensus 245 ~~~~~p----g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 245 AISYIP----GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEET----TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eeeecC----CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 777776 1123322 234589999999998887763 45668999999999 8899999999999998
Q ss_pred cCC
Q 013881 428 CNG 430 (434)
Q Consensus 428 ~~g 430 (434)
...
T Consensus 321 ~~~ 323 (329)
T 3fvz_A 321 TEK 323 (329)
T ss_dssp EEC
T ss_pred Ccc
Confidence 753
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=8.5e-15 Score=138.14 Aligned_cols=286 Identities=11% Similarity=0.023 Sum_probs=181.3
Q ss_pred EEeCCCCceEEEEecCccccEEE-----EEccCCCCEEEEEEC-CC--cEEEEECCCCceEEEEecCCce---EEEEeCC
Q 013881 133 SWTVGDGFKLLTQLEGHQKVVSG-----ITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV---GCMISEG 201 (434)
Q Consensus 133 vwd~~~~~~~~~~l~~h~~~V~~-----l~~s~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~ 201 (434)
.++..++ ..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++........... ..+.+++
T Consensus 14 ~~~~~~g-~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTG-AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCC-cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 3466677 777888888877776 889999999999887 67 4888999998877665544322 2456678
Q ss_pred CEEEEEc-CCcEEEEECCCCceEE-ecCCCCcEEEEEE--eCC--EEEE----------------------EeCCCcEEE
Q 013881 202 PWIFIGV-TNFVKAWNTQTNTDLS-LSGPVGQVYAMAV--GND--LLFA----------------------GTQDGAILA 253 (434)
Q Consensus 202 ~~l~~~~-~~~i~~w~~~~~~~~~-~~~~~~~v~~l~~--~~~--~l~~----------------------g~~dg~i~v 253 (434)
+.|+... +..|.+||+.+++... ...+...+....+ +++ .++. ...+..|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 7777655 6689999999988763 3444454544433 566 4442 224477999
Q ss_pred EEcCCCCCccccceeecCccceEEEEEECC---CEEEEecC------CCcEEEEeCCCCeEEEEEcccc--ccEEEEEEc
Q 013881 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSM------DNSIRVWNLETLQCIQTLTEHT--SVVMSLLCW 322 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~~ 322 (434)
||+.++. ...+..+...+..+.|++ +.|+.... ...|.++|+..++. ..+..+. ..+..+.|+
T Consensus 173 ~d~~~g~-----~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 173 VDLKTGE-----STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EETTTCC-----EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC
T ss_pred EECCCCc-----eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceEC
Confidence 9988763 233334555677777765 45665554 33788888876543 4444444 357777887
Q ss_pred --CCEEEEEeC-CC----cEEEEEcCCCCceEEEeeecCCccE----EEEEeccCCCCCcEEEEE---------eCCCeE
Q 013881 323 --DQFLLSCSL-DK----TIKVWFATDSGNLEVTYTHNEEHGV----LALCGMPDSEGKPVLLCS---------CNDNSV 382 (434)
Q Consensus 323 --~~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~---------~~dg~i 382 (434)
++.|+..+. ++ .|++||+.+++...... ....... ....|+|++. .|+.. ..+..|
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGS---DAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEEC---CC------------CCCCEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCC---cceeEeeeccccccCCCCEE
Confidence 566655443 22 39999998776432222 1110000 0114555544 34432 456799
Q ss_pred EEEeCCCCcccccccccC-----------cEEEEEecCCc-EEE-EeCCCCCEEEEEccC
Q 013881 383 RFYDLPSFAERGKIFAKQ-----------EIRAIQLGPGG-LFF-TGDGTGQVRVWQWCN 429 (434)
Q Consensus 383 ~iwd~~~~~~~~~~~~~~-----------~v~~~~~spdg-~l~-s~~~dg~i~iwd~~~ 429 (434)
++||+.+++......+.. .+..++|+||| .|+ ++..+|...||.+.-
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 999999876543333333 47888999999 555 455678777776653
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=5.1e-15 Score=138.76 Aligned_cols=262 Identities=9% Similarity=0.068 Sum_probs=162.9
Q ss_pred CeEEEEeC--CCCceE--EEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECC-CCceEEEEecCCceEEEEeCCC
Q 013881 129 KFLHSWTV--GDGFKL--LTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGVINLGGEVGCMISEGP 202 (434)
Q Consensus 129 ~~i~vwd~--~~~~~~--~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (434)
+.|++|++ .++ ++ +.... ++...+..++|+|++++|++++.+ .|.+|++. +++.......
T Consensus 14 ~~i~~~~~d~~~g-~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------ 79 (365)
T 1jof_A 14 GAIFTVQFDDEKL-TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------ 79 (365)
T ss_dssp CEEEEEEEETTTT-EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------
T ss_pred CcEEEEEEECCCC-CEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------
Confidence 56777765 455 33 22221 244578899999999999999988 89999987 6665432210
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--E--EEEEe-------------CCCcEEEEEcCCCCCcccc
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L--LFAGT-------------QDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~--l~~g~-------------~dg~i~vwd~~~~~~~~~~ 265 (434)
..+ +.+..++|+|+ . ++++. .++.+.+|++.........
T Consensus 80 -----------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~ 135 (365)
T 1jof_A 80 -----------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN 135 (365)
T ss_dssp -----------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE
T ss_pred -----------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce
Confidence 000 11223566666 2 33432 6899999999743211111
Q ss_pred ceeec-CccceEEEEEEC--CCEEEEec-CCCcEEEEeCC-CCeEE--EEEc--cccccEEEEEEc--CCEEEEEeC-CC
Q 013881 266 AASLK-GHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLE-TLQCI--QTLT--EHTSVVMSLLCW--DQFLLSCSL-DK 333 (434)
Q Consensus 266 ~~~~~-~h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~-~~~~~--~~~~--~~~~~v~~l~~~--~~~l~s~s~-dg 333 (434)
+..+. .+...+.++.++ +++++++. .++.|++||+. +++.. ..+. .|...+..++|+ +++|++++. ++
T Consensus 136 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 136 VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 11111 244567788886 55777654 46899999998 67653 3343 235668888888 567877765 78
Q ss_pred cEEEEEcCC--CCce---EEEeeecCC----c-------cEEEEE-eccCCCCCcEEEEEeC-CC-----eEEEEeCC-C
Q 013881 334 TIKVWFATD--SGNL---EVTYTHNEE----H-------GVLALC-GMPDSEGKPVLLCSCN-DN-----SVRFYDLP-S 389 (434)
Q Consensus 334 ~i~vwd~~~--~~~~---~~~~~~~~~----~-------~~~~~~-~~~~~~~~~~l~~~~~-dg-----~i~iwd~~-~ 389 (434)
.|.+|++.. +... ..+...... . ....++ ++|++. +|+++.. ++ .|.+|++. +
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---YMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---EEEEEEEESSTTSCCEEEEEEECTT
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---EEEEECCCCCCCCCCeEEEEEECCC
Confidence 999998763 3221 112221111 1 467788 877654 6666553 23 89999996 5
Q ss_pred Cccccc---cc-ccCcEEEEEecC---Cc-EEEEeCC-CCCEEEEEccCCc
Q 013881 390 FAERGK---IF-AKQEIRAIQLGP---GG-LFFTGDG-TGQVRVWQWCNGP 431 (434)
Q Consensus 390 ~~~~~~---~~-~~~~v~~~~~sp---dg-~l~s~~~-dg~i~iwd~~~g~ 431 (434)
++.... .. +...+..++|+| || +|++++. ++.|.+|++..+.
T Consensus 293 g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 554321 22 234567789999 78 8888776 5899999997653
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=4.4e-15 Score=152.34 Aligned_cols=311 Identities=8% Similarity=0.031 Sum_probs=192.4
Q ss_pred eEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc-----EEEEEccCCCCEEEEEECC---------CcEEEE
Q 013881 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-----VSGITLPSGSDKLYSGSKD---------ETVRVW 177 (434)
Q Consensus 112 i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~-----V~~l~~s~~~~~l~s~s~d---------g~v~iw 177 (434)
...+.|+++..++.+.|+.|++||+.++ +....+.+|... ...++||||+++|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCC-ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4468898775444444999999999998 667778887643 2347889999999999886 566799
Q ss_pred ECCCCceEEEEecCCceE--EEEeCCCEEEEEcCCcEEEEECCCCceEEec--CCCCcE-----------------EEEE
Q 013881 178 DCASGQCAGVINLGGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQV-----------------YAMA 236 (434)
Q Consensus 178 d~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~--~~~~~v-----------------~~l~ 236 (434)
|+.+++..........+. .++++++.|+...++.|.+|+..++....+. ++...+ ..+.
T Consensus 98 d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 999998654333333333 3456888888889999999999988765443 333333 2488
Q ss_pred EeCC--EEEEEeCCC------------------------------------cEEEEEcCC---CCCccccceeec-----
Q 013881 237 VGND--LLFAGTQDG------------------------------------AILAWKFNV---TTNCFEPAASLK----- 270 (434)
Q Consensus 237 ~~~~--~l~~g~~dg------------------------------------~i~vwd~~~---~~~~~~~~~~~~----- 270 (434)
|+|| .|+.++.|. .|++||+.+ +... ....+.
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~--~~~~l~~~~~~ 255 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA--TSIQITAPASM 255 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC--CEEEECCCHHH
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc--eEEEecCCccC
Confidence 9999 666654321 477788876 4210 111222
Q ss_pred -CccceEEEEEEC--CCEEEEe----cCCCcEEEEeCCCCe----EE--EEE--ccccccEE-----EEEEc--CCEEE-
Q 013881 271 -GHSLAVVSLVVG--ANKLYSG----SMDNSIRVWNLETLQ----CI--QTL--TEHTSVVM-----SLLCW--DQFLL- 327 (434)
Q Consensus 271 -~h~~~v~~l~~~--~~~l~s~----s~dg~i~vwd~~~~~----~~--~~~--~~~~~~v~-----~l~~~--~~~l~- 327 (434)
+|...+..++|+ ++.++.. ..+..|++||+.+++ +. ..+ ..|...+. ...|+ ++.|+
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEE
Confidence 367778888885 4444443 234479999999887 22 222 33544433 56666 56665
Q ss_pred EEeC-C--CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC----CC--eEEEEeCCCCccccccc-
Q 013881 328 SCSL-D--KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN----DN--SVRFYDLPSFAERGKIF- 397 (434)
Q Consensus 328 s~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg--~i~iwd~~~~~~~~~~~- 397 (434)
..+. + ..|++||+........... ...+..+.. ++ ++.+++++.. .+ .|+..++..+.....+.
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~~lT~g---~~~v~~~~~-~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCTFITKG---TWEVIGIEA-LT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCEESCCS---SSCEEEEEE-EC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEcCCCceEEEEEECCCCceEecccC---CEEEEEEEE-Ee--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 5554 3 4588888876544332222 223443332 33 3445555544 23 45555555543321222
Q ss_pred ----ccCcEEEEEecCCc-EEE-EeCC--CCCEEEEEccCCc
Q 013881 398 ----AKQEIRAIQLGPGG-LFF-TGDG--TGQVRVWQWCNGP 431 (434)
Q Consensus 398 ----~~~~v~~~~~spdg-~l~-s~~~--dg~i~iwd~~~g~ 431 (434)
....+..+.|+|++ +++ +.+. -..+.+++..+++
T Consensus 410 ~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 13568899999999 544 3333 2467788877664
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=1.4e-13 Score=124.17 Aligned_cols=241 Identities=9% Similarity=0.104 Sum_probs=161.5
Q ss_pred cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec
Q 013881 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 147 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~ 226 (434)
.+|-..+.+|+++++++++++...++.|.+||.. ++.+..+.... ...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------------------------------~~~ 73 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------------------KRD 73 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------------------SST
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-------------------------------CCc
Confidence 3566789999999999988888889999999987 55444332100 012
Q ss_pred CCCCcEEEEEEe-CC-EEEEEeC--CCcEEEEEcCCCCCccccceeec-CccceEEEEEEC--CCEEEEecCCCcEEEEe
Q 013881 227 GPVGQVYAMAVG-ND-LLFAGTQ--DGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 227 ~~~~~v~~l~~~-~~-~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd 299 (434)
.+...+..+++. ++ .|+++.. ++.|.+||.. + +....+. .+...+..++++ ++.+++...++.|.+||
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-C----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEc
Confidence 344567888984 44 5554443 8899999943 3 2233332 234567788886 55677777789999999
Q ss_pred CCCCeEEEEEc--cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE
Q 013881 300 LETLQCIQTLT--EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (434)
Q Consensus 300 ~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (434)
.. ++.+..+. .+...+..++++ ++++++...++.|++||.. ...+..+...........+++.+++ .++++
T Consensus 149 ~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G---~l~v~ 223 (286)
T 1q7f_A 149 QN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG---EILIA 223 (286)
T ss_dssp TT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC---CEEEE
T ss_pred CC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC---CEEEE
Confidence 64 56666664 344567889988 4566666678999999974 3333333222112356777776654 37777
Q ss_pred EeCCC-eEEEEeCCCCcccccccc---cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 376 SCNDN-SVRFYDLPSFAERGKIFA---KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 376 ~~~dg-~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
...++ .|.+||.. ++.+..+.. ...+.+++++|+| ++++ +.|++|++|++....
T Consensus 224 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 224 DNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 76675 99999964 454444432 2347899999999 6666 579999999987654
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=1.2e-13 Score=129.13 Aligned_cols=271 Identities=11% Similarity=0.129 Sum_probs=164.2
Q ss_pred cCCCCEEEEEE----CCCcEEEEEC--CCCceEEEEe-cCCce--EEEEeCCCEEEEEcC-----CcEEEEECCC--Cce
Q 013881 159 PSGSDKLYSGS----KDETVRVWDC--ASGQCAGVIN-LGGEV--GCMISEGPWIFIGVT-----NFVKAWNTQT--NTD 222 (434)
Q Consensus 159 s~~~~~l~s~s----~dg~v~iwd~--~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~-----~~i~~w~~~~--~~~ 222 (434)
.+...+++.|+ .++.|.+|++ .+++...... ....+ ..+.+++++|+++.. +.+.+|++.. ++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 33445566664 3567888866 4554433222 22222 344567887877654 6999998765 433
Q ss_pred E---EecCCCCcEEEEEEeCCEEEEEe-CCCcEEEEEcCCCCCcccccee--ec--------CccceEEEEEEC--CCEE
Q 013881 223 L---SLSGPVGQVYAMAVGNDLLFAGT-QDGAILAWKFNVTTNCFEPAAS--LK--------GHSLAVVSLVVG--ANKL 286 (434)
Q Consensus 223 ~---~~~~~~~~v~~l~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~--~~--------~h~~~v~~l~~~--~~~l 286 (434)
. ....+......+++....|++++ .++.|.+|++............ .. .+...+.++.++ ++++
T Consensus 90 ~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred EEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2 23335567778888444555554 6889999999754321111111 11 112234667775 5555
Q ss_pred E-EecCCCcEEEEeCCCCe-------E------EEEEccccccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceEE-
Q 013881 287 Y-SGSMDNSIRVWNLETLQ-------C------IQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFATDSGNLEV- 348 (434)
Q Consensus 287 ~-s~s~dg~i~vwd~~~~~-------~------~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~- 348 (434)
+ +...++.|++|++.... . ......+......++|+ ++++++++ .++.|.+||+.++.....
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 4 45568999999887533 1 11122344556788888 56777776 689999999985532111
Q ss_pred -Eeeec-CCccEEEEEeccCCCCCcEEEEEeC--CCeEEEEeCC--CCc--ccccccccCcEEEEEecCCc-EEEEeC-C
Q 013881 349 -TYTHN-EEHGVLALCGMPDSEGKPVLLCSCN--DNSVRFYDLP--SFA--ERGKIFAKQEIRAIQLGPGG-LFFTGD-G 418 (434)
Q Consensus 349 -~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~v~~~~~spdg-~l~s~~-~ 418 (434)
..... .......++++|++. +|+++.. ++.|.+|++. +++ .+..+.....+..++|+||| +|++++ .
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~---~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGK---YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSS---EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred EEecCCCCCCCcccEEECCCCC---EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence 11111 113356788877654 6655554 5899999996 333 33333334567899999999 777766 7
Q ss_pred CCCEEEEEcc--CCcc
Q 013881 419 TGQVRVWQWC--NGPV 432 (434)
Q Consensus 419 dg~i~iwd~~--~g~~ 432 (434)
++.|.+|++. +|++
T Consensus 327 ~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 327 TNVIQIFERDQATGLL 342 (361)
T ss_dssp TTEEEEEEECTTTCCE
T ss_pred CCCEEEEEEECCCCcE
Confidence 7999997654 6654
No 167
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.66 E-value=2.4e-13 Score=127.79 Aligned_cols=295 Identities=11% Similarity=0.059 Sum_probs=195.5
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCc---------cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH---------QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h---------~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
..+.+++++.++.|+.+|..++ +.+..+... ...+.+. ...++..++.++.++.|..+|..+++.+..+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 4677888888999999999998 666555532 1223221 1224567888999999999999999998887
Q ss_pred ecCCceEE--EEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcE------EEEEEeCCEEEEEeCCCcEEEEEcCCCC
Q 013881 189 NLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV------YAMAVGNDLLFAGTQDGAILAWKFNVTT 260 (434)
Q Consensus 189 ~~~~~~~~--~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v------~~l~~~~~~l~~g~~dg~i~vwd~~~~~ 260 (434)
.....+.. +..++.+++...++.|..+|..+++.+-.......+ .......+.+++++.++.|..+|..++.
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence 76644321 233444444456889999999998876222222221 2233445688889999999999998874
Q ss_pred CccccceeecCcc--c---------eEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEE
Q 013881 261 NCFEPAASLKGHS--L---------AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC 329 (434)
Q Consensus 261 ~~~~~~~~~~~h~--~---------~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~ 329 (434)
.. ....... . ........++.++.++.++.|..+|.++++.+..... .....+...++.++.+
T Consensus 210 ~~----w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~ 283 (376)
T 3q7m_A 210 MI----WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLV 283 (376)
T ss_dssp EE----EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEE
T ss_pred EE----EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEE
Confidence 32 2221110 0 0011123467888888999999999999998876653 3345666678899999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEec
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLG 408 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s 408 (434)
+.++.|..+|..+++.+......... ........ . ..|++++.+|.|+++|..+++.+..... ...+......
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~--~---~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVLY--N---GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEEE--T---TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCC-cccCCEEE--C---CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 99999999999888765443311111 11111111 2 2688888999999999999988766543 2333221111
Q ss_pred CCcEEEEeCCCCCEEEEE
Q 013881 409 PGGLFFTGDGTGQVRVWQ 426 (434)
Q Consensus 409 pdg~l~s~~~dg~i~iwd 426 (434)
.++.|+.++.+|.|+.|+
T Consensus 358 ~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTEEEEEBTTSCEEEEE
T ss_pred ECCEEEEEeCCCEEEEEe
Confidence 255888899999999987
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=2.4e-14 Score=146.94 Aligned_cols=268 Identities=9% Similarity=0.053 Sum_probs=172.8
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc------e--EEEEeCCCEEEEEcC----------CcE
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE------V--GCMISEGPWIFIGVT----------NFV 212 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~----------~~i 212 (434)
.....++|+||+++|+++ |++|++||+.++++...+..+.. . ..++++++.|+.+.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345678999999999986 99999999999998777665431 2 455678888887664 677
Q ss_pred EEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE--------------
Q 013881 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV-------------- 276 (434)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-------------- 276 (434)
.+||+.+++...+..+...+...+|+|+ .|+.+ .++.|++|++.++.. ...+..++...+
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce---EEEcCCCCccceecCcccccccchhc
Confidence 8999999998888888889999999999 56655 578999999887632 111122222222
Q ss_pred ---EEEEE--CCCEEEEecCCC------------------------------------cEEEEeCCC---Ce--EEEEEc
Q 013881 277 ---VSLVV--GANKLYSGSMDN------------------------------------SIRVWNLET---LQ--CIQTLT 310 (434)
Q Consensus 277 ---~~l~~--~~~~l~s~s~dg------------------------------------~i~vwd~~~---~~--~~~~~~ 310 (434)
..+.| +|++|+.++.|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 12455 466777664221 588999998 73 233343
Q ss_pred ------cccccEEEEEEc--CCEEEEEeC----CCcEEEEEcCCCC----c--eEEEeeecCCccE-----EEEEeccCC
Q 013881 311 ------EHTSVVMSLLCW--DQFLLSCSL----DKTIKVWFATDSG----N--LEVTYTHNEEHGV-----LALCGMPDS 367 (434)
Q Consensus 311 ------~~~~~v~~l~~~--~~~l~s~s~----dg~i~vwd~~~~~----~--~~~~~~~~~~~~~-----~~~~~~~~~ 367 (434)
+|...+..++|+ ++.++.... +..|++||+.+++ + ...+........+ ....|+|++
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 377788899988 554554432 3479999998876 1 2222111121122 245676655
Q ss_pred CCCcEEE-EEe-CC--CeEEEEeCCCCcccccccccCcEEEEE-ecCCc-EEEEeCC----CCCEEEEEcc
Q 013881 368 EGKPVLL-CSC-ND--NSVRFYDLPSFAERGKIFAKQEIRAIQ-LGPGG-LFFTGDG----TGQVRVWQWC 428 (434)
Q Consensus 368 ~~~~~l~-~~~-~d--g~i~iwd~~~~~~~~~~~~~~~v~~~~-~spdg-~l~s~~~----dg~i~iwd~~ 428 (434)
. .|+ ..+ .+ ..|++||+.+++........-.+..+. ++ ++ .++++.. .+..+||.+.
T Consensus 331 ~---~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 331 N---SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp S---EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred C---EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEE
Confidence 4 444 554 33 468889998776655444555666654 44 34 5555555 3455555543
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=153.02 Aligned_cols=267 Identities=9% Similarity=-0.008 Sum_probs=168.9
Q ss_pred EEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC------ceEEEEeCCCEEEEEc----------CCcEEEEECC
Q 013881 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG------EVGCMISEGPWIFIGV----------TNFVKAWNTQ 218 (434)
Q Consensus 155 ~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~----------~~~i~~w~~~ 218 (434)
+++|+||+++++ .+.|++|++||+.+++....+.... ....+++++++|+.+. ++.|.+||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 678999996555 4569999999999999887776542 2334556888887654 3799999999
Q ss_pred CCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE-----------------EEE
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV-----------------VSL 279 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-----------------~~l 279 (434)
+++..........+..++|+|+ .|+.+. ++.|++|++.++... .....++...+ .++
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEcccccceeeeecccCcccE
Confidence 9877211222356888999999 666654 789999999876321 11112222212 356
Q ss_pred EEC--CCEEEEecCCC----------------------------------cEEEEeCCCCeEE--------EEEcccccc
Q 013881 280 VVG--ANKLYSGSMDN----------------------------------SIRVWNLETLQCI--------QTLTEHTSV 315 (434)
Q Consensus 280 ~~~--~~~l~s~s~dg----------------------------------~i~vwd~~~~~~~--------~~~~~~~~~ 315 (434)
.|+ +++|++++.|. .|++||+.+++.+ ..+..|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 665 66888877552 7899999988753 123457888
Q ss_pred EEEEEEc--CCEEEEEeCC----CcEEEEE----cCCCCceEEEe--eecCCccEE-----EEEeccCCCCCcEEE-EEe
Q 013881 316 VMSLLCW--DQFLLSCSLD----KTIKVWF----ATDSGNLEVTY--THNEEHGVL-----ALCGMPDSEGKPVLL-CSC 377 (434)
Q Consensus 316 v~~l~~~--~~~l~s~s~d----g~i~vwd----~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~l~-~~~ 377 (434)
+..++|+ ++++++.... ..|.+|| +.+++....+. .......+. .+.|+|++. .+++ ++.
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~ 332 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI--SYYKIFSD 332 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS--CEEEEEEC
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC--eEEEEEEc
Confidence 9999998 3345553322 2488899 65544332221 011112222 556776544 2333 344
Q ss_pred CCC--eEEEEeCCCCcccccccccCcEEEEEecCCc-EE-EEeCC----CCCEEEEEccC
Q 013881 378 NDN--SVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LF-FTGDG----TGQVRVWQWCN 429 (434)
Q Consensus 378 ~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l-~s~~~----dg~i~iwd~~~ 429 (434)
.++ .|.+||+.+++......+...+..+.++ ++ .| +++.. ++.+++|.+..
T Consensus 333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 555 5777888776643333345567777777 66 44 44544 58899998864
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=4.7e-14 Score=131.88 Aligned_cols=264 Identities=12% Similarity=0.071 Sum_probs=170.7
Q ss_pred CCCEEEEEE------CCCcEEEEECCCCceEEEEecCCce-EEEEeCCCEEEEEc-----------CCcEEEEECCCCce
Q 013881 161 GSDKLYSGS------KDETVRVWDCASGQCAGVINLGGEV-GCMISEGPWIFIGV-----------TNFVKAWNTQTNTD 222 (434)
Q Consensus 161 ~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------~~~i~~w~~~~~~~ 222 (434)
++++++... .|+.|.+||..+++.+..+..+... ..+.+++++++++. ++.|.+||..+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 566666654 3679999999999998888766444 23345788888864 45799999998776
Q ss_pred E-EecC------CCCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCcccccee-ecCccceEEEEEEC-CCEEEEe
Q 013881 223 L-SLSG------PVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAAS-LKGHSLAVVSLVVG-ANKLYSG 289 (434)
Q Consensus 223 ~-~~~~------~~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~~-~~~l~s~ 289 (434)
. .+.. +......++++++ +|+++.. ++.|.+||+.+. +.+.. +......-..+..+ +..+++.
T Consensus 94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~----~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG----DYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT----EEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC----cEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 5 2221 1234567889988 7777653 689999999886 44444 33211111112223 2578888
Q ss_pred cCCCcEEEEeCCC-CeEEEEE------ccccccEE-EEEEcCCEEEEEeCCCcEEEEEcCCCCceEEE-ee-ec-----C
Q 013881 290 SMDNSIRVWNLET-LQCIQTL------TEHTSVVM-SLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT-YT-HN-----E 354 (434)
Q Consensus 290 s~dg~i~vwd~~~-~~~~~~~------~~~~~~v~-~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~-~~-----~ 354 (434)
+.||.+.+|++.. ++..... ..+..++. .....+..++..+.++.|.++|+......... .. .. .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 9999999999865 5544221 11222221 11233566777788999999998754422111 00 00 0
Q ss_pred ---CccEEEEEeccCCCCCcEEEEEeC-----------CCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCC
Q 013881 355 ---EHGVLALCGMPDSEGKPVLLCSCN-----------DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 355 ---~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
......++++++.. .++++.. .+.|.+||+.+++.+..+.... +..++|+||| +|++++.
T Consensus 250 ~~~p~g~~~~a~~~dg~---~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASG---RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp TCEECCSSCEEEETTTT---EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred ccccCCeeEEEEecCCC---eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 00111145555433 4444332 3589999999999998887766 9999999999 8888877
Q ss_pred CCEEEEEccCC--ccc
Q 013881 420 GQVRVWQWCNG--PVA 433 (434)
Q Consensus 420 g~i~iwd~~~g--~~~ 433 (434)
+.|.+||..++ +++
T Consensus 325 ~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLL 340 (361)
T ss_dssp SCEEEEECSSSSCEEE
T ss_pred CeEEEEECCCCcceee
Confidence 99999999999 643
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=1.3e-13 Score=129.88 Aligned_cols=265 Identities=12% Similarity=-0.008 Sum_probs=168.8
Q ss_pred EEEeCCc--EEEecC-CC--eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 115 RNWVQGN--CMYGEK-CK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 115 ~~~~~~~--~~~g~~-d~--~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
..|+++. +++.+. ++ .|.+||+.++ +......+|...+..++|+||++.|+.++.++.|++||+.+++....+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 4576553 555554 55 5899999988 7777777777777678899999999999999999999999998877766
Q ss_pred cCCceE----E-EEeCCCEEEEE-----------------------cCCcEEEEECCCCceEEecCCCCcEEEEEEeC-C
Q 013881 190 LGGEVG----C-MISEGPWIFIG-----------------------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D 240 (434)
Q Consensus 190 ~~~~~~----~-~~~~~~~l~~~-----------------------~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~-~ 240 (434)
.+.... . ...++.+++.. .+..|.+||+.+++...+..+...+..+.|+| +
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence 554422 1 13466666532 23579999999998887777788899999999 7
Q ss_pred --EEEEEeCC------CcEEEEEcCCCCCccccceeecCcc--ceEEEEEEC--CCEEEEec-CCC----cEEEEeCCCC
Q 013881 241 --LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVG--ANKLYSGS-MDN----SIRVWNLETL 303 (434)
Q Consensus 241 --~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~--~~v~~l~~~--~~~l~s~s-~dg----~i~vwd~~~~ 303 (434)
.|+....+ ..|.++|..... ...+..+. ..+..+.|+ ++.|+..+ .++ .|++||+.++
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 55555543 378888876542 23333333 356677775 55554433 222 3999999988
Q ss_pred eEE--EEEccccccE-----EEEEEcCCEEEEE---------eCCCcEEEEEcCCCCceEEEeeecCC---------ccE
Q 013881 304 QCI--QTLTEHTSVV-----MSLLCWDQFLLSC---------SLDKTIKVWFATDSGNLEVTYTHNEE---------HGV 358 (434)
Q Consensus 304 ~~~--~~~~~~~~~v-----~~l~~~~~~l~s~---------s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~ 358 (434)
+.. ..+..+.... ..++.+++.|+.. ..+..|++||+.++.. ..+..+... ..+
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 353 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTH 353 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTC
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCC
Confidence 743 3333311110 1344456666643 4567899999987543 333333220 024
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
..++|+|++. .+++++..++...||.+.
T Consensus 354 ~~~~~spDg~--~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 354 PHPSFTPDDK--QILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCEECTTSS--EEEEEECTTSSCEEEEEE
T ss_pred CCccCCCCCC--EEEEEecCCCceeEEEEE
Confidence 5567776544 344455457766666543
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=9.4e-13 Score=121.36 Aligned_cols=252 Identities=12% Similarity=0.035 Sum_probs=168.3
Q ss_pred CCCcEEEEECCCCceEEEEe-------cCCceEEEEeCCCEEEE-E-cCCcEEEEECCCCceEEecCCCCcEEEEEEeCC
Q 013881 170 KDETVRVWDCASGQCAGVIN-------LGGEVGCMISEGPWIFI-G-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (434)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~-~-~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~ 240 (434)
.+++|.++|.++++....+. .......+...+..+++ . .++.|.+||..+++.+...........++++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD 94 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC
Confidence 37899999999998766542 22334444444444444 3 367999999999988643344567889999665
Q ss_pred -EEEEEe-CCCcEEEEEcCCCCCccccceeecCcc-----ceEEEEEECCCEEEEec--CCCcEEEEeCCCCeEEEEEcc
Q 013881 241 -LLFAGT-QDGAILAWKFNVTTNCFEPAASLKGHS-----LAVVSLVVGANKLYSGS--MDNSIRVWNLETLQCIQTLTE 311 (434)
Q Consensus 241 -~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~ 311 (434)
.++++. .++.|.+||..+. +....+.... .....+.++++.++++. .++.|.++|+.+++.+..+..
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~----~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTY----EITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTT----EEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEECCCCeEEEEECCCC----eEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 666655 8999999999876 3333332211 13344555667666665 489999999999998888765
Q ss_pred ccccEEEEEEc--CCEEEEEeCC----------CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 312 HTSVVMSLLCW--DQFLLSCSLD----------KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
.. ....+.++ +++++++..+ +.|.++|..+.+....+... .......+++.|+.. .|+++..
T Consensus 171 g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~---~lyv~~~- 244 (328)
T 3dsm_A 171 GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRD---TLYWINN- 244 (328)
T ss_dssp SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSC---EEEEESS-
T ss_pred CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCC---EEEEEcc-
Confidence 33 23456666 4455544443 78999999877544443322 122466788876544 6666544
Q ss_pred CeEEEEeCCCCcccccc-cc--cCcEEEEEecC-Cc-EEEEe----CCCCCEEEEEccCCccc
Q 013881 380 NSVRFYDLPSFAERGKI-FA--KQEIRAIQLGP-GG-LFFTG----DGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 380 g~i~iwd~~~~~~~~~~-~~--~~~v~~~~~sp-dg-~l~s~----~~dg~i~iwd~~~g~~~ 433 (434)
.|.+||+.+++..... .. ......++++| ++ ++++. ..++.|.+||.. |+++
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 8999999988764322 11 35689999999 45 66666 678999999998 7654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=4.2e-13 Score=135.88 Aligned_cols=281 Identities=7% Similarity=-0.061 Sum_probs=176.6
Q ss_pred ccccccceEEEEEeCCcEEEec----CCCeEEEEeCCCCceEEEEecCccccEE---------EEEcc--CCCCE-EEEE
Q 013881 105 RAVIKTDILCRNWVQGNCMYGE----KCKFLHSWTVGDGFKLLTQLEGHQKVVS---------GITLP--SGSDK-LYSG 168 (434)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~----~d~~i~vwd~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~~~-l~s~ 168 (434)
...|...+....|+++.++..+ .++...||....+ ...+.+..|...|. ...|+ ||+++ |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 3456678888999988766644 4788999986544 34566777776666 56565 99998 7765
Q ss_pred EC-CCcEEEEECC--C-CceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC-----CCCcEEEEEEeC
Q 013881 169 SK-DETVRVWDCA--S-GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG-----PVGQVYAMAVGN 239 (434)
Q Consensus 169 s~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~-----~~~~v~~l~~~~ 239 (434)
+. +..|.+|++. . ++.. .+.. |...+..++|+|
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~--------------------------------------~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPR--------------------------------------PLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCE--------------------------------------ECSCCCCSTTCEEEEEEEEET
T ss_pred ECCCCeEEEEcCCCCCCCCCE--------------------------------------eccCCccCCCCccccCcEECC
Confidence 54 4556666655 2 3221 1233 566788999999
Q ss_pred C--EEEEEeCC----------CcEEEEEcCCCC----Cccccceeec-CccceEEEEEEC--CCEEEEecCC--------
Q 013881 240 D--LLFAGTQD----------GAILAWKFNVTT----NCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMD-------- 292 (434)
Q Consensus 240 ~--~l~~g~~d----------g~i~vwd~~~~~----~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~d-------- 292 (434)
+ .|++++.+ ..|++||+.... . . ...+. .+...+..+.|+ +++|+.++.+
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS--A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 8 77777766 589999998720 0 2 22333 445566666665 6688777644
Q ss_pred CcEEEEeCC-CC---eEEEEEccccccEEEEEEc--CCEEEEEeCCC--cEEEEEcCCCCceEEEeeecCCc-------c
Q 013881 293 NSIRVWNLE-TL---QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEH-------G 357 (434)
Q Consensus 293 g~i~vwd~~-~~---~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~-------~ 357 (434)
..|++||+. ++ +.......|...+..+.|+ +++++++..++ .|.+||+.+++. ..+....... .
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTT
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce-eecccccccccCcccccc
Confidence 379999999 57 4444444557889999997 56777777788 555555544432 2222221111 0
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCeEEEE--eCCCCcccccccccCcEEEE-EecCCc-EEEEeCCCCC--EEEEEccCCc
Q 013881 358 VLALCGMPDSEGKPVLLCSCNDNSVRFY--DLPSFAERGKIFAKQEIRAI-QLGPGG-LFFTGDGTGQ--VRVWQWCNGP 431 (434)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~v~~~-~~spdg-~l~s~~~dg~--i~iwd~~~g~ 431 (434)
+..+.++++ +.+++++.. +.++|| |+.+++......+...+..+ +++++. .+++++.+.. |.+||+.+++
T Consensus 296 ~~~~~~~~~---~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 296 MRWFAPLAN---GLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CCSEEECTT---SCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CceEeEeCC---CEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 234555443 348888888 999998 66655533222345567777 666555 5555666654 5555665665
Q ss_pred c
Q 013881 432 V 432 (434)
Q Consensus 432 ~ 432 (434)
+
T Consensus 372 ~ 372 (662)
T 3azo_A 372 A 372 (662)
T ss_dssp E
T ss_pred e
Confidence 3
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=7.1e-14 Score=131.99 Aligned_cols=285 Identities=8% Similarity=-0.057 Sum_probs=172.8
Q ss_pred EEEeCCCCceEEEEecCcccc-----EEEEEccCCCCEEEEEECC---CcEEEEECCCCceEEEEecCCce---EEEEeC
Q 013881 132 HSWTVGDGFKLLTQLEGHQKV-----VSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEV---GCMISE 200 (434)
Q Consensus 132 ~vwd~~~~~~~~~~l~~h~~~-----V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~---~~~~~~ 200 (434)
...|..++ +.+..+..+... +..++|+|||++|+..... ..|.+||+.+++........... ..+.++
T Consensus 13 ~~~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 34477777 666777665444 7788999999998877653 36889999988765543333222 334567
Q ss_pred CCEEEE-EcCCcEEEEECCCCceEEecC-CCCcEEE---E----------------EEeCC--EEEEE-----eCCCcEE
Q 013881 201 GPWIFI-GVTNFVKAWNTQTNTDLSLSG-PVGQVYA---M----------------AVGND--LLFAG-----TQDGAIL 252 (434)
Q Consensus 201 ~~~l~~-~~~~~i~~w~~~~~~~~~~~~-~~~~v~~---l----------------~~~~~--~l~~g-----~~dg~i~ 252 (434)
+..|+. ..++.|.+|++.+++...+.. +...... + .++|+ .++.. ..+..|+
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 777755 556689999999887654332 3332222 1 23333 22211 4566899
Q ss_pred EEEcCCCCCccccceeecCccceEEEEEECC---CEEEEecCC------CcEEEEeCCCCeEEEEEccc--cccEEEEEE
Q 013881 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD------NSIRVWNLETLQCIQTLTEH--TSVVMSLLC 321 (434)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~--~~~v~~l~~ 321 (434)
+||+.++. . ..+..+...+..+.|++ +.|+..+.+ ..|.+||+..++.. .+..+ ...+..+.|
T Consensus 172 ~~d~~~g~----~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 172 KVDIETGE----L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFW 245 (396)
T ss_dssp EEETTTCC----E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEE
T ss_pred EEECCCCc----E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEE
Confidence 99988753 2 22224556677777765 345554433 46899998765533 33333 235777888
Q ss_pred c--CCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEecc-CCCCCcEEEEEe----------------
Q 013881 322 W--DQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP-DSEGKPVLLCSC---------------- 377 (434)
Q Consensus 322 ~--~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~---------------- 377 (434)
+ +++|+..+.+ +.|++||+.++..... ..... .. ..|++ ++. ++++++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~---~~-~~~s~~dg~---~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP---CS-HLMSNFDGS---LMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS---EE-EEEECSSSS---EEEEEECCC----------CCC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC---CC-CCccCCCCc---eEEEecCCcceeeccccccccC
Confidence 7 5667766544 4499999977654332 22221 22 66665 443 666544
Q ss_pred CCCeEEEEeCCCCcccccccccC-----------cEEEEEecCCc-EEEEeC-CCCCEEEEE--ccCCc
Q 013881 378 NDNSVRFYDLPSFAERGKIFAKQ-----------EIRAIQLGPGG-LFFTGD-GTGQVRVWQ--WCNGP 431 (434)
Q Consensus 378 ~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~spdg-~l~s~~-~dg~i~iwd--~~~g~ 431 (434)
.+..|++||+.+++......+.. .+..++|+||| .|+..+ .++...||. +.+++
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 34789999998876533222332 25667899999 665554 456655555 44544
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=2.1e-12 Score=118.95 Aligned_cols=270 Identities=10% Similarity=-0.017 Sum_probs=177.7
Q ss_pred ecCCCeEEEEeCCCCceEEEEec------CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLE------GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~------~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 198 (434)
++.++.|.++|.+++ +....+. ........+++. +++++++...++.|.+||..+++.+.++........+.
T Consensus 13 g~~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~ 90 (328)
T 3dsm_A 13 QYSNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIH 90 (328)
T ss_dssp TSCCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred CCCCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence 445889999999998 6555431 122446778774 44555666668999999999999999887655555554
Q ss_pred --eCCCEEEEEc--CCcEEEEECCCCceEE-ecCCC-----CcEEEEEEeCCEEEEEe--CCCcEEEEEcCCCCCccccc
Q 013881 199 --SEGPWIFIGV--TNFVKAWNTQTNTDLS-LSGPV-----GQVYAMAVGNDLLFAGT--QDGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 199 --~~~~~l~~~~--~~~i~~w~~~~~~~~~-~~~~~-----~~v~~l~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~ 266 (434)
.++ .++++. ++.|.+||..+++... +.... .....+++....|+++. .++.|.++|+.+. +..
T Consensus 91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~----~~~ 165 (328)
T 3dsm_A 91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD----KVV 165 (328)
T ss_dssp EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT----EEE
T ss_pred EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC----eEE
Confidence 355 555544 7899999999988662 22211 14556667666655555 4899999999876 333
Q ss_pred eeecCccceEEEEEEC--CCEEEEecCC----------CcEEEEeCCCCeEEEEEccc-cccEEEEEEc--CCEEEEEeC
Q 013881 267 ASLKGHSLAVVSLVVG--ANKLYSGSMD----------NSIRVWNLETLQCIQTLTEH-TSVVMSLLCW--DQFLLSCSL 331 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~--~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~--~~~l~s~s~ 331 (434)
..+... .....+.++ ++++++...+ +.|.++|..+++....+... ......++++ ++.|+++..
T Consensus 166 ~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 166 DELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 333322 123455555 4455555444 78999999999988777543 2357888888 567777654
Q ss_pred CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEE----eCCCeEEEEeCCCCcccccccccCcEEEEEe
Q 013881 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSFAERGKIFAKQEIRAIQL 407 (434)
Q Consensus 332 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 407 (434)
.|.+||..+.+................+++.|+ ++.++++. ..++.|.+||.. ++.+..+........++|
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~--~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN--NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT--TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCC--CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 999999987654221111111234667777653 33366666 578999999998 888777765545555555
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=2.4e-12 Score=119.39 Aligned_cols=235 Identities=6% Similarity=0.036 Sum_probs=156.9
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC---C--cEEEEECCCCceEEEEecCCceEEEE--eC
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---E--TVRVWDCASGQCAGVINLGGEVGCMI--SE 200 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~--~~ 200 (434)
++.|++||+.++ +.. .+ ..+..++|+|||++|+..+.+ + .|.+||+.+++......... +..+. ++
T Consensus 42 ~~~l~~~d~~~~-~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNN-ARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTC-CEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred cceEEEEeCCCC-ceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence 568999999987 432 33 568899999999999988754 2 48888999887766655544 55443 36
Q ss_pred CCEEEEEc-C---------------------------CcEEEEECCCCce-EEecCCCCcEEEEEEeCC-EEEEEeCCC-
Q 013881 201 GPWIFIGV-T---------------------------NFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND-LLFAGTQDG- 249 (434)
Q Consensus 201 ~~~l~~~~-~---------------------------~~i~~w~~~~~~~-~~~~~~~~~v~~l~~~~~-~l~~g~~dg- 249 (434)
+..|+... + ..|.+|++.+++. ..+.. . .+..+.|+|+ +++++..+.
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~ 192 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI 192 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc
Confidence 77666543 2 4688999998877 44444 3 7788999999 666665542
Q ss_pred ------cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC--------CcEEEEeCCCCeEEEEEcccccc
Q 013881 250 ------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD--------NSIRVWNLETLQCIQTLTEHTSV 315 (434)
Q Consensus 250 ------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~ 315 (434)
...+|.+..+ + ...+..+ ..+..++.++++|+.++.+ ..|.+|| +++.......+...
T Consensus 193 ~~~~~~~~~l~~~d~~----~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~ 264 (347)
T 2gop_A 193 IPQYFKFWDIYIWEDG----K-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRG 264 (347)
T ss_dssp SCCSSCCEEEEEEETT----E-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSE
T ss_pred cccccccccEEEeCCC----c-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcc
Confidence 3455554422 2 2223333 4555667788877766643 4688888 66655545556677
Q ss_pred EEE-EEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeE-EEEeCC
Q 013881 316 VMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV-RFYDLP 388 (434)
Q Consensus 316 v~~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~ 388 (434)
+.. +.|++.++++++.++.++|| +.+ +....+... ...+..+.+++ .++++++.++.. .||.+.
T Consensus 265 ~~~~~~~sdg~~~~~~~~~~~~l~-~~~-g~~~~~~~~--~~~v~~~~~s~-----~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 265 VGQAKIKDGKVYFTLFEEGSVNLY-IWD-GEIKPIAKG--RHWIMGFDVDE-----IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEE-EES-SSEEEEECS--SSEEEEEEESS-----SEEEEEECSSSCCEEEEES
T ss_pred cCCccEEcCcEEEEEecCCcEEEE-EcC-CceEEEecC--CCeEEeeeeeC-----cEEEEEcCCCChHHheEeC
Confidence 775 77873378888999999999 874 344433333 44677788776 267777766654 677665
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=1.1e-11 Score=111.71 Aligned_cols=234 Identities=11% Similarity=0.156 Sum_probs=156.7
Q ss_pred ccceEEEEEeCC-cEEEe-cCCCeEEEEeCCCCceEEEEec------CccccEEEEEc-cCCCCEEEEEEC-CCcEEEEE
Q 013881 109 KTDILCRNWVQG-NCMYG-EKCKFLHSWTVGDGFKLLTQLE------GHQKVVSGITL-PSGSDKLYSGSK-DETVRVWD 178 (434)
Q Consensus 109 ~~~i~c~~~~~~-~~~~g-~~d~~i~vwd~~~~~~~~~~l~------~h~~~V~~l~~-s~~~~~l~s~s~-dg~v~iwd 178 (434)
-....++++.++ .++.+ ..++.|.+||.. + +.+..+. +|...+..+++ .++++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 345677888654 45444 578899999987 4 4555553 35567899999 567776666543 78999999
Q ss_pred CCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEc
Q 013881 179 CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~ 256 (434)
.+++.+..+. ..+...+..++++++ ++++...++.|.+||.
T Consensus 107 -~~g~~~~~~~------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 149 (286)
T 1q7f_A 107 -QYGQFVRKFG------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ 149 (286)
T ss_dssp -TTSCEEEEEC------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred -CCCcEEEEec------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence 5566554331 123356788888877 6666677889999986
Q ss_pred CCCCCccccceeec--CccceEEEEEECC--CEEEEecCCCcEEEEeCCCCeEEEEEccc--cccEEEEEEc--CCEEEE
Q 013881 257 NVTTNCFEPAASLK--GHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEH--TSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 257 ~~~~~~~~~~~~~~--~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~~--~~~l~s 328 (434)
... ....+. .+...+..+++++ +.+++...++.|++||. +++.+..+..+ ...+..++++ ++++++
T Consensus 150 ~g~-----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 150 NGN-----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA 223 (286)
T ss_dssp TSC-----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred CCC-----EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE
Confidence 532 222332 3445678888874 45666677899999997 45666666543 3567888887 566666
Q ss_pred EeCCC-cEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 329 CSLDK-TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 329 ~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
...++ .|.+||. +++.+..+...........+++.+++ +++++ +.|+.|++|++....+
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g---~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG---SVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT---EEEEE-ETTTEEEEEECSCCCC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC---cEEEE-CCCCeEEEEEcccccc
Confidence 66675 9999995 34445544443333346677777644 35555 6799999999876443
No 178
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=3.1e-11 Score=112.94 Aligned_cols=260 Identities=11% Similarity=0.009 Sum_probs=168.2
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE----------CCCcEEEEECCCCceEEEEecCCceEEEEe
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGGEVGCMIS 199 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 199 (434)
.|.++|..++ +.+..+.....+ .++++||+++|+.+. .++.|.+||..+.+.+..+.......
T Consensus 48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~---- 120 (373)
T 2mad_H 48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR---- 120 (373)
T ss_pred EEEEEECCCC-eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc----
Confidence 7899999998 788888765555 899999999999886 36789999999888877654321000
Q ss_pred CCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCcccccee-ecCccc
Q 013881 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAAS-LKGHSL 274 (434)
Q Consensus 200 ~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~~~~~~~-~~~h~~ 274 (434)
. .+......+.++|+ +|+++.. ++.|.++| .+. +.+.. +.. ..
T Consensus 121 -------------------------~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~----~~~~~~i~~-~~ 168 (373)
T 2mad_H 121 -------------------------F-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG----SSDDQLLSS-PT 168 (373)
T ss_pred -------------------------c-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC----CEEeEEcCC-Cc
Confidence 0 00122347788887 6666653 57899999 776 33444 322 12
Q ss_pred eEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEc-----cccccE-EEEEE--cCCEEEEEeCCCcEEEEEcCCCCc
Q 013881 275 AVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLT-----EHTSVV-MSLLC--WDQFLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 275 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~v-~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~ 345 (434)
.+ .+... +..+++.+.||.+.++|. +++.+.... ....++ ....+ .+..++..+..+.+.+.|+.....
T Consensus 169 ~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~ 246 (373)
T 2mad_H 169 CY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred eE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc
Confidence 22 23333 456778889999999999 877764322 111221 11222 244444444788999999865432
Q ss_pred e--EEEeeec--------CCccEEEEEeccCCCCCcEEEEEeC----------CCeEEEEeCCCCcccccccccCcEEEE
Q 013881 346 L--EVTYTHN--------EEHGVLALCGMPDSEGKPVLLCSCN----------DNSVRFYDLPSFAERGKIFAKQEIRAI 405 (434)
Q Consensus 346 ~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~ 405 (434)
. ..+.... .......+.++++.. .+++... .+.|.++|+.+++.+..+........+
T Consensus 247 ~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~---~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i 323 (373)
T 2mad_H 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD---GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAI 323 (373)
T ss_pred eEeeeeeecCCcccccceecCceEeEEECCCCC---EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeE
Confidence 1 1111000 011222345554433 4444332 368999999999999888777788999
Q ss_pred EecCCc--EEEEeC-CCCCEEEEEccCCccc
Q 013881 406 QLGPGG--LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 406 ~~spdg--~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
+|+||| +++++. .++.|.+||+.+++++
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999 566666 5899999999998865
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=4.6e-13 Score=136.39 Aligned_cols=242 Identities=8% Similarity=0.009 Sum_probs=156.5
Q ss_pred CccccEEEEEccCCCCEEE-----EEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 148 GHQKVVSGITLPSGSDKLY-----SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~-----s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+|...+..++|||||++|| +|+.+.+|++||+.+++.+...
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------------------- 163 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---------------------------------- 163 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc----------------------------------
Confidence 4666899999999999998 4444568999999988753100
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCc-------------EEEEEcCCCCCccccceeecCccceEEEEEEC--CCE
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGA-------------ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK 285 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~-------------i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 285 (434)
.+... ....++|+++ .|+.++.|.. |++|++.++......+.....|...+..+.++ +++
T Consensus 164 -~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 164 -VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp -CBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC
T ss_pred -ccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE
Confidence 01111 1146889888 7777777665 99999987642112333444555677777776 567
Q ss_pred EEEecCCC----cEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeC----CCcEEEEEcCCCCc--eEEEeeecC
Q 013881 286 LYSGSMDN----SIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSL----DKTIKVWFATDSGN--LEVTYTHNE 354 (434)
Q Consensus 286 l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~----dg~i~vwd~~~~~~--~~~~~~~~~ 354 (434)
|+..+.++ .|++||..+++ ...+..+...+....+. ++ |+..+. ++.|.+||+.+... ...+..+..
T Consensus 241 l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 241 LFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 77666555 78888776654 34444454444444444 55 555443 58899999877653 234444332
Q ss_pred CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC-CCccccccc--ccCcEEEEEecCCc-EEE----EeCCCCCEEEEE
Q 013881 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP-SFAERGKIF--AKQEIRAIQLGPGG-LFF----TGDGTGQVRVWQ 426 (434)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~spdg-~l~----s~~~dg~i~iwd 426 (434)
...+..+.+. ++.++++...|+..+||.+. +++....+. ....+..++++|++ .|+ +....++|++||
T Consensus 319 ~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 319 SASLLSVSIV----GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp SCEEEEEEEE----TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 3445666664 33488888899988887654 344333333 25667888999998 665 334568899999
Q ss_pred ccCCcc
Q 013881 427 WCNGPV 432 (434)
Q Consensus 427 ~~~g~~ 432 (434)
+.+++.
T Consensus 395 ~~~g~~ 400 (695)
T 2bkl_A 395 VSTGKS 400 (695)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 988764
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2e-12 Score=131.94 Aligned_cols=243 Identities=9% Similarity=-0.016 Sum_probs=158.7
Q ss_pred CccccEEEEEccCCCCEEEEEECCC-----cEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+|...+..++|||||++||.++.++ +|++||+.+++.+....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------------- 168 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------------- 168 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence 3555789999999999998776543 89999999887654211
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCc----------------EEEEEcCCCCCccccceeecCccceEEEEEEC--
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGA----------------ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-- 282 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-- 282 (434)
. ...+..++|+|+ .|+.++.++. |++|++.++......+.....|...+..+.++
T Consensus 169 ---~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 243 (710)
T 2xdw_A 169 ---E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD 243 (710)
T ss_dssp ---E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred ---c--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC
Confidence 0 111346788877 6666666655 99999987632111222333355556677775
Q ss_pred CCEEEEecC-----CCcEEEEeCCC------Ce-EEEEEccccccEEE-EEEcCCEEEEEeCC----CcEEEEEcCCCC-
Q 013881 283 ANKLYSGSM-----DNSIRVWNLET------LQ-CIQTLTEHTSVVMS-LLCWDQFLLSCSLD----KTIKVWFATDSG- 344 (434)
Q Consensus 283 ~~~l~s~s~-----dg~i~vwd~~~------~~-~~~~~~~~~~~v~~-l~~~~~~l~s~s~d----g~i~vwd~~~~~- 344 (434)
+++|+..+. +..|++||+.+ ++ ....+..+...+.. +..+++.|+..+.+ ..|.+||+.+..
T Consensus 244 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 244 GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 567666543 67899999986 43 45666666555443 33447777766653 359999998764
Q ss_pred -ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe--EEEEeCCCCccccccc-ccCcEEEEEecCCc-EEE-Ee--
Q 013881 345 -NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS--VRFYDLPSFAERGKIF-AKQEIRAIQLGPGG-LFF-TG-- 416 (434)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~-s~-- 416 (434)
....+..+.....+..+.+.+ ++.++++...|+. |.+|++.+++.+..+. +...+..+.++|++ .|+ +.
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~---~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVR---SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEET---TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred ccceeccCCCCCCeEEEEEEEc---CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence 234444443333466676653 3347888888884 6667876676544443 35678899999988 554 22
Q ss_pred -CCCCCEEEEEccCCc
Q 013881 417 -DGTGQVRVWQWCNGP 431 (434)
Q Consensus 417 -~~dg~i~iwd~~~g~ 431 (434)
...++|++||+.+++
T Consensus 401 ~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 401 FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCc
Confidence 346899999999877
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=2e-12 Score=121.95 Aligned_cols=268 Identities=10% Similarity=0.006 Sum_probs=158.2
Q ss_pred eEEEEEeCCc--EEEec---CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 112 ILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 112 i~c~~~~~~~--~~~g~---~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
+....|+++. +++.. .+..|++||+.++ +......++......+.|+||+++|+.++.++.|++||+.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC-cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 3344565543 33332 2347899999887 5544444333333347899999999999999999999999988766
Q ss_pred EEecCCceE-E---E------------------EeCCCEEEE------EcCCcEEEEECCCCceEEecCCCCcEEEEEEe
Q 013881 187 VINLGGEVG-C---M------------------ISEGPWIFI------GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG 238 (434)
Q Consensus 187 ~~~~~~~~~-~---~------------------~~~~~~l~~------~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~ 238 (434)
......... . + .+++..++. ..+..|.+||+.+++...+..+...+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 665433211 0 1 112222222 23447899999998877666777889999999
Q ss_pred C-C--EEEEEeCC------CcEEEEEcCCCCCccccceeecCc--cceEEEEEEC--CCEEEEecCC-----CcEEEEeC
Q 013881 239 N-D--LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGH--SLAVVSLVVG--ANKLYSGSMD-----NSIRVWNL 300 (434)
Q Consensus 239 ~-~--~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h--~~~v~~l~~~--~~~l~s~s~d-----g~i~vwd~ 300 (434)
| + .|+..+.+ ..|.+||+.... ...+..+ ...+..+.|+ +++|+.++.+ +.|++||+
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 9 5 45554443 368888876542 1222222 2356677776 5566655433 44999999
Q ss_pred CCCeEEEEEccccccEEEEEE---cCCEEEEEe----------------CCCcEEEEEcCCCCceEEEeeecCCc-----
Q 013881 301 ETLQCIQTLTEHTSVVMSLLC---WDQFLLSCS----------------LDKTIKVWFATDSGNLEVTYTHNEEH----- 356 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~l~~---~~~~l~s~s----------------~dg~i~vwd~~~~~~~~~~~~~~~~~----- 356 (434)
.+++........ . .. +.| +++++++++ .+..|++||+.++... .+..+....
T Consensus 272 ~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~ 347 (396)
T 3c5m_A 272 ETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDG 347 (396)
T ss_dssp TTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTT
T ss_pred CCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccc
Confidence 987654332211 1 11 444 466777654 3478999999776543 333322210
Q ss_pred ----cEEEEEeccCCCCCcEEEEEe-CCCe--EEEEeCCCCcc
Q 013881 357 ----GVLALCGMPDSEGKPVLLCSC-NDNS--VRFYDLPSFAE 392 (434)
Q Consensus 357 ----~~~~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~ 392 (434)
....+.|+|++. .|+..+ .++. |.++++.++..
T Consensus 348 ~~~~~~~~~~~s~dg~---~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 348 DRQITHPHPSFTPNDD---GVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCCCCCceEccCCC---eEEEEecCCCCceEEEEEEccccc
Confidence 133455665533 455444 4554 44455555443
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=8.6e-12 Score=114.95 Aligned_cols=247 Identities=10% Similarity=0.064 Sum_probs=158.0
Q ss_pred ecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEE
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (434)
.+.++.++.| .+ +....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus 23 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---------------- 82 (333)
T 2dg1_A 23 IISESELQTI---TA-EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---------------- 82 (333)
T ss_dssp CCCGGGSCEE---EC-EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE----------------
T ss_pred EeecccCccc---cc-ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe----------------
Confidence 3567778888 33 566777778888899999999998888888999999999887654321
Q ss_pred EEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCC----CcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD----GAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 205 ~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
..+...+.+++++++ ++++...+ +.|.+||...... ........+...+..
T Consensus 83 ---------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 83 ---------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL--QDIIEDLSTAYCIDD 139 (333)
T ss_dssp ---------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC--EEEECSSSSCCCEEE
T ss_pred ---------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE--EEEEccCccCCcccc
Confidence 124467889999887 55555555 6899999876532 101111123456788
Q ss_pred EEEC--CCEEEEecC------CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEE-EEeCCCcEEEEEcCCC-Cce
Q 013881 279 LVVG--ANKLYSGSM------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDS-GNL 346 (434)
Q Consensus 279 l~~~--~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~-~~~ 346 (434)
+.++ ++.+++... .+.|..+|..+++... +..+...+..++++ ++.|+ +.+.++.|.+||+.+. ..+
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 8886 445555443 3567777776555433 32334456788887 45554 4456789999999743 323
Q ss_pred EEE-----eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccC-------cEEEEEecCCc-EE
Q 013881 347 EVT-----YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQ-------EIRAIQLGPGG-LF 413 (434)
Q Consensus 347 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~v~~~~~spdg-~l 413 (434)
..+ ...........+++.+++ .++++...++.|.+||.. ++.+..+.... .+.+++|+||+ .|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDSDD---NLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTC---CEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred ccccceEEEecCCCCCCCceEECCCC---CEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 211 111111245566665543 366666678899999984 55544443221 58899999997 66
Q ss_pred EEeCCC
Q 013881 414 FTGDGT 419 (434)
Q Consensus 414 ~s~~~d 419 (434)
+.++.+
T Consensus 295 ~v~~~~ 300 (333)
T 2dg1_A 295 IICSND 300 (333)
T ss_dssp EEEEEC
T ss_pred EEEeCc
Confidence 555444
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.53 E-value=6.2e-12 Score=116.55 Aligned_cols=256 Identities=9% Similarity=0.048 Sum_probs=159.0
Q ss_pred ccEEEEEccCCCCEEEEEE---------CCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcC----C--cEEEE
Q 013881 151 KVVSGITLPSGSDKLYSGS---------KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT----N--FVKAW 215 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~i~~w 215 (434)
..+..+++ ||++|+... .++.|.+||+.+++.... .......+.+++..|+.... + .|.+|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 45667777 888877642 257899999998875433 12222344557877766432 3 48888
Q ss_pred ECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC---------------------------CCcEEEEEcCCCCCccccc
Q 013881 216 NTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---------------------------DGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~---------------------------dg~i~vwd~~~~~~~~~~~ 266 (434)
++.+++...+..+.. +..+.|+|+ .|+.++. ...|++||+.++ +.+
T Consensus 91 ~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----~~~ 165 (347)
T 2gop_A 91 DLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----EVI 165 (347)
T ss_dssp ETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT----EEE
T ss_pred ECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----eEE
Confidence 998887765555445 999999988 5665543 257889998776 221
Q ss_pred eeecCccceEEEEEECCC-EEEEecCCC-------cEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCC------
Q 013881 267 ASLKGHSLAVVSLVVGAN-KLYSGSMDN-------SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLD------ 332 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~~~-~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~d------ 332 (434)
..+.. . .+..+.|+++ .++++..+. ...||.+.+++. ..+..+ ..+..++.++++|+.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~ 241 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMS 241 (347)
T ss_dssp EEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCC
T ss_pred eeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeECCCCCEEEEEEccccCCcc
Confidence 22222 2 5566666544 666665432 334443335544 444444 5666666668888877754
Q ss_pred --CcEEEEEcCCCCceEEEeeecCCccEEE-EEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecC
Q 013881 333 --KTIKVWFATDSGNLEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGP 409 (434)
Q Consensus 333 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 409 (434)
..|.+|| ++ ....+.. .....+.. +.|+ ++ ++++++.++.++|| +.+++......+...|.+++|+|
T Consensus 242 ~~~~l~~~d--~~-~~~~l~~-~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 242 EHNKLYIYD--GK-EVMGILD-EVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp SSCEEEEEC--SS-CEEESST-TCCSEEEEEEEET----TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred ccceEEEEC--CC-ceEeccc-cCCcccCCccEEc----Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 3577777 33 2222221 22234544 5664 23 78888999999999 87655544444567899999999
Q ss_pred CcEEEEeCCCCCE-EEEEccCCc
Q 013881 410 GGLFFTGDGTGQV-RVWQWCNGP 431 (434)
Q Consensus 410 dg~l~s~~~dg~i-~iwd~~~g~ 431 (434)
..+++++.++.. .||.+. |+
T Consensus 312 -~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 312 -IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp -SEEEEEECSSSCCEEEEES-SS
T ss_pred -cEEEEEcCCCChHHheEeC-Cc
Confidence 855565555554 788776 54
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=2.6e-10 Score=102.89 Aligned_cols=271 Identities=11% Similarity=0.086 Sum_probs=172.1
Q ss_pred cceEEEEEeC-CcEEEecC-CCeEEEEeCCCCceEEE-EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 110 TDILCRNWVQ-GNCMYGEK-CKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 110 ~~i~c~~~~~-~~~~~g~~-d~~i~vwd~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
..+.++++.+ +.++.+.. ++.|.+||.. + +... .+..+...+.+|++++++.++++...++.|..||.. ++. .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~ 90 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-G-KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-K 90 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-E
Confidence 4678888854 45666665 6899999988 5 3322 333456789999999999988887778889999876 332 1
Q ss_pred EEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
.+. +......+..+++.++ ++++...++.|.+||. .+. .
T Consensus 91 ~~~-----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---~ 131 (299)
T 2z2n_A 91 EYT-----------------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---I 131 (299)
T ss_dssp EEE-----------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---E
T ss_pred EEe-----------------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC---E
Confidence 111 1123446778888876 5555566788999987 331 1
Q ss_pred cceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEE-EccccccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
.......+...+..+.++ ++.+++...++.|..||. +++.... +......+..++++ ++++++...++.|.+||
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 111222334567788886 445666666789999999 6665433 33345567888887 45555555678999999
Q ss_pred cCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-c-cccCcEEEEEecCCc-EEEEe
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-I-FAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~v~~~~~spdg-~l~s~ 416 (434)
. ++. ...+........+..+++.+++ .+.++...++.|..||.. ++.... + .+...+.++++ +++ ++++.
T Consensus 211 ~-~g~-~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 211 T-SGE-ITEFKIPTPNARPHAITAGAGI---DLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp T-TCC-EEEEECSSTTCCEEEEEECSTT---CEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred C-CCc-EEEEECCCCCCCceeEEECCCC---CEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 8 444 3333222223456677776543 255555567899999984 432211 1 12467899999 888 55554
Q ss_pred CCCCCEEEEEccCCcc
Q 013881 417 DGTGQVRVWQWCNGPV 432 (434)
Q Consensus 417 ~~dg~i~iwd~~~g~~ 432 (434)
. .+.|..++..++++
T Consensus 284 ~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 284 E-CDKIGKLTLIKDNM 298 (299)
T ss_dssp T-TTEEEEEEEC----
T ss_pred c-CCcEEEEEcCcccC
Confidence 4 57788888887765
No 185
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=2.6e-12 Score=120.30 Aligned_cols=242 Identities=10% Similarity=0.073 Sum_probs=146.9
Q ss_pred ceEEEEEeCCc--EEEecCCCeEEEEeCC-CCceEEEEecCcc--ccEEEEEccCCCCE--EEEEE-------------C
Q 013881 111 DILCRNWVQGN--CMYGEKCKFLHSWTVG-DGFKLLTQLEGHQ--KVVSGITLPSGSDK--LYSGS-------------K 170 (434)
Q Consensus 111 ~i~c~~~~~~~--~~~g~~d~~i~vwd~~-~~~~~~~~l~~h~--~~V~~l~~s~~~~~--l~s~s-------------~ 170 (434)
.+..++|+++. +++++.+ .|.+|++. ++ ++..... |. +.+..++|+|++++ +++++ .
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 45678887654 4555555 99999997 76 5544332 21 23556899999994 55553 6
Q ss_pred CCcEEEEECC-CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEe-
Q 013881 171 DETVRVWDCA-SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT- 246 (434)
Q Consensus 171 dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~- 246 (434)
++++.+|++. +++....+.. + ...+...+.+++|+|+ +|+++.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~------------------------~---------~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQN------------------------Y---------EYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEE------------------------E---------ECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEccCCCCcCcceEee------------------------E---------EeCCCCcceEEEECCCCCEEEEEcC
Confidence 8889999986 3544322110 0 0124567889999998 666655
Q ss_pred CCCcEEEEEcC-CCCCccccceeec--CccceEEEEEEC--CCEEEEec-CCCcEEEEeCC--CCeEE---EEEcc----
Q 013881 247 QDGAILAWKFN-VTTNCFEPAASLK--GHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLE--TLQCI---QTLTE---- 311 (434)
Q Consensus 247 ~dg~i~vwd~~-~~~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~--~~~~~---~~~~~---- 311 (434)
.++.|.+|++. ++.. ..+..+. .|...+..+.|+ ++++++++ .++.|.+|++. +++.. ..+..
T Consensus 165 ~~~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 165 TANKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp TTTEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred CCCEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 46899999998 4421 2222332 234567778886 55777665 47899999765 56542 22221
Q ss_pred ---ccc------cEEEEE-Ec--CCEEEEEeCCC------cEEEEEcCCCCceEEEe--eecCCccEEEEEeccCCCCCc
Q 013881 312 ---HTS------VVMSLL-CW--DQFLLSCSLDK------TIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 312 ---~~~------~v~~l~-~~--~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 371 (434)
|.. .+..++ ++ +++|+++..+. .|.+|++...+.+.... ..........++++|..=+++
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 122 477888 77 66777765432 89999996433333211 111112233455665100223
Q ss_pred EEEEEeC-CCeEEEEeCCCC
Q 013881 372 VLLCSCN-DNSVRFYDLPSF 390 (434)
Q Consensus 372 ~l~~~~~-dg~i~iwd~~~~ 390 (434)
+|++++. ++.|.+|++...
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSSCEEEEEEEETT
T ss_pred EEEEEEcCCCeEEEEEEchh
Confidence 7777775 489999998765
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=6.5e-11 Score=109.64 Aligned_cols=275 Identities=11% Similarity=0.052 Sum_probs=178.3
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE----------CCCcEEEEECCCCceEEEEecCC-----
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGG----- 192 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~----- 192 (434)
++.|.+.|..+. +.+.++..-..+ . ++++||+++|+.+. .++.|.+||..+++.+.++..+.
T Consensus 58 ~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTT-EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCC-eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 468999999998 888888765556 4 99999999998876 36789999999999999887542
Q ss_pred -----ceEEEEeCCCEEEEEc---CCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccc
Q 013881 193 -----EVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 193 -----~~~~~~~~~~~l~~~~---~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
....+.++++++++.. ++.|.++|+.+++.+....-.+...........+++.+.||++.+.++........
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 2245567888888763 57899999999987732221221111112233777889999999999876321100
Q ss_pred -cceeecCccceEE-EEEEC--CCEEEEecCCCcEEEEeCCCCe--EEEEEc---c-------ccccEEEEEEc--CCEE
Q 013881 265 -PAASLKGHSLAVV-SLVVG--ANKLYSGSMDNSIRVWNLETLQ--CIQTLT---E-------HTSVVMSLLCW--DQFL 326 (434)
Q Consensus 265 -~~~~~~~h~~~v~-~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~---~-------~~~~v~~l~~~--~~~l 326 (434)
....+.....++. ...|. ...++..+.+|.|++.|+.+.. .+..+. . .......+.++ ++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence 0001111111221 12331 2344445668999999997653 333332 0 11122223334 5666
Q ss_pred EEEeC----------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEE-EeCCCeEEEEeCCCCccccc
Q 013881 327 LSCSL----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC-SCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 327 ~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 395 (434)
+.... ...|.++|+.+.+.+..+.... ....+.++++.. .+|++ ...++.|.++|..+++.+..
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lavs~D~~--~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEK--PLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECSSSS--CEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEECCCCC--eEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 66542 2579999999988777666543 466788876652 25555 44589999999999999988
Q ss_pred ccccCcEEEEEecCC
Q 013881 396 IFAKQEIRAIQLGPG 410 (434)
Q Consensus 396 ~~~~~~v~~~~~spd 410 (434)
+.....-..|.+++|
T Consensus 370 i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 370 VNQLGHGPQVITTAD 384 (386)
T ss_dssp ECCCCSSCCEEEECC
T ss_pred ecCCCCCceeEECCc
Confidence 877666666666665
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.49 E-value=7.8e-11 Score=108.50 Aligned_cols=209 Identities=11% Similarity=0.085 Sum_probs=147.5
Q ss_pred CeEEEEeCCCCceEEEEec-CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCc-eEEEEecC----------CceEE
Q 013881 129 KFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVINLG----------GEVGC 196 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~----------~~~~~ 196 (434)
+.|.+||..++ +.+..+. ++-.....|+++++++++++...++.|++||..... .+..+... ..+..
T Consensus 69 ~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 37999999988 6666554 455689999999999988888889999999986542 45555321 12334
Q ss_pred EE--e-CCCEEEEE--cCCcEEEEECCCCceEEec----------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCC
Q 013881 197 MI--S-EGPWIFIG--VTNFVKAWNTQTNTDLSLS----------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV 258 (434)
Q Consensus 197 ~~--~-~~~~l~~~--~~~~i~~w~~~~~~~~~~~----------~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~ 258 (434)
+. + ++.++++. .++.|++|+........+. .+......++++++ ++++...++.|++|+..+
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 43 3 45666665 3679999995544333332 12344889999876 666777889999999985
Q ss_pred CCCccccceee--cCccceEEEEEECCCEEEE--------ecCCCcEEEEeCCCCeEEEEEc---cccccEEEEEEc--C
Q 013881 259 TTNCFEPAASL--KGHSLAVVSLVVGANKLYS--------GSMDNSIRVWNLETLQCIQTLT---EHTSVVMSLLCW--D 323 (434)
Q Consensus 259 ~~~~~~~~~~~--~~h~~~v~~l~~~~~~l~s--------~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~~--~ 323 (434)
+ +.+..+ ..+...+..+.+.+..++. ...+..|++||+.+++.+..+. .+......++++ +
T Consensus 228 G----~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 228 K----EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp C----CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred C----cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 5 334443 3455567777776544332 2345589999999999998884 566778899998 5
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 013881 324 QFLLSCSLDKTIKVWFATD 342 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~ 342 (434)
..+++...++.|++|++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEESSSCCEEEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCc
Confidence 5777777899999998753
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.48 E-value=2.5e-11 Score=109.98 Aligned_cols=242 Identities=12% Similarity=0.082 Sum_probs=153.5
Q ss_pred eEEEEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~ 219 (434)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------------------- 63 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------------------- 63 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE--------------------------------
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE--------------------------------
Confidence 34455556677888999999998 7888888999999998876 332
Q ss_pred CceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce-eecCc-cceEEEEEEC--CCEEEE----e
Q 013881 220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGH-SLAVVSLVVG--ANKLYS----G 289 (434)
Q Consensus 220 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~h-~~~v~~l~~~--~~~l~s----~ 289 (434)
+..+...+.+++++++ ++++...++.|.+||..++.. .... ..... ...+..++++ ++++++ +
T Consensus 64 -----~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g 136 (296)
T 3e5z_A 64 -----EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW--ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYG 136 (296)
T ss_dssp -----EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE--EEEECEETTEECCCCCCEEECTTSCEEEEECSHH
T ss_pred -----EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE--EEEeeccCCCCCCCCCCEEECCCCCEEEECCccc
Confidence 2234556788899887 555555568899999866531 1111 11111 1234456665 556665 3
Q ss_pred c-------------CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce---EEEee
Q 013881 290 S-------------MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL---EVTYT 351 (434)
Q Consensus 290 s-------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~ 351 (434)
+ ..+.|..++.. ++ +..+..+......++++ ++.|++.+.++.|.+|++.....+ ....
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~- 213 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF- 213 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-
T ss_pred cccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-
Confidence 3 13467777765 44 34445566667888887 667777777899999999733333 1222
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEe-cCCc-EEEEeCCCCCEEEEEccC
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQL-GPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.........+++.+++. ++++. ++.|.+|+.. ++.+..+.....+.+++| +|++ .|++++.++ +.-++..+
T Consensus 214 ~~~~~~p~~i~~d~~G~---l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 214 TVEPGKTDGLRVDAGGL---IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp CCSSSCCCSEEEBTTSC---EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred eCCCCCCCeEEECCCCC---EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 21222334566654432 44444 8899999987 666655554333899999 6888 777777654 55666666
Q ss_pred Cccc
Q 013881 430 GPVA 433 (434)
Q Consensus 430 g~~~ 433 (434)
.++.
T Consensus 287 ~~~~ 290 (296)
T 3e5z_A 287 RGLE 290 (296)
T ss_dssp CBCC
T ss_pred cccc
Confidence 6553
No 189
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=3e-11 Score=113.38 Aligned_cols=259 Identities=11% Similarity=0.040 Sum_probs=170.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCC----------ceE-EEEe-CCCEEEEEcCCcEEEEECCCCceE-EecC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG----------EVG-CMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSG 227 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----------~~~-~~~~-~~~~l~~~~~~~i~~w~~~~~~~~-~~~~ 227 (434)
++..|+.++.++.|..+|..+++.+-.+.... .+. .... ++.+++...++.|..+|.++++.. ....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 46678888889999999999999887777632 222 2223 444444456789999999998876 3332
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccce-----EEEEEECCCEEEEecCCCcEEEEeCCC
Q 013881 228 PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA-----VVSLVVGANKLYSGSMDNSIRVWNLET 302 (434)
Q Consensus 228 ~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~l~s~s~dg~i~vwd~~~ 302 (434)
............+.+++++.++.|..+|..++.. +......... .......++.++.++.++.|..+|..+
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC
Confidence 2222222334566889999999999999988743 2222211111 012233467888899999999999999
Q ss_pred CeEEEEEcccccc----------E-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCc
Q 013881 303 LQCIQTLTEHTSV----------V-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 303 ~~~~~~~~~~~~~----------v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
++.+......... + ......++.++.++.++.+..+|..+++.+...... ....+.. ...
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~~~--- 278 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--DGN--- 278 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--ETT---
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--ECC---
Confidence 9988776532110 1 122234788888999999999999888765443321 1222222 122
Q ss_pred EEEEEeCCCeEEEEeCCCCcccccccc--cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 372 VLLCSCNDNSVRFYDLPSFAERGKIFA--KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+++++.++.|..+|..+++.+..... ...+...... ++.|+.++.+|.|+++|..+|+++
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEE
Confidence 677788899999999999987765541 1222222222 348888899999999999998763
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=9.6e-12 Score=110.87 Aligned_cols=236 Identities=10% Similarity=-0.009 Sum_probs=152.5
Q ss_pred cEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCC
Q 013881 152 VVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG 230 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~ 230 (434)
...+|++++++++++ +...++.|.+||..+...... ...+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------------------------------------~~~~~~ 67 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------------------------PFNGLY 67 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------------------------------------CCCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------------------------------------eeCCcC
Confidence 778899999999777 446788899998755432110 011223
Q ss_pred cEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEE
Q 013881 231 QVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 231 ~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
.+.+++++++ .|+++..++.|.+||..... ...+. .....+..+.++ ++.+++...++.|.+|+..+....
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN-----QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSC-----CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCce-----EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 4567888776 34444448899999977642 11121 223457788886 456666677889999987665443
Q ss_pred EEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 307 QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 307 ~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
.........+..++++ ++++++...++.|.+||......... ..........+++.+++ .++++...++.|.+
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~d~~g---~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFTDITAPWGIAVDEAG---TVYVTEHNTNQVVK 217 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCSSCCSEEEEEECTTC---CEEEEETTTSCEEE
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--cccCCCCceEEEECCCC---CEEEEECCCCcEEE
Confidence 3222333456677777 56666666678999999876543221 11111346677776543 36666667889999
Q ss_pred EeCCCCccccccc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcccC
Q 013881 385 YDLPSFAERGKIF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVAT 434 (434)
Q Consensus 385 wd~~~~~~~~~~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~~ 434 (434)
|+........... +...+.+++++++| ++++...++.|+++++...+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccccC
Confidence 9987654333222 23578999999999 88888999999999999877653
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=4.8e-11 Score=106.86 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=139.3
Q ss_pred cEEEecCCCeEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCC--ceEEE
Q 013881 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EVGCM 197 (434)
Q Consensus 121 ~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~~~~ 197 (434)
.+++++.++.|++||.+++ +.+.++..+. ..+.+++++|+|++|+ +.++.|..||. +++.+..+..+. .+...
T Consensus 7 ~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred EEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 3566789999999999999 8899998876 5789999999999988 45788999999 899999988752 33333
Q ss_pred --EeCCCEEEEEc--CCcEEEEECCCCceEEec------CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 198 --ISEGPWIFIGV--TNFVKAWNTQTNTDLSLS------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 198 --~~~~~~l~~~~--~~~i~~w~~~~~~~~~~~------~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
..++.++++.. .+.+..++.+......+. .+......+.+.++ ++++...++.|..||.. + +.
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G----~~ 157 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G----QL 157 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S----CE
T ss_pred EECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C----CE
Confidence 34777877755 456777776443332322 11123334455555 88889999999999987 6 34
Q ss_pred ceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEEEEccccc------cEEEEEEc--CCEEEEE
Q 013881 266 AASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS------VVMSLLCW--DQFLLSC 329 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~~l~~~--~~~l~s~ 329 (434)
+..+..... ..++.. +++.++++..++.|..+|..+++.+.++..+.. .+..+... ++.+++.
T Consensus 158 ~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 158 LNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 444443322 222333 567888888888999999999999999875431 24555554 4555554
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.7e-11 Score=125.71 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=148.8
Q ss_pred CccccEEEEEccCCCCEEEEEECC-----CcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+|...+..++|||||++||.++.+ .+|++||+.+++.+....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--------------------------------- 206 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--------------------------------- 206 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---------------------------------
Confidence 344578899999999999887654 469999999887653210
Q ss_pred EEecCCCCcEEEEEEeCC-EEEEEeCCC--------------cEEEEEcCCCCCccccceeecCccceEEEEEEC--CCE
Q 013881 223 LSLSGPVGQVYAMAVGND-LLFAGTQDG--------------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK 285 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~-~l~~g~~dg--------------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 285 (434)
+...+..++|+++ .|+.++.++ .|++|++.+....-..+.....+...+..+.++ +++
T Consensus 207 -----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 207 -----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp -----EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred -----CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence 0001134566665 455444443 488899876532112222333343456777775 557
Q ss_pred EEEecCC-----CcEEEEeCCCC--eEEEEEccccccEE-EEEEcCCEEEEEeCC----CcEEEEEcCCC-CceEEEeee
Q 013881 286 LYSGSMD-----NSIRVWNLETL--QCIQTLTEHTSVVM-SLLCWDQFLLSCSLD----KTIKVWFATDS-GNLEVTYTH 352 (434)
Q Consensus 286 l~s~s~d-----g~i~vwd~~~~--~~~~~~~~~~~~v~-~l~~~~~~l~s~s~d----g~i~vwd~~~~-~~~~~~~~~ 352 (434)
|+..+.+ ..|++||+.++ ++...+..+...+. .+..+++.|+..+.+ +.|.+||+.+. .....+..+
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 7666543 48999999877 31455555444333 334458888877764 45999998765 233444433
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC-CCccccccc--ccCcEEEEEecCCc-EEE----EeCCCCCEEE
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP-SFAERGKIF--AKQEIRAIQLGPGG-LFF----TGDGTGQVRV 424 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~spdg-~l~----s~~~dg~i~i 424 (434)
.. ..+..+.+. ++.++++...|+..+||.+. +++....+. ....+..+.++|++ .|+ +....++|++
T Consensus 362 ~~-~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 362 SK-DNLESVGIA----GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp CS-SEEEEEEEE----BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred CC-CeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 32 234455554 33478888889987777554 344444443 35678899999998 555 3345689999
Q ss_pred EEccCCcc
Q 013881 425 WQWCNGPV 432 (434)
Q Consensus 425 wd~~~g~~ 432 (434)
||+.+++.
T Consensus 437 ~d~~tg~~ 444 (741)
T 1yr2_A 437 LDPATAKT 444 (741)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99988763
No 193
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=8.2e-12 Score=126.40 Aligned_cols=239 Identities=10% Similarity=0.003 Sum_probs=156.0
Q ss_pred EecCccccEEEEEccCCCCEEEEE--ECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 145 QLEGHQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
.+.+|...|..++|+++.-++++. +.++...||....+.....
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------- 62 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES----------------------------------- 62 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE-----------------------------------
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce-----------------------------------
Confidence 456788999999999887777777 5688899998543332222
Q ss_pred EEecCCCCcEE---------EEEEe--CC--E-EEEEeC-CCcEEEEEcC--C-CCCccccceeecC-----ccceEEEE
Q 013881 223 LSLSGPVGQVY---------AMAVG--ND--L-LFAGTQ-DGAILAWKFN--V-TTNCFEPAASLKG-----HSLAVVSL 279 (434)
Q Consensus 223 ~~~~~~~~~v~---------~l~~~--~~--~-l~~g~~-dg~i~vwd~~--~-~~~~~~~~~~~~~-----h~~~v~~l 279 (434)
+..+...+. ...|+ |+ . |+.++. +..|.++++. . + . ...+.. |...+..+
T Consensus 63 --l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~----~-~~~l~~~~~~~~~~~~~~~ 135 (662)
T 3azo_A 63 --ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA----V-PRPLTPVSAVGGGLRWADP 135 (662)
T ss_dssp --SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC----C-CEECSCCCCSTTCEEEEEE
T ss_pred --eCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC----C-CEeccCCccCCCCccccCc
Confidence 222322222 34444 55 5 555443 5666666665 2 2 1 222333 56677777
Q ss_pred EEC--CCEEEEecCC----------CcEEEEeCCC------CeEEEEEc-cccccEEEEEEc--CCEEEEEeCC------
Q 013881 280 VVG--ANKLYSGSMD----------NSIRVWNLET------LQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLD------ 332 (434)
Q Consensus 280 ~~~--~~~l~s~s~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~d------ 332 (434)
+|+ ++.|++++.+ ..|++||+.+ ++. ..+. .+...+..+.|+ +++|+.++.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 775 6688888776 5899999988 544 4555 566677777787 6788877755
Q ss_pred --CcEEEEEcCC-CC--ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC--eEEEEeCCCCcccccccccCc----
Q 013881 333 --KTIKVWFATD-SG--NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN--SVRFYDLPSFAERGKIFAKQE---- 401 (434)
Q Consensus 333 --g~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~---- 401 (434)
..|++||+.. +. ....+... ....+..+.|+|++. +++++..++ .|.+||+.+++......+...
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~---l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p 290 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGS---LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGP 290 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSC---EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCC
T ss_pred CCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCe---EEEEECCCCCeEEEEEECCCCceeecccccccccCc
Confidence 3799999983 41 33333332 234577888887654 788888888 677777766654433333221
Q ss_pred -----EEEEEecCCc-EEEEeCCCCCEEEE--EccCCc
Q 013881 402 -----IRAIQLGPGG-LFFTGDGTGQVRVW--QWCNGP 431 (434)
Q Consensus 402 -----v~~~~~spdg-~l~s~~~dg~i~iw--d~~~g~ 431 (434)
+..++|+|++ +++++.. +.++|| |+.+++
T Consensus 291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 5678999999 8888888 999999 544444
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=1e-10 Score=105.85 Aligned_cols=224 Identities=12% Similarity=0.032 Sum_probs=152.3
Q ss_pred cceEEEEEeCC-c--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 110 TDILCRNWVQG-N--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 110 ~~i~c~~~~~~-~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
....+..|.++ . ++++..++.|+.|+..++ ...+..+...+.+++++++++++++...++.|.+||..+++...
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 34567888654 3 556778899999999876 45666677889999999999988887778899999998887654
Q ss_pred EEecCC-----ce--EEEEeCCCEEEE----Ec--------------CCcEEEEECCCCceEEecCCCCcEEEEEEeCC-
Q 013881 187 VINLGG-----EV--GCMISEGPWIFI----GV--------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND- 240 (434)
Q Consensus 187 ~~~~~~-----~~--~~~~~~~~~l~~----~~--------------~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~- 240 (434)
...... .+ ..+.+++.++++ +. .+.|..++.. ++...+..+......++|+++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTS
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCC
Confidence 432211 11 233346666665 22 2356666666 555556667778899999988
Q ss_pred -EEEEEeCCCcEEEEEcCCCCCcc-ccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccE
Q 013881 241 -LLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316 (434)
Q Consensus 241 -~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v 316 (434)
.+++.+.++.|.+|++..... + .....+..+...+..++++ ++++++ . ++.|.+||.. ++.+..+..+.. +
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~i~~d~~G~l~v~-~-~~~v~~~~~~-g~~~~~~~~~~~-~ 258 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGE-TEYQGVHFTVEPGKTDGLRVDAGGLIWAS-A-GDGVHVLTPD-GDELGRVLTPQT-T 258 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSC-EEEEEEEECCSSSCCCSEEEBTTSCEEEE-E-TTEEEEECTT-SCEEEEEECSSC-C
T ss_pred CEEEEeCCCCeEEEEEECCCCc-CcCCCeEeeCCCCCCCeEEECCCCCEEEE-c-CCeEEEECCC-CCEEEEEECCCC-c
Confidence 567778889999999973211 1 0011222234445567775 444444 4 8899999986 788888887777 8
Q ss_pred EEEEEc---CCEEEEEeCCCcEEEEEcCCC
Q 013881 317 MSLLCW---DQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 317 ~~l~~~---~~~l~s~s~dg~i~vwd~~~~ 343 (434)
.+++|. ++.|++++.+ .+.-++..+.
T Consensus 259 ~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred eeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 888884 4578888776 3444455443
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.41 E-value=1.8e-10 Score=106.64 Aligned_cols=269 Identities=13% Similarity=0.074 Sum_probs=177.5
Q ss_pred EEccCCCCEEEEEEC-----CCcEEEEECCCCceEEEEecCCceE-EEEeCCCEEEEEc-----------CCcEEEEECC
Q 013881 156 ITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGVINLGGEVG-CMISEGPWIFIGV-----------TNFVKAWNTQ 218 (434)
Q Consensus 156 l~~s~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-----------~~~i~~w~~~ 218 (434)
....|+++.++.... ++.|.+.|..+++.+.++..+.... .+.+++++++++. ++.|.+||..
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 445789999988876 6899999999999999998764443 3445788777654 4689999999
Q ss_pred CCceEE-ec-CC------CCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCccccceeecCccceEEEEEE-CCCE
Q 013881 219 TNTDLS-LS-GP------VGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANK 285 (434)
Q Consensus 219 ~~~~~~-~~-~~------~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~ 285 (434)
+.+... +. +. ......+.++++ +++++.. ++.|.++|+.+. +.+..+.-.. ...+.. ....
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~----~vv~tI~v~g--~~~~~P~g~~~ 191 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPD--CYHIFPTAPDT 191 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS--EEEEEEEETTE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC----cEEEEEECCC--cceeecCCCce
Confidence 988762 21 11 123456889888 6666653 689999999987 4455543211 122223 3567
Q ss_pred EEEecCCCcEEEEeCCC-CeEEEEEccc----cccEE-EEEEc--CCEEEEEeCCCcEEEEEcCCCCc--eEEEe--ee-
Q 013881 286 LYSGSMDNSIRVWNLET-LQCIQTLTEH----TSVVM-SLLCW--DQFLLSCSLDKTIKVWFATDSGN--LEVTY--TH- 352 (434)
Q Consensus 286 l~s~s~dg~i~vwd~~~-~~~~~~~~~~----~~~v~-~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--~~~~~--~~- 352 (434)
+++.+.||++.+.++.+ ++.......+ ..++. ...|. ...++..+.+|.|.+.|+..... ...+. ..
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence 88889999999999986 5653322211 12221 12442 34455577789999999876542 11111 00
Q ss_pred -----cCCccEEEEEeccCCCCCcEEEEEeC----------CCeEEEEeCCCCcccccccccCcEEEEEecCCc--EEEE
Q 013881 353 -----NEEHGVLALCGMPDSEGKPVLLCSCN----------DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG--LFFT 415 (434)
Q Consensus 353 -----~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg--~l~s 415 (434)
-.......+.+.++ ++ .++.... .+.|.++|+.+++.+.++.....+..|++++|+ +|++
T Consensus 272 ~~~~g~~p~g~q~~a~~~~--~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRA--LD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp HHHTTEEECSSSCEEEETT--TT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred cccccccCCCcceeeECCC--CC-eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence 00011112333333 33 3444321 257999999999999998888889999999998 5555
Q ss_pred -eCCCCCEEEEEccCCccc
Q 013881 416 -GDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 416 -~~~dg~i~iwd~~~g~~~ 433 (434)
...++.|.++|..+++++
T Consensus 349 tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EETTTTEEEEEETTTCCEE
T ss_pred EcCCCCeEEEEECCCCcEE
Confidence 456999999999999875
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=3.1e-10 Score=115.82 Aligned_cols=238 Identities=8% Similarity=0.039 Sum_probs=148.0
Q ss_pred cceEEEEEeCCc--EEEecCC-----CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCc---------
Q 013881 110 TDILCRNWVQGN--CMYGEKC-----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET--------- 173 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~d-----~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~--------- 173 (434)
..+....|+++. +++++.+ ..|++||+.++ +.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 367788998874 3333322 28999999998 555433222 23678999999999999988765
Q ss_pred -------EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEe--cCCCCcEEEEEEeCC--EE
Q 013881 174 -------VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND--LL 242 (434)
Q Consensus 174 -------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~--~~~~~~v~~l~~~~~--~l 242 (434)
|++|++.+++... .+.. ..+...+..+.|+++ .|
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~-----------------------------------~~v~~~~~~~~~~~~~~~SpDg~~l 247 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSED-----------------------------------ILCAEFPDEPKWMGGAELSDDGRYV 247 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGC-----------------------------------EEEECCTTCTTCEEEEEECTTSCEE
T ss_pred ccCCCCEEEEEECCCCcccc-----------------------------------eEEeccCCCCeEEEEEEEcCCCCEE
Confidence 6666665543210 1111 224556788999998 55
Q ss_pred EEEeC-----CCcEEEEEcCC------CCCccccceeecCccceE-EEEEECCCEEEEecCC----CcEEEEeCCCCe--
Q 013881 243 FAGTQ-----DGAILAWKFNV------TTNCFEPAASLKGHSLAV-VSLVVGANKLYSGSMD----NSIRVWNLETLQ-- 304 (434)
Q Consensus 243 ~~g~~-----dg~i~vwd~~~------~~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s~d----g~i~vwd~~~~~-- 304 (434)
+..+. +..|++||+.. +. .....+..+...+ ..+..+++.|+..+.+ +.|.+||+.+++
T Consensus 248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 248 LLSIREGCDPVNRLWYCDLQQESNGITGI---LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp EEEEECSSSSCCEEEEEEGGGSSSSSCSS---CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEEEccCCCccEEEEEECcccccccCCc---cceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 55443 57899999976 32 1233444444333 3355567776655443 369999998864
Q ss_pred EEEEEccccc--cEEEEEEc-CC-EEEEEeCCCc--EEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-
Q 013881 305 CIQTLTEHTS--VVMSLLCW-DQ-FLLSCSLDKT--IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC- 377 (434)
Q Consensus 305 ~~~~~~~~~~--~v~~l~~~-~~-~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 377 (434)
..+.+..|.. .+..+.+. ++ ++++...|+. |.+||+.+++.+..+..+ ...+..+.+.++. ..++++.+
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~--~~l~~~~ss 400 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKD--TEIFYQFTS 400 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTC--SEEEEEEEC
T ss_pred cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCC--CEEEEEEeC
Confidence 2345555544 67778877 44 5666677775 556676555544444333 3456677776643 23444433
Q ss_pred --CCCeEEEEeCCCCc
Q 013881 378 --NDNSVRFYDLPSFA 391 (434)
Q Consensus 378 --~dg~i~iwd~~~~~ 391 (434)
..++|++||+.+++
T Consensus 401 ~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 401 FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCc
Confidence 35789999998876
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=3.5e-09 Score=95.40 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=154.4
Q ss_pred ecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEe
Q 013881 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (434)
Q Consensus 146 l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~ 225 (434)
+..+...+.+|+++++++++++...++.|.+||.. ++.. .+. .
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~-----------------------------------~ 52 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP-----------------------------------L 52 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE-----------------------------------C
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec-----------------------------------C
Confidence 34456789999999999988777668899999987 5432 111 1
Q ss_pred cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCC
Q 013881 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 226 ~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 301 (434)
..+...+.+++++++ ++++...++.|..|+.... .....+......+..+.++ +..+++...++.|.+||.
T Consensus 53 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~- 127 (299)
T 2z2n_A 53 PTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD- 127 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred CcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-
Confidence 223456788888877 5555555788999987522 1111222234567788886 445666667889999998
Q ss_pred CCeEEEE-EccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 302 TLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 302 ~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
+++.... +..+...+..++++ +..+++...++.|..||. ++. +..+...........+++.+++ .+.++...
T Consensus 128 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~ 202 (299)
T 2z2n_A 128 DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-ITEFKIPTPASGPVGITKGNDD---ALWFVEII 202 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTS---SEEEEETT
T ss_pred CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEeeCCCCCCcceeEEECCCC---CEEEEccC
Confidence 5544332 23345567888887 445555556789999998 443 3332222223346667765543 36666556
Q ss_pred CCeEEEEeCCCCccccc-cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 379 DNSVRFYDLPSFAERGK-IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 379 dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
++.|.+||. +++.... .. ....+.+++++++| ++++...++.|.+||. +++
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence 789999999 6553321 11 24678999999999 7776667888999997 443
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=1e-10 Score=104.78 Aligned_cols=205 Identities=9% Similarity=0.010 Sum_probs=137.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~ 240 (434)
.+++|++++.|+.|.+||.++++.+.++..+. ...+.++.+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------------------------------------~~~~~~~~~~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK------------------------------------GWECNSVAATKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT------------------------------------TCCCCEEEECTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc------------------------------------cCCCcCeEECCC
Confidence 45788899999999999998998876654321 023456666666
Q ss_pred --EEEEEeCCCcEEEEEcCCCCCccccceeecCc-cceEEEEEE--CCCEEEEecC-CCcEEEEeCCCCeEEEEEcc---
Q 013881 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-SLAVVSLVV--GANKLYSGSM-DNSIRVWNLETLQCIQTLTE--- 311 (434)
Q Consensus 241 --~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~--- 311 (434)
+++ +.++.|..||. ++ +.+..+..+ ...+.++.+ +++.+++.+. ++.|..+|. +++.+..+..
T Consensus 48 G~ilv--s~~~~V~~~d~-~G----~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~ 119 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DG----RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG 119 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TS----CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS
T ss_pred CCEEE--eCCCCEEEECC-CC----CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC
Confidence 444 45677888887 45 344444433 235555555 5778888776 788888885 7787777642
Q ss_pred ---ccccEEEEEE--cCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEe
Q 013881 312 ---HTSVVMSLLC--WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (434)
Q Consensus 312 ---~~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 386 (434)
+......+.+ +++++++...++.|..||.. ++.+..+.... ....+...++ +.+++++..++.|..+|
T Consensus 120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~---~~~~~~~~~~---g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG---TPFSSAFLDN---GDCLVACGDAHCFVQLN 192 (276)
T ss_dssp CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS---CCCEEEECTT---SCEEEECBTTSEEEEEC
T ss_pred CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC---CccceeEcCC---CCEEEEeCCCCeEEEEe
Confidence 1122223333 38899999999999999987 66655554432 2233444433 34788888888999999
Q ss_pred CCCCccccccccc-------CcEEEEEecCCc-EEEEe
Q 013881 387 LPSFAERGKIFAK-------QEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 387 ~~~~~~~~~~~~~-------~~v~~~~~spdg-~l~s~ 416 (434)
..+++.+.++... ..+..++..++| .+++.
T Consensus 193 ~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 193 LESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999987776421 237888999999 66665
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=5.5e-11 Score=121.03 Aligned_cols=240 Identities=10% Similarity=-0.005 Sum_probs=143.3
Q ss_pred cccceEEEEEeCCc-EEE------ecCCCeEEEEeCCCCceEEEEecCccccE--EEEEccCCCCEEEEEECCCc-----
Q 013881 108 IKTDILCRNWVQGN-CMY------GEKCKFLHSWTVGDGFKLLTQLEGHQKVV--SGITLPSGSDKLYSGSKDET----- 173 (434)
Q Consensus 108 ~~~~i~c~~~~~~~-~~~------g~~d~~i~vwd~~~~~~~~~~l~~h~~~V--~~l~~s~~~~~l~s~s~dg~----- 173 (434)
|...+....|+++. .++ |+.+..|++||+.++ +.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg-~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG-EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC-CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC-CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 44568889998775 232 344579999999998 4331 1222233 67999999999999998876
Q ss_pred --------EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEE
Q 013881 174 --------VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF 243 (434)
Q Consensus 174 --------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~ 243 (434)
|++|++.+++....+ ......+...+..+.|+++ .|+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~l---------------------------------v~~~~~~~~~~~~~~~SpDG~~l~ 242 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTV---------------------------------VHERTGDPTTFLQSDLSRDGKYLF 242 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEE---------------------------------EECCCCCTTCEEEEEECTTSCCEE
T ss_pred ccCCCCCEEEEEECCCCchhceE---------------------------------EEecCCCCEEEEEEEECCCCCEEE
Confidence 888888766521000 0012234567889999998 555
Q ss_pred EEeCCC----cEEEEEcCCCCCccccceeecCccceEEEEE-ECCCEEEEecC----CCcEEEEeCCCCeE--EEEEcc-
Q 013881 244 AGTQDG----AILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSM----DNSIRVWNLETLQC--IQTLTE- 311 (434)
Q Consensus 244 ~g~~dg----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~----dg~i~vwd~~~~~~--~~~~~~- 311 (434)
.++.++ .|++|+...+ ....+..+...+.... .+++ ++..+. ++.|.+||+.+++. ...+..
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 243 VYILRGWSENDVYWKRPGEK-----DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp EEEEETTTEEEEEEECTTCS-----SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred EEEeCCCCceEEEEEcCCCC-----ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 555444 5666644332 1233333333333333 4566 544433 58899999987653 233333
Q ss_pred c-cccEEEEEEc-CCEEEEEeCCCcEEEEEcCC-CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe---CCCeEEEE
Q 013881 312 H-TSVVMSLLCW-DQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFY 385 (434)
Q Consensus 312 ~-~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iw 385 (434)
+ ...+..+++. +.++++...|+..+||.+.. ++....+ .......+..+.++++. ..++++.+ ..++|++|
T Consensus 317 ~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l-~~~~~~~v~~~~~s~d~--~~l~~~~ss~~~P~~v~~~ 393 (695)
T 2bkl_A 317 DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTV-QLPGVGAASNLMGLEDL--DDAYYVFTSFTTPRQIYKT 393 (695)
T ss_dssp CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEEC-CCSSSSEECCCBSCTTC--SEEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEe-cCCCCeEEEEeecCCCC--CEEEEEEcCCCCCCEEEEE
Confidence 3 4557777777 45677778899988886652 3323222 22223345555565543 23443333 34789999
Q ss_pred eCCCCcc
Q 013881 386 DLPSFAE 392 (434)
Q Consensus 386 d~~~~~~ 392 (434)
|+.+++.
T Consensus 394 d~~~g~~ 400 (695)
T 2bkl_A 394 SVSTGKS 400 (695)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9988653
No 200
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.36 E-value=2e-09 Score=99.00 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=145.3
Q ss_pred cceEEEEEeCC-cEE-EecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC----CcEEEEECCCCc
Q 013881 110 TDILCRNWVQG-NCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQ 183 (434)
Q Consensus 110 ~~i~c~~~~~~-~~~-~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d----g~v~iwd~~~~~ 183 (434)
....++.|.++ .++ ++..++.|++||..++ +.......+...+.+++++++++++++...+ +.|.+||..+++
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCC-cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 45678888654 454 4567899999999887 5554444567889999999999988887776 689999998887
Q ss_pred eEEEEec---CCceEEEE--eCCCEEEEEcC-------CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCC
Q 013881 184 CAGVINL---GGEVGCMI--SEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQD 248 (434)
Q Consensus 184 ~~~~~~~---~~~~~~~~--~~~~~l~~~~~-------~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~d 248 (434)
....+.. ...+..+. +++.++++... +.|..++..+++...+......+..++|+++ .| ++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 6544431 22344443 35666665542 4566667666555444444456788999988 44 455668
Q ss_pred CcEEEEEcCCCCCcccc-----ceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccc------c
Q 013881 249 GAILAWKFNVTTNCFEP-----AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS------V 315 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~-----~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~ 315 (434)
+.|.+|++......... ...+.++ ..+..+.++ ++++++...++.|.+||. +++.+..+..+.. .
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccC
Confidence 89999999642211111 0111222 356677775 556666667899999998 5677777755433 5
Q ss_pred EEEEEEc--CCEEEEEeCCC
Q 013881 316 VMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 316 v~~l~~~--~~~l~s~s~dg 333 (434)
+.++++. ++.|+.++.++
T Consensus 282 ~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECTTSCEEEEEEECG
T ss_pred cceEEECCCCCEEEEEeCcc
Confidence 7888886 45676666553
No 201
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.35 E-value=1.6e-10 Score=116.58 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=191.9
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc----------E-EEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~----------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.++.+++++.++.|+.+|..+| +.+.++...... + ..+++ ++..|+.++.|+.|..+|..+|+.+-
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4667778888899999999999 777777643211 0 12222 46788899999999999999999998
Q ss_pred EEecC-C-----ceEE-EEeCCCEEEEEc-------CCcEEEEECCCCceE-EecCCCC---------------------
Q 013881 187 VINLG-G-----EVGC-MISEGPWIFIGV-------TNFVKAWNTQTNTDL-SLSGPVG--------------------- 230 (434)
Q Consensus 187 ~~~~~-~-----~~~~-~~~~~~~l~~~~-------~~~i~~w~~~~~~~~-~~~~~~~--------------------- 230 (434)
.+... . .+.. ....+..++++. ++.|..+|.++++.+ .......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred eecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 88865 2 1111 111234455443 589999999999876 3221110
Q ss_pred -----------cEEEEEEeCC--EEEEEeCCC-------------------cEEEEEcCCCCCccccceeecCc------
Q 013881 231 -----------QVYAMAVGND--LLFAGTQDG-------------------AILAWKFNVTTNCFEPAASLKGH------ 272 (434)
Q Consensus 231 -----------~v~~l~~~~~--~l~~g~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~h------ 272 (434)
....++++++ +++.++.++ .|..+|..+++..+.. ....|
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~--~~~~~d~wd~~ 310 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY--QETPGDNWDYT 310 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE--ESSTTCCSCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE--ecCCCcccccc
Confidence 0124567665 777777664 5999999888432221 11112
Q ss_pred --cce-EEEEEECC---CEEEEecCCCcEEEEeCCCCeEEEEEccccc-----------cE-------------------
Q 013881 273 --SLA-VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS-----------VV------------------- 316 (434)
Q Consensus 273 --~~~-v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~v------------------- 316 (434)
..+ +..+..++ +.++.++.+|.|+++|.++++.+..+..... ++
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 112 33344466 5799999999999999999999877653210 01
Q ss_pred -----EEEEEc--CCEEEEEeC-------------------------------------------CCcEEEEEcCCCCce
Q 013881 317 -----MSLLCW--DQFLLSCSL-------------------------------------------DKTIKVWFATDSGNL 346 (434)
Q Consensus 317 -----~~l~~~--~~~l~s~s~-------------------------------------------dg~i~vwd~~~~~~~ 346 (434)
..++++ ..++++... .+.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 034555 456655433 278999999888766
Q ss_pred EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCc--EEEEEecCCc--EEEEeCC----
Q 013881 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQE--IRAIQLGPGG--LFFTGDG---- 418 (434)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~spdg--~l~s~~~---- 418 (434)
........ .....+.... .++++++.||.+++||+.+++.+..+..... ..-+.|..+| ++++.+.
T Consensus 471 W~~~~~~~---~~~g~~~~~g---~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~ 544 (677)
T 1kb0_A 471 WSVEHVSP---WNGGTLTTAG---NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGV 544 (677)
T ss_dssp EEEEESSS---CCCCEEEETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHH
T ss_pred eecCCCCC---CcCcceEeCC---CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCcc
Confidence 55443221 1111122222 2778889999999999999999988764332 2345566788 4444322
Q ss_pred ------------CCCEEEEEccC
Q 013881 419 ------------TGQVRVWQWCN 429 (434)
Q Consensus 419 ------------dg~i~iwd~~~ 429 (434)
.+.+.+|.+..
T Consensus 545 ~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 545 YGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp HHHHCCSCSCCCCCEEEEEEETC
T ss_pred ccccccccccCCCCeEEEEeccc
Confidence 46788888763
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=1.6e-08 Score=90.99 Aligned_cols=267 Identities=12% Similarity=0.104 Sum_probs=166.1
Q ss_pred cceEEEEEeC-CcEEEec-CCCeEEEEeCCCCceEEE-EecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 110 TDILCRNWVQ-GNCMYGE-KCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 110 ~~i~c~~~~~-~~~~~g~-~d~~i~vwd~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
....++.+.+ +.++.+. .++.|.+||.. + +... .+..+...+.+|+++++++++++...++.|..+|.. ++..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence 3566777754 4566655 57899999988 4 3322 334445789999999999988877767889999987 5432
Q ss_pred EEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccc
Q 013881 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~ 264 (434)
.+. .......+..+++.++ ++++...++.|..+|.. +. .
T Consensus 96 ~~~-----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~ 136 (300)
T 2qc5_A 96 EYP-----------------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---I 136 (300)
T ss_dssp EEE-----------------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---E
T ss_pred Eec-----------------------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---E
Confidence 211 1222356778888766 55555557889888876 32 1
Q ss_pred cceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEE-EccccccEEEEEEc--CCEEEEEeCCCcEEEEE
Q 013881 265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (434)
Q Consensus 265 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd 339 (434)
....+......+..+.++ ++.+++...++.|..+|. +++.... +..+...+..+.++ ++..++....+.|.+||
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 111223334567788875 455566666789999998 5554432 22344567888887 44555445567899998
Q ss_pred cCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-cc-ccCcEEEEEecCCc-EEEEe
Q 013881 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-IF-AKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~spdg-~l~s~ 416 (434)
. ++. ...............+++.+++ .+.++...++.|..|+.. ++.... +. ....+.++++.++| ++++.
T Consensus 216 ~-~g~-~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 216 T-TGE-ISEYDIPTPNARPHAITAGKNS---EIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp T-TCC-EEEEECSSTTCCEEEEEECSTT---CEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred C-CCc-EEEEECCCCCCCceEEEECCCC---CEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 7 333 2222222223446677765543 255555567899999984 433221 22 24568899999999 55554
Q ss_pred CCCCCEEEEEcc
Q 013881 417 DGTGQVRVWQWC 428 (434)
Q Consensus 417 ~~dg~i~iwd~~ 428 (434)
. . .|..++.+
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 4 4 67666653
No 203
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=1.1e-11 Score=113.86 Aligned_cols=290 Identities=14% Similarity=0.082 Sum_probs=184.2
Q ss_pred CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceE--E
Q 013881 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--C 196 (434)
Q Consensus 119 ~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--~ 196 (434)
++.+++++.++.|..|| .++ +.+..+..+...+.++...+++. |+.++.+ |..+|. +++.+..+....... .
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 56788888899999999 777 66666665556677788877775 4444444 888886 565443333222211 1
Q ss_pred EEeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccc
Q 013881 197 MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274 (434)
Q Consensus 197 ~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 274 (434)
...++.+.+...++.+..+|.. ++.. ....+...+.++...++ .++.++.++.|..+|.. + +..........
T Consensus 104 ~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g----~~~~~~~~~~~ 177 (330)
T 3hxj_A 104 TIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G----TEKWRFKTNDA 177 (330)
T ss_dssp EEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S----CEEEEEECSSC
T ss_pred eEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C----CEeEEEecCCC
Confidence 1224444444457899999998 5544 44444445556666645 78888889999999987 5 23333333344
Q ss_pred eEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC-CEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 275 AVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 275 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
.+.++..+ ...++.++ +.|..+| .+++.+..+......+.++..++ ..|..++.++.|..+|. ++..+..+...
T Consensus 178 ~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp CCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS
T ss_pred ceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC
Confidence 45556664 44566666 8899999 78887777766666677777774 48888888899999974 34333333222
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
... ...+.. +. ++ .|..++.+|.|..+|. +++.+..+.. ...+.++...++|.|..++.+|.+++...+..+
T Consensus 254 ~~~--~~~~~~--~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 254 KRI--ESSPVI--GN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCC--CSCCEE--CT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC----
T ss_pred CCc--cccceE--cC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccccc
Confidence 111 111222 11 22 4777888889999996 5665554433 445667777788877889999999998876554
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.34 E-value=2.4e-09 Score=105.39 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=171.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEE--EeCCCEEEEEc-CCcEEEEECC--CCceEEecCCCCcEEE
Q 013881 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQ--TNTDLSLSGPVGQVYA 234 (434)
Q Consensus 160 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~-~~~i~~w~~~--~~~~~~~~~~~~~v~~ 234 (434)
+.+.++++...+++|.++|..+++.+.++..+..+..+ .+++++++++. ++.|.+||+. +.+.+...........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 44566777788999999999999999999887665544 34788877654 7799999995 6655532222345678
Q ss_pred EEEe----CC--EEE-EEeCCCcEEEEEcCCCCCccccceeecC----------ccc-eEEEEEEC---CCEEEEecCCC
Q 013881 235 MAVG----ND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKG----------HSL-AVVSLVVG---ANKLYSGSMDN 293 (434)
Q Consensus 235 l~~~----~~--~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~---~~~l~s~s~dg 293 (434)
++|+ |+ +++ +...++.|.++|..+. +++..+.. |.. .+..+..+ +..++....+|
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETL----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTC----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCC----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 9999 46 444 4555699999998775 33333321 212 45666654 33667777889
Q ss_pred cEEEEeCCCCeEE--EEEccccccEEEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceEEEee-ecCCc--cEEEEEecc
Q 013881 294 SIRVWNLETLQCI--QTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFATDSGNLEVTYT-HNEEH--GVLALCGMP 365 (434)
Q Consensus 294 ~i~vwd~~~~~~~--~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 365 (434)
.|.++|..+.+.+ ..+ ........+.|+ +++++++. .++.|.++|+.+.+....+.. ..... ....+ +.|
T Consensus 321 ~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p 398 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP 398 (567)
T ss_dssp EEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET
T ss_pred eEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC
Confidence 9999999875432 222 122334566676 67776655 578999999998866555443 22111 11112 233
Q ss_pred CCCCCcEEEEEe-CCCeEEEEeCCC-------Cccccccccc-CcEEEEEecCCc-EEEEeCC-------CCCEEEEEcc
Q 013881 366 DSEGKPVLLCSC-NDNSVRFYDLPS-------FAERGKIFAK-QEIRAIQLGPGG-LFFTGDG-------TGQVRVWQWC 428 (434)
Q Consensus 366 ~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~-~~v~~~~~spdg-~l~s~~~-------dg~i~iwd~~ 428 (434)
+.+++.+++. .++.|.++|..+ .+.+..+... ..-..+..+|++ +|.+... ..+|.|+|+.
T Consensus 399 --~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 399 --TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp --TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred --CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 2344555553 568999999987 4455555432 222446789999 7766552 4699999998
Q ss_pred CC
Q 013881 429 NG 430 (434)
Q Consensus 429 ~g 430 (434)
+.
T Consensus 477 ~~ 478 (567)
T 1qks_A 477 AM 478 (567)
T ss_dssp GC
T ss_pred cc
Confidence 76
No 205
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.34 E-value=2.9e-10 Score=115.01 Aligned_cols=285 Identities=13% Similarity=0.118 Sum_probs=181.6
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc----------E-EEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~----------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.++.+++++.++.|+.+|..+| +.+.++..+... + ..+++ ++..|+.++.|+.|..+|..+|+.+-
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 4667788888999999999999 777777643221 0 11111 45688899999999999999999998
Q ss_pred EEecC-C-----ce--EEEEeCCCEEEEEc-------CCcEEEEECCCCceE-EecC-C-C-------------------
Q 013881 187 VINLG-G-----EV--GCMISEGPWIFIGV-------TNFVKAWNTQTNTDL-SLSG-P-V------------------- 229 (434)
Q Consensus 187 ~~~~~-~-----~~--~~~~~~~~~l~~~~-------~~~i~~w~~~~~~~~-~~~~-~-~------------------- 229 (434)
.+... . .+ ..+..+ ..++++. ++.|..||.++++.+ .... . .
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 87764 1 11 111223 4444442 578999999999876 3321 0 0
Q ss_pred ----------CcEEEEEEeCC--EEEEEeCCCc-------------------EEEEEcCCCCCccccceeecC--cc---
Q 013881 230 ----------GQVYAMAVGND--LLFAGTQDGA-------------------ILAWKFNVTTNCFEPAASLKG--HS--- 273 (434)
Q Consensus 230 ----------~~v~~l~~~~~--~l~~g~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~--h~--- 273 (434)
.....++++++ +++.++.++. |..+|..+++. +-.++. |.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~----~W~~~~~~~d~wd 300 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY----VWHYQTTPGDAWD 300 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE----EEEEESSTTCCSC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce----eEeeecCCccccc
Confidence 00124677765 8888887764 99999998853 322221 21
Q ss_pred ----ce--EEEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEccccc-c---------------------------E
Q 013881 274 ----LA--VVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS-V---------------------------V 316 (434)
Q Consensus 274 ----~~--v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~---------------------------v 316 (434)
.+ +..+.+++. .++.++.+|.++++|.++++.+........ . +
T Consensus 301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~ 380 (689)
T 1yiq_A 301 YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL 380 (689)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence 11 223445664 788999999999999999998754321110 0 0
Q ss_pred -----------EEEEEc--CCEEEEEeC---------------------------------------------CCcEEEE
Q 013881 317 -----------MSLLCW--DQFLLSCSL---------------------------------------------DKTIKVW 338 (434)
Q Consensus 317 -----------~~l~~~--~~~l~s~s~---------------------------------------------dg~i~vw 338 (434)
..++++ .+++++... +|.|+.|
T Consensus 381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence 013444 345554421 3779999
Q ss_pred EcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCc--EEEEEecCCc--EEE
Q 013881 339 FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQE--IRAIQLGPGG--LFF 414 (434)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~spdg--~l~ 414 (434)
|+.+++.+......... ..-.+...+ .++++++.|+.|+.||.++++++.++..... ..-+.|..+| +++
T Consensus 461 D~~tG~~~W~~~~~~~~---~~g~~~tag---glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVTIF---NGGTLSTAG---NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp ETTTTEEEEEEEESSSC---CCCEEEETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ECCCCCeEeEccCCCCc---cCccceECC---CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99988766655443221 111111112 2788899999999999999999987764322 2346677888 555
Q ss_pred Ee
Q 013881 415 TG 416 (434)
Q Consensus 415 s~ 416 (434)
+.
T Consensus 535 ~~ 536 (689)
T 1yiq_A 535 FM 536 (689)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=1.9e-10 Score=108.45 Aligned_cols=263 Identities=13% Similarity=0.024 Sum_probs=170.9
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE----------CCCcEEEEECCCCceEEEEecCCceEEEE
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGGEVGCMI 198 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 198 (434)
+.|.+.|..+. +.+.++..-..+ .++++||+++|+.+. .++.|.++|..+++.+..+...+...
T Consensus 99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--- 172 (426)
T 3c75_H 99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--- 172 (426)
T ss_dssp EEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---
T ss_pred CeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc---
Confidence 68999999998 888888765566 899999999998876 46789999999999887765320000
Q ss_pred eCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCccccceeecCccc
Q 013881 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHSL 274 (434)
Q Consensus 199 ~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~h~~ 274 (434)
.........+.++++ +++++.. ++.|.+.|+.+. +.+..+.-..
T Consensus 173 ---------------------------~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----kvv~~I~v~g- 220 (426)
T 3c75_H 173 ---------------------------FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----TFDRMLDVPD- 220 (426)
T ss_dssp ---------------------------CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS-
T ss_pred ---------------------------cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----eEEEEEEcCC-
Confidence 000112235677777 6666653 678999999887 4444443211
Q ss_pred eEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEE----ccccccE-EEEEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 013881 275 AVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTL----TEHTSVV-MSLLCW--DQFLLSCSLDKTIKVWFATDSGNL 346 (434)
Q Consensus 275 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~----~~~~~~v-~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~ 346 (434)
...+... ...+++.+.||.+.+.++.+++..... .....++ ..+.+. ++.++..+..+.|.+.|+......
T Consensus 221 -~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 221 -CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp -EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred -ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 1223333 356777888999999998666655322 1111121 112233 566666677899999998654321
Q ss_pred EEEeeec-----------CCccEEEEEeccCCCCCcEEEEEe---------CCCeEEEEeCCCCcccccccccCcEEEEE
Q 013881 347 EVTYTHN-----------EEHGVLALCGMPDSEGKPVLLCSC---------NDNSVRFYDLPSFAERGKIFAKQEIRAIQ 406 (434)
Q Consensus 347 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 406 (434)
...... .......+.+.++.. +++++.. .++.|.++|+.+.+.+.++........++
T Consensus 300 -v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~--rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia 376 (426)
T 3c75_H 300 -FRAPIEALTEAERADDWRPGGWQQTAYHRQSD--RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSIN 376 (426)
T ss_dssp -ECCCEESSCTTTGGGTEEECSSSCEEEEGGGT--EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEE
T ss_pred -EeeeeeeccccccccccccCCceeeEEcCCCC--EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEE
Confidence 111000 000111245555433 2333322 13579999999999999988777789999
Q ss_pred ecCCc--EEEEeC-CCCCEEEEEccCCccc
Q 013881 407 LGPGG--LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 407 ~spdg--~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
|+||| ++++.. .++.|.|+|..+++++
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 99998 566666 5999999999998865
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.33 E-value=6.2e-10 Score=99.01 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=146.4
Q ss_pred ceEEEEEeC-CcEEE-e-cCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 111 DILCRNWVQ-GNCMY-G-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 111 ~i~c~~~~~-~~~~~-g-~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
...++++.+ +.++. + ..++.|.+|+..+. ........+...+.+|+++++++++++.. ++.|.+||....... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 345667754 45555 5 56789999998765 32222233445788999999998666655 888999998765322 1
Q ss_pred EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
+ .......+..++++++ ++++...++.|.+|+..... .
T Consensus 102 ~------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~ 141 (270)
T 1rwi_B 102 L------------------------------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----Q 141 (270)
T ss_dssp C------------------------------------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS----C
T ss_pred e------------------------------------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce----e
Confidence 1 0112245778888877 55565677889999654432 1
Q ss_pred ceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 013881 266 AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 341 (434)
..........+..++++ ++.+++...++.|.+||............+...+..++++ +..+++...++.|.+||..
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 11112222345666775 5566666678899999998766544333344667888887 4455555568899999986
Q ss_pred CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc
Q 013881 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE 392 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 392 (434)
...... ...........+++.+++ .++++...++.|+++++...+.
T Consensus 222 ~~~~~~--~~~~~~~~p~~i~~~~~g---~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 222 STTSTV--LPFTGLNTPLAVAVDSDR---TVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCCEE--CCCCSCSCEEEEEECTTC---CEEEEEGGGTEEEEECCCGGGS
T ss_pred CCccee--eccCCCCCceeEEECCCC---CEEEEECCCCEEEEEcCCCccc
Confidence 543322 111222346777776543 3788888899999999886544
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.32 E-value=3.4e-10 Score=114.28 Aligned_cols=269 Identities=12% Similarity=0.071 Sum_probs=172.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCce------------EEEEeCCCEEEE-EcCCcEEEEECCCCceE-EecC
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------------GCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSG 227 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~i~~w~~~~~~~~-~~~~ 227 (434)
+..|+.++.++.|.-+|..+|+.+-.+...... ..+...+..+++ ..++.|..+|..+++.+ ....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 556777788899999999999999888765321 112223444554 55889999999999876 3333
Q ss_pred C-C----CcEE-EEEEeCCEEEEEeC------CCcEEEEEcCCCCCccccceeec-------------------------
Q 013881 228 P-V----GQVY-AMAVGNDLLFAGTQ------DGAILAWKFNVTTNCFEPAASLK------------------------- 270 (434)
Q Consensus 228 ~-~----~~v~-~l~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~------------------------- 270 (434)
. . ..+. ......+.+++++. ++.|+.+|..+++..++....-.
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~ 236 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWW 236 (677)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHH
T ss_pred CcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCcee
Confidence 2 1 1111 22234556666654 69999999998854321111000
Q ss_pred ---CccceEEEEEE--CCCEEEEecCCC-------------------cEEEEeCCCCeEEEEEcc--cc--------ccE
Q 013881 271 ---GHSLAVVSLVV--GANKLYSGSMDN-------------------SIRVWNLETLQCIQTLTE--HT--------SVV 316 (434)
Q Consensus 271 ---~h~~~v~~l~~--~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~--~~--------~~v 316 (434)
+.......+++ ..+.++.++.++ .|..+|.++++.+..++. |. .++
T Consensus 237 ~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~ 316 (677)
T 1kb0_A 237 EAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMI 316 (677)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCE
T ss_pred EeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcE
Confidence 00001113344 467888777664 599999999999887764 21 122
Q ss_pred -EEEEEcC---CEEEEEeCCCcEEEEEcCCCCceEEEeeecCC---------ccEE------------------------
Q 013881 317 -MSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE---------HGVL------------------------ 359 (434)
Q Consensus 317 -~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~------------------------ 359 (434)
..+...+ +.++.++.+|.|+++|..+++.+..+...... ..+.
T Consensus 317 l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~ 396 (677)
T 1kb0_A 317 LADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH 396 (677)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS
T ss_pred EEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCC
Confidence 2233345 68899999999999999998876554322100 0000
Q ss_pred EEEeccCCCCCcEEEEEeC-------------------------------------------CCeEEEEeCCCCcccccc
Q 013881 360 ALCGMPDSEGKPVLLCSCN-------------------------------------------DNSVRFYDLPSFAERGKI 396 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~~~ 396 (434)
.+++.|.. .++++... .+.|..||+.+++.+.++
T Consensus 397 ~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 397 PMSFNPQT---GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CCEEETTT---TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CceEcCCC---CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 12333322 25555432 278999999999998887
Q ss_pred cccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 397 FAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 397 ~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+..++....+..++ ++++++.||.+++||..+|+++
T Consensus 474 ~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 474 EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 766555555566666 8888999999999999999864
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=7.4e-11 Score=109.71 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=128.9
Q ss_pred cEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCC-------ccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCC
Q 013881 231 QVYAMAVGND--LLFAGTQDGAILAWKFNVTTN-------CFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 231 ~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 301 (434)
++..+++++. ++++|+.++ +.+|++..... .+++... ..+.. |..++|+++.|+++ .++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCFHGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence 6888899888 888888874 55698764320 0122222 23555 99999988888888 88999999998
Q ss_pred CCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 302 TLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 302 ~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
+......+..|...+.++.+....+++++.||.|.+||+.+..... . ...+.+++|+|.+ ++.|..||.
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~--~~~Vs~v~WSpkG-----~~vg~~dg~ 183 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----L--AQNVTSFDVTNSQ-----LAVLLKDRS 183 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----E--EESEEEEEECSSE-----EEEEETTSC
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----c--cCCceEEEEcCCc-----eEEEEcCCc
Confidence 8776667777888898888886569999999999999998766532 1 2468899998765 567889999
Q ss_pred EEEEeCCCCcc--cccc----------cccCcEEEEEecCCc-EEEE
Q 013881 382 VRFYDLPSFAE--RGKI----------FAKQEIRAIQLGPGG-LFFT 415 (434)
Q Consensus 382 i~iwd~~~~~~--~~~~----------~~~~~v~~~~~spdg-~l~s 415 (434)
+++|+....+. ...+ .+...|.+|.|.+++ ++++
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99998887664 3333 256789999999999 6665
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.29 E-value=5.5e-09 Score=95.00 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=149.1
Q ss_pred CccccEEEEEccCCCCEEEE-------EECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 148 GHQKVVSGITLPSGSDKLYS-------GSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s-------~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
..-....+++|++++.++++ ...++.|.+||..+++...... .
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~----------------------------- 64 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P----------------------------- 64 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C-----------------------------
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c-----------------------------
Confidence 33456688999999988887 5778889999988776532110 0
Q ss_pred ceEEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccc-eee-cC-ccceEEEEEEC--CCEEEEecCC-
Q 013881 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPA-ASL-KG-HSLAVVSLVVG--ANKLYSGSMD- 292 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~-~~-h~~~v~~l~~~--~~~l~s~s~d- 292 (434)
...++...+..+.++++ .|++++..+.|.+||.. +.. ... ... .. ....+..+.++ ++++++...+
T Consensus 65 ---~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 65 ---EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp ---EETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred ---ccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCCEEEEecCcc
Confidence 01123356778888775 56666655678899987 421 111 111 11 12346777776 4455555444
Q ss_pred --------------CcEEEEeCCCCeEEEEEccccccEEEEEEc----CC--EEEEE-eCCCcEEEEEcCCCCceE---E
Q 013881 293 --------------NSIRVWNLETLQCIQTLTEHTSVVMSLLCW----DQ--FLLSC-SLDKTIKVWFATDSGNLE---V 348 (434)
Q Consensus 293 --------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~--~l~s~-s~dg~i~vwd~~~~~~~~---~ 348 (434)
+.|..||.. ++.... ..+......++++ ++ .|+.+ ..++.|.+||+.....+. .
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~ 216 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred cccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence 578888876 554332 2333445666666 43 45444 567899999986222211 1
Q ss_pred EeeecCC--ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEE-EeCCCCCEE
Q 013881 349 TYTHNEE--HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFF-TGDGTGQVR 423 (434)
Q Consensus 349 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~-s~~~dg~i~ 423 (434)
+...... .....+++.+++ .++++...++.|.+||..+++....+.. ...+.+++|+|++ .|+ +...++.|.
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G---~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDN---NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTC---CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEECCCCCCCCCCceEECCCC---CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 1111111 235566665543 3666666788999999987766555443 4679999999999 454 555678999
Q ss_pred EEEccCC
Q 013881 424 VWQWCNG 430 (434)
Q Consensus 424 iwd~~~g 430 (434)
.|++...
T Consensus 294 ~~~~~~~ 300 (314)
T 1pjx_A 294 KFEWQRN 300 (314)
T ss_dssp EEECSSC
T ss_pred EEeCCCC
Confidence 9998753
No 211
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=9.5e-10 Score=111.25 Aligned_cols=268 Identities=15% Similarity=0.096 Sum_probs=169.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCce------------EE-EEeCCCEEEEEcCCcEEEEECCCCceE-EecC
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------------GC-MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSG 227 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------~~-~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~ 227 (434)
+..|+.++.++.|.-+|..+|+.+-.+...... .. ...++.+++.+.++.|..+|.++++.+ ....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 567888888999999999999999888754321 11 123444444455899999999999876 3222
Q ss_pred --CC---CcEE-EEEEeCCEEEEEe------CCCcEEEEEcCCCCCccccceee-c------------------------
Q 013881 228 --PV---GQVY-AMAVGNDLLFAGT------QDGAILAWKFNVTTNCFEPAASL-K------------------------ 270 (434)
Q Consensus 228 --~~---~~v~-~l~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~-~------------------------ 270 (434)
+. ..+. +.....+.+++++ .+|.|+.||..+++..++..... .
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 11 1111 1122345666654 36899999999885432211000 0
Q ss_pred --CccceEEEEEE--CCCEEEEecCCCc-------------------EEEEeCCCCeEEEEEcc--cc-------ccE--
Q 013881 271 --GHSLAVVSLVV--GANKLYSGSMDNS-------------------IRVWNLETLQCIQTLTE--HT-------SVV-- 316 (434)
Q Consensus 271 --~h~~~v~~l~~--~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~--~~-------~~v-- 316 (434)
++......+++ ..++++.++.++. |..+|.++++.+..++. |. ...
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 00000113444 4578888887764 99999999999988764 21 111
Q ss_pred EEEEEcCC---EEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEE----------------------------------
Q 013881 317 MSLLCWDQ---FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL---------------------------------- 359 (434)
Q Consensus 317 ~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------------------------------- 359 (434)
..+.+.++ .++.++.+|.++++|..+++.+........ ....
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~-~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ-SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC-SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc-ccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence 22334454 788999999999999998877643221110 0000
Q ss_pred ----EEEeccCCCCCcEEEEEeC---------------------------------------------CCeEEEEeCCCC
Q 013881 360 ----ALCGMPDSEGKPVLLCSCN---------------------------------------------DNSVRFYDLPSF 390 (434)
Q Consensus 360 ----~~~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~ 390 (434)
.+++.|.. .++++... +|.|+.||+.++
T Consensus 389 ~~w~~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 389 HDWQPMSYNPDT---GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp SCSSCCEEETTT---TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cCCCcceECCCC---CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 02222221 24444321 478999999999
Q ss_pred cccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 391 AERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 391 ~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+.+.++.....+..-.+...+ ++++++.||.|+.||.++|+++
T Consensus 466 ~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 466 QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 988887765554444555556 9999999999999999999864
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=2.6e-10 Score=106.00 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=132.4
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCc-----------eEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----------CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
.++.+++++...+|++|+.++ +++|++++.+ ......... +..+.+++.+|+++.++.|++||+.+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSST
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhh
Confidence 689999999999999999986 6669875433 223455666 887777889999999999999998776
Q ss_pred ceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEe
Q 013881 221 TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 221 ~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 299 (434)
... ....+...+.++.+.+..+++++.||.|.+||+.... .. .+...|.+++|+++-++.|..||++++|+
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~----~~----~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS----TK----QLAQNVTSFDVTNSQLAVLLKDRSFQSFA 188 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC----EE----EEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc----cc----cccCCceEEEEcCCceEEEEcCCcEEEEc
Confidence 544 4556777888888877678899999999999998763 21 14568999999988899999999999999
Q ss_pred CCCCeE--EEEE------c---cccccEEEEEEcC--CEEEE
Q 013881 300 LETLQC--IQTL------T---EHTSVVMSLLCWD--QFLLS 328 (434)
Q Consensus 300 ~~~~~~--~~~~------~---~~~~~v~~l~~~~--~~l~s 328 (434)
...++. ..++ . +|...|.++.|.+ .++++
T Consensus 189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 988776 6666 3 3778899999983 34444
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.25 E-value=2.2e-09 Score=110.02 Aligned_cols=239 Identities=15% Similarity=0.062 Sum_probs=143.2
Q ss_pred cceEEEEEeCCc--EEEecCC-----CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCc---------
Q 013881 110 TDILCRNWVQGN--CMYGEKC-----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET--------- 173 (434)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~d-----~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~--------- 173 (434)
..+....|+++. +++++.+ ..|++||+.++ +.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 367788998764 3333322 46999999998 55433 112223467899999 99998887764
Q ss_pred -----EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec--CCCCcEEEEEEeCC--EEEE
Q 013881 174 -----VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFA 244 (434)
Q Consensus 174 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~--~~~~~v~~l~~~~~--~l~~ 244 (434)
|++|++.+++... .+... .+...+..+.|+++ .|+.
T Consensus 240 ~~~~~v~~~~lgt~~~~~-----------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~~ 284 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSAD-----------------------------------QPVFATPELPKRGHGASVSSDGRWVVI 284 (741)
T ss_dssp CCCCEEEEEETTSCGGGC-----------------------------------EEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEECCCCchhC-----------------------------------EEEeccCCCCeEEEEEEECCCCCEEEE
Confidence 4455544332100 11122 23345888999998 5555
Q ss_pred EeCC-----CcEEEEEcCCCCCccccceeecCccce-EEEEEECCCEEEEecC----CCcEEEEeCCCC--eEEEEEccc
Q 013881 245 GTQD-----GAILAWKFNVTTNCFEPAASLKGHSLA-VVSLVVGANKLYSGSM----DNSIRVWNLETL--QCIQTLTEH 312 (434)
Q Consensus 245 g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~ 312 (434)
.+.+ ..|++||+..+.. +....+..+... ...+..+++.|+..+. ++.|.+||+.++ +....+..+
T Consensus 285 ~~~~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 362 (741)
T 1yr2_A 285 TSSEGTDPVNTVHVARVTNGKI--GPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES 362 (741)
T ss_dssp EEECTTCSCCEEEEEEEETTEE--CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred EEEccCCCcceEEEEECCCCCC--cccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence 5543 4899999976521 102333333322 2334457787776665 345999999884 344444455
Q ss_pred cccEEEEEEc-CCEEEEEeCCCcEEEEEcC-CCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe---CCCeEEEEeC
Q 013881 313 TSVVMSLLCW-DQFLLSCSLDKTIKVWFAT-DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFYDL 387 (434)
Q Consensus 313 ~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~ 387 (434)
...+..+.+. +.++++...|+..+||.+. +++.... ........+..+.++++.+ .++++.+ ..++|++||+
T Consensus 363 ~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~-l~~~~~~~v~~~~~s~d~~--~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 363 KDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGA-VSLPGIGSASGLSGRPGDR--HAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp SSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEE-CBCSSSCEEEEEECCBTCS--CEEEEEEETTEEEEEEEEET
T ss_pred CCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceee-ccCCCCeEEEEeecCCCCC--EEEEEEcCCCCCCEEEEEEC
Confidence 5566677777 4566777888888887654 2332322 2222334567777776543 2444433 3478999999
Q ss_pred CCCc
Q 013881 388 PSFA 391 (434)
Q Consensus 388 ~~~~ 391 (434)
.+++
T Consensus 440 ~tg~ 443 (741)
T 1yr2_A 440 ATAK 443 (741)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8865
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=1.7e-08 Score=95.57 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=142.2
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCc
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQ 231 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~ 231 (434)
....|+|+++++++++...++.|++||..+++...... ....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--------------------------------------~~~~ 173 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--------------------------------------GFKG 173 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------------TCCB
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--------------------------------------cCCC
Confidence 46677777777766666566777777776655432211 1122
Q ss_pred EEEEEEeCC--EEEEEeCCC--cEEEEEcCCCCCccccceeecC-ccceEEEEEECC--CEEEEecCCCcEEEEeCCCCe
Q 013881 232 VYAMAVGND--LLFAGTQDG--AILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 232 v~~l~~~~~--~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~ 304 (434)
.. ++|+++ .|+++..++ .|.+++....... .....+.. ....+.++++++ ..|+.+..++.|+.||+.++.
T Consensus 174 ~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 174 GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 22 777776 777777765 7888887654210 11111112 334556677764 466667778999999998776
Q ss_pred EEEE----EccccccE-E-EEEEcC--C-EEEEEeCCCcEEEEEcCCCCceEEEeeec-------------CCccEEEEE
Q 013881 305 CIQT----LTEHTSVV-M-SLLCWD--Q-FLLSCSLDKTIKVWFATDSGNLEVTYTHN-------------EEHGVLALC 362 (434)
Q Consensus 305 ~~~~----~~~~~~~v-~-~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~ 362 (434)
.... ..++...- . .+++++ . ++++-..++.|+.|+.... ...+.... .-.....++
T Consensus 252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 252 VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 4322 22222222 2 777773 4 4445556788999987543 33333321 012356677
Q ss_pred eccCCCCCcEEEEEe-CCCeEEEEeCCCCcccccccc---------------cCcEEEEEecCCc-EEEEeCCCCCEEEE
Q 013881 363 GMPDSEGKPVLLCSC-NDNSVRFYDLPSFAERGKIFA---------------KQEIRAIQLGPGG-LFFTGDGTGQVRVW 425 (434)
Q Consensus 363 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~spdg-~l~s~~~dg~i~iw 425 (434)
+.++.. ++++-. .++.|+.|++.++.......+ -.....|+++++| ++++-..++.|+.+
T Consensus 330 ~d~dG~---lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 330 VDEDGN---FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCC---EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred EeCCCC---EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 765543 777777 789999999877654322211 2458899999999 88888888999988
Q ss_pred Ecc
Q 013881 426 QWC 428 (434)
Q Consensus 426 d~~ 428 (434)
+++
T Consensus 407 ~~e 409 (409)
T 3hrp_A 407 AVE 409 (409)
T ss_dssp EEC
T ss_pred EeC
Confidence 763
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=3.5e-09 Score=98.12 Aligned_cols=266 Identities=10% Similarity=-0.008 Sum_probs=171.3
Q ss_pred eEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE----------CCCcEEEEECCCCceEEEEecC--------
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLG-------- 191 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~-------- 191 (434)
.|.+.|..++ +.+.++..-..+ .++++||+++|+.+. .+++|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7899999998 888888765566 799999999999886 3789999999999999999764
Q ss_pred --CceEEEEeCCCEEEEEc---CCcEEE--EECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCC-----
Q 013881 192 --GEVGCMISEGPWIFIGV---TNFVKA--WNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV----- 258 (434)
Q Consensus 192 --~~~~~~~~~~~~l~~~~---~~~i~~--w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~----- 258 (434)
.....+.+++++++++. ...+.+ +|..+ ...+.-. +. ..+..... .+++.+.||.+.+.++..
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 23445567888888764 356888 88877 2222111 11 11222222 666778899999998876
Q ss_pred CCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCe--EEEEEcc------------ccccEEEEEEcCC
Q 013881 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ--CIQTLTE------------HTSVVMSLLCWDQ 324 (434)
Q Consensus 259 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~------------~~~~v~~l~~~~~ 324 (434)
+.........+.-...+. . ..++..++..+. +.|.+.|+.+.+ .+..+.. .......+..+++
T Consensus 200 ~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp EECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred CeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 211000000111112233 2 334566666666 999999986532 3332211 0111123333466
Q ss_pred EEEEEeC---------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEe-CCCeEEEEeCCCCcccc
Q 013881 325 FLLSCSL---------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSFAERG 394 (434)
Q Consensus 325 ~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 394 (434)
.++++.. ++.+.++|+.+.+.+..+.... ....+.+.+++ ++++++.. .++.|.++|+.+++.+.
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg--~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDG--ASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSS--SCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCC--CEEEEEccCCCCeEEEEECCCCcEEE
Confidence 6665532 2356699999887766554433 35667777654 34667776 59999999999999999
Q ss_pred cccccCcEEEEEecCC
Q 013881 395 KIFAKQEIRAIQLGPG 410 (434)
Q Consensus 395 ~~~~~~~v~~~~~spd 410 (434)
.+........+++.+.
T Consensus 352 ~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 352 SVELDKGPESLSVQNE 367 (368)
T ss_dssp ECCCCSCCCEEECCCC
T ss_pred EEECCCCCCEEEeecC
Confidence 8887666667776653
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=1.8e-08 Score=91.59 Aligned_cols=229 Identities=9% Similarity=0.011 Sum_probs=146.3
Q ss_pred ceEEEEEeC-CcEEEe--------cCCCeEEEEeCCCCceEEEEec----CccccEEEEEccCC-CCEEEEEECCCcEEE
Q 013881 111 DILCRNWVQ-GNCMYG--------EKCKFLHSWTVGDGFKLLTQLE----GHQKVVSGITLPSG-SDKLYSGSKDETVRV 176 (434)
Q Consensus 111 ~i~c~~~~~-~~~~~g--------~~d~~i~vwd~~~~~~~~~~l~----~h~~~V~~l~~s~~-~~~l~s~s~dg~v~i 176 (434)
...+++|.+ +.++.+ ..++.|.+||..++ +...... ++...+.+++++++ ++++++. ....|.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~ 96 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence 345677854 455555 56789999998876 4332222 36678999999999 6655544 4447999
Q ss_pred EECCCCceEEE-EecC-----CceEEEE--eCCCEEEEEcC----------------CcEEEEECCCCceEEecCCCCcE
Q 013881 177 WDCASGQCAGV-INLG-----GEVGCMI--SEGPWIFIGVT----------------NFVKAWNTQTNTDLSLSGPVGQV 232 (434)
Q Consensus 177 wd~~~~~~~~~-~~~~-----~~~~~~~--~~~~~l~~~~~----------------~~i~~w~~~~~~~~~~~~~~~~v 232 (434)
||.. ++.... .... ..+..+. .++.+.++... +.|..++.. ++...+..+....
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 174 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP 174 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc
Confidence 9998 665433 2211 1233443 35666665543 467777766 4444443444556
Q ss_pred EEEEEe----CC--EEEE-EeCCCcEEEEEcC-CCCCc-cccceeecCcc-ceEEEEEEC--CCEEEEecCCCcEEEEeC
Q 013881 233 YAMAVG----ND--LLFA-GTQDGAILAWKFN-VTTNC-FEPAASLKGHS-LAVVSLVVG--ANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 233 ~~l~~~----~~--~l~~-g~~dg~i~vwd~~-~~~~~-~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~vwd~ 300 (434)
..++++ ++ .|++ ...++.|.+|++. .+... ......+..+. ..+..++++ ++++++...++.|.+||.
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 888999 87 4444 4568999999986 22100 01222333333 456777776 556666667889999999
Q ss_pred CCCeEEEEEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCC
Q 013881 301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDS 343 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~ 343 (434)
.+++.+..+..+...+.+++++ ++.|+++ ..++.|..|++...
T Consensus 255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 8888777777777788999986 5545544 45688999988654
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.22 E-value=6.9e-08 Score=86.83 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=151.8
Q ss_pred CccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecC
Q 013881 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~ 227 (434)
.....+.+|+++++++++++...++.|.+||.. ++... +. +..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~-----------------------------------~~~ 59 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE-----------------------------------VPT 59 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE-----------------------------------CSS
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE-----------------------------------CCC
Confidence 345688999999999988877778999999987 54332 11 122
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCC
Q 013881 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 303 (434)
....+..+++.++ ++++...++.|..+|.. +. .....+......+..+.++ ++++++...++.|..+|.. +
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG---FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC---eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence 3356778888776 55555557889999877 32 1112222233567788876 4566666668899999987 5
Q ss_pred eEEE-EEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 304 QCIQ-TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 304 ~~~~-~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
+... .+......+..+.++ ++..++...++.|..||. ++.. ..+...........+++.++. .+.++....+
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~ 209 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGNDG---ALWFVEIMGN 209 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTS---SEEEEETTTT
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECCCC---CEEEEccCCC
Confidence 5442 233345567888887 555555555788999988 4333 222222222346667665433 3666555677
Q ss_pred eEEEEeCCCCccccc-cc-ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCc
Q 013881 381 SVRFYDLPSFAERGK-IF-AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~-~~-~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~ 431 (434)
.|.+|+. +++.... +. ....+.+++++++| ++++...++.|..|+. +++
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSC
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCc
Confidence 8999998 4433322 21 34568999999999 7777767788999987 443
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=1.7e-08 Score=102.44 Aligned_cols=236 Identities=12% Similarity=0.071 Sum_probs=141.7
Q ss_pred CccccEEEEEccCCCCEEEEE-----ECCCcEEEEECCCCceEEEE-ecC-CceEEEEeCCCEEEEE-cCC---------
Q 013881 148 GHQKVVSGITLPSGSDKLYSG-----SKDETVRVWDCASGQCAGVI-NLG-GEVGCMISEGPWIFIG-VTN--------- 210 (434)
Q Consensus 148 ~h~~~V~~l~~s~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~-~~~--------- 210 (434)
+|...+..++||||+++||-+ +...+|++||+.+++.+... ... ....... +++.|+.. .+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 466689999999999988843 33357999999999865532 211 1222344 67666554 342
Q ss_pred ----cEEEEECCCCce---EEecC---CCCcEEEEEEeCC--E-EEEEeC---CCcEEEEEcCCCCCccccceeecCccc
Q 013881 211 ----FVKAWNTQTNTD---LSLSG---PVGQVYAMAVGND--L-LFAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSL 274 (434)
Q Consensus 211 ----~i~~w~~~~~~~---~~~~~---~~~~v~~l~~~~~--~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~ 274 (434)
.|.+|++.+... ..... +...+..+.++++ . +++... +..|+++|+..+.. ....+..+..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---~~~~l~~~~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---PLLTVQGDLD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC---CCEEEECSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC---ceEEEeCCCC
Confidence 489999887653 22222 3445788999998 3 344332 35899999877532 2333444444
Q ss_pred eEEE-EEECCCEEE-EecCC---CcEEEEeCCCCeE--EEEEccccccEEEEEEcCCEEEEEeCCC---cEEEEEcCCCC
Q 013881 275 AVVS-LVVGANKLY-SGSMD---NSIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDK---TIKVWFATDSG 344 (434)
Q Consensus 275 ~v~~-l~~~~~~l~-s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg---~i~vwd~~~~~ 344 (434)
.... +..+++.|+ ....+ +.|..+|+.+++. .+.+..|...+..++..++.|+....++ .|++||+...
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 3333 445566544 44333 6799999988654 3455555544446666688777666544 6888888643
Q ss_pred ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC---CCeEEEEeCCCCc
Q 013881 345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSFA 391 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~ 391 (434)
....+ .......+..+.+.++. ..++++.+. -++|+.||+.+++
T Consensus 361 ~~~~l-~~p~~~~~~~~~~~~d~--~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RVREV-ALPGLGSVSGFNGKHDD--PALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEE-CCSSSSEEEECCCCTTC--SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeEEe-ecCCCceEEeeecCCCC--CEEEEEecCCCCCCEEEEEECCCCe
Confidence 22222 22233345555554433 334444332 2789999998765
No 219
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.13 E-value=8.6e-07 Score=91.52 Aligned_cols=309 Identities=10% Similarity=0.073 Sum_probs=193.8
Q ss_pred eEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEe-cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 112 ILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 112 i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
|.++.. ..+.+..|+.++-|..|+..++ +..... ..+...|.+|...+++.+.+ ++.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQK-TFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTC-CEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCC-eEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 777777 4667788887666899998775 333221 22356799998887776555 4444349999988776543322
Q ss_pred c--------CCceEEEEeC-CCEEEEEcCCcEEEEECCCCceEEecC--------CCCcEEEEEEeCC-EEEEEeCCCcE
Q 013881 190 L--------GGEVGCMISE-GPWIFIGVTNFVKAWNTQTNTDLSLSG--------PVGQVYAMAVGND-LLFAGTQDGAI 251 (434)
Q Consensus 190 ~--------~~~~~~~~~~-~~~l~~~~~~~i~~w~~~~~~~~~~~~--------~~~~v~~l~~~~~-~l~~g~~dg~i 251 (434)
. ...+.++..+ ...+.++..+.|.+++..++....+.. ....|.++...++ .|-.|+.++-|
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl 332 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGL 332 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCE
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCe
Confidence 1 2346666542 334444444579999988877654421 2367999998887 78888988889
Q ss_pred EEEEcCCCCCccccceee----cCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEEEEcc--------ccccEEE
Q 013881 252 LAWKFNVTTNCFEPAASL----KGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTE--------HTSVVMS 318 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~----~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~ 318 (434)
..++.....- ...... .-....|.++..+. ..|..|+.++-|..||..+++....... ....|.+
T Consensus 333 ~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 410 (795)
T 4a2l_A 333 NYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKA 410 (795)
T ss_dssp EEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEE
T ss_pred EEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEE
Confidence 9998765421 111110 01234688888874 4678888888899999887654432211 2356888
Q ss_pred EEEc-CCE-EEEEeCCCcEEEEEcCCCCceEEEeee---cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 319 LLCW-DQF-LLSCSLDKTIKVWFATDSGNLEVTYTH---NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 319 l~~~-~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
+..+ ... |..|+.++-|.+||..++.. ..+... .....+.++...+ ++ .|..|+. +-|.+||..+++..
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~--~g--~lwigt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDG--EG--NLWLGTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECS--SS--CEEEEES-SCEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECC--CC--CEEEEec-CceeEEeCCCCeEE
Confidence 8886 444 88899888899999876542 222210 1123466665433 22 2555555 45888998775433
Q ss_pred cccc-------ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 394 GKIF-------AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 394 ~~~~-------~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
.... ....|.++...++|.|..|+. +-|..|+..+++
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTE
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCe
Confidence 2211 235799999999994444444 458888876654
No 220
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=2.7e-10 Score=104.54 Aligned_cols=255 Identities=16% Similarity=0.144 Sum_probs=156.6
Q ss_pred EEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCce-EEEEe-CCCEEEEEcCCcEEEEECCCCceE-EecCCCCcE
Q 013881 156 ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQV 232 (434)
Q Consensus 156 l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v 232 (434)
+.+..++ .|+.++.++.|..|| .+++.+..+...... ..+.. .+..+.++..+ +..+|. +++.. .........
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~~~ 100 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTKKAIV 100 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC-----
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECC-CCcEEEEEECCCCcc
Confidence 3444454 466777888899999 888876655544333 33333 35667776666 888886 44432 222222222
Q ss_pred EEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEcc
Q 013881 233 YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTE 311 (434)
Q Consensus 233 ~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 311 (434)
....+....+.+++.++.|..+|.. +. .......+...+.++..+ ...++.++.++.|..+|.. ++.+..+..
T Consensus 101 ~~~~~~~~~l~v~t~~~~l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 101 SDFTIFEDILYVTSMDGHLYAINTD-GT----EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp CCEEEETTEEEEECTTSEEEEECTT-SC----EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cCceEECCEEEEEecCCEEEEEcCC-CC----EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec
Confidence 3334446688899999999999987 42 233333333344455555 5568888889999999998 888777766
Q ss_pred ccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 312 HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 312 ~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
....+.++..+ +..|..++ +.|..+| .++.......... ..+.++...++ + .|..++.++.|..+|. ++
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~---g-~l~v~t~~~gl~~~~~-~g 244 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISED---G-TIYVTSLDGHLYAINP-DG 244 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTT---S-CEEEEETTTEEEEECT-TS
T ss_pred CCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCC---C-eEEEEcCCCeEEEECC-CC
Confidence 66666777775 55566666 8899999 5554443333221 22333333222 2 3667777888998874 44
Q ss_pred cccccccc-cCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 391 AERGKIFA-KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 391 ~~~~~~~~-~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
+.+..+.. ...+..+.+.+++.|..++.+|.|..+|. +++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC
T ss_pred CEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc
Confidence 44444333 22234455666777778888888999885 554
No 221
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.10 E-value=1.2e-06 Score=90.46 Aligned_cols=311 Identities=10% Similarity=0.063 Sum_probs=192.6
Q ss_pred ccceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEecC-------ccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 109 KTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 109 ~~~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~-------h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
...|.++.. ..+.+..|+.++-|.+||..++ +....... ....|.+|...+++.+.+ |+.+| |.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcCC
Confidence 346777776 4567888876656999998876 43332221 136799999998887555 44555 8999988
Q ss_pred CCceEEEEec--------CCceEEEEe--CCCEEEEEcCCcEEEEECCCCceEEecC-------CCCcEEEEEEeCC-EE
Q 013881 181 SGQCAGVINL--------GGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSG-------PVGQVYAMAVGND-LL 242 (434)
Q Consensus 181 ~~~~~~~~~~--------~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~~~-------~~~~v~~l~~~~~-~l 242 (434)
+++....... ...+.++.. ++.+.+...++.|..++..+.....+.. ....|.++...++ .|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 7765433221 134666654 4555555566889999877665433221 2456999998877 78
Q ss_pred EEEeCCCcEEEEEcCCCCCccccceee------cCccceEEEEEEC-CCE-EEEecCCCcEEEEeCCCCeEEEEEc----
Q 013881 243 FAGTQDGAILAWKFNVTTNCFEPAASL------KGHSLAVVSLVVG-ANK-LYSGSMDNSIRVWNLETLQCIQTLT---- 310 (434)
Q Consensus 243 ~~g~~dg~i~vwd~~~~~~~~~~~~~~------~~h~~~v~~l~~~-~~~-l~s~s~dg~i~vwd~~~~~~~~~~~---- 310 (434)
.+|+.++-|..|+..+..- ...... .-....|.++..+ ... |..|+.++-|.+||..+++......
T Consensus 371 WiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp EEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred EEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 8899988899998775421 111100 0123568888875 334 8888888889999998876443322
Q ss_pred cccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeee-----cCCccEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 311 EHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 311 ~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
.....|.++..+ ...|..|+. +.|.+||..+... ..+... .....+.++.... ++. |..|+. +-|..
T Consensus 449 l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~--~g~--lWigt~-~Gl~~ 521 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDS--HKR--LWIGGE-EGLSV 521 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECT--TCC--EEEEES-SCEEE
T ss_pred cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE-EEccccccccccCCceEEEEEECC--CCC--EEEEeC-CceEE
Confidence 134568888887 456666766 5688898765432 222111 1123456665433 232 455555 55888
Q ss_pred EeCCCCccccc------ccccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 385 YDLPSFAERGK------IFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 385 wd~~~~~~~~~------~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
||..+.+.... ......|.++...++|.|..|+.. -|..||..++++
T Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 522 FKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred EeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence 88876554100 012457999999999944334444 488888776543
No 222
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=3.4e-07 Score=85.45 Aligned_cols=215 Identities=8% Similarity=-0.035 Sum_probs=137.5
Q ss_pred CCeEEEEeCCCCceEEEEecCc-------cccEEEEEccCCCCEEEEEEC--CCcEEEEECCCCceEEE-EecCCceEEE
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGV-INLGGEVGCM 197 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h-------~~~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~~~~~ 197 (434)
++.|.+||..+. +.+..+.-- ...-..++|+||+++|+.+.. ++.|.++| .+++.+.. +.....+...
T Consensus 96 ~~~v~viD~~t~-~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~ 173 (373)
T 2mad_H 96 TDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIH 173 (373)
T ss_pred CCeEEEEECCCC-cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEE
Confidence 678999999886 666665421 123457999999999999874 57899999 99999888 7765543322
Q ss_pred EeC-CCEEEEEcCCcEEEEECCCCceEEe-c-----CCCCcE-EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce
Q 013881 198 ISE-GPWIFIGVTNFVKAWNTQTNTDLSL-S-----GPVGQV-YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (434)
Q Consensus 198 ~~~-~~~l~~~~~~~i~~w~~~~~~~~~~-~-----~~~~~v-~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~ 267 (434)
... ..+++...++.+.+++. +++.... . .....+ ....+.++ .++..+..+.+.+.|+..... ....
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~v~~ 250 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--TNKA 250 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--eEee
Confidence 222 23444566889999999 7665521 1 111111 22333333 333334678999999865421 1111
Q ss_pred eec------------CccceEEEEEECCCEEEEecC----------CCcEEEEeCCCCeEEEEEccccccEEEEEEc--C
Q 013881 268 SLK------------GHSLAVVSLVVGANKLYSGSM----------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D 323 (434)
Q Consensus 268 ~~~------------~h~~~v~~l~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~ 323 (434)
.+. ........+..++++++++.. ++.|.++|+.+++.+.++... .....+.++ +
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg 329 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDG 329 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCC
Confidence 111 011111233445666666543 358999999999999988543 346777777 6
Q ss_pred C-EEEEEe-CCCcEEEEEcCCCCceEE
Q 013881 324 Q-FLLSCS-LDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 324 ~-~l~s~s-~dg~i~vwd~~~~~~~~~ 348 (434)
+ .++++. .++.|.++|+.+.+.+..
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 6 677776 489999999998876655
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=2.3e-07 Score=83.76 Aligned_cols=213 Identities=7% Similarity=0.028 Sum_probs=135.3
Q ss_pred EEEEEeC--CcEEE-ecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 113 LCRNWVQ--GNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 113 ~c~~~~~--~~~~~-g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
-+..|.+ +.++. ....+.|+.||..++ +. ..+. +...+.+++++++++++++ . +..|.+||..+++......
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-QV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTC-CE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCC-cE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence 3567765 33433 446789999999887 33 2232 4568999999999995554 4 5679999999887654443
Q ss_pred cC-----CceEEEE--eCCCEEEEEcC----------CcEEEEECCC-CceEEecCCCCcEEEEEEeCC---EEEEEeCC
Q 013881 190 LG-----GEVGCMI--SEGPWIFIGVT----------NFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND---LLFAGTQD 248 (434)
Q Consensus 190 ~~-----~~~~~~~--~~~~~l~~~~~----------~~i~~w~~~~-~~~~~~~~~~~~v~~l~~~~~---~l~~g~~d 248 (434)
.. ..+..+. +++.+.++... ..-.+|.+.. ++...+.........++|+++ ++++.+.+
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence 32 1233332 36666665421 2234444432 333333344456788999987 44566778
Q ss_pred CcEEEEEcC--CCCCc-cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcC
Q 013881 249 GAILAWKFN--VTTNC-FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (434)
Q Consensus 249 g~i~vwd~~--~~~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (434)
+.|.+|++. ++... .+....+..+......++++ +++.++....+.|.+||..+++.+..+..+...+++++|.+
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence 999999985 22110 01122233334556777775 55666666778899999999999999988878899999973
Q ss_pred ---CEEEEEe
Q 013881 324 ---QFLLSCS 330 (434)
Q Consensus 324 ---~~l~s~s 330 (434)
+.|++++
T Consensus 251 ~d~~~L~vt~ 260 (297)
T 3g4e_A 251 KNYSEMYVTC 260 (297)
T ss_dssp GGGCEEEEEE
T ss_pred CCCCEEEEEc
Confidence 4454444
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=109.13 Aligned_cols=202 Identities=16% Similarity=0.027 Sum_probs=109.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE-eC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GN 239 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~-~~ 239 (434)
++..|++++.|+.|+.||..+|+.+..+.. .. +.+..+ ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~--------------------------------------~~s~p~~~~ 48 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP--------------------------------------VLQVPTHVE 48 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC--------------------------------------SCCCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC--------------------------------------ceecceEcC
Confidence 577899999999999999999988766542 11 111111 12
Q ss_pred C-EEEEEeCCCcEEEEEcCCCCCccccceeecCccc-eE-EEEEE-CCCEEEEecCCCcEEEEeCCCCeEEEEEcccccc
Q 013881 240 D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL-AV-VSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315 (434)
Q Consensus 240 ~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v-~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 315 (434)
+ .+++++.||.|+.||..+++. +.....+.. .+ .+..+ .++.+++++.|+.|+.||.++|+.+..+..+..
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~----~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~- 123 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEG----LTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA- 123 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CC----SEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------
T ss_pred CCEEEEeCCCCEEEEEECCCCce----eeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-
Confidence 2 566678999999999987643 222221111 00 01111 356788889999999999999999888766542
Q ss_pred EEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc
Q 013881 316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK 395 (434)
Q Consensus 316 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 395 (434)
......++.+++++.|+.|+.||.++++.+..+..... ....+..+......+++++.||.|+.||..+++.+.+
T Consensus 124 -~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 124 -DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred -ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 12222578899999999999999998876555432211 1111111110012467788999999999999998877
Q ss_pred ccccCcEEE-EEecCCc
Q 013881 396 IFAKQEIRA-IQLGPGG 411 (434)
Q Consensus 396 ~~~~~~v~~-~~~spdg 411 (434)
.....++.. ..++++|
T Consensus 199 ~~~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 199 QNYASPVVAFYVWQREG 215 (369)
T ss_dssp EECSSCEEEEEECTTSS
T ss_pred ecCCCceEEEEEecCCc
Confidence 665555543 4556666
No 225
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=1.6e-07 Score=94.66 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=176.4
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCcccc----------E-EEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~----------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.++.+++++.++.|+.+|..+| +.+.++...... + ..+++ ++..++.++.|+.|..+|..+|+.+-
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4667778888999999999999 777776543211 0 11122 35678889999999999999999998
Q ss_pred EEecCCc-----eE--EEEeCCCEEEEEc-------CCcEEEEECCCCceE-EecC---CCC------------------
Q 013881 187 VINLGGE-----VG--CMISEGPWIFIGV-------TNFVKAWNTQTNTDL-SLSG---PVG------------------ 230 (434)
Q Consensus 187 ~~~~~~~-----~~--~~~~~~~~l~~~~-------~~~i~~w~~~~~~~~-~~~~---~~~------------------ 230 (434)
.+..... +. .+..+ ..++++. ++.|..+|.++++.+ .... ...
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 8876321 11 11223 4455543 478999999999876 3321 100
Q ss_pred ----------cEEEEEEeCC--EEEEEeCCC-------------------cEEEEEcCCCCCccccceeecCcc------
Q 013881 231 ----------QVYAMAVGND--LLFAGTQDG-------------------AILAWKFNVTTNCFEPAASLKGHS------ 273 (434)
Q Consensus 231 ----------~v~~l~~~~~--~l~~g~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~h~------ 273 (434)
....++++++ +++.++.++ .|..+|..+++..+.. ....|.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~--~~~~~~~wd~~~ 298 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY--QVTPGDSWDFTA 298 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE--ESSTTCCSCCCC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe--ecCCCccccccC
Confidence 0113567664 888887776 3999999888432221 111121
Q ss_pred -ce--EEEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEccccc------------cE-------------------
Q 013881 274 -LA--VVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS------------VV------------------- 316 (434)
Q Consensus 274 -~~--v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------~v------------------- 316 (434)
.+ ...+.++++ .++.++.+|.++++|.++++.+........ ++
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 22 234556665 689999999999999999998854432110 00
Q ss_pred -----EEEEEc--CCEEEEE------------------------------------eCCCcEEEEEcCCCCceEEEeeec
Q 013881 317 -----MSLLCW--DQFLLSC------------------------------------SLDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 317 -----~~l~~~--~~~l~s~------------------------------------s~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
..++++ ...+++. ..+|.|..||+.+++.+.......
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 012333 1233221 134789999998887665554332
Q ss_pred CCc-cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcE--EEEEecCCc--EEEEeC
Q 013881 354 EEH-GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEI--RAIQLGPGG--LFFTGD 417 (434)
Q Consensus 354 ~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~spdg--~l~s~~ 417 (434)
... ..... .+ .++++++.|+.|+.||..+++.+.++.....+ .-+.+..+| +++.++
T Consensus 459 ~~~~~~~~t----~g---g~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 459 HWNGGTLST----AG---NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SCCCCEEEE----TT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcCceeEe----CC---CEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 211 11111 12 27888999999999999999998877653322 223344566 555443
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=109.00 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=109.7
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCc--e-
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--V- 194 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~- 194 (434)
..+.+++++.|+.|+.||..+| +.+..++. +.+.+..+..++..+++++.|+.|+.||.++|+.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 4567888999999999999999 78877776 5565555667788888889999999999999987766543311 1
Q ss_pred -EEEE-eCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecC
Q 013881 195 -GCMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 195 -~~~~-~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
..+. .++.+++.+.++.+..||.++++.+ .+..+. .+ ..+...+.+++++.|+.|+.||..++... ..+..
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~----W~~~~ 158 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-AD-SLSPSTSLLYLGRTEYTITMYDTKTRELR----WNATY 158 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCC----CEEEE
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cc-cccccCCEEEEEecCCEEEEEECCCCCEE----EeEec
Confidence 0111 2333333456889999999998876 333222 11 11113338889999999999999887432 22221
Q ss_pred ccceEEEEEECC-----CEEEEecCCCcEEEEeCCCCeEEEEEccccccEE
Q 013881 272 HSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317 (434)
Q Consensus 272 h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 317 (434)
+. .....+++ +.+++++.||.|+.||.++++.+..+.. ..++.
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~ 206 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVV 206 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceE
Confidence 11 11222333 5688889999999999999999887763 33443
No 227
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=4.3e-08 Score=98.81 Aligned_cols=269 Identities=14% Similarity=0.069 Sum_probs=165.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCce------------EE-EEeCCCEEEEEcCCcEEEEECCCCceE-EecC
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------------GC-MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSG 227 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------~~-~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~ 227 (434)
+..|+.++.++.|.-+|..+|+.+-.+...... .. ...++.+++...++.|..+|.++++.+ ....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 566777888999999999999999888654321 11 123444444455899999999999876 3222
Q ss_pred CC----CcEE-EEEEeCCEEEEEeC------CCcEEEEEcCCCCCccccceee-c-------------------------
Q 013881 228 PV----GQVY-AMAVGNDLLFAGTQ------DGAILAWKFNVTTNCFEPAASL-K------------------------- 270 (434)
Q Consensus 228 ~~----~~v~-~l~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~-~------------------------- 270 (434)
.. ..+. ......+.++++.. +|.|..+|..+++..++..... .
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~ 225 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeee
Confidence 10 1111 11223556666654 5899999999885432211000 0
Q ss_pred -CccceEEEEEEC--CCEEEEecCCC-------------------cEEEEeCCCCeEEEEEcc--cc-------ccE--E
Q 013881 271 -GHSLAVVSLVVG--ANKLYSGSMDN-------------------SIRVWNLETLQCIQTLTE--HT-------SVV--M 317 (434)
Q Consensus 271 -~h~~~v~~l~~~--~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v--~ 317 (434)
++......++++ .++++.++.++ .|..+|.++++.+..++. |. .+. .
T Consensus 226 ~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~ 305 (668)
T 1kv9_A 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLA 305 (668)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEE
Confidence 000011124453 56888887776 399999999999888764 22 222 2
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEcCCCCceEEEeeecC----------CccEE------------------------E
Q 013881 318 SLLCWDQ---FLLSCSLDKTIKVWFATDSGNLEVTYTHNE----------EHGVL------------------------A 360 (434)
Q Consensus 318 ~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~------------------------~ 360 (434)
.+.+.++ .++.++.+|.++++|..+++.+........ ...+. .
T Consensus 306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~ 385 (668)
T 1kv9_A 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHS 385 (668)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSC
T ss_pred EeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCc
Confidence 3444554 688999999999999998876643321110 00000 0
Q ss_pred EEeccCCCCCcEEEE------------------------------------EeCCCeEEEEeCCCCcccccccccCcEEE
Q 013881 361 LCGMPDSEGKPVLLC------------------------------------SCNDNSVRFYDLPSFAERGKIFAKQEIRA 404 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~------------------------------------~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 404 (434)
+++.|. .+ ++++ ...+|.|..||+.+++.+.+.........
T Consensus 386 ~a~dp~--~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 462 (668)
T 1kv9_A 386 MSFNPG--TG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNG 462 (668)
T ss_dssp CEEETT--TT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred ceECCC--CC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcC
Confidence 122221 11 2222 11348899999999998877665444443
Q ss_pred EEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 405 IQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 405 ~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
..+...+ ++++++.||.|++||..+|+++
T Consensus 463 ~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 463 GTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3344445 8888999999999999999864
No 228
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=2.5e-07 Score=91.32 Aligned_cols=282 Identities=12% Similarity=0.063 Sum_probs=170.6
Q ss_pred eCCcEEEecC-CCeEEEEeC-CCCceEEEEecCccc-cE----------EEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 118 VQGNCMYGEK-CKFLHSWTV-GDGFKLLTQLEGHQK-VV----------SGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 118 ~~~~~~~g~~-d~~i~vwd~-~~~~~~~~~l~~h~~-~V----------~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
..+.+++++. ++.|+.+|. .+| +.+.++..... .+ ..+++ ++..++.++.|+.|..+|..+|+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 4667777777 899999999 898 66666543221 00 11222 456788889999999999999999
Q ss_pred EEEEecCC-----ceE--EEEeCCCEEEEEc-------CCcEEEEECCCCceE-EecCCCCc------------------
Q 013881 185 AGVINLGG-----EVG--CMISEGPWIFIGV-------TNFVKAWNTQTNTDL-SLSGPVGQ------------------ 231 (434)
Q Consensus 185 ~~~~~~~~-----~~~--~~~~~~~~l~~~~-------~~~i~~w~~~~~~~~-~~~~~~~~------------------ 231 (434)
+-.+.... .+. .+..++ .++++. ++.|..+|.++++.+ ........
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 98877643 111 112344 444443 579999999999876 22211100
Q ss_pred -------------------E-EEEEEeCC--EEEEEeCC----------------CcEEEEEcCCCCCccccceeecCc-
Q 013881 232 -------------------V-YAMAVGND--LLFAGTQD----------------GAILAWKFNVTTNCFEPAASLKGH- 272 (434)
Q Consensus 232 -------------------v-~~l~~~~~--~l~~g~~d----------------g~i~vwd~~~~~~~~~~~~~~~~h- 272 (434)
+ ..+++.++ .++.++.+ +.|..+|..+++..+.. ....|
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~--~~~~~d 294 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY--QKTPHD 294 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE--ESSTTC
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe--cCCCCc
Confidence 0 12455554 66666532 35999999887432211 11111
Q ss_pred -------cceE-EEEEECCC---EEEEecCCCcEEEEeCCCCeEEEEEcccc-------------ccE------------
Q 013881 273 -------SLAV-VSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------------SVV------------ 316 (434)
Q Consensus 273 -------~~~v-~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------~~v------------ 316 (434)
..++ .....+++ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 2233 22334563 57788999999999999999887664321 111
Q ss_pred --------------EEEEEc--CCEEEEEe-------------------------------------CCCcEEEEEcCCC
Q 013881 317 --------------MSLLCW--DQFLLSCS-------------------------------------LDKTIKVWFATDS 343 (434)
Q Consensus 317 --------------~~l~~~--~~~l~s~s-------------------------------------~dg~i~vwd~~~~ 343 (434)
..++++ ..+|++.. .++.|..||+.++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 112333 23444432 3578999999888
Q ss_pred CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcE--EEEEecCCc
Q 013881 344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEI--RAIQLGPGG 411 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~spdg 411 (434)
+.+........... ..+ .. .++ ++++++.|+.|+.+|..+++.+.++.....+ ..+.+..+|
T Consensus 455 ~~~W~~~~~~~~~~-~~~--~t--~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 455 KAKWTKWEKFAAWG-GTL--YT--KGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp CEEEEEEESSCCCS-BCE--EE--TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CEEEEecCCCCccc-eeE--EE--CCC-EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECC
Confidence 76655543221111 111 11 122 6777899999999999999998877653332 223355677
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.00 E-value=1.9e-06 Score=77.73 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=133.9
Q ss_pred EecCccccEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe--CCCEEEEEcCCcEEEEECCCCc
Q 013881 145 QLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 145 ~l~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
.+..+..--.+..|++++ .++++...++.|..||..+++. ..+.....+.++.. ++.+ +++.++.|.+||.++++
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l-~v~~~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGY-VATIGTKFCALNWKEQS 84 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSE-EEEETTEEEEEETTTTE
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCE-EEEECCeEEEEECCCCc
Confidence 344455566788899854 5566666789999999988765 45566666666654 5664 44457889999998887
Q ss_pred eEEecC-----CCCcEEEEEEeCC-EEEEEe-C---------CCcEEEEEcCCCCCccccceeecCccceEEEEEEC--C
Q 013881 222 DLSLSG-----PVGQVYAMAVGND-LLFAGT-Q---------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (434)
Q Consensus 222 ~~~~~~-----~~~~v~~l~~~~~-~l~~g~-~---------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 283 (434)
...+.. ....+..++++++ .+..++ . ...-.+|.+.... + ...+..+......++++ +
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~-~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---H-VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---C-EEEEEEEESBEEEEEECTTS
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---C-EEEEeeccccccceEEcCCC
Confidence 653322 2346889999988 333333 1 1334556555332 1 11222233345677775 4
Q ss_pred CEE-EEecCCCcEEEEeC--CCCeE-----EEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeec
Q 013881 284 NKL-YSGSMDNSIRVWNL--ETLQC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353 (434)
Q Consensus 284 ~~l-~s~s~dg~i~vwd~--~~~~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 353 (434)
+.| ++.+.++.|.+||+ .+++. +..+..+......++++ +++.++....+.|.+||..+++.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 555 56667889999987 45543 22333344567788887 5666666677889999988776665554432
Q ss_pred CCccEEEEEec
Q 013881 354 EEHGVLALCGM 364 (434)
Q Consensus 354 ~~~~~~~~~~~ 364 (434)
..+.+++|.
T Consensus 241 --~~~t~~~f~ 249 (297)
T 3g4e_A 241 --DKTTSCCFG 249 (297)
T ss_dssp --SBEEEEEEE
T ss_pred --CCceEEEEe
Confidence 357778876
No 230
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.99 E-value=3.1e-07 Score=90.73 Aligned_cols=269 Identities=14% Similarity=0.096 Sum_probs=159.8
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCceEEEEecCCce------------EEEEeCCCEEEE-EcCCcEEEEECCCCceE-Ee
Q 013881 162 SDKLYSGSK-DETVRVWDC-ASGQCAGVINLGGEV------------GCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SL 225 (434)
Q Consensus 162 ~~~l~s~s~-dg~v~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~i~~w~~~~~~~~-~~ 225 (434)
+..|+.++. ++.|.-+|. .+|+.+-.+...... ......+..+++ ..++.+..+|..+++.+ ..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 456666777 889999999 899998887654321 111223444444 46889999999999876 22
Q ss_pred c--CCC--CcEE-EEEEeCCEEEEEeC------CCcEEEEEcCCCCCccccceeecC-----------------------
Q 013881 226 S--GPV--GQVY-AMAVGNDLLFAGTQ------DGAILAWKFNVTTNCFEPAASLKG----------------------- 271 (434)
Q Consensus 226 ~--~~~--~~v~-~l~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~----------------------- 271 (434)
. .+. ..+. +.....+.+++++. ++.|..+|..+++..++....-..
T Consensus 142 ~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~ 221 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGT 221 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHH
T ss_pred cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccccc
Confidence 2 111 0111 11234556777665 799999999988543211100000
Q ss_pred ---------c-cceE-EEEEEC--CCEEEEecCC----------------CcEEEEeCCCCeEEEEEccc----------
Q 013881 272 ---------H-SLAV-VSLVVG--ANKLYSGSMD----------------NSIRVWNLETLQCIQTLTEH---------- 312 (434)
Q Consensus 272 ---------h-~~~v-~~l~~~--~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~~~~---------- 312 (434)
+ ...+ ..++++ .+.++.+..+ +.|..+|.++++.+..++..
T Consensus 222 ~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~ 301 (571)
T 2ad6_A 222 KTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGV 301 (571)
T ss_dssp HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred ccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccC
Confidence 0 0000 123343 3566665532 36999999999998877532
Q ss_pred cccEE-EEEEcC---CEEEEEeCCCcEEEEEcCCCCceEEEeeecCC-----------ccEE------------------
Q 013881 313 TSVVM-SLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE-----------HGVL------------------ 359 (434)
Q Consensus 313 ~~~v~-~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~~------------------ 359 (434)
..++. ....++ ..++.++.+|.+.++|..+++.+......... ..+.
T Consensus 302 ~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~ 381 (571)
T 2ad6_A 302 NQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPS 381 (571)
T ss_dssp CCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSC
T ss_pred CCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCC
Confidence 12222 222235 35778889999999999888766554322100 0000
Q ss_pred --------EEEeccCCCCCcEEEEEe-------------------------------------CCCeEEEEeCCCCcccc
Q 013881 360 --------ALCGMPDSEGKPVLLCSC-------------------------------------NDNSVRFYDLPSFAERG 394 (434)
Q Consensus 360 --------~~~~~~~~~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~~~ 394 (434)
.+++.|. .+ ++++.. .++.|..||+.+++.+.
T Consensus 382 ~~Gg~~w~~~a~dp~--~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 382 AMGFHNQGVDSYDPE--SR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp TTCSSCSCBCEEETT--TT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CccccCCCCceECCC--CC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 1122221 12 344332 35789999999999887
Q ss_pred cccccCcEEEEEecC-CcEEEEeCCCCCEEEEEccCCccc
Q 013881 395 KIFAKQEIRAIQLGP-GGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 395 ~~~~~~~v~~~~~sp-dg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
++.....+....+.. +++++.++.||.|+.||..+|+++
T Consensus 459 ~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 459 TKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 776544433333332 447777999999999999999864
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.98 E-value=1.2e-07 Score=86.00 Aligned_cols=226 Identities=15% Similarity=0.071 Sum_probs=130.7
Q ss_pred EEecCccccEEEEEccCCCC-EEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 144 TQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
..+..+........|+++++ ++++...++.|..|+. +++. ..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~----------------------------------- 80 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DV----------------------------------- 80 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EE-----------------------------------
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EE-----------------------------------
Confidence 33444555677899999998 5667777889999987 4442 21
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccce-eecCc-cceEEEEEEC--CCEEEE----ecC-
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGH-SLAVVSLVVG--ANKLYS----GSM- 291 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~h-~~~v~~l~~~--~~~l~s----~s~- 291 (434)
+..+...+..++++++ ++++...++.|.+|+.. +.. ..+. ...+. ...+..+.++ ++.+++ |..
T Consensus 81 --~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~--~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~ 155 (305)
T 3dr2_A 81 --LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA--HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK 155 (305)
T ss_dssp --EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred --EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE--EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence 1123445677888777 44444445778888765 311 1111 11111 1224456665 455554 332
Q ss_pred ------------CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC------CcEEEEEcCCCCceEEEee
Q 013881 292 ------------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD------KTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 292 ------------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~ 351 (434)
.+.|..+|..+++..... .......++++ ++.|+.+... +.|.+|++.... +.....
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~ 232 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH 232 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE
T ss_pred cccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE
Confidence 356888888776654433 34455678887 5567776665 789999987554 211111
Q ss_pred e--cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCC
Q 013881 352 H--NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 352 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg 420 (434)
. ........+++.++ ++ |.++..+ .|.+|+. .++.+..+.....+..++|++++ .|..++.++
T Consensus 233 ~~~~~~~~pdgi~~d~~---G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRG---GW-LWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EECCSSSCCCSEEECTT---SC-EEECCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred EEECCCCCCCeEEECCC---CC-EEEecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 1 01111223444332 32 4455444 5999998 46666666555568899999998 777666654
No 232
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.97 E-value=2.4e-07 Score=91.59 Aligned_cols=283 Identities=13% Similarity=0.106 Sum_probs=160.0
Q ss_pred eCCcEEEecC-CCeEEEEeC-CCCceEEEEecCcccc-----------EEEEEccCCCCE----EEEEECCCcEEEEECC
Q 013881 118 VQGNCMYGEK-CKFLHSWTV-GDGFKLLTQLEGHQKV-----------VSGITLPSGSDK----LYSGSKDETVRVWDCA 180 (434)
Q Consensus 118 ~~~~~~~g~~-d~~i~vwd~-~~~~~~~~~l~~h~~~-----------V~~l~~s~~~~~----l~s~s~dg~v~iwd~~ 180 (434)
..+.+++++. ++.|+.+|. .+| +.+.++...... ...++++|.+.. |+.++.|+.|.-+|..
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 3566777777 899999999 898 676666533210 123445444444 8888889999999999
Q ss_pred CCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEe------CCCcEEEE
Q 013881 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT------QDGAILAW 254 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~------~dg~i~vw 254 (434)
+|+.+-......... + ......+ .+..+.+++++ .+|.|+.+
T Consensus 140 TG~~~W~~~~~~~~~------------------------~----~~~~ssP----~v~~g~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 140 TGETVWKVENSDIKV------------------------G----STLTIAP----YVVKDKVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp TCCEEEEEECCCGGG------------------------T----CBCCSCC----EEETTEEEECCBCGGGTCCCEEEEE
T ss_pred CCCEEEeecCCCCCc------------------------c----ceeecCC----EEECCEEEEEecccccCCCCeEEEE
Confidence 998876544321000 0 0000011 11234555554 36788888
Q ss_pred EcCCCCCccccceeecC--------------------------------c-cce---EEEEEECCCEEEEecCC------
Q 013881 255 KFNVTTNCFEPAASLKG--------------------------------H-SLA---VVSLVVGANKLYSGSMD------ 292 (434)
Q Consensus 255 d~~~~~~~~~~~~~~~~--------------------------------h-~~~---v~~l~~~~~~l~s~s~d------ 292 (434)
|..+++..++....-.. + ... ..++....++++.+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 88777432211100000 0 000 11233345677777655
Q ss_pred ----------CcEEEEeCCCCeEEEEEcccc----------ccEE-EEE-EcC---CEEEEEeCCCcEEEEEcCCCCceE
Q 013881 293 ----------NSIRVWNLETLQCIQTLTEHT----------SVVM-SLL-CWD---QFLLSCSLDKTIKVWFATDSGNLE 347 (434)
Q Consensus 293 ----------g~i~vwd~~~~~~~~~~~~~~----------~~v~-~l~-~~~---~~l~s~s~dg~i~vwd~~~~~~~~ 347 (434)
+.|..+|.++++.+..++... .++. .+. ..+ ..++.++.+|.+.++|.++++.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 389999999999987776422 1222 111 235 467778899999999999887665
Q ss_pred EEeeecC----------C-ccEE--------------------------EEEeccCCC----------------------
Q 013881 348 VTYTHNE----------E-HGVL--------------------------ALCGMPDSE---------------------- 368 (434)
Q Consensus 348 ~~~~~~~----------~-~~~~--------------------------~~~~~~~~~---------------------- 368 (434)
....... . ..+. .+++.|...
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 5432110 0 0000 011111100
Q ss_pred CCcEE------EE--Ee------CCCeEEEEeCCCCcccccccccCcEEEEEec-CCcEEEEeCCCCCEEEEEccCCccc
Q 013881 369 GKPVL------LC--SC------NDNSVRFYDLPSFAERGKIFAKQEIRAIQLG-PGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 369 ~~~~l------~~--~~------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s-pdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
+..++ .. .+ .+|.|..||+.+++.+-+.....++..-.+. ..++++.++.||.|+.||.++|+++
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 00011 11 01 3578999999999887776543332211122 2347788999999999999999864
No 233
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=4.8e-06 Score=85.73 Aligned_cols=313 Identities=13% Similarity=0.024 Sum_probs=190.1
Q ss_pred cceEEEEEe-CCcEEEecCCCeEEEEeCCCCceEEEEecC-------ccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 110 TDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 110 ~~i~c~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~-------h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
..|.++... .+.+..|+.. -|.+||..++ +....... ....|.+|...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 467888774 4568888776 6899998775 33222111 235799999888776 44566645589999887
Q ss_pred CceEEEEe---------------cCCceEEEEe--CCCEEEEEcCCcEEEEECCCCceEEecC----------CCCcEEE
Q 013881 182 GQCAGVIN---------------LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSG----------PVGQVYA 234 (434)
Q Consensus 182 ~~~~~~~~---------------~~~~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~~~----------~~~~v~~ 234 (434)
++...... ....+.++.. .+.+.+...++.|..++........+.. ....|.+
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence 65433221 1234566654 4455555557889999987765443321 2356999
Q ss_pred EEEeCC-EEEEEeCCCcEEEEEcCCCCCccccce-eecCccceEEEEEEC-CCEEEEecCCCcEEEEeCCCCeEEEEEc-
Q 013881 235 MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLT- 310 (434)
Q Consensus 235 l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~- 310 (434)
+...++ .|..|+.++-|..|+..+... .... ........|.++..+ ...|..|+.++-|..+|..+++......
T Consensus 368 i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 368 VCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE 445 (781)
T ss_dssp EEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred EEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence 998876 778888777899998765311 1110 011234568888887 4567778887889999988766433221
Q ss_pred -cccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeee---cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEE
Q 013881 311 -EHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH---NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (434)
Q Consensus 311 -~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 385 (434)
.....|.++..+ ...|..|+. +-|..||..+.......... .....+.++.... ++ .|..|+.++-|..|
T Consensus 446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g--~lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS--EG--RFWIGTFGGGVGIY 520 (781)
T ss_dssp TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT--TC--CEEEEESSSCEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC--CC--CEEEEEcCCCEEEE
Confidence 234678888887 567777777 66889988765432222111 0123466665433 22 25566664457788
Q ss_pred eCCCCcccccc----cccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 386 DLPSFAERGKI----FAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 386 d~~~~~~~~~~----~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
|..+.+..... .....|.++...++|.|..++.+|.|..||..++++
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY 571 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE
Confidence 88765432211 124578999999999444444466557887766543
No 234
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=3.4e-06 Score=86.90 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=190.1
Q ss_pred cceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEecC-------ccccEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 013881 110 TDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (434)
Q Consensus 110 ~~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~-------h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (434)
..|.++.. ..+.+..|+.++-|..||..++ +....... ....|.+|...+++.+.+. +.+ -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDK-SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTT-EEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCC-ceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 45788777 4677888887767999998876 33221111 1357999998888876554 445 499999887
Q ss_pred CceEEEEe--------cCCceEEEEe-CCCEEEEEcC-CcEEEEECCCCceEEec---------------CCCCcEEEEE
Q 013881 182 GQCAGVIN--------LGGEVGCMIS-EGPWIFIGVT-NFVKAWNTQTNTDLSLS---------------GPVGQVYAMA 236 (434)
Q Consensus 182 ~~~~~~~~--------~~~~~~~~~~-~~~~l~~~~~-~~i~~w~~~~~~~~~~~---------------~~~~~v~~l~ 236 (434)
++...... ....+.++.. ....+.++.. +.|.+++..+....... -....|.++.
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~ 319 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF 319 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE
Confidence 75443221 1234666654 3445555554 78899998876543221 1345789998
Q ss_pred EeCC-EEEEEeCCCcEEEEEcCCCCCcccccee-------ecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEE
Q 013881 237 VGND-LLFAGTQDGAILAWKFNVTTNCFEPAAS-------LKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQ 307 (434)
Q Consensus 237 ~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~ 307 (434)
...+ .|-+|+.++-|..++...... ..... .......|.++..+. ..|..|+.++-|..||..+++...
T Consensus 320 ~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 397 (781)
T 3v9f_A 320 QDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY 397 (781)
T ss_dssp ECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC
T ss_pred EeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE
Confidence 8877 788888888899998765421 11110 011235688888875 567788877789999987654322
Q ss_pred EE---ccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEee-ecCCccEEEEEeccCCCCCcEEEEEeCCCeE
Q 013881 308 TL---TEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (434)
Q Consensus 308 ~~---~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 382 (434)
.. ......|.++..+ ...|..|+.++-|..+|..+.. ...+.. ......+.++.... + + .|..|+. +-|
T Consensus 398 ~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~--~-g-~lwigt~-~Gl 471 (781)
T 3v9f_A 398 NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDK--N-K-KIWIGTH-AGV 471 (781)
T ss_dssp C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECT--T-S-EEEEEET-TEE
T ss_pred ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECC--C-C-CEEEEEC-Cce
Confidence 11 1234668888887 5677778887889999876542 222211 11223466655432 2 2 4666666 568
Q ss_pred EEEeCCCCccccccc------ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCc
Q 013881 383 RFYDLPSFAERGKIF------AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 383 ~iwd~~~~~~~~~~~------~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~ 431 (434)
..||..+++...... ....|.++...++|.|..|+.++-|..|+..+++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 899987754332211 1367999999999944445543347778776554
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=1.3e-08 Score=94.27 Aligned_cols=246 Identities=12% Similarity=0.040 Sum_probs=154.4
Q ss_pred cEEEEECCCCceEEEEecCCceE-EEEeCCCEEEEEc-----------CCcEEEEECCCCceE-EecCC-------CCcE
Q 013881 173 TVRVWDCASGQCAGVINLGGEVG-CMISEGPWIFIGV-----------TNFVKAWNTQTNTDL-SLSGP-------VGQV 232 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-----------~~~i~~w~~~~~~~~-~~~~~-------~~~v 232 (434)
+|.+.|..+++.+.++..+.... .+.++++.++++. ++.|.+||..+.+.. .+.-+ ....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 78899999999999998765542 2334777777764 578999999999877 33211 1234
Q ss_pred EEEEEeCC--EEEEEeC--CCcEEE--EEcCCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCC---
Q 013881 233 YAMAVGND--LLFAGTQ--DGAILA--WKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLET--- 302 (434)
Q Consensus 233 ~~l~~~~~--~l~~g~~--dg~i~v--wd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~--- 302 (434)
..+.++|+ +++++.. +..|.+ +|..+. ..+. ..+ ...+..++ ..+++.+.|+.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv----~~i~-v~~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDD----QLTK-SAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEE----EEEE-CSS----CCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc----eEEE-CCC----ceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 57888888 6666654 466888 777551 1111 111 01123343 4567778899999999987
Q ss_pred --CeEEEE----EccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCce-EEEeeec------C---CccEEEEEeccC
Q 013881 303 --LQCIQT----LTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL-EVTYTHN------E---EHGVLALCGMPD 366 (434)
Q Consensus 303 --~~~~~~----~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~------~---~~~~~~~~~~~~ 366 (434)
++.+.. +.....+. . ...+..++..+. +.|.+.|+...... ....... . ......+.+.++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred cCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443321 11122333 2 223566666666 99999998653211 1101000 0 000111445554
Q ss_pred CCCCcEEEEE-e---C-----CCeEEEEeCCCCcccccccccCcEEEEEecCCc--EEEEeC-CCCCEEEEEccCCccc
Q 013881 367 SEGKPVLLCS-C---N-----DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG--LFFTGD-GTGQVRVWQWCNGPVA 433 (434)
Q Consensus 367 ~~~~~~l~~~-~---~-----dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg--~l~s~~-~dg~i~iwd~~~g~~~ 433 (434)
.. .++++ . . ++.+.++|+.+.+.+..+........|+|+||| ++++.. .++.|.++|+.+++++
T Consensus 275 g~---~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TD---GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TT---EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CC---EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 33 44443 3 1 235669999999999988877789999999999 456666 5999999999998865
No 236
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.93 E-value=1.3e-06 Score=82.63 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=138.7
Q ss_pred ceEEEEEeCCc-EEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCC--cEEEEECCCCceEE
Q 013881 111 DILCRNWVQGN-CMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAG 186 (434)
Q Consensus 111 ~i~c~~~~~~~-~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~ 186 (434)
....++|.++. ++.+. .++.|++||..++ +.......... .. ++|+++++.|+++..++ .|.+++...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 55678886554 44443 5589999999987 55555544332 33 99999999999998876 79999987766544
Q ss_pred EE----e-cCCceEEE--EeCCCEEEE-EcCCcEEEEECCCCceEEe-----cCCCCcE-E-EEEEeCC---EEEEEeCC
Q 013881 187 VI----N-LGGEVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDLSL-----SGPVGQV-Y-AMAVGND---LLFAGTQD 248 (434)
Q Consensus 187 ~~----~-~~~~~~~~--~~~~~~l~~-~~~~~i~~w~~~~~~~~~~-----~~~~~~v-~-~l~~~~~---~l~~g~~d 248 (434)
.+ . ....+..+ .+.+..|++ ..++.|..|+..++....+ .++...- . .++|+++ ++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 2 12222223 332444444 3467899999988765433 1222222 2 8999984 55666678
Q ss_pred CcEEEEEcCCCCCccccceeecCc---------------cceEEEEEEC--CCEEEEec-CCCcEEEEeCCCCeEEEEEc
Q 013881 249 GAILAWKFNVTTNCFEPAASLKGH---------------SLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQTLT 310 (434)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~--~~~l~s~s-~dg~i~vwd~~~~~~~~~~~ 310 (434)
+.|+.|+.... ...+.++ -.....++++ ++++++-. .++.|+.||+.+++. ..+.
T Consensus 289 ~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 289 SSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp TEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred CEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence 89999987643 1111111 1235677776 55666767 789999999888764 3443
Q ss_pred cc---------------cccEEEEEEc--CCEEEEEeCCCcEEEEEc
Q 013881 311 EH---------------TSVVMSLLCW--DQFLLSCSLDKTIKVWFA 340 (434)
Q Consensus 311 ~~---------------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~ 340 (434)
++ -.....++++ +.++++-..++.|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33 1346777777 345555556677777654
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=2.6e-06 Score=74.67 Aligned_cols=208 Identities=11% Similarity=0.028 Sum_probs=141.8
Q ss_pred eEEEEecCccc--cEEEEEccCCCCEEEEEEC--CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEE
Q 013881 141 KLLTQLEGHQK--VVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216 (434)
Q Consensus 141 ~~~~~l~~h~~--~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~ 216 (434)
+.+.++. |.. ....|+|++++.+.++.+. ++.|++.|+.+++.+..+..+.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------ 64 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------ 64 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------------------------
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------------------------
Confidence 5666664 543 3689999998755555443 5799999999999887765321
Q ss_pred CCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcE
Q 013881 217 TQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSI 295 (434)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i 295 (434)
......+++..+ +.++.-.++.+.++|..+. +.+..+......-..++++++.++++..++.|
T Consensus 65 ------------~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~----~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l 128 (266)
T 2iwa_A 65 ------------SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL----SNIKNFTHQMKDGWGLATDGKILYGSDGTSIL 128 (266)
T ss_dssp ------------TCCEEEEEEETTEEEEEETTCSEEEEEETTTT----EEEEEEECCSSSCCEEEECSSSEEEECSSSEE
T ss_pred ------------CcceEEEEEeCCEEEEEEecCCEEEEEECCCC----cEEEEEECCCCCeEEEEECCCEEEEECCCCeE
Confidence 112234566666 4444556789999998876 44444432112235578888877777778999
Q ss_pred EEEeCCCCeEEEEEccccc-----cEEEEEEcCCEEEEEe-CCCcEEEEEcCCCCceEEEeeec-----------CCccE
Q 013881 296 RVWNLETLQCIQTLTEHTS-----VVMSLLCWDQFLLSCS-LDKTIKVWFATDSGNLEVTYTHN-----------EEHGV 358 (434)
Q Consensus 296 ~vwd~~~~~~~~~~~~~~~-----~v~~l~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~ 358 (434)
.++|..+.+.+..+..... ....+.+.+..+.+.. .++.|.+.|..+++.+..+.... .....
T Consensus 129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred EEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 9999999998888764321 3556676655555555 57899999999988777665421 11245
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 391 (434)
..+++.++. +++++++...+.|.+.++....
T Consensus 209 nGIa~~~~~--~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 209 NGIAWDQEN--KRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEEETTT--TEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEEcCCC--CEEEEECCCCCeEEEEEEeccc
Confidence 778887654 3578888888999999886543
No 238
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.91 E-value=8.5e-07 Score=87.66 Aligned_cols=287 Identities=13% Similarity=0.070 Sum_probs=173.3
Q ss_pred eCCcEEEecCCCeEEEEeCCCCceEEEEecCccccE---------EEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV---------SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 118 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V---------~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
.++.+++++.++.|+.+|..+| +.+.++......- ..+++ .+..++.++.|+.|.-+|..+|+.+-.+
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTG-KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSC-CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCC-cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 4566777776555999999999 7766665432210 11122 3567888899999999999999998887
Q ss_pred ecCCc-----eE--EEEeCC----C-EEEEEc-------CCcEEEEECCCCceE-EecCCCCcE----------------
Q 013881 189 NLGGE-----VG--CMISEG----P-WIFIGV-------TNFVKAWNTQTNTDL-SLSGPVGQV---------------- 232 (434)
Q Consensus 189 ~~~~~-----~~--~~~~~~----~-~l~~~~-------~~~i~~w~~~~~~~~-~~~~~~~~v---------------- 232 (434)
..... +. -+..++ + .++++. ++.|..+|.++++.+ ........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 65431 11 112222 2 555543 678999999998876 222110000
Q ss_pred -------------------------EEEEEeCC--EEEEEeC--------------------C----CcEEEEEcCCCCC
Q 013881 233 -------------------------YAMAVGND--LLFAGTQ--------------------D----GAILAWKFNVTTN 261 (434)
Q Consensus 233 -------------------------~~l~~~~~--~l~~g~~--------------------d----g~i~vwd~~~~~~ 261 (434)
..++++++ +++.++. | +.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 12345544 6665553 2 5899999988854
Q ss_pred ccccceeecCc--------cceEEE-EE-ECCC---EEEEecCCCcEEEEeCCCCeEEEEEccccc-------------c
Q 013881 262 CFEPAASLKGH--------SLAVVS-LV-VGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS-------------V 315 (434)
Q Consensus 262 ~~~~~~~~~~h--------~~~v~~-l~-~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------------~ 315 (434)
.+.. ....| ..++.. .. .+++ .++.++.+|.++++|.++++.+..+..... +
T Consensus 304 ~W~~--q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 304 KWFY--QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEEE--ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEEE--eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCE
Confidence 3221 11122 123322 11 3453 688899999999999999998876654320 0
Q ss_pred E--------------------------------EEEEEc--CCEEEEEe-------------------------------
Q 013881 316 V--------------------------------MSLLCW--DQFLLSCS------------------------------- 330 (434)
Q Consensus 316 v--------------------------------~~l~~~--~~~l~s~s------------------------------- 330 (434)
+ ..++++ ...+++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0 012233 12333222
Q ss_pred --CCCcEEEEEcCCCCceEEEeeecCC-ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEE--E
Q 013881 331 --LDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRA--I 405 (434)
Q Consensus 331 --~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~ 405 (434)
.+|.|..||+.+++.+......... ...... .++ +++.++.|+.|+.||.++++++.++.....+.+ +
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~ 534 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------AGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI 534 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE------TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCcceEEEEECCCCCEEEEecCCCCCcccceEe------CCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCce
Confidence 2578999999888766554432211 111111 122 778899999999999999999988776444432 5
Q ss_pred EecCCc--EEEEe
Q 013881 406 QLGPGG--LFFTG 416 (434)
Q Consensus 406 ~~spdg--~l~s~ 416 (434)
.+..+| ++++.
T Consensus 535 ~y~~~G~qYv~~~ 547 (582)
T 1flg_A 535 TWEQDGEQYLGVT 547 (582)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 666788 55543
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=1.4e-06 Score=76.44 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=135.2
Q ss_pred cEEEEEEeCC-EEEEEeC---CCcEEEEEcCCCCCccccceeec-CccceEEEEEECCCEEEE-ecCCCcEEEEeCCCCe
Q 013881 231 QVYAMAVGND-LLFAGTQ---DGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGANKLYS-GSMDNSIRVWNLETLQ 304 (434)
Q Consensus 231 ~v~~l~~~~~-~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s-~s~dg~i~vwd~~~~~ 304 (434)
....+.|+++ .|+.++. ++.|.++|+.++ +.+..+. +.......++++++.|+. .-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg----~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG----KVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC----CEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC----CEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc
Confidence 4678999985 5555442 589999999987 3344432 122233456777776554 4567899999999999
Q ss_pred EEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc---cEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH---GVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
.+.++......-..++.+++.++++..++.|.++|..+.+....+....... ....+.+. + +.+.+....++.
T Consensus 98 v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d---g~lyvn~~~~~~ 173 (266)
T 2iwa_A 98 NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N---GEVWANIWQTDC 173 (266)
T ss_dssp EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T---TEEEEEETTSSE
T ss_pred EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C---CEEEEecCCCCe
Confidence 9998864312235577888877777788999999998887766665443211 24455554 2 234555546789
Q ss_pred EEEEeCCCCccccccccc--------------CcEEEEEecCCc--EEEEeCCCCCEEEEEccCC
Q 013881 382 VRFYDLPSFAERGKIFAK--------------QEIRAIQLGPGG--LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~~--------------~~v~~~~~spdg--~l~s~~~dg~i~iwd~~~g 430 (434)
|.+.|..+++.+..+... .....|+|+|++ .++++...+.|.+.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999887776531 356899999998 7788888999999988754
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.90 E-value=1.8e-07 Score=86.34 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=147.3
Q ss_pred cceEEEEEeC-CcEEEec---CCCeEEEEeCCCCceEEEEe-------cCccccEEEEEccCCCCEEEEEEC-----CCc
Q 013881 110 TDILCRNWVQ-GNCMYGE---KCKFLHSWTVGDGFKLLTQL-------EGHQKVVSGITLPSGSDKLYSGSK-----DET 173 (434)
Q Consensus 110 ~~i~c~~~~~-~~~~~g~---~d~~i~vwd~~~~~~~~~~l-------~~h~~~V~~l~~s~~~~~l~s~s~-----dg~ 173 (434)
....-+++++ +.++.+. .++.++||.+.++ ++. .+ .+|-..+..|+++++++++++-.. +..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-Cee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 3455667764 4454442 2232556655555 432 22 235578999999999876665433 578
Q ss_pred EEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEe---C
Q 013881 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGT---Q 247 (434)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~---~ 247 (434)
|.+||+.+++.+..+..... ...+...+..++++++ .+ ++.. .
T Consensus 95 i~~~d~~tg~~~~~~~~~~~-------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPP-------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp EEEEETTTTEEEEEEECCTT-------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred EEEEECCCCeEEEEEECChh-------------------------------hcccccccceEEEecCCCEEEEEcCccCC
Confidence 99999999887766543211 0122344567888853 44 4444 5
Q ss_pred CCcEEEEEcCCCCCccccceeecCccceE---EEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHSLAV---VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-- 322 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-- 322 (434)
++.|.+||+.++ +....+.+|.... ..+.+++..+.+.+.++.++.|.. .+..++++
T Consensus 144 ~~~i~v~d~~~g----~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~d 205 (343)
T 2qe8_A 144 KAALIRVDLQTG----LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAE 205 (343)
T ss_dssp GCEEEEEETTTC----CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTT
T ss_pred CCeEEEEECCCC----CEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--------------ccceeEeccC
Confidence 789999999866 3333343332110 234456667777778888766642 24567777
Q ss_pred CCEEEEEeCCC-cEEEEEcC---CCC--------ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 323 DQFLLSCSLDK-TIKVWFAT---DSG--------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 323 ~~~l~s~s~dg-~i~vwd~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
++.|+.+..++ .|..++.. ... .+. ...... ....+++.++ +.++++...++.|.+||..++
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g--~pdgia~d~~---G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKP--ICDGISIDKD---HNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECC--SCSCEEECTT---CCEEEEEGGGTEEEEEETTTT
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCC--CCceEEECCC---CCEEEEccCCCeEEEEECCCC
Confidence 56777777665 45444432 110 001 111111 2223555443 347888888899999998555
Q ss_pred ccccccc--ccCcEEEEEecCCc-EEEEeCCC
Q 013881 391 AERGKIF--AKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 391 ~~~~~~~--~~~~v~~~~~spdg-~l~s~~~d 419 (434)
+...... ....+..++|.+++ ++++.+..
T Consensus 280 ~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 280 AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 5322222 24568999999999 77776643
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.89 E-value=4.2e-06 Score=76.53 Aligned_cols=211 Identities=11% Similarity=0.017 Sum_probs=131.4
Q ss_pred EEEEEeCC--cE-EEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEe
Q 013881 113 LCRNWVQG--NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 113 ~c~~~~~~--~~-~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (434)
....|.++ .+ ++...++.|..||..++ +.. .+. +...|.+++|+++++++++. .++ |.+||..+++......
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASG-RKT-VHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT-EEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCC-cEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEEee
Confidence 34567653 33 34456789999999887 332 232 34689999999999877764 444 9999998887654433
Q ss_pred cC-----CceEEEE--eCCCEEEEEcC-------CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EE-EEEeCCCcEE
Q 013881 190 LG-----GEVGCMI--SEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAIL 252 (434)
Q Consensus 190 ~~-----~~~~~~~--~~~~~l~~~~~-------~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~ 252 (434)
.. ..+..+. +++.+.++... +.|..++ +++...+.........++|+++ .+ ++.+.++.|.
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 21 1233333 35666555432 3555566 4444433333445778999988 44 4556678999
Q ss_pred EEEcC--CC-CCc-cccceeecCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc---C
Q 013881 253 AWKFN--VT-TNC-FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---D 323 (434)
Q Consensus 253 vwd~~--~~-~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---~ 323 (434)
+|++. ++ ... .+....+.........+.++ +++.++...++.|.+||. +++.+..+..+...+.+++|. +
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA 283 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence 99986 33 111 01122222233455677775 455555556789999998 677778887777778999986 2
Q ss_pred CEEEEEeC
Q 013881 324 QFLLSCSL 331 (434)
Q Consensus 324 ~~l~s~s~ 331 (434)
+.|++++.
T Consensus 284 ~~L~vt~~ 291 (326)
T 2ghs_A 284 SRLLVTSA 291 (326)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEec
Confidence 45544443
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.87 E-value=7.2e-07 Score=90.56 Aligned_cols=230 Identities=13% Similarity=0.126 Sum_probs=139.9
Q ss_pred cccceEEEEEeCCcE-EE------ecCCCeEEEEeCCCCceEEEE-ecCccccEEEEEccCCCCEEEEEECCCc------
Q 013881 108 IKTDILCRNWVQGNC-MY------GEKCKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDET------ 173 (434)
Q Consensus 108 ~~~~i~c~~~~~~~~-~~------g~~d~~i~vwd~~~~~~~~~~-l~~h~~~V~~l~~s~~~~~l~s~s~dg~------ 173 (434)
+...+....|+++.. ++ |+....|++||+.++ +.+.. +.+ .....++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 334677788987752 22 333468999999998 44332 221 113578899 9999999988754
Q ss_pred -------EEEEECCCCce--EEEEecCC----ceE--EEEeCCCEEEEEc-----CCcEEEEECCCC--ceEEecCCCCc
Q 013881 174 -------VRVWDCASGQC--AGVINLGG----EVG--CMISEGPWIFIGV-----TNFVKAWNTQTN--TDLSLSGPVGQ 231 (434)
Q Consensus 174 -------v~iwd~~~~~~--~~~~~~~~----~~~--~~~~~~~~l~~~~-----~~~i~~w~~~~~--~~~~~~~~~~~ 231 (434)
|++|++.+... ...+.... ... ...+++++|+... .+.|.++++.++ ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 99999988753 33333332 122 2345777776532 248999999776 44556666555
Q ss_pred EEEE-EEeCC-EEEEEeCC---CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCC---cEEEEeCCCC
Q 013881 232 VYAM-AVGND-LLFAGTQD---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETL 303 (434)
Q Consensus 232 v~~l-~~~~~-~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg---~i~vwd~~~~ 303 (434)
.... ....+ +++....+ +.|..+++..... .....+..|...+..+++.++.|+....++ .|++||+..+
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 5443 23334 44454443 6799999887532 122344444444447777888776665443 6899998854
Q ss_pred eEEEEEcc-ccccEEEEEEc--CCEEEEEeCC----CcEEEEEcCCCC
Q 013881 304 QCIQTLTE-HTSVVMSLLCW--DQFLLSCSLD----KTIKVWFATDSG 344 (434)
Q Consensus 304 ~~~~~~~~-~~~~v~~l~~~--~~~l~s~s~d----g~i~vwd~~~~~ 344 (434)
. ...+.. ....+..+.++ ++.|+....+ ++|..||+.+++
T Consensus 361 ~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 444432 34455555554 4444444333 789999987654
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.86 E-value=1.1e-06 Score=86.77 Aligned_cols=267 Identities=15% Similarity=0.050 Sum_probs=155.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEEecCCce----------EE-EEeCCCEEEEEcCCcEEEEECCCCceE-EecCCC
Q 013881 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----------GC-MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPV 229 (434)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----------~~-~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~ 229 (434)
+..|+.++.++.|.-+|..+|+.+-.+...... .. ...++.+++...++.|..+|.++++.+ ......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 345555666444999999999998888765321 11 123444444556899999999999876 222111
Q ss_pred ----CcEE-EEEEeCC------EEEEEeC------CCcEEEEEcCCCCCccccceeecCc--------------------
Q 013881 230 ----GQVY-AMAVGND------LLFAGTQ------DGAILAWKFNVTTNCFEPAASLKGH-------------------- 272 (434)
Q Consensus 230 ----~~v~-~l~~~~~------~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~h-------------------- 272 (434)
..+. +-....+ .+++++. ++.|+.+|..+++..+..... ..+
T Consensus 148 ~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 148 HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTS
T ss_pred CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC-ccccccccCcccccccccccccC
Confidence 0111 1112233 6666653 789999999887543321100 000
Q ss_pred -----------------cceE-EEEEE--CCCEEEEecC--------------------C----CcEEEEeCCCCeEEEE
Q 013881 273 -----------------SLAV-VSLVV--GANKLYSGSM--------------------D----NSIRVWNLETLQCIQT 308 (434)
Q Consensus 273 -----------------~~~v-~~l~~--~~~~l~s~s~--------------------d----g~i~vwd~~~~~~~~~ 308 (434)
...+ ..+++ ..++++.+.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 0000 11233 3456665542 2 6899999999999988
Q ss_pred Ecc--cc--------ccEEEEEE---cC---CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEE-------------
Q 013881 309 LTE--HT--------SVVMSLLC---WD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL------------- 359 (434)
Q Consensus 309 ~~~--~~--------~~v~~l~~---~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------- 359 (434)
++. |. .++. +.. .+ ..++.++.+|.++++|..+++.+.............
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 753 21 2222 222 34 378889999999999999887765543321000000
Q ss_pred ------------------------------EEEeccCCCCCcEEEEEe--------------------------------
Q 013881 360 ------------------------------ALCGMPDSEGKPVLLCSC-------------------------------- 377 (434)
Q Consensus 360 ------------------------------~~~~~~~~~~~~~l~~~~-------------------------------- 377 (434)
.+++.| ..+ ++++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp--~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQ--DTG-LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECT--TTC-CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECC--CCC-EEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 011111 112 232221
Q ss_pred -CCCeEEEEeCCCCcccccccccCcEEEEEe-cCCcEEEEeCCCCCEEEEEccCCccc
Q 013881 378 -NDNSVRFYDLPSFAERGKIFAKQEIRAIQL-GPGGLFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 378 -~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-spdg~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+|.|..||+.+++.+.+......+..-.. ..+++++.++.||.|+.||.++|+++
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 368899999999998876654333322111 22448888999999999999999864
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.85 E-value=1.1e-07 Score=87.75 Aligned_cols=234 Identities=13% Similarity=0.063 Sum_probs=141.7
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEEC--CCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~ 218 (434)
+.+..+. ..+..|+++++++++++... ++.++||.+.+++.. .+....
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~-------------------------- 59 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS-------------------------- 59 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC--------------------------
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc--------------------------
Confidence 4555544 68899999999999888642 343556655444321 110000
Q ss_pred CCceEEecCCCCcEEEEEEeCC-EEEEEe-C-----CCcEEEEEcCCCCCccccceeec------CccceEEEEEEC--C
Q 013881 219 TNTDLSLSGPVGQVYAMAVGND-LLFAGT-Q-----DGAILAWKFNVTTNCFEPAASLK------GHSLAVVSLVVG--A 283 (434)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~-~l~~g~-~-----dg~i~vwd~~~~~~~~~~~~~~~------~h~~~v~~l~~~--~ 283 (434)
.....+...+..++++++ .|++.. . +..|.+||+.++ +.+..+. .+...+..++++ +
T Consensus 60 ----~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg----~~~~~~~~~~~~~~~~~~~~~v~vd~~~ 131 (343)
T 2qe8_A 60 ----GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN----QLSRVIYLPPPITLSNSFVNDLAVDLIH 131 (343)
T ss_dssp ----SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT----EEEEEEECCTTTSCTTCCCCEEEEETTT
T ss_pred ----cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC----eEEEEEECChhhcccccccceEEEecCC
Confidence 002245678999999987 444443 2 578999999876 3222222 122345677776 3
Q ss_pred CEE-EEec---CCCcEEEEeCCCCeEEEEEccccccE---EEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc
Q 013881 284 NKL-YSGS---MDNSIRVWNLETLQCIQTLTEHTSVV---MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356 (434)
Q Consensus 284 ~~l-~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~v---~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 356 (434)
..+ ++-. .++.|.+||+.+++..+.+..|.... ..+.+.+..+.+.+.++.++.|. .
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------~ 195 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------L 195 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------C
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------------c
Confidence 454 4444 57899999999998877776543211 22334466666677777776653 1
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCC-eEEEEeCCC---Cc-----ccccc---cccCcEEEEEecCCc-EEEEeCCCCCEE
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDN-SVRFYDLPS---FA-----ERGKI---FAKQEIRAIQLGPGG-LFFTGDGTGQVR 423 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~---~~-----~~~~~---~~~~~v~~~~~spdg-~l~s~~~dg~i~ 423 (434)
....++++++.. .|+.+..++ .|..++... +. ....+ .+......++++++| ++++...++.|.
T Consensus 196 ~~~gia~s~dg~---~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~ 272 (343)
T 2qe8_A 196 GVNGIVLDAENE---WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIG 272 (343)
T ss_dssp CEEEEEECTTSC---EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEE
T ss_pred ccceeEeccCCC---EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEE
Confidence 245677776543 666666555 555554321 10 01111 123345678999999 888888899999
Q ss_pred EEEccCCc
Q 013881 424 VWQWCNGP 431 (434)
Q Consensus 424 iwd~~~g~ 431 (434)
+||..+|+
T Consensus 273 ~~d~~~G~ 280 (343)
T 2qe8_A 273 VITSADRA 280 (343)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99985554
No 245
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.83 E-value=1.2e-06 Score=79.28 Aligned_cols=211 Identities=12% Similarity=0.096 Sum_probs=131.2
Q ss_pred eEEEEEeCC-c--EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 112 ILCRNWVQG-N--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 112 i~c~~~~~~-~--~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
.....|.++ . ++++..++.|..|+.. + + ...+..+...+..++++++++++++...++.|.+|+.. ++.....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence 445677554 3 4556678899999984 4 3 34445566789999999999977666666889999986 5533222
Q ss_pred ecC-C----ce--EEEEeCCCEEEE----Ec--------------CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--E
Q 013881 189 NLG-G----EV--GCMISEGPWIFI----GV--------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L 241 (434)
Q Consensus 189 ~~~-~----~~--~~~~~~~~~l~~----~~--------------~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~ 241 (434)
... . .+ ..+..++.+.++ +. .+.|..++..+++...+. .......++|+++ .
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQT 201 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSE
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCE
Confidence 211 1 11 223346666664 22 246777887766655444 5556788999998 5
Q ss_pred EEEEeCC------CcEEEEEcCCCCCccccceee-cCccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccc
Q 013881 242 LFAGTQD------GAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEH 312 (434)
Q Consensus 242 l~~g~~d------g~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 312 (434)
|+.+... +.|.+|++.... ......+ .........+.++ ++ |++++.+ .|.+||. +++.+..+..+
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~ 276 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTP 276 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECS
T ss_pred EEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECC
Confidence 6666554 789999987542 0111111 1112223345554 45 5555555 4999998 57777777655
Q ss_pred cccEEEEEEc--CCEEEEEeCCC
Q 013881 313 TSVVMSLLCW--DQFLLSCSLDK 333 (434)
Q Consensus 313 ~~~v~~l~~~--~~~l~s~s~dg 333 (434)
. .+..++|. ++.|..++.++
T Consensus 277 ~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 277 G-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp S-CCCEEEECTTSCEEEEEETTE
T ss_pred C-ceeEEEEeCCCCEEEEEcCCe
Confidence 5 47778885 56777777654
No 246
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.82 E-value=6.2e-07 Score=84.50 Aligned_cols=221 Identities=11% Similarity=0.019 Sum_probs=142.7
Q ss_pred CCCeEEEEeCCCCceEEEEecCc-------cccEEEEEccCCCCEEEEEEC--CCcEEEEECCCCceEEEEecCCceEEE
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCM 197 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h-------~~~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (434)
.++.|.++|..+. +.+..+.-- ...-..++|+||+++|+.+.. +++|.+.|+.+++.+.++.........
T Consensus 147 ~~~~VsviD~~t~-~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~ 225 (426)
T 3c75_H 147 RTDYVEVFDPVTF-LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIF 225 (426)
T ss_dssp EEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CCCEEEEEECCCC-cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeec
Confidence 3678999999998 777766421 123456889999999999875 578999999999999999876542222
Q ss_pred Ee-CCCEEEEEcCCcEEEEECCCCceEEe-----cCCCCcE-EEEEEeCC--EEEEEeCCCcEEEEEcCCCCCcccccee
Q 013881 198 IS-EGPWIFIGVTNFVKAWNTQTNTDLSL-----SGPVGQV-YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (434)
Q Consensus 198 ~~-~~~~l~~~~~~~i~~w~~~~~~~~~~-----~~~~~~v-~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 268 (434)
.. ...++....++.+.+.+..+++.... .....++ ..+.+.++ .++..+..+.|.+.|.............
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~ 305 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE 305 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence 22 23344556688888888865554321 1111111 12344555 5555567889999998654311000000
Q ss_pred e----------cCccceEEEEEECCCEEEEecC----------CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CC-E
Q 013881 269 L----------KGHSLAVVSLVVGANKLYSGSM----------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ-F 325 (434)
Q Consensus 269 ~----------~~h~~~v~~l~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~-~ 325 (434)
+ .........+..+++++++... ++.|.++|+.+.+.+.++.... ....+.++ ++ +
T Consensus 306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~ 384 (426)
T 3c75_H 306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPL 384 (426)
T ss_dssp SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCE
T ss_pred eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEE
Confidence 0 0011112345556676665532 3579999999999999986533 45677777 66 7
Q ss_pred EEEEe-CCCcEEEEEcCCCCceEEE
Q 013881 326 LLSCS-LDKTIKVWFATDSGNLEVT 349 (434)
Q Consensus 326 l~s~s-~dg~i~vwd~~~~~~~~~~ 349 (434)
+++.. .++.|.++|+.+.+.+..+
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88877 5999999999998777665
No 247
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.82 E-value=1.5e-05 Score=72.84 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=122.1
Q ss_pred cEEEEEccCCC-CEEEEEECCCcEEEEECCCCceEEEEecCCceEEEE--eCCCEEEEEcCCcEEEEECCCCceEEecCC
Q 013881 152 VVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 152 ~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~ 228 (434)
...+.+|+|++ .++++...++.|.+||..+++.. .+.....+.++. .++.++++. ...|.+||..+++...+...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeC
Confidence 34567899975 45566667889999999887643 445555566554 456666554 55699999988876544321
Q ss_pred -----CCcEEEEEEeCC-EEEEEeC-------CCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEE-EEecCC
Q 013881 229 -----VGQVYAMAVGND-LLFAGTQ-------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMD 292 (434)
Q Consensus 229 -----~~~v~~l~~~~~-~l~~g~~-------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~d 292 (434)
...+..+.++++ .++.++. .+.|..++ .+ +. ..+..+......++++ ++.+ ++.+.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g----~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG----KV-TKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT----EE-EEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC----cE-EEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 246889999988 3333332 24455555 22 11 1222222345677775 4455 455667
Q ss_pred CcEEEEeCC--CC-e-----EEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEE
Q 013881 293 NSIRVWNLE--TL-Q-----CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (434)
Q Consensus 293 g~i~vwd~~--~~-~-----~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 362 (434)
+.|.+||+. ++ + .+..+.........+.++ +++.++...++.|.+||. +++.+..+... ...+.+++
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~~~~a 277 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPA 277 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCcEEEE
Confidence 899999986 55 3 223333334556777777 555565556788999998 44444433322 23477777
Q ss_pred ec
Q 013881 363 GM 364 (434)
Q Consensus 363 ~~ 364 (434)
|.
T Consensus 278 f~ 279 (326)
T 2ghs_A 278 FI 279 (326)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=1.7e-06 Score=74.95 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=125.3
Q ss_pred CcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEE-EecCCCcEEEEeCCCCeEEE
Q 013881 230 GQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQCIQ 307 (434)
Q Consensus 230 ~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~dg~i~vwd~~~~~~~~ 307 (434)
.....+.|+.+ ++++.+.+|.|+++|+.+++ .+..+......-..+++.++.|+ +.-.++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgk----v~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQ----PVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSS----CSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCc----EEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34568888888 66777788899999999884 33333111222345677776544 44568999999999999999
Q ss_pred EEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCc---cEEEEEeccCCCCCcEEEEEeCCCeEEE
Q 013881 308 TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH---GVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~i 384 (434)
++..... -..++++++.|+.+..++.|.++|..+.+.+..+....... ....+.+. ++.+.+..-.++.|.+
T Consensus 131 ti~~~~e-GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~----dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYSGE-GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA----NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECSSC-CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE----TTEEEEEETTCSEEEE
T ss_pred EEeCCCc-eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe----CCEEEEEECCCCeEEE
Confidence 9976433 36777888888888889999999999887776665543322 23445544 2234544446889999
Q ss_pred EeCCCCcccccccc--------------cCcEEEEEecCCc--EEEEeC
Q 013881 385 YDLPSFAERGKIFA--------------KQEIRAIQLGPGG--LFFTGD 417 (434)
Q Consensus 385 wd~~~~~~~~~~~~--------------~~~v~~~~~spdg--~l~s~~ 417 (434)
.|..+++.+..+.. .+-.+.|+++|++ +++||-
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999987766542 1357899999987 666663
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=2.8e-06 Score=73.65 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=124.3
Q ss_pred eEEEEecCccc--cEEEEEccCCCCEEEEEECCC--cEEEEECCCCceEEEEecCCce--EEEEeCCCEEEEEc--CCcE
Q 013881 141 KLLTQLEGHQK--VVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TNFV 212 (434)
Q Consensus 141 ~~~~~l~~h~~--~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~i 212 (434)
+.++++. |.. -...|.|+ ++.++.+.+.+| .|+++|+++++.+..+...... ..+...+..|+... ++.+
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 5666774 543 35889998 677777888776 8999999999999999887654 33455556666554 7899
Q ss_pred EEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecC----cc-ceEEEEEECCCEEE
Q 013881 213 KAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG----HS-LAVVSLVVGANKLY 287 (434)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----h~-~~v~~l~~~~~~l~ 287 (434)
.++|.++.+.+........=..+++....|+.+..++.|.++|..+. +....+.- .. ..+..+.+.+..|+
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~----~v~~~I~V~~~g~~~~~lNELe~~~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESL----TPVRTITVTAHGEELPELNELEWVDGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTC----SEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCC----eEEEEEEeccCCccccccceeEEECCEEE
Confidence 99999998877322222232466666666666666888999998876 33333322 11 22344555444444
Q ss_pred E-ecCCCcEEEEeCCCCeEEEEEccc------------cccEEEEEEc--CCEEEEEe
Q 013881 288 S-GSMDNSIRVWNLETLQCIQTLTEH------------TSVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 288 s-~s~dg~i~vwd~~~~~~~~~~~~~------------~~~v~~l~~~--~~~l~s~s 330 (434)
+ .-.+..|.+.|.++++.+..+... ......|+++ .+.|++.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 4 446889999999999999887642 1245789988 34555554
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=4.6e-06 Score=72.27 Aligned_cols=178 Identities=12% Similarity=0.064 Sum_probs=120.8
Q ss_pred CcEEEEEEeCC-EEEEEeCCC--cEEEEEcCCCCCccccceeecCcc-ceEEEEEECCCEEEEec-CCCcEEEEeCCCCe
Q 013881 230 GQVYAMAVGND-LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHS-LAVVSLVVGANKLYSGS-MDNSIRVWNLETLQ 304 (434)
Q Consensus 230 ~~v~~l~~~~~-~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~l~s~s-~dg~i~vwd~~~~~ 304 (434)
.....+.|+.+ ++.+.+.+| .|+++|+.++ +.+..+.-.. ..-..+.+.++.|+... .++.+.+||..+.+
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tg----kv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESG----KTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTC----CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCC----cEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 33477888866 555555655 8999999988 3344333222 22345667777665554 58899999999999
Q ss_pred EEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC---ccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE---HGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
.+.++.... .-..++++++.|+.+..++.|.++|..+.+.+..+...... .....+.+. ++.+.+..-.++.
T Consensus 119 ~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~----~G~lyan~w~~~~ 193 (262)
T 3nol_A 119 QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV----DGEIFANVWQTNK 193 (262)
T ss_dssp EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE----TTEEEEEETTSSE
T ss_pred EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE----CCEEEEEEccCCe
Confidence 999987643 33567778887777777888999999988777666554322 223345553 2334544446889
Q ss_pred EEEEeCCCCcccccccc-------------cCcEEEEEecCCc--EEEEe
Q 013881 382 VRFYDLPSFAERGKIFA-------------KQEIRAIQLGPGG--LFFTG 416 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~-------------~~~v~~~~~spdg--~l~s~ 416 (434)
|.+.|..+++.+..+.. ..-.+.|+|+|++ +++||
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999987766542 1346899999988 55555
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.66 E-value=1.2e-05 Score=68.95 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=124.8
Q ss_pred ceEEEEecCcc--ccEEEEEccCCCCEEEEEECCC--cEEEEECCCCceEEEEecCCce--EEEEeCCCEEEEEc--CCc
Q 013881 140 FKLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TNF 211 (434)
Q Consensus 140 ~~~~~~l~~h~--~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~ 211 (434)
.+.+.++ .|. .-...+.|+. +.+..+.+.+| .|+++|+.+++.+..+...... ..+...+..|+... ++.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence 3667777 364 4577999986 56666777654 8999999999999999877543 33444455555544 789
Q ss_pred EEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecC--cc---ceEEEEEECCCEE
Q 013881 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HS---LAVVSLVVGANKL 286 (434)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~l 286 (434)
+.++|.++.+.+........=..++.....|+.+..++.|.++|..+. +....+.- +. ..+..+.+.+..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~----~~~~~I~V~~~g~~~~~lNeLe~~~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTL----QQVGSIKVTAGGRPLDNLNELEWVNGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCC----eEEEEEEEccCCcccccceeeEEeCCEE
Confidence 999999999887332222333567766666666677899999998876 33333322 21 2345566655545
Q ss_pred EEe-cCCCcEEEEeCCCCeEEEEEccc-------------cccEEEEEEc--CCEEEEEe
Q 013881 287 YSG-SMDNSIRVWNLETLQCIQTLTEH-------------TSVVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 287 ~s~-s~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~l~~~--~~~l~s~s 330 (434)
++. -.+..|.+.|.++++.+..+... ......|+++ .+.|++.+
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 444 46889999999999999887632 1245789988 34444444
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=6.4e-06 Score=71.38 Aligned_cols=175 Identities=10% Similarity=0.112 Sum_probs=120.2
Q ss_pred eEEEEecCcc--ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCce--EEEEeCCCEEEEEc--CCcEEE
Q 013881 141 KLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TNFVKA 214 (434)
Q Consensus 141 ~~~~~l~~h~--~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~i~~ 214 (434)
+.+.++. |. .-...|.|+ ++.+.++.+.+|.|+++|+++++.+..+ ..... ..+...+..|+... ++.+.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 4555553 43 345788887 4677778888899999999999999988 65543 33555555555544 889999
Q ss_pred EECCCCceEEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecC--ccc---eEEEEEECCCEEEEe
Q 013881 215 WNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSL---AVVSLVVGANKLYSG 289 (434)
Q Consensus 215 w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--h~~---~v~~l~~~~~~l~s~ 289 (434)
+|.++.+.+........=..+++....|+.+..++.|.++|..+. +....+.- +.. .+..+.+.+..|++.
T Consensus 121 ~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~----~v~~~I~V~~~g~~v~~lNeLe~~dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGF----ALVGAVQVKLRGQPVELINELECANGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred EECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCC----eEEEEEEeCCCCcccccccccEEeCCEEEEE
Confidence 999999887332223333577777777777777999999998876 33333322 222 335566644445444
Q ss_pred -cCCCcEEEEeCCCCeEEEEEccc-------------cccEEEEEEc
Q 013881 290 -SMDNSIRVWNLETLQCIQTLTEH-------------TSVVMSLLCW 322 (434)
Q Consensus 290 -s~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~l~~~ 322 (434)
-.+..|.+.|.++++.+..+... ......|+++
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d 243 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE 243 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence 46889999999999999887642 1245889998
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.59 E-value=1.9e-05 Score=67.76 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=120.9
Q ss_pred CcEEEEEEeCCE-EEEEeCC--CcEEEEEcCCCCCccccceeecCc-cceEEEEEECCCEEE-EecCCCcEEEEeCCCCe
Q 013881 230 GQVYAMAVGNDL-LFAGTQD--GAILAWKFNVTTNCFEPAASLKGH-SLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQ 304 (434)
Q Consensus 230 ~~v~~l~~~~~~-l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~l~-s~s~dg~i~vwd~~~~~ 304 (434)
.....+.|+++. +.+.+.+ ..|+.+|+.++ +......-. ...-..+++.++.|+ ..-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tg----kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETG----RILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTC----CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCC----CEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence 456689999884 4444554 48999999988 334433321 112244566666554 44568999999999999
Q ss_pred EEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCC---ccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE---HGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
.+.++..... -..++.+++.|+.+..++.|.++|..+.+.+..+...... .....+.+. ++++.+..-.+..
T Consensus 97 ~~~ti~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~----~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV----NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE----TTEEEEEETTTTE
T ss_pred EEEEEeCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe----CCEEEEEECCCCe
Confidence 9999976443 3577778877777778999999999988776666554322 123344443 2334444446789
Q ss_pred EEEEeCCCCcccccccc--------------cCcEEEEEecCCc--EEEEeC
Q 013881 382 VRFYDLPSFAERGKIFA--------------KQEIRAIQLGPGG--LFFTGD 417 (434)
Q Consensus 382 i~iwd~~~~~~~~~~~~--------------~~~v~~~~~spdg--~l~s~~ 417 (434)
|.+.|..+++.+..+.. .+-.+.|+++|++ +++||=
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999987766541 1346899999987 556653
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.59 E-value=7.7e-05 Score=65.80 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=133.7
Q ss_pred CeEEEEeCCCCceE----EEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCCCceEEEEecCCceEEEEeCCCE
Q 013881 129 KFLHSWTVGDGFKL----LTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203 (434)
Q Consensus 129 ~~i~vwd~~~~~~~----~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (434)
+.|+.+++...... ...+......+..++|++++..|+.+. .++.|.++++........
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~---------------- 73 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI---------------- 73 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE----------------
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE----------------
Confidence 46888887754110 112222234678999999766665554 467888888865542211
Q ss_pred EEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEE
Q 013881 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (434)
Q Consensus 204 l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 280 (434)
..........++++++ ++++-...+.|.++++..... .............++
T Consensus 74 ---------------------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~i~ 128 (267)
T 1npe_A 74 ---------------------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFDTGLVNPRGIV 128 (267)
T ss_dssp ---------------------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEE
T ss_pred ---------------------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----EEEEECCCCCccEEE
Confidence 1112235677888764 444445567899998865321 111111123456777
Q ss_pred EC--CCEEEEecC---CCcEEEEeCCCCeEEEEEc-cccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceEEEee
Q 013881 281 VG--ANKLYSGSM---DNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 281 ~~--~~~l~s~s~---dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~ 351 (434)
++ +..|+.+.. .+.|..+++.... ...+. ..-.....++++ ++.|..+ ...+.|.++|+..... ..+..
T Consensus 129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~ 206 (267)
T 1npe_A 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE 206 (267)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE
T ss_pred EeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEec
Confidence 75 456555543 4688888876432 23332 223446778886 4555444 4568899999864322 22222
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccC--cEEEEEecCCc
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQ--EIRAIQLGPGG 411 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~spdg 411 (434)
. ......++. + ++.++++....+.|..+|..+++.+..+.... ....+++.|++
T Consensus 207 ~--~~~P~gi~~--d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 207 G--LQYPFAVTS--Y--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp C--CCSEEEEEE--E--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred C--CCCceEEEE--e--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 1 112334442 2 23355555567899999999988877765432 46677777775
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.57 E-value=8.5e-05 Score=65.52 Aligned_cols=195 Identities=10% Similarity=0.009 Sum_probs=116.4
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCC
Q 013881 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETL 303 (434)
Q Consensus 230 ~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~ 303 (434)
..+..++++++ ++++-..++.|..+++.... ..............++++ ++.|+ +-...+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 45678999874 44455567899999987642 122222222345677775 34544 5556789999998753
Q ss_pred eEEEEEccccccEEEEEEc--CCEEEEEeC---CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSL---DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
.....+.........++++ +..|..+.. .+.|..+++.... ...+.. ........+++.++. +.++++-..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~-~~~~~P~gia~d~~~--~~lyv~d~~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFS--SQLCWVDAG 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTT--TEEEEEETT
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE-CCCCCCcEEEEcCCC--CEEEEEECC
Confidence 3222222222455778887 456655554 3688888875432 222221 122345667776543 335556666
Q ss_pred CCeEEEEeCCCCcccccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCccc
Q 013881 379 DNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPVA 433 (434)
Q Consensus 379 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~~ 433 (434)
.+.|.++|+........+........++.. ++ ++++....+.|.++|..+++++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 789999999864433332233344667765 44 6666667789999999888753
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=7.4e-05 Score=73.81 Aligned_cols=228 Identities=12% Similarity=0.030 Sum_probs=137.0
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccc-cEEEEEccC---CCCEEEEEE------CCCcEEEEECCCCceEEEEecC
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-VVSGITLPS---GSDKLYSGS------KDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~-~V~~l~~s~---~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
+++++.|+.|+.+|..+| +.+........ .-..+.-+| ++ .++.++ .++.|+-+|.++|+.+-.+...
T Consensus 124 V~v~t~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG-ETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCC-CEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 888999999999999999 66655442210 000111112 34 455554 3899999999999999888765
Q ss_pred Cce-----------------------------------------EEEEeCCCEEEEEcC-----------------CcEE
Q 013881 192 GEV-----------------------------------------GCMISEGPWIFIGVT-----------------NFVK 213 (434)
Q Consensus 192 ~~~-----------------------------------------~~~~~~~~~l~~~~~-----------------~~i~ 213 (434)
... ..+.....+++.+.. +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 322 122235556666542 3799
Q ss_pred EEECCCCceE-Ee--cCCC--------CcEEEEEE---eC---CEEEEEeCCCcEEEEEcCCCCCcccccee--------
Q 013881 214 AWNTQTNTDL-SL--SGPV--------GQVYAMAV---GN---DLLFAGTQDGAILAWKFNVTTNCFEPAAS-------- 268 (434)
Q Consensus 214 ~w~~~~~~~~-~~--~~~~--------~~v~~l~~---~~---~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------- 268 (434)
.+|.++++.+ .. ..|. ..+. +.. .. ..++.++.+|.++++|..+++..+.....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999876 22 2221 1222 222 22 25777899999999999887432111000
Q ss_pred ec-CccceE--------------------------EEEEEC--CCEEEE-------------------------------
Q 013881 269 LK-GHSLAV--------------------------VSLVVG--ANKLYS------------------------------- 288 (434)
Q Consensus 269 ~~-~h~~~v--------------------------~~l~~~--~~~l~s------------------------------- 288 (434)
.. ....++ ..++++ ..++++
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 00 000000 011111 111111
Q ss_pred --ec------CCCcEEEEeCCCCeEEEEEccccccE-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeee
Q 013881 289 --GS------MDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 289 --~s------~dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 352 (434)
.+ .+|.|..||+.+++.+.+........ ..+...+.+++.++.|+.|+.||.++++.+..+...
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 12 45899999999999887775321111 124456888889999999999999999887766543
No 257
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.49 E-value=0.00032 Score=62.28 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=147.1
Q ss_pred cEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcE
Q 013881 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAI 251 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i 251 (434)
.|.|-|+.....+..........-+.+....++.-....+.++|+++...+........|.--.|-.+ .|+..+ +..|
T Consensus 50 ~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~taV 128 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAV 128 (365)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE-SSEE
T ss_pred EEEEEECCCCCCccccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc-CCcE
Confidence 57777777766655555555555555666666666677888888888777644444556666677555 444433 3468
Q ss_pred EEEEcCCCCCccccceeecCc----cceEEEEEECC--CEEE-Eec------CCCcEEEEeCCCCeEEEEEccccccEEE
Q 013881 252 LAWKFNVTTNCFEPAASLKGH----SLAVVSLVVGA--NKLY-SGS------MDNSIRVWNLETLQCIQTLTEHTSVVMS 318 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h----~~~v~~l~~~~--~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 318 (434)
+.|++.... .+...+.-| ...|.....+. ++++ +|- -.|.+.+|..+. +.-+.+++|.+.-..
T Consensus 129 yHWs~~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 129 YHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEESSTTC---CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEE
T ss_pred EEEcccCCC---CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEE
Confidence 889887533 344444333 24455555553 3332 221 237788999765 445677788766655
Q ss_pred EEEcCC-----EEEEEeC---CCcEEEEEcCCC--Cc------eEEEeeecC--CccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 319 LLCWDQ-----FLLSCSL---DKTIKVWFATDS--GN------LEVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 319 l~~~~~-----~l~s~s~---dg~i~vwd~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
+...++ .++.+.. .+++.|-++... +. ...+....+ ..--.++..+.... ++..-+.-|
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg---viyviTK~G 281 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKYG 281 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT---EEEEEETTS
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC---EEEEEeCCc
Confidence 555532 2333322 258899988543 11 111111111 12233444443332 788888999
Q ss_pred eEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 381 SVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.|++||++++..+..-.- .+.|-.-+...+. -++.....|.|.--.+.+..+
T Consensus 282 ~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 282 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 999999999998876543 4455444443333 444445778777777666554
No 258
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.38 E-value=9.1e-05 Score=69.30 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=111.0
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeec------C-ccceEEEEEE--CCCEEEEecCC------CcEEEEeCCCCeE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLK------G-HSLAVVSLVV--GANKLYSGSMD------NSIRVWNLETLQC 305 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~------~-h~~~v~~l~~--~~~~l~s~s~d------g~i~vwd~~~~~~ 305 (434)
+++.+..++.|.++|+.+.....+....+. . ....-..+.. ++ .++++..+ +.|.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 677788889999999975433223333331 0 1112233333 34 55555444 7899999999999
Q ss_pred EEEEcccccc---EEEEEEc--CCEEEEEe-------------------CCCcEEEEEcCCCCceEEEeeecCCccEEEE
Q 013881 306 IQTLTEHTSV---VMSLLCW--DQFLLSCS-------------------LDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361 (434)
Q Consensus 306 ~~~~~~~~~~---v~~l~~~--~~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 361 (434)
+.++.....+ -..+.++ ++.+++.. .+.+|.+||+.+.+.+..+...........+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 9998743222 2335454 66777764 3789999999886544444432222334455
Q ss_pred EeccCCCCCcEEEEEe------CCCeEEEEeCCCC-------------ccccccc-------c-cCcEEEEEecCCc--E
Q 013881 362 CGMPDSEGKPVLLCSC------NDNSVRFYDLPSF-------------AERGKIF-------A-KQEIRAIQLGPGG--L 412 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~-------------~~~~~~~-------~-~~~v~~~~~spdg--~ 412 (434)
.+..++++. ++++++ .+++|.+|....+ +....+. . ......|.+|+|| +
T Consensus 257 ~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 257 RPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred EeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 553333333 555444 5668876554332 1111110 0 2457889999999 4
Q ss_pred EEEeCCCCCEEEEEcc
Q 013881 413 FFTGDGTGQVRVWQWC 428 (434)
Q Consensus 413 l~s~~~dg~i~iwd~~ 428 (434)
+++.-..+.|.+||+.
T Consensus 336 YVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 336 YLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEEETTTTEEEEEECS
T ss_pred EEEeCCCCEEEEEEec
Confidence 4555568899999986
No 259
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.35 E-value=0.0012 Score=60.97 Aligned_cols=252 Identities=12% Similarity=0.095 Sum_probs=147.0
Q ss_pred cEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEE-eCCEEEEEeCCCcE
Q 013881 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GNDLLFAGTQDGAI 251 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~g~~dg~i 251 (434)
.|.|-|+..+..+..........-+.+....++.-....+.++|+++...+........|.--.| +++.|+..+ +..|
T Consensus 49 ~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taV 127 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAV 127 (494)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEE
T ss_pred eEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCee
Confidence 56777777766555555555555555666666666677888888888776643333344555555 444554444 3568
Q ss_pred EEEEcCCCCCccccceeecCc----cceEEEEEECC--CEEE-Eec------CCCcEEEEeCCCCeEEEEEccccccEEE
Q 013881 252 LAWKFNVTTNCFEPAASLKGH----SLAVVSLVVGA--NKLY-SGS------MDNSIRVWNLETLQCIQTLTEHTSVVMS 318 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h----~~~v~~l~~~~--~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 318 (434)
+.|++.... .+...+.-| ...|.....+. ++++ +|= -.|.+.+|..+. +.-+.+.+|.+.-..
T Consensus 128 yHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 128 YHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ 203 (494)
T ss_dssp EEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEE
T ss_pred EEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEE
Confidence 889886533 344444333 23455555553 3433 221 247788999765 445677888777666
Q ss_pred EEEcCC-----EEEEEeC---CCcEEEEEcCCC--Cc------eEEEeeecC--CccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 319 LLCWDQ-----FLLSCSL---DKTIKVWFATDS--GN------LEVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 319 l~~~~~-----~l~s~s~---dg~i~vwd~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
+...++ .++.+.. .+++.|-++... +. ...+..... ..--.++..++... ++..-+.-|
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg---viyviTK~G 280 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKYG 280 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT---EEEEEETTS
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC---EEEEEecCc
Confidence 666532 3444433 278999988543 10 111111111 12233444443333 788888999
Q ss_pred eEEEEeCCCCcccccccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccCCcc
Q 013881 381 SVRFYDLPSFAERGKIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.|++||+.++..+..-.- .+.|-.-+..... -++.....|.|.--.+.+..+
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred eEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 999999999998876543 4445444444433 444445778777766666544
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.26 E-value=0.0012 Score=59.46 Aligned_cols=226 Identities=10% Similarity=0.030 Sum_probs=120.8
Q ss_pred eEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCC
Q 013881 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (434)
Q Consensus 141 ~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~ 220 (434)
+.+..+... .....++|+++++++++-..++.|..||.... ....+.
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~------------------------------- 69 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT------------------------------- 69 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-------------------------------
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-------------------------------
Confidence 556666543 56778999999987777667888998887653 222211
Q ss_pred ceEEecCCCCcEEEEEEeCC-EEEEEe--CCC-cEEEEEcCCCCCccccceeecCccceEEEEE-ECCCEEE-EecCCCc
Q 013881 221 TDLSLSGPVGQVYAMAVGND-LLFAGT--QDG-AILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLY-SGSMDNS 294 (434)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~-~l~~g~--~dg-~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~-s~s~dg~ 294 (434)
.......+++.++ .|+++. .++ .|..++..++.. ..+..+.. ......+. +.+..++ +-..++.
T Consensus 70 -------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~--~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~ 139 (306)
T 2p4o_A 70 -------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV--ETLLTLPD-AIFLNGITPLSDTQYLTADSYRGA 139 (306)
T ss_dssp -------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE--EEEEECTT-CSCEEEEEESSSSEEEEEETTTTE
T ss_pred -------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE--EEEEeCCC-ccccCcccccCCCcEEEEECCCCe
Confidence 1234667777766 333333 222 355566554421 11111111 11122222 3344444 4446889
Q ss_pred EEEEeCCCCeE-EEEEc---------cccccEEEEEEcCCEEEE-EeCCCcEEEEEcCCCCc---eEEEeeecCCccEEE
Q 013881 295 IRVWNLETLQC-IQTLT---------EHTSVVMSLLCWDQFLLS-CSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLA 360 (434)
Q Consensus 295 i~vwd~~~~~~-~~~~~---------~~~~~v~~l~~~~~~l~s-~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~ 360 (434)
|+++|..+++. +.... ..-.....+..+++.|+. -...+.|..|++..... ...+.... ....
T Consensus 140 i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~---~P~g 216 (306)
T 2p4o_A 140 IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT---NIDD 216 (306)
T ss_dssp EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC---CCSS
T ss_pred EEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC---CCCC
Confidence 99999876532 21111 111233455566665544 45578999999875221 11221111 1223
Q ss_pred EEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc--cccccc-cCcEEEEEec---CCc-EEEEe
Q 013881 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE--RGKIFA-KQEIRAIQLG---PGG-LFFTG 416 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~v~~~~~s---pdg-~l~s~ 416 (434)
+++.++ ++++++....+.|.+++.. ++. +..+.. ....++++|. |++ .|+..
T Consensus 217 i~vd~d---G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 217 FAFDVE---GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp EEEBTT---CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred eEECCC---CCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 444433 3366665567899999975 444 222332 3568999998 886 44433
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.25 E-value=0.00064 Score=63.61 Aligned_cols=205 Identities=9% Similarity=0.045 Sum_probs=124.7
Q ss_pred EEecCCCeEEEEeCCCC---ceEEEEec------C-ccccEEEEEccCCCCEEEEEECC------CcEEEEECCCCceEE
Q 013881 123 MYGEKCKFLHSWTVGDG---FKLLTQLE------G-HQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAG 186 (434)
Q Consensus 123 ~~g~~d~~i~vwd~~~~---~~~~~~l~------~-h~~~V~~l~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~ 186 (434)
+.+..++.|+++|+.+. .+++++++ . -...-..+..+|++ +++++..+ +.|.+.|.++.+.+.
T Consensus 100 v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 100 VPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp EEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred EccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 33557889999998642 35666663 0 11234567788999 77776665 789999999999999
Q ss_pred EEecCCce------EEEEeCCCEEEEEc--------------------CCcEEEEECCCCceE-EecC--CCCcEEEEEE
Q 013881 187 VINLGGEV------GCMISEGPWIFIGV--------------------TNFVKAWNTQTNTDL-SLSG--PVGQVYAMAV 237 (434)
Q Consensus 187 ~~~~~~~~------~~~~~~~~~l~~~~--------------------~~~i~~w~~~~~~~~-~~~~--~~~~v~~l~~ 237 (434)
++...... ..+.++.+.++++. .+.|.+||+.+++.. ++.- .......+.|
T Consensus 179 ~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f 258 (462)
T 2ece_A 179 KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRP 258 (462)
T ss_dssp ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE
T ss_pred EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEe
Confidence 98755221 22345677777764 679999999987655 2222 2234455655
Q ss_pred --eCC--EEEEEe------CCCcEEEEEcCCCCCccccceee--cCc----------------cceEEEEEE--CCCEEE
Q 013881 238 --GND--LLFAGT------QDGAILAWKFNVTTNCFEPAASL--KGH----------------SLAVVSLVV--GANKLY 287 (434)
Q Consensus 238 --~~~--~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~--~~h----------------~~~v~~l~~--~~~~l~ 287 (434)
+|+ ++++++ .+++|.+|..+.+. ++....+ ... ......|.+ ++++|+
T Consensus 259 ~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY 336 (462)
T 2ece_A 259 LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY 336 (462)
T ss_dssp CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred eECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence 777 444444 56788887765421 1111111 000 122344445 566766
Q ss_pred Eec-CCCcEEEEeCCC---CeEEEEEccccc--------------cEEEEEEc--CCEEEEEe
Q 013881 288 SGS-MDNSIRVWNLET---LQCIQTLTEHTS--------------VVMSLLCW--DQFLLSCS 330 (434)
Q Consensus 288 s~s-~dg~i~vwd~~~---~~~~~~~~~~~~--------------~v~~l~~~--~~~l~s~s 330 (434)
++. ..+.|.+||+.. .+.+..+..... .-..+.++ +++|+++.
T Consensus 337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 554 578999999853 455555543210 12344444 77887776
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.003 Score=57.13 Aligned_cols=225 Identities=12% Similarity=0.041 Sum_probs=128.6
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
+|+.+....|+..++.+.....+.........++|++. ++++-..++.|..+++............+.........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence 45555556677777776655544445567789999864 455555678999999875200001111122121233455
Q ss_pred EEC--CCE-EEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeCC--CcEEEEEcCCCCceEEEeee
Q 013881 280 VVG--ANK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD--KTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 280 ~~~--~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~ 352 (434)
+++ ++. .++-...+.|.++|+........+.........++++ +..|+.+... +.|...++... ....+..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~- 160 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT- 160 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEEC-
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEE-
Confidence 553 444 4555678899999987544333333333456778876 4555555443 67888887533 2222222
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
..-.....+++.+.. +++.++-...+.|..+|+.... ...+. .......|++..+.++++-...+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~--~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLS--GRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccC--CEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 122345667776543 3355555567899999987432 22221 1234567787543367777788899999987
Q ss_pred CCcc
Q 013881 429 NGPV 432 (434)
Q Consensus 429 ~g~~ 432 (434)
+|+.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 7654
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0018 Score=60.34 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=122.4
Q ss_pred EcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEEC-
Q 013881 207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG- 282 (434)
Q Consensus 207 ~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~- 282 (434)
+....|+.+++.......+......+..++|++. ++++-...+.|..+++.... ....+.........++++
T Consensus 93 ~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p~glavd~ 168 (386)
T 3v65_B 93 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESPGGLAVDW 168 (386)
T ss_dssp ECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----EEEEECSSCSCCCCEEEET
T ss_pred ecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----cEEEEeCCCCCccEEEEEe
Confidence 3334444444444333333334456788999864 45555667889999887642 111111111222344443
Q ss_pred -CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe-CC-CcEEEEEcCCCCceEEEeeecCCc
Q 013881 283 -AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LD-KTIKVWFATDSGNLEVTYTHNEEH 356 (434)
Q Consensus 283 -~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~d-g~i~vwd~~~~~~~~~~~~~~~~~ 356 (434)
++ ++++-...+.|.+.++........+...-.....++++ +..|+... .. +.|..+++...... .+.. ....
T Consensus 169 ~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~-~~~~ 246 (386)
T 3v65_B 169 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIAD-THLF 246 (386)
T ss_dssp TTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC-SSCS
T ss_pred CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEE-CCCC
Confidence 44 44555667889999887544333333333456777777 45554444 34 67888887544332 2221 2223
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
....+++.+... .+.++-+..+.|..+++........+. .......|++..+.++++-...+.|..++..+|+.
T Consensus 247 ~PnGlavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 247 WPNGLTIDYAGR--RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp CEEEEEEEGGGT--EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CeeeEEEeCCCC--EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcc
Confidence 456777765433 355555567889999987533222221 23456778884333777777888898888666653
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.15 E-value=0.00048 Score=66.75 Aligned_cols=179 Identities=12% Similarity=0.060 Sum_probs=114.0
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccce--eecCccceEEEEEE----CCCEEEEec------------------CCCcEE
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAA--SLKGHSLAVVSLVV----GANKLYSGS------------------MDNSIR 296 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~h~~~v~~l~~----~~~~l~s~s------------------~dg~i~ 296 (434)
+++....+..|.+.|+.+. +... .+.. ......+.+ +++++++++ .++.+.
T Consensus 104 lfVnd~~~~rVavIdl~t~----~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVM----KCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEETTTTEEEEEETTTT----EEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCc----eEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4444555677999999987 4333 3321 123455554 567877774 356899
Q ss_pred EEeCCCCeEEEEEccccc-cEEEEEEcCCEEEEEeCCC--------------------------------------cEEE
Q 013881 297 VWNLETLQCIQTLTEHTS-VVMSLLCWDQFLLSCSLDK--------------------------------------TIKV 337 (434)
Q Consensus 297 vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~l~s~s~dg--------------------------------------~i~v 337 (434)
+.|..+.+.+.++..... .-..+..+++++++.+.+. .|.|
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 999999998888764221 1223333467777666543 4666
Q ss_pred EEcCC--CCc-eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc------------ccccccccCcE
Q 013881 338 WFATD--SGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA------------ERGKIFAKQEI 402 (434)
Q Consensus 338 wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~v 402 (434)
.|..+ ... +..+..... ...+.++|++ +.+++++..+.+|.++|+.+.+ ....+......
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDG--k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANN---PHGCNMAPDK--KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp EECSGGGCCSSEEEEEEESS---CCCEEECTTS--SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred EeCcccCCceeEEEEecCCC---ceEEEEcCCC--CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 67665 333 222322221 2345555543 3455555578999999999753 23344446678
Q ss_pred EEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 403 RAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 403 ~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..++|+|+| .+++.--|++|.+||+.+
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 999999999 778888999999999976
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.13 E-value=0.0016 Score=59.07 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=128.8
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce-EEecCCC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPV 229 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~-~~~~~~~ 229 (434)
....++++++++++++++..++.|..||..+++.. .+......... ...+ +.. .......
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~--------~~~~----------g~~~~~~~~~~ 79 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNK--------AFCE----------NSTDAEKRPLC 79 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCH--------HHHT----------TCCCGGGHHHH
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccc--------cccc----------cccchhccccC
Confidence 34567889999998888888999999988765432 11100000000 0000 000 0000011
Q ss_pred CcEEEEEEeC-C-EEEEEeCCCcEEEEEcCCCCCcccccee-ecCc-cceEEEEEECC-C-EEEEec-------------
Q 013881 230 GQVYAMAVGN-D-LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKGH-SLAVVSLVVGA-N-KLYSGS------------- 290 (434)
Q Consensus 230 ~~v~~l~~~~-~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h-~~~v~~l~~~~-~-~l~s~s------------- 290 (434)
..+..+++.+ + .|+++...+.|..+|...+.. +.+.. ..+. ......+.+++ + .|+.+.
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 2466777775 4 666665555577776554311 11111 1111 12345566654 2 333322
Q ss_pred -----CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCC--ceEEEeeecCCccEEE
Q 013881 291 -----MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSG--NLEVTYTHNEEHGVLA 360 (434)
Q Consensus 291 -----~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~ 360 (434)
.++.|..||..+++....... -.....++++ ++.|+.+ +..+.|.+|++.... ....+... .. ...
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~g 233 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGN 233 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCC
Confidence 236788899877664332221 2233457777 4555555 556899999987532 22222221 11 444
Q ss_pred EEeccCCCCCcEEEEEeC----------CCeEEEEeCCCCcccccccc-----cCcEEEEEecCCc-EEEEeCCCCCEEE
Q 013881 361 LCGMPDSEGKPVLLCSCN----------DNSVRFYDLPSFAERGKIFA-----KQEIRAIQLGPGG-LFFTGDGTGQVRV 424 (434)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~spdg-~l~s~~~dg~i~i 424 (434)
++..++ + .+.++... .+.|..+|.. ++.+..+.. ...++.+++ .++ ++++....+.|.+
T Consensus 234 i~~d~~--G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 234 IKRNAD--G-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp EEECTT--S-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred eEECCC--C-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence 555433 3 24444433 4678888864 555544432 134666666 366 6666677889999
Q ss_pred EEccCC
Q 013881 425 WQWCNG 430 (434)
Q Consensus 425 wd~~~g 430 (434)
+++...
T Consensus 309 ~~~~~~ 314 (322)
T 2fp8_A 309 LVYDKK 314 (322)
T ss_dssp EEC---
T ss_pred Eecccc
Confidence 998643
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.12 E-value=0.006 Score=57.11 Aligned_cols=226 Identities=10% Similarity=0.014 Sum_probs=129.6
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
+|+......|+..++.......+......+..++|++. ++++-...+.|+.+++......................+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 164 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 164 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE
T ss_pred eeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE
Confidence 44444455566666655544444455667889999864 444555678888888865210001122222223345566
Q ss_pred EEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCceEEEeee
Q 013881 280 VVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 280 ~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~ 352 (434)
+++ ++ +.++-...+.|.+.++........+...-.....|+++ +.+|+.... .+.|...++..........
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-- 242 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-- 242 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--
Confidence 664 34 45555667899999987655444444344456788887 455555542 3678888876443322222
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc---ccCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF---AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
..-.....+++.+... ++.++-...+.|..+|+.......... .......|++..+.++++-...+.|..++..+
T Consensus 243 ~~l~~P~glavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp SSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred CCCCceEEEEEEeCCC--EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 1223456677765433 344554567899999987543322221 12345677775444677777888999999777
Q ss_pred Ccc
Q 013881 430 GPV 432 (434)
Q Consensus 430 g~~ 432 (434)
|+.
T Consensus 321 G~~ 323 (400)
T 3p5b_L 321 GSD 323 (400)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.10 E-value=0.00037 Score=70.12 Aligned_cols=194 Identities=9% Similarity=0.073 Sum_probs=100.8
Q ss_pred EEEEeCC--EEEEEe-CCCcEEEEEcCCCCCccccceeecCccceEEEEEE-CCCEEEEec-CC-----CcEEEEeCCCC
Q 013881 234 AMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGS-MD-----NSIRVWNLETL 303 (434)
Q Consensus 234 ~l~~~~~--~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~d-----g~i~vwd~~~~ 303 (434)
++++..+ +++.|+ .+..+.+||..+.. +..+..+......-..... +++.++.|+ .+ ..+.+||..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCc--eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 3444333 666666 45679999987652 2223233222222334445 677888887 44 57999999887
Q ss_pred eEEEEE----cc-ccccEEEE-EEcCCEEEEEeCC---------CcEEEEEcCCCCceEEEeeecC-------CccEEEE
Q 013881 304 QCIQTL----TE-HTSVVMSL-LCWDQFLLSCSLD---------KTIKVWFATDSGNLEVTYTHNE-------EHGVLAL 361 (434)
Q Consensus 304 ~~~~~~----~~-~~~~v~~l-~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~ 361 (434)
+-...- .. ....-.++ ...+..++.++.+ ..+..||..+............ .....++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 643320 00 00000000 0113344444443 4567888876653332221111 0112233
Q ss_pred EeccCCCCCcEEEEEeCCC-----------eEEEEeCCCCcccc----cccccCcEEEEEecCCc-EEEEeCCC------
Q 013881 362 CGMPDSEGKPVLLCSCNDN-----------SVRFYDLPSFAERG----KIFAKQEIRAIQLGPGG-LFFTGDGT------ 419 (434)
Q Consensus 362 ~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~----~~~~~~~v~~~~~spdg-~l~s~~~d------ 419 (434)
.+. ..+++++++|+.++ .|.+||..+.+-.. .+.....-.+++..|++ +++.|+.+
T Consensus 405 ~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYD--AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEE--TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred ecc--CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 221 12345888887543 68888887654222 22222222345667888 88888754
Q ss_pred -----CCEEEEEccCCc
Q 013881 420 -----GQVRVWQWCNGP 431 (434)
Q Consensus 420 -----g~i~iwd~~~g~ 431 (434)
..+.+||..+++
T Consensus 483 ~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCSBCCCCEEEEGGGTE
T ss_pred CCCcccceEEEcCCCCc
Confidence 568999987754
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.05 E-value=0.0018 Score=58.58 Aligned_cols=221 Identities=9% Similarity=0.026 Sum_probs=123.4
Q ss_pred EEEeC-Cc-EEEecCCCeEEEEeCCCCceEEEEec--C------------------ccccEEEEEccCCCCEEEEEECCC
Q 013881 115 RNWVQ-GN-CMYGEKCKFLHSWTVGDGFKLLTQLE--G------------------HQKVVSGITLPSGSDKLYSGSKDE 172 (434)
Q Consensus 115 ~~~~~-~~-~~~g~~d~~i~vwd~~~~~~~~~~l~--~------------------h~~~V~~l~~s~~~~~l~s~s~dg 172 (434)
++|.+ +. ++++..++.|..|+..++ +.. .+. . ....+..|++.++...|+.+...+
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~ 101 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNS-GFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYY 101 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTT-CEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCC-ceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCC
Confidence 45533 34 666778899999998765 222 121 0 123578999998333455555555
Q ss_pred cEEEEECCCCceEEEEe--cC---CceEEEE--e-CCCEEEEEcC------------------CcEEEEECCCCceEEec
Q 013881 173 TVRVWDCASGQCAGVIN--LG---GEVGCMI--S-EGPWIFIGVT------------------NFVKAWNTQTNTDLSLS 226 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~--~~---~~~~~~~--~-~~~~l~~~~~------------------~~i~~w~~~~~~~~~~~ 226 (434)
.|..+|..+++...... .. .....+. . ++.+.++... +.|..++..+++...+.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 58889877654322111 11 1122232 3 4555554322 56888888776644332
Q ss_pred CCCCcEEEEEEeCC--EEEEE-eCCCcEEEEEcCCCCC-ccccceeecCccceEEEEEEC--CCEEEEecC---------
Q 013881 227 GPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVTTN-CFEPAASLKGHSLAVVSLVVG--ANKLYSGSM--------- 291 (434)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~g-~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--------- 291 (434)
........++++++ .|+++ +..+.|.+|++..... ..+....+. . ...++++ +++.++...
T Consensus 182 ~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEEEEecCcccccccCC
Confidence 22233456889887 45544 5678999999875321 011111121 2 4556665 454444433
Q ss_pred -CCcEEEEeCCCCeEEEEEcccc----ccEEEEEEcCCEEEEE-eCCCcEEEEEcCC
Q 013881 292 -DNSIRVWNLETLQCIQTLTEHT----SVVMSLLCWDQFLLSC-SLDKTIKVWFATD 342 (434)
Q Consensus 292 -dg~i~vwd~~~~~~~~~~~~~~----~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~ 342 (434)
.+.|..+|. .++.+..+.... ..+..+.+.+..|+.+ ...+.|.++++..
T Consensus 258 ~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 258 VDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred CccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 467888987 477777765432 3455666665555544 4577888887753
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.05 E-value=0.0074 Score=55.35 Aligned_cols=223 Identities=12% Similarity=0.031 Sum_probs=128.2
Q ss_pred CEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 202 ~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
.+|+.+....|+..++.......+......+..++|++. ++++-...+.|..+++.... ..............
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p~g 120 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESPGG 120 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCCCE
T ss_pred ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC----ceEEEeCCCCCccE
Confidence 344555555666666666554444444556889999864 44555567889999887652 11112211222344
Q ss_pred EEEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe-CC-CcEEEEEcCCCCceEEEee
Q 013881 279 LVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LD-KTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 279 l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~d-g~i~vwd~~~~~~~~~~~~ 351 (434)
++++ ++ ++++-...+.|.+.++........+...-.....++++ +..|+... .. +.|..+++...... .+.
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~- 198 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA- 198 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESC-
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEE-
Confidence 5553 44 45565667899999987544333333333456777777 44444443 44 77888887543222 221
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccCC
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g 430 (434)
.........+++.+.. +.+.++-...+.|..+++........+. .......|++..+.++++-...+.|..++-.+|
T Consensus 199 ~~~~~~PnGla~d~~~--~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAG--RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp CSSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCcceEEEeCCC--CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence 1222345677776543 3355555567889999987533222121 234567788843336677777888888886565
Q ss_pred cc
Q 013881 431 PV 432 (434)
Q Consensus 431 ~~ 432 (434)
+.
T Consensus 277 ~~ 278 (349)
T 3v64_C 277 KN 278 (349)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.01 E-value=0.0064 Score=54.97 Aligned_cols=223 Identities=13% Similarity=0.031 Sum_probs=127.1
Q ss_pred EEEEEcCCcEEEEECCCCc--eEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEE
Q 013881 203 WIFIGVTNFVKAWNTQTNT--DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
+|+.+....|+.+++.... ...+........++.|++. ++.+-...+.|..+++..... ....+........
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---~~~~~~~~l~~p~ 82 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVVSGLLSPD 82 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---CCEEEEECCSCCC
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---eEEEEcCCCCCcc
Confidence 4445555566666666543 1122222345668888864 555556678899998876521 1111111112233
Q ss_pred EEEEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCceEEEe
Q 013881 278 SLVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 278 ~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~~~~~ 350 (434)
.++++ +. .+++-...+.|.++++........+.........++++ +..|+.+.. .+.|...++..... ..+.
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~ 161 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII 161 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE
Confidence 45553 44 45555667899999987543333333334456777776 455555552 57788888754322 2222
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
. ..-.....+++.++. +.+.++=+..+.|..+|+.......... .......+++..++.+.+-...+.|..++..+
T Consensus 162 ~-~~l~~Pnglavd~~~--~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 162 N-SEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp C-SSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred E-CCCCCccEEEEeccC--CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 1 122345667776543 3355555567899999987432221112 23456677776555667777888999999877
Q ss_pred Ccc
Q 013881 430 GPV 432 (434)
Q Consensus 430 g~~ 432 (434)
|+.
T Consensus 239 G~~ 241 (318)
T 3sov_A 239 GEG 241 (318)
T ss_dssp CCS
T ss_pred CCc
Confidence 764
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.01 E-value=0.00045 Score=69.48 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=35.7
Q ss_pred eEEEEeCCCC-ceEEEEec-CccccEEEEEccCCCCEEEEEEC-CCcEEEEECCCCc
Q 013881 130 FLHSWTVGDG-FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQ 183 (434)
Q Consensus 130 ~i~vwd~~~~-~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~ 183 (434)
.+.+||..++ ...+..+. .+.....++++..++++++.|+. +..+.+||..+.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 6888998865 22233332 23333445677889999999984 4578888887664
No 272
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.00 E-value=0.0073 Score=53.69 Aligned_cols=252 Identities=8% Similarity=0.074 Sum_probs=165.7
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe-CCCEEEE
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFI 206 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 206 (434)
+..|.|-|+..+.+..+.-..-+.+| .+|..+.||-=. ..++.|+|+++.+.++.+...+.+...-+ +...|+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAI----MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEE----ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEE
T ss_pred CCEEEEEECCCCCCccccccccceee----eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEE
Confidence 34788889887655555444334443 488888777665 67899999999999999999988887765 7788888
Q ss_pred EcCCcEEEEECCCCce--EEecCC----CCcEEEEEEeCC---EEEEEe------CCCcEEEEEcCCCCCccccceeecC
Q 013881 207 GVTNFVKAWNTQTNTD--LSLSGP----VGQVYAMAVGND---LLFAGT------QDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 207 ~~~~~i~~w~~~~~~~--~~~~~~----~~~v~~l~~~~~---~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
-.+..|+-|+++.... ..+..| ..+|.....+++ .+++|- -.|.+.+|..+. +..+.+++
T Consensus 123 VT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-----~~sQ~ieG 197 (365)
T 2xzh_A 123 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-----KVSQPIEG 197 (365)
T ss_dssp EESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-----TEEEEECC
T ss_pred EcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-----cccceeee
Confidence 9999999999975332 233333 467777777777 444443 237788998876 45677888
Q ss_pred ccceEEEEEECCC-----EEEEecC---CCcEEEEeCCCC---e------EEEEEcc---ccccEEEEEEc--CCEEEEE
Q 013881 272 HSLAVVSLVVGAN-----KLYSGSM---DNSIRVWNLETL---Q------CIQTLTE---HTSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 272 h~~~v~~l~~~~~-----~l~s~s~---dg~i~vwd~~~~---~------~~~~~~~---~~~~v~~l~~~--~~~l~s~ 329 (434)
|...-..+...++ .|+.+.. .+.+++-++... . .+..+.. ..+--.++..+ -+.+..-
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 8877766666543 2332222 268999988432 1 1111111 13334566666 4578888
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG 394 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 394 (434)
+.-|.|.+||+.++.++..-.-.... +..-+..... + =+++-...|.|.--.++....+.
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~--iF~ta~~~~~-~--Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGET--IFVTAPHEAT-A--GIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC--EEEEEEEGGG-T--EEEEEETTCEEEEEEECTTTHHH
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCc--eEEecccCCC-C--cEEEEcCCCEEEEEEECcccEeh
Confidence 99999999999999877655544433 3333322221 2 24445578888777776655443
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.99 E-value=0.0018 Score=66.15 Aligned_cols=243 Identities=10% Similarity=-0.024 Sum_probs=124.7
Q ss_pred Cccc-cEEEEEcc-CCCCEEEEEEC-CC----cEEEEECCCC-ceEE-EEecCCceEEEEeCCCEEEE-EcC-----CcE
Q 013881 148 GHQK-VVSGITLP-SGSDKLYSGSK-DE----TVRVWDCASG-QCAG-VINLGGEVGCMISEGPWIFI-GVT-----NFV 212 (434)
Q Consensus 148 ~h~~-~V~~l~~s-~~~~~l~s~s~-dg----~v~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~-~~~-----~~i 212 (434)
+|.- .+...+|| |||++||-+.. +| +|+++|+.++ +.+. .+.....-....++++.|+. ..+ ..|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 3443 68889999 99998875433 33 5999999998 6321 11111111223446655554 333 257
Q ss_pred EEEECCCCce---EEec-CCCCcEEEEEEeCC--EEEEEe---CCCcEEEEEcCCCCCccccceeecCccceEEEEE-EC
Q 013881 213 KAWNTQTNTD---LSLS-GPVGQVYAMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VG 282 (434)
Q Consensus 213 ~~w~~~~~~~---~~~~-~~~~~v~~l~~~~~--~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~-~~ 282 (434)
.++++.++.. +.+. ........+.|+++ .|+..+ ....|+++|+..+..................++. ..
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 8888877642 2222 23345678899998 444333 2346888888764211100112223344455665 34
Q ss_pred CCEEEEe-cCC----CcEEEEeCCCCeEEEE-Eccccc--cEEEEEEcCCE-EEEEeCCCcEE--EEEcC------CCCc
Q 013881 283 ANKLYSG-SMD----NSIRVWNLETLQCIQT-LTEHTS--VVMSLLCWDQF-LLSCSLDKTIK--VWFAT------DSGN 345 (434)
Q Consensus 283 ~~~l~s~-s~d----g~i~vwd~~~~~~~~~-~~~~~~--~v~~l~~~~~~-l~s~s~dg~i~--vwd~~------~~~~ 345 (434)
++.|+.. ..+ ..|..+|+.+...... +..+.. .+..+.+.++. +++...++..+ ++++. ....
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence 6655443 333 3677788765322222 222322 45667777554 45556677544 55541 2222
Q ss_pred -eEEEeeecCCccEEEEEecc--CCCCCcEEEEEeCC---CeEEEEeCCCCc
Q 013881 346 -LEVTYTHNEEHGVLALCGMP--DSEGKPVLLCSCND---NSVRFYDLPSFA 391 (434)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~d---g~i~iwd~~~~~ 391 (434)
...+ .......+..+.+.+ ...+..++++.+.. ..+..+|+.+++
T Consensus 410 ~~~~l-~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 410 GLREV-VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCEEC-CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cceEE-CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2222 122222234443333 22333455555443 467778877654
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.98 E-value=0.011 Score=55.02 Aligned_cols=233 Identities=9% Similarity=0.034 Sum_probs=136.0
Q ss_pred eEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEec
Q 013881 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINL 190 (434)
Q Consensus 112 i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~ 190 (434)
..|........++-+....|+..++... .....+.+ ...+..++|++....|+ +-...+.|..+++........+..
T Consensus 79 ~~C~~~~~~~~l~~~~~~~I~~i~~~~~-~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 79 RSCKALGPEPVLLFANRIDIRQVLPHRS-EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEECSSCCEEEEECBSCEEEECTTSC-CCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CeECCccccceeEeecCccceeeccCCC-cEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4466554455555556677888888765 33333333 34578999997655555 445678899999987764444432
Q ss_pred C--Cc-eEEEEeCCCEEEEEc--CCcEEEEECCCCceEE-ecCCCCcEEEEEEeCC--EEE-EEeCC-CcEEEEEcCCCC
Q 013881 191 G--GE-VGCMISEGPWIFIGV--TNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLF-AGTQD-GAILAWKFNVTT 260 (434)
Q Consensus 191 ~--~~-~~~~~~~~~~l~~~~--~~~i~~w~~~~~~~~~-~~~~~~~v~~l~~~~~--~l~-~g~~d-g~i~vwd~~~~~ 260 (434)
. .+ -..+.+.+..|+... .+.|.+.+++...... +.........+++++. .|+ +-... +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 2 11 123333455554433 4578888887655443 3334467789999975 444 43344 678888876542
Q ss_pred CccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCC-EEEEEeCCCcEE
Q 013881 261 NCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIK 336 (434)
Q Consensus 261 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~ 336 (434)
........-.....|+++ ++.|+ +-+..+.|..+|+........+.........+++.++ .+++-...+.|.
T Consensus 237 ----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 237 ----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN 312 (386)
T ss_dssp ----CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred ----cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEE
Confidence 111122223345667775 44544 4456788999998754333333333344566666644 444555577888
Q ss_pred EEEcCCCCceEEEe
Q 013881 337 VWFATDSGNLEVTY 350 (434)
Q Consensus 337 vwd~~~~~~~~~~~ 350 (434)
.++..+++....+.
T Consensus 313 ~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 313 SANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCcceEEEc
Confidence 88865655544443
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.014 Score=59.55 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=130.7
Q ss_pred CEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 202 ~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
.+|+......|+..++.......+......+..|+++.. ++++-...+.|+.+++............+.........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 355666667788888877666555556677889999874 55555666889888887531100111222222233344
Q ss_pred EEEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC-C-CcEEEEEcCCCCceEEEee
Q 013881 279 LVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-D-KTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 279 l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~ 351 (434)
|+++ ++ ++++-...+.|.+.++........+...-.....|+++ ..+|+.... . +.|.+.++..... ..+..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe
Confidence 5554 54 45566677899999987655443343344457788887 345555543 2 6788888754332 22322
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc---cCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---KQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
..-.....|++.+.. ++++++=...+.|..+++........+.. -....+|++..+.++++-...+.|...+..
T Consensus 555 -~~l~~P~GLavD~~~--~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 -ENIQWPNGITLDLLS--GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp -SSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred -CCCCCceEEEEecCC--CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence 222345566665433 33444445567899999865433222221 234557777544366666677888888876
Q ss_pred CCcc
Q 013881 429 NGPV 432 (434)
Q Consensus 429 ~g~~ 432 (434)
+|+.
T Consensus 632 tG~~ 635 (791)
T 3m0c_C 632 TGSD 635 (791)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6643
No 276
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.90 E-value=0.0041 Score=60.30 Aligned_cols=216 Identities=15% Similarity=0.091 Sum_probs=138.0
Q ss_pred ecCCCeEEEEeCCCCceEEEEecC-ccccEEEEEc-c-CCCCEEEEEEC------------------CCcEEEEECCCCc
Q 013881 125 GEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITL-P-SGSDKLYSGSK------------------DETVRVWDCASGQ 183 (434)
Q Consensus 125 g~~d~~i~vwd~~~~~~~~~~l~~-h~~~V~~l~~-s-~~~~~l~s~s~------------------dg~v~iwd~~~~~ 183 (434)
...+..|.+-|+.+. ++.+.+.- .......+++ + |++++++.++. ++.+.+.|.++.+
T Consensus 108 d~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 108 DKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE 186 (595)
T ss_dssp ETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred cCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence 335678999999997 77774432 2346888998 5 99999998852 4689999999999
Q ss_pred eEEEEecCCce--EEEEeCCCEEEEEcC---------------------------------------CcEEEEECCC--C
Q 013881 184 CAGVINLGGEV--GCMISEGPWIFIGVT---------------------------------------NFVKAWNTQT--N 220 (434)
Q Consensus 184 ~~~~~~~~~~~--~~~~~~~~~l~~~~~---------------------------------------~~i~~w~~~~--~ 220 (434)
.+.++..+... ..+.++++++++... +.|.+.|..+ +
T Consensus 187 v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~ 266 (595)
T 1fwx_A 187 VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS 266 (595)
T ss_dssp EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred EEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence 99988864432 233446677666542 2366777766 3
Q ss_pred ce-EEecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCc--------cccceeecCccceEEEEEEC--CCEE
Q 013881 221 TD-LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVG--ANKL 286 (434)
Q Consensus 221 ~~-~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~~~h~~~v~~l~~~--~~~l 286 (434)
.. +....-.....++.++|| .++++..+.+|.++|+.+.... ........ -......++|+ |...
T Consensus 267 ~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY 345 (595)
T 1fwx_A 267 SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAY 345 (595)
T ss_dssp CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEE
T ss_pred ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEE
Confidence 33 211111234557888998 6666678899999999854100 01111221 12345667776 4334
Q ss_pred EEecCCCcEEEEeCCC----------CeEEEEEccccccEE-EE------EEcCCEEEEEeC---CCc----------EE
Q 013881 287 YSGSMDNSIRVWNLET----------LQCIQTLTEHTSVVM-SL------LCWDQFLLSCSL---DKT----------IK 336 (434)
Q Consensus 287 ~s~s~dg~i~vwd~~~----------~~~~~~~~~~~~~v~-~l------~~~~~~l~s~s~---dg~----------i~ 336 (434)
++.-.|++|.+||+.+ .+.+.++..|-.+-. .. ..++++|++... |+. -.
T Consensus 346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~q 425 (595)
T 1fwx_A 346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQ 425 (595)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEE
T ss_pred EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcce
Confidence 5677899999999977 567788877654321 11 223778888764 332 27
Q ss_pred EEEcCC
Q 013881 337 VWFATD 342 (434)
Q Consensus 337 vwd~~~ 342 (434)
++|+..
T Consensus 426 l~dis~ 431 (595)
T 1fwx_A 426 LIDISG 431 (595)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 888843
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.84 E-value=0.05 Score=57.97 Aligned_cols=306 Identities=11% Similarity=0.087 Sum_probs=155.3
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCC-ceEEEEecCccccEEEEEccCC------CCEEEEEEC-CCcEEEEECCCC
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSG------SDKLYSGSK-DETVRVWDCASG 182 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~l~~h~~~V~~l~~s~~------~~~l~s~s~-dg~v~iwd~~~~ 182 (434)
.|.+.+..+..++.++ ++.|..++++++ .+.+.... -...|.|+++.|. +++++.|.. |++|+|+++.+.
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 4555554445555554 677888877654 12222222 3468999999763 479999997 999999999988
Q ss_pred ceEEEEecCC--ceEEEE---e-CCCEEEEEc-CCcEEEE--ECCCCceE----EecCCCCcEEEEEEeCC---EEEEEe
Q 013881 183 QCAGVINLGG--EVGCMI---S-EGPWIFIGV-TNFVKAW--NTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGT 246 (434)
Q Consensus 183 ~~~~~~~~~~--~~~~~~---~-~~~~l~~~~-~~~i~~w--~~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~g~ 246 (434)
+.+....... .+.++. . ...+|.++. +|.+..+ |..++... ...+ ..++.-..+... .+++.+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s 671 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS 671 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC
Confidence 8776666543 233221 2 234566654 6655444 43444432 1222 223332223221 233333
Q ss_pred CCCcEEEEEcCCCCCccccceeecCccceEEEE-EEC----CCEEEEecCCCcEEEEeCCCCe--EEEEEccccccEEEE
Q 013881 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL-VVG----ANKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSVVMSL 319 (434)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l-~~~----~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l 319 (434)
+....++.-+.. -....+. ...+..+ .|+ ++-++..+ ++.++|..+.+.+ .++++.- ...+..+
T Consensus 672 -~rp~liy~~~~~----l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri 742 (1158)
T 3ei3_A 672 -DRPTVIYSSNHK----LVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKI 742 (1158)
T ss_dssp -SSCEEEEESSSS----EEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEE
T ss_pred -CCCEEEEEcCCc----eEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEE
Confidence 333333432211 0011111 1122222 222 34455444 4458887765422 1222211 2233444
Q ss_pred EEc--CCEEEEEe-------------------------------------------------CCCcEEEEEcCCCCceEE
Q 013881 320 LCW--DQFLLSCS-------------------------------------------------LDKTIKVWFATDSGNLEV 348 (434)
Q Consensus 320 ~~~--~~~l~s~s-------------------------------------------------~dg~i~vwd~~~~~~~~~ 348 (434)
+++ .+.++.+. .-+.|++.|..+.+.+..
T Consensus 743 ~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~ 822 (1158)
T 3ei3_A 743 CYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHA 822 (1158)
T ss_dssp EEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEE
Confidence 444 12211111 013477777766655443
Q ss_pred EeeecCCccEEEEEeccCC-CCCcEEEEEe----------CCCeEEEEeCCCCc--ccccccccCcEEEEEecCCcEEEE
Q 013881 349 TYTHNEEHGVLALCGMPDS-EGKPVLLCSC----------NDNSVRFYDLPSFA--ERGKIFAKQEIRAIQLGPGGLFFT 415 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~----------~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~spdg~l~s 415 (434)
+.-. ....+.+++..... +...++++|+ ..|.|++|++...+ .+.+...++.|++++-- +|+|++
T Consensus 823 ~~l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla 900 (1158)
T 3ei3_A 823 HQFL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLA 900 (1158)
T ss_dssp EECC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEE
T ss_pred EeCC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEE
Confidence 3332 22345555543322 2345888887 34789999986432 22223347889998754 355554
Q ss_pred eCCCCCEEEEEccCCc
Q 013881 416 GDGTGQVRVWQWCNGP 431 (434)
Q Consensus 416 ~~~dg~i~iwd~~~g~ 431 (434)
|- ...|++|++...+
T Consensus 901 ~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 901 SI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EE-TTEEEEEEECTTS
T ss_pred Ec-CCEEEEEECCCCc
Confidence 43 3689999998765
No 278
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.83 E-value=0.037 Score=56.44 Aligned_cols=303 Identities=15% Similarity=0.145 Sum_probs=166.2
Q ss_pred ccceEEEEE-eCCcEEEecCCCeEEEEeCCCCceEEEEe-cCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE
Q 013881 109 KTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 109 ~~~i~c~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (434)
.+.|.|+.- ..+.+..|+.+| |..||-.+ ++..... ......|.+|....++ .|..|+.+| +..+|..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~-~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYS-TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSC-EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCc-eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 347888887 456688888877 55566332 1111100 1123568888877665 566677766 7899988765432
Q ss_pred EEe-cCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEec-----CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCC
Q 013881 187 VIN-LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-----GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT 259 (434)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~-----~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~ 259 (434)
... ....+.++...+..+.++..+.+..++..+++...+. .....|.++....+ .|..|+.+ -|..++....
T Consensus 97 ~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 175 (758)
T 3ott_A 97 PETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNG 175 (758)
T ss_dssp CSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTT
T ss_pred cccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCC
Confidence 100 1123444444444555555568888998877655431 12356888887755 55566665 4777876654
Q ss_pred CCccccceeecC----ccceEEEEEEC--CCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc-CCEEEEEeCC
Q 013881 260 TNCFEPAASLKG----HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLD 332 (434)
Q Consensus 260 ~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~d 332 (434)
.. ... .... ....|.++..+ ++.|..|+. +-|..+|..+++...........|.++..+ ...|..|+.
T Consensus 176 ~~--~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~- 250 (758)
T 3ott_A 176 KF--EGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD- 250 (758)
T ss_dssp EE--EEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-
T ss_pred ce--EEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-
Confidence 21 111 1111 12347788775 455666664 568889988765432222233457788777 556667775
Q ss_pred CcEEEEEcCCCCceEEEeeec------CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC-Ccccc-----cccccC
Q 013881 333 KTIKVWFATDSGNLEVTYTHN------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS-FAERG-----KIFAKQ 400 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-----~~~~~~ 400 (434)
+-+.+++..+... ..+.... ....+.++.. +..+ .|..|+..| +.++.... .+... ......
T Consensus 251 ~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~--D~~g--~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (758)
T 3ott_A 251 NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFA--DQEH--NIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGN 324 (758)
T ss_dssp TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEE--CTTC--CEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCC
T ss_pred CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEE--cCCC--CEEEEeCCc-ccccccCCceeEEecccCCCCCCCc
Confidence 4588888755432 2222111 1123555543 3333 256666667 54443321 11110 001134
Q ss_pred cEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 401 EIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 401 ~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
.|.++.-..+|.|-.|+.+| +..++..
T Consensus 325 ~v~~i~~D~~g~lWiGt~~G-l~~~~~~ 351 (758)
T 3ott_A 325 QFYSLFRDSKGFYWFGGANG-LIRFTDP 351 (758)
T ss_dssp BEEEEEECTTCCEEEEETTE-EEEESCT
T ss_pred eEEEEEEcCCCCEEEeeCCc-ceeeccc
Confidence 68898888888444444555 4445433
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.0045 Score=55.95 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=127.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC
Q 013881 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (434)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~ 240 (434)
...+++.....+-+.+||+ +|+.++.+.. +.+..+..-+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---------------------------------------g~~nnVD~r~~ 78 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---------------------------------------GKLNNVDIRYD 78 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC---------------------------------------SCEEEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC---------------------------------------CCcccEEEecc
Confidence 4456777777788999999 7777766542 12222222221
Q ss_pred ---------EEEEEe-C--CCcEEEEEcCCCCCcccccee----ecCccceEEEEEE--C---CC-EEEEecCCCcEEEE
Q 013881 241 ---------LLFAGT-Q--DGAILAWKFNVTTNCFEPAAS----LKGHSLAVVSLVV--G---AN-KLYSGSMDNSIRVW 298 (434)
Q Consensus 241 ---------~l~~g~-~--dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~--~---~~-~l~s~s~dg~i~vw 298 (434)
++++.. . +++|.+|++......+..+.. +......+..+++ + +. ++++...+|.+..|
T Consensus 79 ~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~ 158 (355)
T 3amr_A 79 FPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQY 158 (355)
T ss_dssp EEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEE
T ss_pred cccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEE
Confidence 223333 3 578999988533221122211 0011133334444 3 33 68888889999999
Q ss_pred eC-------CCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCC--ceEEEeee--c-CCccEEEEEec
Q 013881 299 NL-------ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG--NLEVTYTH--N-EEHGVLALCGM 364 (434)
Q Consensus 299 d~-------~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~--~-~~~~~~~~~~~ 364 (434)
++ .+.+.+++|... +.+-.+..+ ...|+.+-++..|..++.+... ....+... . ....+-.++..
T Consensus 159 ~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 159 ELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp EEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred EEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 88 345667777654 356666666 5799999999777777754221 11222111 1 11245666665
Q ss_pred cCCCCCcEEEEEe-CCCeEEEEeCC-CCccccccc-----------ccCc--EEEEEec---CCcEEEEeCC--------
Q 013881 365 PDSEGKPVLLCSC-NDNSVRFYDLP-SFAERGKIF-----------AKQE--IRAIQLG---PGGLFFTGDG-------- 418 (434)
Q Consensus 365 ~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~-----------~~~~--v~~~~~s---pdg~l~s~~~-------- 418 (434)
+...+..+|++++ .++++.+||.. +.+.+..+. .... |..+.+. |.|++++-+.
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~ 317 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQK 317 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEE
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCC
Confidence 4443343555555 67899999996 555555542 1122 3444442 5676665443
Q ss_pred -CCCEEEEEcc
Q 013881 419 -TGQVRVWQWC 428 (434)
Q Consensus 419 -dg~i~iwd~~ 428 (434)
+...++.+++
T Consensus 318 ~~qnFk~v~w~ 328 (355)
T 3amr_A 318 ANQNFKIVPWE 328 (355)
T ss_dssp CCCEEEEEEHH
T ss_pred cCceEEEEEHH
Confidence 5677887764
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.80 E-value=0.02 Score=52.41 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=135.5
Q ss_pred ceEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-ECCCcEEEEECCCCceEEEEe
Q 013881 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGVIN 189 (434)
Q Consensus 111 ~i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~ 189 (434)
..+|....+...+.-+....|+..++... .....+.+. ..+..++|++....|+-+ ...+.|..+++........+.
T Consensus 35 ~~~C~~~~~~~~ll~~~~~~I~~i~~~g~-~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGPEPVLLFANRIDIRQVLPHRS-EYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSSCCEEEEECBSCEEEECTTSC-CEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCcccccccCceeEeecccceEEEeCCCC-eeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34566554444455555566888888764 444444433 457899999766655544 467889999998776444443
Q ss_pred cC-CceE--EEEeCCCEEEEE--cCCcEEEEECCCCceEE-ecCCCCcEEEEEEeCC---EEEEEeCC-CcEEEEEcCCC
Q 013881 190 LG-GEVG--CMISEGPWIFIG--VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND---LLFAGTQD-GAILAWKFNVT 259 (434)
Q Consensus 190 ~~-~~~~--~~~~~~~~l~~~--~~~~i~~w~~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~g~~d-g~i~vwd~~~~ 259 (434)
.. .... .+.+.+..|+.. ..+.|.+.+++...... ..........++++|. ++++-... +.|..++++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 22 1222 333345555443 35689999988765443 3344567789999975 44444444 78888887653
Q ss_pred CCccccceeecCccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEE-EEEeCCCcE
Q 013881 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFL-LSCSLDKTI 335 (434)
Q Consensus 260 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l-~s~s~dg~i 335 (434)
.. .......-.....|+++ ++.|+ +-...+.|..+|+........+.........+++.++.| ++-...+.|
T Consensus 193 ~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V 268 (349)
T 3v64_C 193 GR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSI 268 (349)
T ss_dssp SC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred Cc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeE
Confidence 21 11111223345677775 45554 445567899999875433333333334455666665444 444456778
Q ss_pred EEEEcCCCCceEEE
Q 013881 336 KVWFATDSGNLEVT 349 (434)
Q Consensus 336 ~vwd~~~~~~~~~~ 349 (434)
..++..+++....+
T Consensus 269 ~~~~~~~G~~~~~i 282 (349)
T 3v64_C 269 NSANKFTGKNQEII 282 (349)
T ss_dssp EEEETTTCCSCEEE
T ss_pred EEEEccCCCccEEe
Confidence 88875555544443
No 281
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.79 E-value=0.023 Score=52.66 Aligned_cols=252 Identities=8% Similarity=0.058 Sum_probs=166.3
Q ss_pred CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe-CCCEEE
Q 013881 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIF 205 (434)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 205 (434)
....|.|-|+..+.+..+.-..-..+| .+|..+.||-=. ..++.|+|+++.+.++.+...+.+...-+ +...|+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA 120 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCSEEE----ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCcceecccccceee----eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEE
Confidence 344788889887655544433333333 578777777655 68899999999999999999888776654 788888
Q ss_pred EEcCCcEEEEECCCCc--eEEecCC----CCcEEEEEEeCC---EEEEEe------CCCcEEEEEcCCCCCccccceeec
Q 013881 206 IGVTNFVKAWNTQTNT--DLSLSGP----VGQVYAMAVGND---LLFAGT------QDGAILAWKFNVTTNCFEPAASLK 270 (434)
Q Consensus 206 ~~~~~~i~~w~~~~~~--~~~~~~~----~~~v~~l~~~~~---~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~ 270 (434)
.-++..|+-|+++... ...+..| ..+|.....+++ .+++|- -.|.+.+|..+.+ ....+.
T Consensus 121 lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ie 195 (494)
T 1bpo_A 121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIE 195 (494)
T ss_dssp EECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEEC
T ss_pred EEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchhe
Confidence 8999999999997532 2233333 467777777777 444443 2477889988764 567788
Q ss_pred CccceEEEEEECCC-----EEEEecC---CCcEEEEeCCCC--------eEEEEE-cc---ccccEEEEEEc--CCEEEE
Q 013881 271 GHSLAVVSLVVGAN-----KLYSGSM---DNSIRVWNLETL--------QCIQTL-TE---HTSVVMSLLCW--DQFLLS 328 (434)
Q Consensus 271 ~h~~~v~~l~~~~~-----~l~s~s~---dg~i~vwd~~~~--------~~~~~~-~~---~~~~v~~l~~~--~~~l~s 328 (434)
+|...-..+..+++ .+..+.. .+.++|.++... +....+ -. ..+--.++..+ -+.+..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 99888777777653 3333333 378999998542 111111 11 12334556666 457888
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 329 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
.+.-|.|.+||+.++..+..-.-... .+..-+..... + =+++-...|.|.--.++....+
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~-~--Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEAT-A--GIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTT-T--EEEEEETTCEEEEEEECTTTHH
T ss_pred EecCceEEEEecccceeeeeecccCC--ceEEecccCCC-C--cEEEEccCceEEEEEEccccch
Confidence 89999999999999987766554433 34333332222 2 2445558888877777665544
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.65 E-value=0.032 Score=50.48 Aligned_cols=262 Identities=11% Similarity=-0.002 Sum_probs=133.5
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEec-----CCceEEEEe-CCCEEEEEcCCcEEEEECCCCceE
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-----GGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL 223 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~i~~w~~~~~~~~ 223 (434)
...+.+|.|.+++..++ ++.+|.| +.....++.=..... ...+..+.+ ++..++++..+.|.. ..+.++..
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW 111 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSW 111 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSC
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCCc
Confidence 45789999987777777 5567755 334444432222211 223445544 334444555554433 44444433
Q ss_pred Eec----CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECC--CEEEEecCCCcEE
Q 013881 224 SLS----GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIR 296 (434)
Q Consensus 224 ~~~----~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 296 (434)
... .+...+..+.+.++ .++.++.+|.|. ........++... ......+..+.+.+ .+++.+ .+|.+.
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~--~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g-~~G~~~ 186 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIY--RTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVS-SRGSFY 186 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEE--EESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEE-TTSSEE
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeCCccEE--EEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEE-CCCcEE
Confidence 221 23356777777544 555555566543 2332222233222 23445677777753 345444 445444
Q ss_pred E-EeC--CCCeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceEEEeee--cCCccEEEEEeccCCCCC
Q 013881 297 V-WNL--ETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH--NEEHGVLALCGMPDSEGK 370 (434)
Q Consensus 297 v-wd~--~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 370 (434)
. +|- .+.+.+. ......+..+.+. +..++.++.+|.+++.+...+......... .....+..+.+.+..
T Consensus 187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~--- 261 (327)
T 2xbg_A 187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN--- 261 (327)
T ss_dssp EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS---
T ss_pred EEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC---
Confidence 3 442 3333332 2345567777776 445666777888777642212111111111 111246677766432
Q ss_pred cEEEEEeCCCeEEEEeCCCCccccccc----ccCcEEEEEecCCcEEEEeCCCCCEEEEE
Q 013881 371 PVLLCSCNDNSVRFYDLPSFAERGKIF----AKQEIRAIQLGPGGLFFTGDGTGQVRVWQ 426 (434)
Q Consensus 371 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~spdg~l~s~~~dg~i~iwd 426 (434)
.++++ +.++.| ++..+.++.-..+. ....+..+.|.+++.+++++.+|.|.-++
T Consensus 262 ~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 25554 457766 34444443322222 23567888887666677777889766554
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.64 E-value=0.042 Score=51.34 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=127.6
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCCCceEEEEecCCceEEEEeC
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVGCMISE 200 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (434)
.++-+....|+..++... .....+. ....+..|+|++....|+-+. ..+.|+.+++.......
T Consensus 85 ~ll~~~~~~I~~i~l~~~-~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-------------- 148 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------------- 148 (400)
T ss_dssp EEEEEETTEEEEECTTSC-SCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C--------------
T ss_pred eeEEeccceeEEEccCCc-ceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC--------------
Confidence 344444567888888764 3333333 456788999998666555444 45777777775421000
Q ss_pred CCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC--C-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEE
Q 013881 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 201 ~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
...............+++.. . +.++-...+.|.+.+++... ....+........
T Consensus 149 -------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----~~~l~~~~~~~P~ 205 (400)
T 3p5b_L 149 -------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFRENGSKPR 205 (400)
T ss_dssp -------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS----EEEEEECSSCCEE
T ss_pred -------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc----eEEEEeCCCCCcc
Confidence 00001222234556677764 2 44555567788888876542 1222222233456
Q ss_pred EEEEC--CCEEEEec--CCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceEEEe
Q 013881 278 SLVVG--ANKLYSGS--MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 278 ~l~~~--~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~ 350 (434)
.|+++ +.+|+... ..+.|...++........+...-.....|+++ ++.|..+ +....|..+|+..........
T Consensus 206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 285 (400)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE
T ss_pred eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe
Confidence 77775 34555443 24789999886544333333333456778887 4555555 456789999986543333322
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF 397 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 397 (434)
..........++.. ++.++++-...+.|..+|..+++.+..+.
T Consensus 286 ~~~~l~~P~gl~v~----~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 286 DEKRLAHPFSLAVF----EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp CSSTTSSEEEEEEE----TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCCCCCEEEEEe----CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 21112234455541 22366666677889999977776655543
No 284
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.52 E-value=0.14 Score=54.48 Aligned_cols=310 Identities=14% Similarity=0.128 Sum_probs=171.7
Q ss_pred ceEEEEEeC---CcEEEecCCCeEEEEeCCCCce-----EEEEecC----ccccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 111 DILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFK-----LLTQLEG----HQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 111 ~i~c~~~~~---~~~~~g~~d~~i~vwd~~~~~~-----~~~~l~~----h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
.+.|....+ ..++.+..+|.++.-.+..... .+..++- -...-++|++-. +.+|+.||..|.=.+|.
T Consensus 275 ~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~-~g~lFvgS~~Gds~l~~ 353 (1158)
T 3ei3_A 275 TIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLD-NGVVFVGSRLGDSQLVK 353 (1158)
T ss_dssp CEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECS-TTEEEEECSSSCEEEEE
T ss_pred eEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEEC-CCEEEEEEecCCcEEEE
Confidence 344544422 3477788888887655431101 2222221 112224555553 44888999888777777
Q ss_pred CCCC--------ceEEEEecCCceEEEEe------CCCEEE-EE---cCCcEEEEECCCCceE----EecCCCCcEEEEE
Q 013881 179 CASG--------QCAGVINLGGEVGCMIS------EGPWIF-IG---VTNFVKAWNTQTNTDL----SLSGPVGQVYAMA 236 (434)
Q Consensus 179 ~~~~--------~~~~~~~~~~~~~~~~~------~~~~l~-~~---~~~~i~~w~~~~~~~~----~~~~~~~~v~~l~ 236 (434)
+... +.+..+..-+++..+.- ....++ ++ .++.++++...-+... .+. ....++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~ 432 (1158)
T 3ei3_A 354 LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLR 432 (1158)
T ss_dssp ECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEEC
T ss_pred EecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEe
Confidence 7643 34566666666665532 122343 32 3567777654332221 222 335666665
Q ss_pred Ee-----CCEEEEEeCCCcEEEEEcCCCCCccccc--eeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEE
Q 013881 237 VG-----NDLLFAGTQDGAILAWKFNVTTNCFEPA--ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309 (434)
Q Consensus 237 ~~-----~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 309 (434)
.. .++|+.+..+.+ .++.+.... .+.+ ..+......+.+-...++.++=.. ...|++.+....+.+..+
T Consensus 433 ~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~--veev~~~gf~~~~~TL~~~~l~~~~ivQVt-~~~Irli~~~~~~~~~~w 508 (1158)
T 3ei3_A 433 SDPNRETDDTLVLSFVGQT-RVLMLNGEE--VEETELMGFVDDQQTFFCGNVAHQQLIQIT-SASVRLVSQEPKALVSEW 508 (1158)
T ss_dssp CCSSCSSCCEEEEEETTEE-EEEEEETTE--EEEECCTTCCSSSCEEEEEEETTTEEEEEE-SSCEEEEESSSCCEEEEE
T ss_pred ecCCCCCCCEEEEECCCCe-EEEEEeCCc--ccccccccccCCCCcEEEEEcCCCeEEEEe-cCEEEEEECCCCeEEEEE
Confidence 43 126666666655 555553211 1111 011111122222223334444333 345778887666667777
Q ss_pred ccc-cccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCC---CCcEEEEEeC-CCeEEE
Q 013881 310 TEH-TSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE---GKPVLLCSCN-DNSVRF 384 (434)
Q Consensus 310 ~~~-~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~-dg~i~i 384 (434)
... ...|...+.++.+++.++ ++.+.++++.++ .+.......-...+.++++.+.++ ...++++|.. |++|+|
T Consensus 509 ~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~-~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 509 KEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETT-EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCC-ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 643 346777777777777775 678888888754 333333333445688888776432 2458999996 999999
Q ss_pred EeCCCCcccccccc--cCcEEEEEec--CCc-EEEEeCCCCCEEEEEcc
Q 013881 385 YDLPSFAERGKIFA--KQEIRAIQLG--PGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 385 wd~~~~~~~~~~~~--~~~v~~~~~s--pdg-~l~s~~~dg~i~iwd~~ 428 (434)
+++++.+.+..... .....++.+. ... +|..|-.||.+.-+.+.
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 99998665543222 2233444332 234 88999999998776664
No 285
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.51 E-value=0.0081 Score=63.73 Aligned_cols=252 Identities=12% Similarity=0.109 Sum_probs=136.1
Q ss_pred cEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCCcE
Q 013881 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAI 251 (434)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i 251 (434)
+|.|-|+..+..+..........-+.+....++.-....+.++|+++...+........|.--.|-.. .|+..+ +..|
T Consensus 49 ~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~aV 127 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAV 127 (1630)
T ss_pred eEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCeE
Confidence 56677776665544333333444444555666666667888888887776644344455666677555 444333 4569
Q ss_pred EEEEcCCCCCccccceeecCc----cceEEEEEECC--CEEE-Ee------cCCCcEEEEeCCCCeEEEEEccccccEEE
Q 013881 252 LAWKFNVTTNCFEPAASLKGH----SLAVVSLVVGA--NKLY-SG------SMDNSIRVWNLETLQCIQTLTEHTSVVMS 318 (434)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~h----~~~v~~l~~~~--~~l~-s~------s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 318 (434)
+.|++.... .|...+.-| ...|.....++ ++++ +| .-.|.+.+|..+.+ .-+.+.+|.+.-..
T Consensus 128 yHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhe
Confidence 999996532 333333333 34455555553 3433 22 24578889987653 34556666655544
Q ss_pred EEEcC----CEEEE-EeC---CCcEEEEEcCCC--Cc--e-----EEEeeec-CCccEEEEEeccCCCCCcEEEEEeCCC
Q 013881 319 LLCWD----QFLLS-CSL---DKTIKVWFATDS--GN--L-----EVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDN 380 (434)
Q Consensus 319 l~~~~----~~l~s-~s~---dg~i~vwd~~~~--~~--~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg 380 (434)
+...+ ..|++ +.. .+.+.|-++... +. . ..++... ...-..++..++... ++..-+.-|
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g---~iy~itk~G 280 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKYG 280 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC---EEEEEecCc
Confidence 44432 12222 221 268888888543 10 0 0111110 011122333333222 677778899
Q ss_pred eEEEEeCCCCcccccccc-cCcEEEEEecCC-cEEEEeCCCCCEEEEEccCCcc
Q 013881 381 SVRFYDLPSFAERGKIFA-KQEIRAIQLGPG-GLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 381 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~spd-g~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.|++||+.++..+..-.- ...|-..+.... +-++.....|.|.--.+....+
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred eEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 999999999988876443 334443333333 2344444667666655555443
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.50 E-value=0.052 Score=48.85 Aligned_cols=221 Identities=10% Similarity=0.046 Sum_probs=120.2
Q ss_pred cCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEE-ECCCcEEEEECCCC---ceEEEEecCCceEEEEeCC
Q 013881 126 EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASG---QCAGVINLGGEVGCMISEG 201 (434)
Q Consensus 126 ~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 201 (434)
+....|+..|+.+. +....+. .-....+++|++++..|+.+ ...+.|..+++... .....
T Consensus 7 ~~~~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-------------- 70 (316)
T 1ijq_A 7 TNRHEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------- 70 (316)
T ss_dssp ECBSSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--------------
T ss_pred ECCCeEEEEECCCc-ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE--------------
Confidence 34456888888875 4434343 34567899999876555544 44678888887651 11111
Q ss_pred CEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC--C-EEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEE
Q 013881 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (434)
Q Consensus 202 ~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 278 (434)
.+.........+++++ . +.++-...+.|.+.++.... ..............
T Consensus 71 ----------------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~P~~ 124 (316)
T 1ijq_A 71 ----------------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFRENGSKPRA 124 (316)
T ss_dssp ----------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS----EEEEEECTTCCEEE
T ss_pred ----------------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc----eEEEEECCCCCcce
Confidence 0111112334666653 2 44454667888888876531 11112222234566
Q ss_pred EEEC--CCEEEEecC-C-CcEEEEeCCCCeEEEEE-ccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceEEEe
Q 013881 279 LVVG--ANKLYSGSM-D-NSIRVWNLETLQCIQTL-TEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 279 l~~~--~~~l~s~s~-d-g~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~ 350 (434)
++++ +..|+.+.. . +.|...++.. +....+ ...-.....++++ ++.|..+ +..+.|..+|+... ....+.
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~ 202 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTIL 202 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEe
Confidence 7775 345544443 3 6888888754 333333 2233455778887 4555544 45678999998643 333333
Q ss_pred ee-cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccc
Q 013881 351 TH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERG 394 (434)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 394 (434)
.. ........++.. . +.++++-...+.|..++..+++.+.
T Consensus 203 ~~~~~~~~P~giav~--~--~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF--E--DKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp ECTTTTSSEEEEEEE--T--TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred ecCCccCCcEEEEEE--C--CEEEEEECCCCeEEEEeCCCCcceE
Confidence 22 111234455542 2 3366666677889999876665443
No 287
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.44 E-value=0.14 Score=52.28 Aligned_cols=301 Identities=13% Similarity=0.186 Sum_probs=166.6
Q ss_pred cceEEEEEe-CCcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEE
Q 013881 110 TDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (434)
Q Consensus 110 ~~i~c~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (434)
..|.|+.-. .+.+..|+.+| |..+|..+. +...........|.++.. .++ .|..++.+ -|..+|..+++.. .+
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~-~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRAD-RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF 136 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTT-EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCC-EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence 467887664 45677787655 789998875 332211112345777764 344 56666666 4888998776543 33
Q ss_pred e------cCCceEEEEeC-CCEEEEEcCCcEEEEECCCCceEEecCC------CCcEEEEEEeCC--EEEEEeCCCcEEE
Q 013881 189 N------LGGEVGCMISE-GPWIFIGVTNFVKAWNTQTNTDLSLSGP------VGQVYAMAVGND--LLFAGTQDGAILA 253 (434)
Q Consensus 189 ~------~~~~~~~~~~~-~~~l~~~~~~~i~~w~~~~~~~~~~~~~------~~~v~~l~~~~~--~l~~g~~dg~i~v 253 (434)
. ....+.++..+ ...+.++..+.+..++..++....+... ...|.++....+ .|..|+. +-|..
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~ 215 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ 215 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence 1 12345565542 3344444556688888877665433211 234888888753 5666664 45888
Q ss_pred EEcCCCCCccccceeecCccceEEEEEECC-CEEEEecCCCcEEEEeCCCCeEEEEEcc--------ccccEEEEEEc-C
Q 013881 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTE--------HTSVVMSLLCW-D 323 (434)
Q Consensus 254 wd~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~l~~~-~ 323 (434)
+|..+.. +.....+ ....|.++..+. ..|..|+. +-|.+++..+.+.. .+.. ....|.++..+ .
T Consensus 216 ~~~~~~~--~~~~~~l--~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 216 YFPSTGQ--IKQTEAF--HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EETTTTE--EEEEEEE--EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTT
T ss_pred EcCCCCe--EEeccCC--CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 8876542 1111111 234577887763 45666664 45888998775543 2221 23458888877 4
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeee-----cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc--cccc
Q 013881 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE--RGKI 396 (434)
Q Consensus 324 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~ 396 (434)
..|-.|+..| +.++... ......... .....+.++.. +.++ .|..|+.+| +..++..+++. ...+
T Consensus 290 g~lWiGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~--D~~g--~lWiGt~~G-l~~~~~~~~~~~~~~~~ 361 (758)
T 3ott_A 290 HNIWLGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFR--DSKG--FYWFGGANG-LIRFTDPAGERHDAIWY 361 (758)
T ss_dssp CCEEEEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEE--CTTC--CEEEEETTE-EEEESCTTSSCCCCEEE
T ss_pred CCEEEEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEE--cCCC--CEEEeeCCc-ceeecccccccceeEEe
Confidence 5677777766 5554321 122221110 11123555543 3333 255566554 66666554311 1011
Q ss_pred --------cccCcEEEEEecCCcEEEEeCCCCCEEEEEccCCcc
Q 013881 397 --------FAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 397 --------~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~g~~ 432 (434)
.....|.++.-..+|.|-.|+. +-|..|+..++++
T Consensus 362 ~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~ 404 (758)
T 3ott_A 362 RMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQF 404 (758)
T ss_dssp CTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEE
T ss_pred ccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcE
Confidence 1134689998888884444543 4588888877653
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.43 E-value=0.036 Score=49.28 Aligned_cols=184 Identities=10% Similarity=0.095 Sum_probs=94.7
Q ss_pred EEEEEeCC-----CcEEEEEcCCCCC-ccccceeecCccceEEEEEECCCEEEEecCC-----CcEEEEeCCCCeEEE--
Q 013881 241 LLFAGTQD-----GAILAWKFNVTTN-CFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCIQ-- 307 (434)
Q Consensus 241 ~l~~g~~d-----g~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~-- 307 (434)
+++.|+.+ ..+.+||+.+... .++.+..+.........+..++..++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 144 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG 144 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC
Confidence 66666654 4688888877531 0222222222222223344566666777643 368899988765332
Q ss_pred EEccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC---
Q 013881 308 TLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND--- 379 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--- 379 (434)
.+......-.++.+.+..++.|+.+ ..+.+||+.+..-.. +..........++... ++.+++.|+.+
T Consensus 145 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 145 DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VTPMATKRSGAGVALL----NDHIYVVGGFDGTA 219 (301)
T ss_dssp ECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE----TTEEEEECCBCSSS
T ss_pred CCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe-CCCCCcccccceEEEE----CCEEEEEeCCCCCc
Confidence 2222222223444456666776654 468889987653222 2111111111111111 23477777754
Q ss_pred --CeEEEEeCCCCcc--cccccc-cCcEEEEEecCCc-EEEEeCCC-----CCEEEEEccCCc
Q 013881 380 --NSVRFYDLPSFAE--RGKIFA-KQEIRAIQLGPGG-LFFTGDGT-----GQVRVWQWCNGP 431 (434)
Q Consensus 380 --g~i~iwd~~~~~~--~~~~~~-~~~v~~~~~spdg-~l~s~~~d-----g~i~iwd~~~g~ 431 (434)
..+.+||+.+.+- +..+.. ......+.+ ++ .++.|+.+ ..|.+||..+.+
T Consensus 220 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 220 HLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4689999987542 222222 111222222 55 66777655 357888887654
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.41 E-value=0.00059 Score=68.90 Aligned_cols=226 Identities=11% Similarity=-0.005 Sum_probs=121.4
Q ss_pred EEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEE-eCCCcEEEEEcCCCCCccccceeecCccceEEEE
Q 013881 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 279 (434)
+|+......|+..++.+.....+......+..++|++. .|+.+ ...+.|+.+++............+.........|
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred eEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 34444556777778777665544444456678888864 44444 4568899999875110001111111111123345
Q ss_pred EEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEe-CC-CcEEEEEcCCCCceEEEeee
Q 013881 280 VVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LD-KTIKVWFATDSGNLEVTYTH 352 (434)
Q Consensus 280 ~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~d-g~i~vwd~~~~~~~~~~~~~ 352 (434)
+++ ++ ++++-...+.|.++++........+.........|+++ +.+|+.+. .. +.|.++++..... ..+...
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~ 537 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE 537 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeC
Confidence 553 34 44555567899999987654433333222334566665 34444433 22 6777777653322 222111
Q ss_pred cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc---ccCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF---AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
.-.....+++.+.. ++++++-+..+.|..+++........+. .......|++..+.++++....+.|..++..+
T Consensus 538 -~l~~PnGlavd~~~--~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 538 -NIQWPNGITLDLLS--GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp -SCSSCCCEEECTTT--CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred -CCCCccEEEEeccC--CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 11223456665443 3466666677899999987532222211 11233456665555666777788999999877
Q ss_pred Ccc
Q 013881 430 GPV 432 (434)
Q Consensus 430 g~~ 432 (434)
|+.
T Consensus 615 G~~ 617 (699)
T 1n7d_A 615 GSD 617 (699)
T ss_dssp EEE
T ss_pred CCc
Confidence 653
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.41 E-value=0.15 Score=52.02 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=127.5
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEE-EEECCCcEEEEECCCC----ceEEEEecC-Cce-
Q 013881 122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASG----QCAGVINLG-GEV- 194 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~----~~~~~~~~~-~~~- 194 (434)
.++-+....|+..++... .....+. ....+.+|+|++....|+ +-...+.|+.+++... .....+... ...
T Consensus 397 ~Ll~an~~~Ir~i~l~~~-~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECBSSEEEECTTSC-CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccccceeEeeccCC-cceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 344444566777777654 3333333 346678999998555554 5555678999998753 222333211 222
Q ss_pred -EEEEeCCCEEEEEc--CCcEEEEECCCCceEEe-cCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEcCCCCCccccc
Q 013881 195 -GCMISEGPWIFIGV--TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPA 266 (434)
Q Consensus 195 -~~~~~~~~~l~~~~--~~~i~~w~~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~--dg~i~vwd~~~~~~~~~~~ 266 (434)
.++.+.+..|+... .+.|.+.++.......+ .........|++++. .|+.+.. .+.|.+.++.... ..
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~ 550 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IY 550 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eE
Confidence 23333455555543 56899999987765543 334556889999876 5555443 3678888886542 12
Q ss_pred eeecCccceEEEEEEC--CCEEEEe-cCCCcEEEEeCCCCeEEEEEcc--ccccEEEEEEcCCEEEEEe-CCCcEEEEEc
Q 013881 267 ASLKGHSLAVVSLVVG--ANKLYSG-SMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCWDQFLLSCS-LDKTIKVWFA 340 (434)
Q Consensus 267 ~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~s-~dg~i~vwd~ 340 (434)
..+...-.....|+++ .+.|+.+ ...+.|...++........+.. .-....+|++.++.|+.+. ..+.|...|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 2222233456677765 4555554 4567899999865444333332 1233457777766555554 5677888887
Q ss_pred CCCCceEEE
Q 013881 341 TDSGNLEVT 349 (434)
Q Consensus 341 ~~~~~~~~~ 349 (434)
.++..+..+
T Consensus 631 ~tG~~~~~l 639 (791)
T 3m0c_C 631 LTGSDVNLL 639 (791)
T ss_dssp TTCCCCEEE
T ss_pred CCCcceEEe
Confidence 666554444
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.073 Score=47.93 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=127.2
Q ss_pred EecCCCeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEE-EEEECCCcEEEEECCCCceE-EEE--ecCCce-EEE
Q 013881 124 YGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCA-GVI--NLGGEV-GCM 197 (434)
Q Consensus 124 ~g~~d~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~-~~~--~~~~~~-~~~ 197 (434)
.-+....|+..++.... +....+. ....+.+|+|++....| ++-...+.|..+++..+... ..+ ....+. .++
T Consensus 8 l~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 8 LYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred EEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 33445678888888652 1111222 23456789998855544 55556788999998876321 111 112222 233
Q ss_pred EeCCCEEEEE--cCCcEEEEECCCCceEEe-cCCCCcEEEEEEeCC--EEEEEe--CCCcEEEEEcCCCCCccccceeec
Q 013881 198 ISEGPWIFIG--VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGT--QDGAILAWKFNVTTNCFEPAASLK 270 (434)
Q Consensus 198 ~~~~~~l~~~--~~~~i~~w~~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~ 270 (434)
...+..|+.. ..+.|.+++++......+ .........+++.+. .|+.+. ..+.|...++.... ......
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~ 162 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIIN 162 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEEC
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEE
Confidence 3345555544 356899999887654433 345567789999875 555554 35788888876432 111111
Q ss_pred CccceEEEEEEC--CCEEE-EecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCCce
Q 013881 271 GHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNL 346 (434)
Q Consensus 271 ~h~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~ 346 (434)
..-.....|+++ ++.|+ +=+..+.|..+|+........+.........+++.++ .+++-...+.|..++..+++..
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCce
Confidence 222334667775 45555 4456788999998643332223323344566777754 4445455688888888766654
Q ss_pred EEEe
Q 013881 347 EVTY 350 (434)
Q Consensus 347 ~~~~ 350 (434)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.33 E-value=0.012 Score=60.11 Aligned_cols=228 Identities=9% Similarity=0.009 Sum_probs=115.7
Q ss_pred EEE-eCCCEEEEEcC--C----cEEEEECCCC-ceEEecCC-CCcEEEEEEeCC--EEEEEeCC-----CcEEEEEcCCC
Q 013881 196 CMI-SEGPWIFIGVT--N----FVKAWNTQTN-TDLSLSGP-VGQVYAMAVGND--LLFAGTQD-----GAILAWKFNVT 259 (434)
Q Consensus 196 ~~~-~~~~~l~~~~~--~----~i~~w~~~~~-~~~~~~~~-~~~v~~l~~~~~--~l~~g~~d-----g~i~vwd~~~~ 259 (434)
.++ +++.+|+...+ | .|+++|+.++ +.+. .. ......+.|+++ .|+....+ ..|+++++.+.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 345 56776665432 2 4999999998 6321 11 111246789888 55544444 35777887664
Q ss_pred CCccccceeec-CccceEEEEEEC--CCEEEEec---CCCcEEEEeCCCC--eE-EEEEc-cccccEEEEEEc-CCEEEE
Q 013881 260 TNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGS---MDNSIRVWNLETL--QC-IQTLT-EHTSVVMSLLCW-DQFLLS 328 (434)
Q Consensus 260 ~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s---~dg~i~vwd~~~~--~~-~~~~~-~~~~~v~~l~~~-~~~l~s 328 (434)
.. +....+. ........+.++ +++|+..+ ....|+++|+.++ +. +..+. .......++.+. ++.|+.
T Consensus 258 ~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~ 335 (751)
T 2xe4_A 258 QS--EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVI 335 (751)
T ss_dssp GG--GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEE
T ss_pred ch--hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEE
Confidence 21 1112221 222334555664 56665443 3456888999875 22 13333 344556667643 666655
Q ss_pred EeCC-----CcEEEEEcCCCCceEE-EeeecCCccEEEEEeccCCCCCcEEEEEeCCCe--EEEEeC-------CCCccc
Q 013881 329 CSLD-----KTIKVWFATDSGNLEV-TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS--VRFYDL-------PSFAER 393 (434)
Q Consensus 329 ~s~d-----g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~-------~~~~~~ 393 (434)
.+.. ..|..+|+.+...... +..+.....+..+.+. ++.++++...++. |.++++ .+++..
T Consensus 336 ~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~----~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~ 411 (751)
T 2xe4_A 336 LTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR----SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL 411 (751)
T ss_dssp EECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC----SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCC
T ss_pred EeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE----CCEEEEEEEeCCEEEEEEEecccccccccCCccc
Confidence 5443 2566667654222233 3333333334444432 2346777777885 455565 333312
Q ss_pred ccccc--cCcEEEEEe----cCCc--EEEEeCCC---CCEEEEEccCCc
Q 013881 394 GKIFA--KQEIRAIQL----GPGG--LFFTGDGT---GQVRVWQWCNGP 431 (434)
Q Consensus 394 ~~~~~--~~~v~~~~~----spdg--~l~s~~~d---g~i~iwd~~~g~ 431 (434)
..+.. ...+..+.+ ++++ ++++.+.. ..+..+|+.+++
T Consensus 412 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 412 REVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred eEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33322 222344433 3455 44443322 456777776654
No 293
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.31 E-value=0.045 Score=48.68 Aligned_cols=222 Identities=16% Similarity=0.182 Sum_probs=111.9
Q ss_pred CEEEEEECC----CcEEEEECCCCceEEEEecCC---ceEEEEeCCCEEEEEc-C-----CcEEEEECCCCceEEecC--
Q 013881 163 DKLYSGSKD----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T-----NFVKAWNTQTNTDLSLSG-- 227 (434)
Q Consensus 163 ~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~-~-----~~i~~w~~~~~~~~~~~~-- 227 (434)
.+++.|+.+ ..+..+|+.+.+-...-..+. ....+..++.+++.|. + ..+.+||..+.+...+..
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 96 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR 96 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC
Confidence 344444432 357888888775433222221 1122333555555543 2 368889998887554332
Q ss_pred -CCCcEEEEEEeCCEEEEEeCCC-----cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC-------Cc
Q 013881 228 -PVGQVYAMAVGNDLLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-------NS 294 (434)
Q Consensus 228 -~~~~v~~l~~~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------g~ 294 (434)
.......+.+...+++.|+.++ .+.+||+.+.. +..+..+............++..++.|+.+ ..
T Consensus 97 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 97 DRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST 174 (302)
T ss_dssp SCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred ccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence 1122223333333666666553 46777776542 232222222222223344566666666543 45
Q ss_pred EEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCC
Q 013881 295 IRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (434)
Q Consensus 295 i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (434)
+.+||+.+.+-... +........++.+.+..++.|+.+ ..+.+||+.+..-. .+...........++..
T Consensus 175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~~--- 250 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVCAV--- 250 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE---
T ss_pred EEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEEEE---
Confidence 88999987654332 222222223444556677777654 46889998765322 22211111111111111
Q ss_pred CCCcEEEEEeCCC-----eEEEEeCCCCc
Q 013881 368 EGKPVLLCSCNDN-----SVRFYDLPSFA 391 (434)
Q Consensus 368 ~~~~~l~~~~~dg-----~i~iwd~~~~~ 391 (434)
++.+++.|+.++ .+.+||+.+.+
T Consensus 251 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 251 -NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 234777777553 48889887643
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.29 E-value=0.073 Score=46.07 Aligned_cols=201 Identities=10% Similarity=0.095 Sum_probs=114.9
Q ss_pred EEecCccccEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEEEEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCce
Q 013881 144 TQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (434)
Q Consensus 144 ~~l~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~ 222 (434)
+.+.+-.+.+..|+|+|++..|+ +...++.|...|+. ++.++.+...+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g------------------------------ 68 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF------------------------------ 68 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC------------------------------
Confidence 35667767899999999876555 57778999999988 77777654321
Q ss_pred EEecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee------cCccceEEEEEEC--CCEEEEecCC
Q 013881 223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL------KGHSLAVVSLVVG--ANKLYSGSMD 292 (434)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------~~h~~~v~~l~~~--~~~l~s~s~d 292 (434)
......+++.++ ++++.-.++.+.++++...... ...... .........|+++ ++.|+++...
T Consensus 69 ------~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i-~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~ 141 (255)
T 3qqz_A 69 ------VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV-KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK 141 (255)
T ss_dssp ------CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE-EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES
T ss_pred ------CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee-eeeeeeccccccccccCCcceEEEeCCCCEEEEEECc
Confidence 133445555555 3334345566777766554310 001111 1223445788886 4467666655
Q ss_pred CcEEEEeCC---CCeEEEEEc-------cccccEEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceEEEeeecC-----
Q 013881 293 NSIRVWNLE---TLQCIQTLT-------EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE----- 354 (434)
Q Consensus 293 g~i~vwd~~---~~~~~~~~~-------~~~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----- 354 (434)
....+|.+. ....+..+. .+.....+++++ +.+++.......|.++|... + +........
T Consensus 142 ~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 142 NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGL 219 (255)
T ss_dssp SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGC
T ss_pred CCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCc
Confidence 444454443 111222221 123346788888 45777777788899998753 3 333333221
Q ss_pred ---CccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 355 ---EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 355 ---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
....-.+++.+++. |+..++-+.++.|.-.
T Consensus 220 ~~~~~qpEGia~d~~G~----lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGN----IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp SSCCCSEEEEEECTTCC----EEEEETTTEEEEEEC-
T ss_pred ccccCCCCeeEECCCCC----EEEEcCCceEEEEEec
Confidence 12456777766543 4445777777777543
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.23 E-value=0.19 Score=49.70 Aligned_cols=313 Identities=11% Similarity=0.038 Sum_probs=164.6
Q ss_pred eEEEEEeC--CcEEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEE-EECCCcEEEEECCCCceEEE
Q 013881 112 ILCRNWVQ--GNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 112 i~c~~~~~--~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-~s~dg~v~iwd~~~~~~~~~ 187 (434)
...++|.. +.++... ..+.|..+++.........+..--.....|++.+.+..|+. -...+.|.+.++........
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l 121 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence 45667753 3344443 45788888887541122333333357889999986655554 45678999999976544333
Q ss_pred Ee-cCCceEEE--EeCCCEEEEEc---CCcEEEEECCCCceEEe-cCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEcC
Q 013881 188 IN-LGGEVGCM--ISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFN 257 (434)
Q Consensus 188 ~~-~~~~~~~~--~~~~~~l~~~~---~~~i~~w~~~~~~~~~~-~~~~~~v~~l~~~~~--~-l~~g~~dg~i~vwd~~ 257 (434)
+. .-.....+ .+.+..|+.+. ...|...+++......+ .........|+++++ . .++-...+.|...++.
T Consensus 122 ~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 32 11222223 33445555543 34677777776544433 334567789999865 4 4444556788888886
Q ss_pred CCCCccccceeecCccceEEEEEECCCEEEEe-cCCCcEEEEeCCCCeEEEEEccccc----------------------
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSG-SMDNSIRVWNLETLQCIQTLTEHTS---------------------- 314 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~---------------------- 314 (434)
.... .....+.......|++.++.|+.+ ...+.|...|..+++....+.....
T Consensus 202 G~~~----~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~ 277 (619)
T 3s94_A 202 GTNR----QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGI 277 (619)
T ss_dssp CCEE----C---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTT
T ss_pred CCcc----EEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccC
Confidence 5421 111111112234566676665544 4578899999877654433221100
Q ss_pred ---cE--EEE-----------EEcC--------------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEec
Q 013881 315 ---VV--MSL-----------LCWD--------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364 (434)
Q Consensus 315 ---~v--~~l-----------~~~~--------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (434)
.. .|+ +..+ +.++.-+..+.|+..++..............-....++.+.
T Consensus 278 ~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d 357 (619)
T 3s94_A 278 DNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYD 357 (619)
T ss_dssp TGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEE
T ss_pred CCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEE
Confidence 00 111 1110 11222223445666666544322222222222345666665
Q ss_pred cCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc-cCcEEEEEecCC-c-EEEEeCCCCCEEEEEccCC
Q 013881 365 PDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPG-G-LFFTGDGTGQVRVWQWCNG 430 (434)
Q Consensus 365 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~spd-g-~l~s~~~dg~i~iwd~~~g 430 (434)
+. ++.++++-...+.|+.+++........+.. -.....+++.+. + ++++-...+.|.+.++...
T Consensus 358 ~~--~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 358 PV--EGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cC--CCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 43 333555555678888888875332222221 245667888764 4 6666677888988887654
No 296
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.22 E-value=0.098 Score=46.14 Aligned_cols=240 Identities=15% Similarity=0.097 Sum_probs=137.0
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEE-EEecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceE-EecCC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGP 228 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~ 228 (434)
..|..|+.......++ . ||.|..|-....-.+. .......+..+.......++-.++.|..|-....-++ ....-
T Consensus 24 ~~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 3577777654322222 4 8999999765432111 1111234555555444333335889999976543322 11112
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEE
Q 013881 229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT 308 (434)
Q Consensus 229 ~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 308 (434)
...|..++......+.-. +|.|+.|-.....+. .........|..++......+.-. ||.|+.|-......+..
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gql----g~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~ 174 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV 174 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTT----SCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcC----CCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC
Confidence 357899999888555556 999999987654321 111122346788888776655555 79999997654221111
Q ss_pred EccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCC
Q 013881 309 LTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (434)
Q Consensus 309 ~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 388 (434)
-..-...|..++.-....+.- .||.|..|-......+..-. .....+..++.-... .++.. ||.|+.|-..
T Consensus 175 p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h----~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--EALSGVSAIASGEWY----SLALK--NGKVIAWGSS 245 (282)
T ss_dssp CGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--GGGSSCCEEEECSSC----EEEEE--TTEEEEESTT
T ss_pred ceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--ccCCCceEEEcCCCE----EEEEE--CCEEEEecCC
Confidence 112245678888776655555 69999999766554432111 111235555543221 23333 9999999877
Q ss_pred CCcccccccccCcEEEEEecCCc
Q 013881 389 SFAERGKIFAKQEIRAIQLGPGG 411 (434)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~spdg 411 (434)
...++.. ...|.+|+.....
T Consensus 246 ~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 246 RTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp CCCCGGG---SSCEEEEEECSSC
T ss_pred CCccccC---CCCcEEEEECcCe
Confidence 6544433 3467777777665
No 297
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.22 E-value=0.064 Score=57.16 Aligned_cols=251 Identities=8% Similarity=0.087 Sum_probs=151.3
Q ss_pred CCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecCCceEEEEe-CCCEEEE
Q 013881 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFI 206 (434)
Q Consensus 128 d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 206 (434)
...|.|-|+..+..+.+.-..-..+| .+|..+.||-=. ..++.|+|+++.+.++.+....++...-+ +...|+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccccccchhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence 34788888887644433322222222 577777666554 68899999999999999999888877755 7778888
Q ss_pred EcCCcEEEEECCCCceE--EecCC----CCcEEEEEEeCC---EEEEEe------CCCcEEEEEcCCCCCccccceeecC
Q 013881 207 GVTNFVKAWNTQTNTDL--SLSGP----VGQVYAMAVGND---LLFAGT------QDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 207 ~~~~~i~~w~~~~~~~~--~~~~~----~~~v~~l~~~~~---~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
-++..|..|++...... .+..| ..+|.....+++ .+++|- -.|.+.+|..+.+ ....+.|
T Consensus 122 VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~ieg 196 (1630)
T 1xi4_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEG 196 (1630)
T ss_pred EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhH
Confidence 89999999999753322 22223 456777777777 444443 3588899988764 4455667
Q ss_pred ccceEEEEEECCC----EEEE-ec---CCCcEEEEeCCCC---eE------EEEEccc---cccEEEEEEc--CCEEEEE
Q 013881 272 HSLAVVSLVVGAN----KLYS-GS---MDNSIRVWNLETL---QC------IQTLTEH---TSVVMSLLCW--DQFLLSC 329 (434)
Q Consensus 272 h~~~v~~l~~~~~----~l~s-~s---~dg~i~vwd~~~~---~~------~~~~~~~---~~~v~~l~~~--~~~l~s~ 329 (434)
|...-..+...++ .+++ +. ..+.++|-++... .. +..+... ..--.++..+ -+.+...
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 7666555555432 2222 21 1368888888542 11 1111111 1222344444 4577788
Q ss_pred eCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc
Q 013881 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER 393 (434)
Q Consensus 330 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 393 (434)
+.-|.|.+||+.++..+..-.-... .+...+... ..++ +++-...|.|.-..+.....+
T Consensus 277 tk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~-~~~g--~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHE-ATAG--IIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ecCceEEEEecccchhhhhccccCC--ceEEeccCC-CCCc--eEEEcCCceEEEEEEccchhh
Confidence 8999999999999876654432222 233332221 1122 333446677666666554433
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.20 E-value=0.058 Score=48.08 Aligned_cols=182 Identities=7% Similarity=0.039 Sum_probs=93.8
Q ss_pred EEEEEeCC----CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC------CcEEEEeCCCCeEEEE--
Q 013881 241 LLFAGTQD----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLETLQCIQT-- 308 (434)
Q Consensus 241 ~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~-- 308 (434)
+++.|+.+ ..+.+||+.+.. +..+..+.........+..++..++.|+.+ ..+.+||+.+.+-...
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDS--WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTE--EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCe--EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 66666654 567888877652 222222222222223344566677777755 4689999988654332
Q ss_pred EccccccEEEEEEcCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC
Q 013881 309 LTEHTSVVMSLLCWDQFLLSCSL---------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (434)
Q Consensus 309 ~~~~~~~v~~l~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 379 (434)
+......-.++...+..++.|+. -..+.+||+.+..-. .+..........++... ++++++.|+.+
T Consensus 136 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~----~~~i~v~GG~~ 210 (306)
T 3ii7_A 136 MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIEARKNHGLVFV----KDKIFAVGGQN 210 (306)
T ss_dssp CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE----TTEEEEECCEE
T ss_pred CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccchhhcceEEEE----CCEEEEEeCCC
Confidence 11111222334445666666653 345889998765322 22111111111111111 23367777643
Q ss_pred -----CeEEEEeCCCCc--ccccccc-cCcEEEEEecCCc-EEEEeCCC-----CCEEEEEccCCc
Q 013881 380 -----NSVRFYDLPSFA--ERGKIFA-KQEIRAIQLGPGG-LFFTGDGT-----GQVRVWQWCNGP 431 (434)
Q Consensus 380 -----g~i~iwd~~~~~--~~~~~~~-~~~v~~~~~spdg-~l~s~~~d-----g~i~iwd~~~g~ 431 (434)
..+.+||+.+.+ .+..+.. .....++.+ ++ +++.|+.+ ..+.+||..+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 468899988753 2222222 122233333 55 77777744 468888887754
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.17 E-value=0.23 Score=49.30 Aligned_cols=221 Identities=9% Similarity=-0.030 Sum_probs=128.8
Q ss_pred CEEEEEcCCcEEEEECCCCceEEe--cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeecCccceE
Q 013881 202 PWIFIGVTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (434)
Q Consensus 202 ~~l~~~~~~~i~~w~~~~~~~~~~--~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 276 (434)
.+|+.+....|+..++++...... ......+..++|++. ++++-..++.|..+++.... ....+.......
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~v~~~g~~~P 82 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEHVVEFGLDYP 82 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCC
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEEEEeCCCCCc
Confidence 455556667777777776543221 123456889999875 45555677889999887542 111222111233
Q ss_pred EEEEE--CCC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCceEEE
Q 013881 277 VSLVV--GAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATDSGNLEVT 349 (434)
Q Consensus 277 ~~l~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~~~~ 349 (434)
..+++ .++ +.++-...+.|.+.++........+...-.....|+++ ..+|..... .+.|...++...... .+
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l 161 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL 161 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE
Confidence 44555 344 45555667899999987543322232333455788887 345555542 467777777544332 22
Q ss_pred eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
.. .-.....+++.+. ++++.++-...+.|..+|+.................+++..+.++++-...+.|...|..+
T Consensus 162 ~~--~~~~P~GlalD~~--~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 162 VP--NVGRANGLTIDYA--KRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EC--SCSSEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EC--CCCCcceEEEccc--cCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCC
Confidence 22 2234556666543 3335555556789999998764332111123445677776643666666788899888777
Q ss_pred Cc
Q 013881 430 GP 431 (434)
Q Consensus 430 g~ 431 (434)
|+
T Consensus 238 g~ 239 (628)
T 4a0p_A 238 GQ 239 (628)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 300
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.17 E-value=0.11 Score=46.38 Aligned_cols=213 Identities=8% Similarity=0.016 Sum_probs=111.3
Q ss_pred CeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEEC-----C------CcEEEEECCCCceEEEEecCCc---e
Q 013881 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----D------ETVRVWDCASGQCAGVINLGGE---V 194 (434)
Q Consensus 129 ~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~-----d------g~v~iwd~~~~~~~~~~~~~~~---~ 194 (434)
..+.+||..++.=....+..........+...++++++.|+. . ..+.+||..+.+-...-....+ .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 678999998872122333222122222223347788888873 1 1277889888764332222211 1
Q ss_pred EEEEeCCCEEEEEc-C--------CcEEEEECCCCceEEecC---CCCcEEEEEEeCCEEEEEeC-C-----CcEEEEEc
Q 013881 195 GCMISEGPWIFIGV-T--------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQ-D-----GAILAWKF 256 (434)
Q Consensus 195 ~~~~~~~~~l~~~~-~--------~~i~~w~~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~-d-----g~i~vwd~ 256 (434)
.....++.+.+.|. + +.+.++|+.+.+-..+.. .......+.....+++.|+. + ..+.+||+
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 22233555555543 1 368899998876543322 11222233333336666665 2 46888888
Q ss_pred CCCCCccccceeecCccceEEEEEECCCEEEEecCCC-----cEEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEE
Q 013881 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN-----SIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSC 329 (434)
Q Consensus 257 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~ 329 (434)
.+.. +..+..+.........+..++..++.|+.++ .+.+||+.+.+-... +........++.+.+..++.|
T Consensus 173 ~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 173 KKFE--WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp TTTE--EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred CCCe--EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
Confidence 7652 2223222222222234455677777776654 588999988654332 111222223444556677777
Q ss_pred eCCC--------------cEEEEEcCCC
Q 013881 330 SLDK--------------TIKVWFATDS 343 (434)
Q Consensus 330 s~dg--------------~i~vwd~~~~ 343 (434)
+.++ .+.+||+.+.
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CccccCcCCccccccccCcEEEecCCCC
Confidence 6532 3567776654
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.16 E-value=0.18 Score=49.88 Aligned_cols=223 Identities=13% Similarity=0.035 Sum_probs=119.6
Q ss_pred EEEEEcCCcEEEEECCCCc--eEEecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEEcCCCCCccccceeecCccceEE
Q 013881 203 WIFIGVTNFVKAWNTQTNT--DLSLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 203 ~l~~~~~~~i~~w~~~~~~--~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
+++-.....|+..++.... ...+.........+++++. .|+ +-...+.|..+++.... .....+........
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~---~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE---SVQNVVVSGLLSPD 87 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC---ceEEEEeCCCCCcC
Confidence 4445556677777776542 2233344556788999874 444 44456788888886542 11122222223456
Q ss_pred EEEEC--CC-EEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCceEEEe
Q 013881 278 SLVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATDSGNLEVTY 350 (434)
Q Consensus 278 ~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~~~~~ 350 (434)
.++++ ++ .+++-...+.|.+.++........+...-.....|+++ ..+|..... .+.|...++..... ..+.
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~ 166 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII 166 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEE
Confidence 66664 44 45555677899999987544333332333445667775 345555543 35666666643322 2222
Q ss_pred eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc-ccCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
.. .......+++.+. ++++.++-...+.|..+++.......... .......|++..+..+++-...+.|...|..+
T Consensus 167 ~~-~~~~P~Glald~~--~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 167 NS-EIYWPNGLTLDYE--EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp CS-SCSSEEEEEEETT--TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred eC-CCCCCcEEEEEcc--CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence 21 2234556666544 33355555567789999987543332222 12223466776664666666788899999887
Q ss_pred Ccc
Q 013881 430 GPV 432 (434)
Q Consensus 430 g~~ 432 (434)
|+.
T Consensus 244 g~~ 246 (619)
T 3s94_A 244 GEG 246 (619)
T ss_dssp CCC
T ss_pred Ccc
Confidence 753
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.14 E-value=0.12 Score=46.09 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=71.9
Q ss_pred EEEEEeCC------CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecC---------CCcEEEEeCCCCeE
Q 013881 241 LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM---------DNSIRVWNLETLQC 305 (434)
Q Consensus 241 ~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~---------dg~i~vwd~~~~~~ 305 (434)
+++.|+.+ ..+.+||+.+.. +..+..+......-..+..++..++.|+. -..+.+||+.+.+-
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 55566554 457888877642 22222222212222334456666666653 34588999988653
Q ss_pred EEE--EccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeC
Q 013881 306 IQT--LTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (434)
Q Consensus 306 ~~~--~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (434)
... +......-.++...+..++.|+.+ ..+.+||+.+..-.. +...........+... ++.+++.|+.
T Consensus 182 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~----~~~i~v~GG~ 256 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPMPWKGVTVKCAAV----GSIVYVLAGF 256 (306)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCCSCCBSCCEEEEE----TTEEEEEECB
T ss_pred EECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCCCCCccceeEEEE----CCEEEEEeCc
Confidence 322 111122223344456666666643 468889987653211 1111111111111111 2347777774
Q ss_pred C-----CeEEEEeCCCC
Q 013881 379 D-----NSVRFYDLPSF 390 (434)
Q Consensus 379 d-----g~i~iwd~~~~ 390 (434)
+ ..+.+||+.+.
T Consensus 257 ~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 257 QGVGRLGHILEYNTETD 273 (306)
T ss_dssp CSSSBCCEEEEEETTTT
T ss_pred CCCeeeeeEEEEcCCCC
Confidence 4 56888888764
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.14 E-value=0.017 Score=52.14 Aligned_cols=141 Identities=11% Similarity=0.147 Sum_probs=89.5
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEc------CCE--EEEEe-C---CCcEEEEEcC-CCCceEEEe
Q 013881 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW------DQF--LLSCS-L---DKTIKVWFAT-DSGNLEVTY 350 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~------~~~--l~s~s-~---dg~i~vwd~~-~~~~~~~~~ 350 (434)
.+++.....+-+.+||+ +++.++.+.. +.+..+..- ++. ++.++ . +++|.+|++. ....+..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 45666677889999999 8899988864 344444433 321 33333 3 5789999884 222333331
Q ss_pred ee-----cCCccEEEEEeccCCC-CCcEEEEEeCCCeEEEEeCC-------CCcccccccccCcEEEEEecCCc-EEEEe
Q 013881 351 TH-----NEEHGVLALCGMPDSE-GKPVLLCSCNDNSVRFYDLP-------SFAERGKIFAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 351 ~~-----~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~v~~~~~spdg-~l~s~ 416 (434)
.. ........+|...++. +..++++...+|.+..|++. +.+.+.++.....+..+...+.. .|+.+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence 10 1113344555533332 33468888889999999982 34566667677889999999877 99999
Q ss_pred CCCCCEEEEEc
Q 013881 417 DGTGQVRVWQW 427 (434)
Q Consensus 417 ~~dg~i~iwd~ 427 (434)
-++.-|..++.
T Consensus 198 eEd~GIw~~da 208 (355)
T 3amr_A 198 EEDEAIWKFSA 208 (355)
T ss_dssp ETTTEEEEEEC
T ss_pred cccceEEEEeC
Confidence 88865544443
No 304
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.18 Score=47.51 Aligned_cols=214 Identities=6% Similarity=-0.013 Sum_probs=108.0
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC--EEEEEeC-CC----cEEEEEcCCCCCccccceeecCccceEEEEEEC
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-DG----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG 282 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~ 282 (434)
+.|+.+|++++....+.........++++++ .|+++.. ++ .+.+++..... .....+.. ......++++
T Consensus 159 ~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~---~~~~~l~~-~~~p~giavd 234 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF---KVITELTK-GQNCNGAETH 234 (430)
T ss_dssp EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS---CSEEEEEE-CSSCCCEEEC
T ss_pred CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce---eeeeeecc-CCCceEEEEe
Confidence 3444555554444333344556778888877 4555544 22 23334432211 11111111 1123344554
Q ss_pred ---CCEEEEecCCCcEEEEeCCCCeEEEEEcc-ccccEEEEEEc--CCEE-EEEeCCCcEEEEEcCCC-Cc---eEEEee
Q 013881 283 ---ANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDS-GN---LEVTYT 351 (434)
Q Consensus 283 ---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~-~~---~~~~~~ 351 (434)
+.++++-..++.|..++...+........ .......++++ +++| ++-...+.|..++.... .. +..+..
T Consensus 235 p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag 314 (430)
T 3tc9_A 235 PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG 314 (430)
T ss_dssp TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEec
Confidence 34555556778999999987665322222 12335677887 6644 44456788999887532 11 122221
Q ss_pred ecCC-------------ccEE-EEEeccC-----CCCCcEEEEEeCCCeEEEEeCCCCcccccccc--------------
Q 013881 352 HNEE-------------HGVL-ALCGMPD-----SEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-------------- 398 (434)
Q Consensus 352 ~~~~-------------~~~~-~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------- 398 (434)
.... .... .++.... ..++.+.++-...+.|+.++. ++........
T Consensus 315 ~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~ 393 (430)
T 3tc9_A 315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLR 393 (430)
T ss_dssp CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETT
T ss_pred cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCch
Confidence 1000 0011 2222111 122334555455678888883 3432211110
Q ss_pred ----cCcEEEEEecC-Cc-EEEEeCCCCCEEEEEcc
Q 013881 399 ----KQEIRAIQLGP-GG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 399 ----~~~v~~~~~sp-dg-~l~s~~~dg~i~iwd~~ 428 (434)
-.....|+++| ++ ++++-..+..|+.++++
T Consensus 394 ~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 394 QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 12478999999 56 66666677888888764
No 305
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.13 E-value=0.11 Score=44.96 Aligned_cols=196 Identities=11% Similarity=0.098 Sum_probs=116.4
Q ss_pred EecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEcCCCCCccccceeec-CccceEEEEEECC--CEEEEecCCCcEEE
Q 013881 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGA--NKLYSGSMDNSIRV 297 (434)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~v 297 (434)
.+.+-...+..++++++ ++++...++.|...|.. + +.+..+. .-....-.|++.+ .++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g----~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G----DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C----CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C----CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 35566678999999976 55667788999999987 4 3333332 1123455666643 34455556788999
Q ss_pred EeCCCCeE---EEEEc------cccccEEEEEEc--CCEEEEEeCCCcEEEEEcCC---CCceEEEee-----ecCCccE
Q 013881 298 WNLETLQC---IQTLT------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD---SGNLEVTYT-----HNEEHGV 358 (434)
Q Consensus 298 wd~~~~~~---~~~~~------~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~-----~~~~~~~ 358 (434)
+++..... +.... ......-.++++ ++.|+++.+.....||.+.. ...+..... .......
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765432 22221 123345788888 45677777665666665541 111222211 0011234
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccccc----------cCcEEEEEecCCcEEEEeCCCCCEEEEEc
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA----------KQEIRAIQLGPGGLFFTGDGTGQVRVWQW 427 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~v~~~~~spdg~l~s~~~dg~i~iwd~ 427 (434)
.++++.|. .+.+++.+.....|.++|... +.+..+.- ......|+|.++|.|...++-..++++.-
T Consensus 176 S~l~~dp~--tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQ--KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETT--TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred eeEEEcCC--CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 56776654 345777788888999999774 34433321 13678999999993333466665555543
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.13 Score=45.60 Aligned_cols=211 Identities=10% Similarity=0.118 Sum_probs=110.9
Q ss_pred CeEEEEeCCCCc-eEEEEecCccccEEEEEccCCCCEEEEEECC-----CcEEEEECCCCc---eEEEEecCC---ceEE
Q 013881 129 KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQ---CAGVINLGG---EVGC 196 (434)
Q Consensus 129 ~~i~vwd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~~---~~~~ 196 (434)
..+.++|..+.. ..+..+......-..+. .++.+++.|+.+ ..+.+||+.+.+ -...-.... ...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368888887651 12222222111112222 256677777755 468999998876 333322221 1223
Q ss_pred EEeCCCEEEEEc------CCcEEEEECCCCceEEec---CCCCcEEEEEEeCCEEEEEeCC-----CcEEEEEcCCCCCc
Q 013881 197 MISEGPWIFIGV------TNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNC 262 (434)
Q Consensus 197 ~~~~~~~l~~~~------~~~i~~w~~~~~~~~~~~---~~~~~v~~l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~ 262 (434)
...++.+++.+. ...+.++|+.+.+...+. ........+.+...+++.|+.+ ..+.+||+.+..
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 186 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH-- 186 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence 334555555543 236889999887754322 1112222233333366666654 458888887652
Q ss_pred cccceeecCccceEEEEEECCCEEEEecCC-----CcEEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEEeCC---
Q 013881 263 FEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLD--- 332 (434)
Q Consensus 263 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~d--- 332 (434)
+..+..+.........+..++..++.|+.+ ..+.+||+.+.+-... +........++...+..++.|+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS 266 (301)
T ss_dssp EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred EEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCc
Confidence 222222222222223444566677777664 4689999988654332 211122223444456666777655
Q ss_pred --CcEEEEEcCCC
Q 013881 333 --KTIKVWFATDS 343 (434)
Q Consensus 333 --g~i~vwd~~~~ 343 (434)
..|.+||+.+.
T Consensus 267 ~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 267 LLSSIECYDPIID 279 (301)
T ss_dssp BEEEEEEEETTTT
T ss_pred ccccEEEEcCCCC
Confidence 35778887654
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.12 E-value=0.051 Score=48.36 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=107.8
Q ss_pred CcEEEEECCCCceEEecCC---CCcEEEEEEeCCEEEEEeCC-----CcEEEEEcCCCCCccccceeecCccceEEEEEE
Q 013881 210 NFVKAWNTQTNTDLSLSGP---VGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~---~~~v~~l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 281 (434)
..+..+|+.+.+...+... ...-..+.....+++.|+.+ ..+.+||..+.. +..+..+......-....+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCccccceEEEEE
Confidence 4678888888765543221 11112233333366677654 357888877642 2222222222222233445
Q ss_pred CCCEEEEecCCC-----cEEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEEeCC-------CcEEEEEcCCCCceE
Q 013881 282 GANKLYSGSMDN-----SIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLD-------KTIKVWFATDSGNLE 347 (434)
Q Consensus 282 ~~~~l~s~s~dg-----~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~ 347 (434)
++..++.|+.++ .+.+||+.+.+-... +........++.+.+..++.|+.+ ..+.+||+.+..-..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 666677776553 578899887654332 211122223344456666666542 458889987653222
Q ss_pred EEeeecCCccEEEEEeccCCCCCcEEEEEeCC-----CeEEEEeCCCCc--ccccccccCcEEEEEecCCc-EEEEeCCC
Q 013881 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSFA--ERGKIFAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
...........++... ++.+++.|+.+ ..+.+||+.+.+ .+..+.....-.+++.. ++ +++.|+.+
T Consensus 188 -~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~ 261 (302)
T 2xn4_A 188 -IAEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD 261 (302)
T ss_dssp -ECCCSSCCBSCEEEEE----TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred -CCCCccccccccEEEE----CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence 1111111111111111 23477777654 468899987743 22222211111112222 55 77777655
Q ss_pred C-----CEEEEEccCCc
Q 013881 420 G-----QVRVWQWCNGP 431 (434)
Q Consensus 420 g-----~i~iwd~~~g~ 431 (434)
+ .+.+||..+.+
T Consensus 262 ~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 3 48999987754
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.10 E-value=0.095 Score=46.76 Aligned_cols=223 Identities=12% Similarity=0.104 Sum_probs=112.7
Q ss_pred CCCEEEEEECC----CcEEEEECCCCceEEEEecCC---ceEEEEeCCCEEEEEcC----------CcEEEEECCCCceE
Q 013881 161 GSDKLYSGSKD----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGVT----------NFVKAWNTQTNTDL 223 (434)
Q Consensus 161 ~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~----------~~i~~w~~~~~~~~ 223 (434)
++.+++.|+.+ ..+.++|..+.+-...-..+. .......++.+++.|.. +.+.++|+.+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 55666666632 358888888775433222211 11222335555544432 46888999887755
Q ss_pred EecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC---
Q 013881 224 SLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD--- 292 (434)
Q Consensus 224 ~~~~---~~~~v~~l~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--- 292 (434)
.+.. .......+.+...+++.|+.+ ..+.+||+.+.. +..+..+......-..+..++..++.|+.+
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 181 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEECCEEEEEeCCCCCC
Confidence 3322 122222333333366666543 457888887642 222222222222223344466667777654
Q ss_pred --CcEEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 293 --NSIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 293 --g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
..+.+||+.+.+-... +......-.++.+.+..++.|+.+ ..+.+||+.+..-.. +..........++..
T Consensus 182 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~ 260 (308)
T 1zgk_A 182 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGITV 260 (308)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE
T ss_pred cCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEEEE
Confidence 4689999887653321 111122223444456667777654 568999987653221 111111111111111
Q ss_pred ccCCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 013881 364 MPDSEGKPVLLCSCND-----NSVRFYDLPSF 390 (434)
Q Consensus 364 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 390 (434)
. ++.+++.|+.+ ..|.+||+.+.
T Consensus 261 ~----~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 261 H----QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp E----TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred E----CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1 23467777643 45778887764
No 309
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.07 E-value=0.15 Score=45.42 Aligned_cols=214 Identities=9% Similarity=-0.015 Sum_probs=118.2
Q ss_pred eEEEEEeC-CcEEEec-CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCC--cEEEEECCCCceEEE
Q 013881 112 ILCRNWVQ-GNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGV 187 (434)
Q Consensus 112 i~c~~~~~-~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~ 187 (434)
...++|.+ +.++... ..+.|..||..... ...+. -......|++.++++++++..... .|..+|..+++....
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 44577754 3455554 67899999987652 22222 234688999999999766654432 477778888876544
Q ss_pred EecCC--ceEEE-EeCCCEEEE-E-cCCcEEEEECCCCc--eEEe---------cCCCCcEEEEEEeCC-EEEEEeCCCc
Q 013881 188 INLGG--EVGCM-ISEGPWIFI-G-VTNFVKAWNTQTNT--DLSL---------SGPVGQVYAMAVGND-LLFAGTQDGA 250 (434)
Q Consensus 188 ~~~~~--~~~~~-~~~~~~l~~-~-~~~~i~~w~~~~~~--~~~~---------~~~~~~v~~l~~~~~-~l~~g~~dg~ 250 (434)
..... ....+ ...+..+++ . ..+.|..+|..++. .... .........+..... ++++-...+.
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence 43321 11122 133334443 3 36788888887642 2111 111224455644444 5555567789
Q ss_pred EEEEEcCCCCCccccceeecCccceEEEEEE--CCCEEEEecCCCcEEEEeCCCCeEEE--EEccccccEEEEEEc----
Q 013881 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVVMSLLCW---- 322 (434)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~~---- 322 (434)
|..+++..... ......+.. ......+++ +++++++....+.|.++|.. ++... .+...-....++++.
T Consensus 191 I~~~~~~~~g~-~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~ 267 (306)
T 2p4o_A 191 LLRIPVDSTDK-PGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEG 267 (306)
T ss_dssp EEEEEBCTTSC-BCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTT
T ss_pred EEEEEeCCCCC-CCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccC
Confidence 99999875211 111111110 012233444 46666666667899999975 55432 233333557888875
Q ss_pred -CCEEEEEeC
Q 013881 323 -DQFLLSCSL 331 (434)
Q Consensus 323 -~~~l~s~s~ 331 (434)
++.|++++.
T Consensus 268 d~~~LyVt~~ 277 (306)
T 2p4o_A 268 DCTAIYVVTN 277 (306)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEECC
Confidence 245555544
No 310
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.05 E-value=0.15 Score=44.98 Aligned_cols=217 Identities=21% Similarity=0.171 Sum_probs=124.8
Q ss_pred eEEEEeCCCEEEEEcCCcEEEEECCCCceE-EecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEcCCCCCccccceeecC
Q 013881 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKG 271 (434)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (434)
+..+.......++-.++.|..|-....-++ ........|..++.... .++. . ||.|+.|-.....+.-.+..
T Consensus 26 i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~---- 99 (282)
T 3qhy_B 26 VDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAE---- 99 (282)
T ss_dssp CCEEEECSSEEEEEETTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGG----
T ss_pred CcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcc----
Confidence 444444333333323888888875543322 11122346788888777 4444 5 99999998765432111111
Q ss_pred ccceEEEEEECCCEEEEecCCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 013881 272 HSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (434)
Q Consensus 272 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 351 (434)
-...|..++....+.+.-. ||.|+.|-....-.+-........|..++.-....+.-. ||.|..|-......+....
T Consensus 100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~- 176 (282)
T 3qhy_B 100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA- 176 (282)
T ss_dssp GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-
T ss_pred cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce-
Confidence 1346888888877766667 999999976542211111123456778877766555556 8999999776544432111
Q ss_pred ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-ccccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-IFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
.....+..++.-... .++. .||.|+.|-....-.+.. ......|..|+......++.. ||.|+.|-..
T Consensus 177 -~~~~~v~~i~~G~~h----s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 177 -EAQSGVDDVAGGIFH----SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp -GGGSSEEEEEECSSE----EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred -ecCCCeEEEEecCCE----EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 112346666543222 3444 599999998765433322 122345777776655533333 8888888544
No 311
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.99 E-value=0.15 Score=45.58 Aligned_cols=174 Identities=11% Similarity=0.180 Sum_probs=92.8
Q ss_pred EEEEECCCcEEEEECCCCceEEEEecCC-----ceEEEEeCCCEEEEEc-----CC-------cEEEEECCCCceEEecC
Q 013881 165 LYSGSKDETVRVWDCASGQCAGVINLGG-----EVGCMISEGPWIFIGV-----TN-------FVKAWNTQTNTDLSLSG 227 (434)
Q Consensus 165 l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~-----~~-------~i~~w~~~~~~~~~~~~ 227 (434)
++.|+ ..+.+||..+++-.. ..... ....+..++.+++.|. ++ .+..||..+.+-..+..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 34444 568999999887543 33221 1222233555555543 11 37788998877554322
Q ss_pred CCCcE--EEEEEeCC-EEEEEeCC--------CcEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecC-C---
Q 013881 228 PVGQV--YAMAVGND-LLFAGTQD--------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM-D--- 292 (434)
Q Consensus 228 ~~~~v--~~l~~~~~-~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-d--- 292 (434)
....- .+++...+ +++.|+.+ ..+.+||+.+.. ++.+..+......-..+..++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 11111 12223344 66666632 458888887652 23333332222223344466777777765 2
Q ss_pred --CcEEEEeCCCCeEEE--EEccccccEEEEEEcCCEEEEEeCCC-----cEEEEEcCCC
Q 013881 293 --NSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLDK-----TIKVWFATDS 343 (434)
Q Consensus 293 --g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~ 343 (434)
..+.+||+.+.+-.. .+......-.++...+..++.|+.++ .+.+||+.+.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 468999998764322 12212222234445577777777654 4888888765
No 312
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.037 Score=50.10 Aligned_cols=193 Identities=15% Similarity=0.079 Sum_probs=100.0
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEEecC--CceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC
Q 013881 163 DKLYSGSKDETVRVWDCASGQCAGVINLG--GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (434)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~ 240 (434)
.+++.++.||.|.-.|..+|+.+-.++.. .+.. ........ ...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~----------------------------~~~~~~~~------~~~ 56 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI----------------------------EIQEPSRL------ETY 56 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE----------------------------ECCCSCTT------TSS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE----------------------------EecCCccc------cCC
Confidence 46888899999999999998877665543 1110 00101000 111
Q ss_pred EEE-EE-eCCCcEEEEEcCCCCCccccceeecC--ccceEEE---EEE-------CCCEEEEecCCCcEEEEeCCCCeEE
Q 013881 241 LLF-AG-TQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVS---LVV-------GANKLYSGSMDNSIRVWNLETLQCI 306 (434)
Q Consensus 241 ~l~-~g-~~dg~i~vwd~~~~~~~~~~~~~~~~--h~~~v~~---l~~-------~~~~l~s~s~dg~i~vwd~~~~~~~ 306 (434)
.++ .. +.||.|..++..++...+ ...... ...++.. ... .++.+++|+.+|.+...|+++|+.+
T Consensus 57 ~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 57 ETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp EEEEECCSTTTEEEEEETTTEEEEE--EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred cEEEEEECCCCEEEEEECCCCcEEe--eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 233 32 578888888876652211 011100 1112221 011 4668999999999999999999999
Q ss_pred EEEccccc-------cEEEEE-------EcCCEEEEEeCCCcEEEEEcCCCCceEEEe-eecCCccEE-EE-EeccCCCC
Q 013881 307 QTLTEHTS-------VVMSLL-------CWDQFLLSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVL-AL-CGMPDSEG 369 (434)
Q Consensus 307 ~~~~~~~~-------~v~~l~-------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~ 369 (434)
.++..... ...+.. ..++.++.+..+..+.+.+ +++. ...+. .......+. .+ .-.....+
T Consensus 135 W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D 212 (339)
T 2be1_A 135 SAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKD 212 (339)
T ss_dssp EEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSS
T ss_pred EEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccC
Confidence 99864321 011111 1245677777777777666 3332 11110 000000000 00 00000111
Q ss_pred CcEEEEEeCCCeEEEEeCCCCcccc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERG 394 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~ 394 (434)
+.+ +.++.||.|..+|..+++.+.
T Consensus 213 g~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 213 GMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CcE-EEECCCCEEEEEECCCCcEEE
Confidence 223 457889999999998888776
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.98 E-value=0.084 Score=47.14 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=107.6
Q ss_pred CcEEEEECCCCceEEecCC---CCcEEEEEEeCCEEEEEeC----C-----CcEEEEEcCCCCCccccceeecCccceEE
Q 013881 210 NFVKAWNTQTNTDLSLSGP---VGQVYAMAVGNDLLFAGTQ----D-----GAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~---~~~v~~l~~~~~~l~~g~~----d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 277 (434)
..+.++|..+.+...+... ......+.....+++.|+. + ..+.+||+.+.. +..+..+........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe--EeECCCCCcCccccE
Confidence 4688889888776544221 1111222333336666665 2 467888877652 222222222222223
Q ss_pred EEEECCCEEEEecCC-----CcEEEEeCCCCeEEEE--EccccccEEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCc
Q 013881 278 SLVVGANKLYSGSMD-----NSIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGN 345 (434)
Q Consensus 278 ~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~ 345 (434)
....++..++.|+.+ ..+.+||+.+.+-... +......-.++.+.+..++.|+.+ ..+.+||+.+..-
T Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 344566666776643 4688999987653322 221222223344456666666654 4588898876532
Q ss_pred eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC-----CeEEEEeCCCCcc--cccccccCcEEEEEecCCc-EEEEeC
Q 013881 346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSFAE--RGKIFAKQEIRAIQLGPGG-LFFTGD 417 (434)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~v~~~~~spdg-~l~s~~ 417 (434)
.. ...........++... ++.+++.|+.+ ..+.+||+.+.+- +..+.....-.+++.. ++ +++.|+
T Consensus 197 ~~-~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 270 (308)
T 1zgk_A 197 RM-ITAMNTIRSGAGVCVL----HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGG 270 (308)
T ss_dssp EE-CCCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred ee-CCCCCCccccceEEEE----CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcC
Confidence 21 1111111111111111 23477777654 5689999887532 2222211111122222 45 677776
Q ss_pred CC-----CCEEEEEccCCc
Q 013881 418 GT-----GQVRVWQWCNGP 431 (434)
Q Consensus 418 ~d-----g~i~iwd~~~g~ 431 (434)
.+ ..+.+||..+.+
T Consensus 271 ~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSCBCCEEEEEETTTTE
T ss_pred cCCCcccceEEEEcCCCCE
Confidence 43 457888887654
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.88 E-value=0.42 Score=47.42 Aligned_cols=309 Identities=11% Similarity=0.053 Sum_probs=167.9
Q ss_pred ceEEEEEeC--CcEEEe-cCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEE-EEECCCcEEEEECCCCceEE
Q 013881 111 DILCRNWVQ--GNCMYG-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAG 186 (434)
Q Consensus 111 ~i~c~~~~~--~~~~~g-~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~ 186 (434)
....++|.. +.++.. ..++.|+.+++... .....+..-......|++.+.+..|+ +-...+.|.+.++.......
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 345677753 334433 35788988888754 33333332334567889987655554 44556889999987654333
Q ss_pred EEe-cCCceEEEE--eCCCEEEEEc---CCcEEEEECCCCceEEecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEcC
Q 013881 187 VIN-LGGEVGCMI--SEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFN 257 (434)
Q Consensus 187 ~~~-~~~~~~~~~--~~~~~l~~~~---~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~vwd~~ 257 (434)
.+. .-.....+. +....|+... ...|...++.......+.........|+++++ . .++-...+.|..+|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 332 222334443 3355666654 45788888877766555455677889999975 4 4444567889999987
Q ss_pred CCCCccccceeecCccceEEEEEECCCEEEEec-CCCcEEEEeCCCCeEEEEEccccc----------------------
Q 013881 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS-MDNSIRVWNLETLQCIQTLTEHTS---------------------- 314 (434)
Q Consensus 258 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~---------------------- 314 (434)
.... + .+.........+++.++.++... ..+.|...|..+++....+.....
T Consensus 197 G~~~--~---v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ 271 (628)
T 4a0p_A 197 GLNR--E---VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASS 271 (628)
T ss_dssp SCSC--E---EEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTT
T ss_pred CCce--E---EeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccC
Confidence 6432 1 22222334457777666655544 578899999776654333321100
Q ss_pred --cE--EEEEEc-C-----------------------CEEEEEeCCCcEEEEEcCCCCceEEEeeecCCccEEEEEeccC
Q 013881 315 --VV--MSLLCW-D-----------------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (434)
Q Consensus 315 --~v--~~l~~~-~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (434)
.. .|+... + .+|+.+ ....|+-..+..............-..+.++.+.+.
T Consensus 272 ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~ 350 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPL 350 (628)
T ss_dssp GGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETT
T ss_pred CCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecC
Confidence 00 111111 1 111111 122333333322111111111122234556666543
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCccccccc-------ccCcEEEEEecCCc--EEEEeCCCCCEEEEEcc
Q 013881 367 SEGKPVLLCSCNDNSVRFYDLPSFAERGKIF-------AKQEIRAIQLGPGG--LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 367 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~spdg--~l~s~~~dg~i~iwd~~ 428 (434)
++.++.+=...+.|+.+++........+. ....+..|++...+ ++++-+..+.|.+.++.
T Consensus 351 --~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 351 --DKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp --TTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred --CCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 33344544456788888776432211111 13457889998875 55677777888888875
No 315
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.78 E-value=0.3 Score=44.41 Aligned_cols=222 Identities=9% Similarity=0.077 Sum_probs=111.6
Q ss_pred CCCeEEEEeCCC---CceEEEEec-CccccEEEEEccCCCCEEEEEEC-C---------CcEEEEECCCCceEEEEecC-
Q 013881 127 KCKFLHSWTVGD---GFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSK-D---------ETVRVWDCASGQCAGVINLG- 191 (434)
Q Consensus 127 ~d~~i~vwd~~~---~~~~~~~l~-~h~~~V~~l~~s~~~~~l~s~s~-d---------g~v~iwd~~~~~~~~~~~~~- 191 (434)
....+.++|..+ ..+.+..+. .....-.++.+ ++++++.|+. + ..+.+||+.+.+-...-...
T Consensus 29 ~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p 106 (357)
T 2uvk_A 29 AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP 106 (357)
T ss_dssp GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCS
T ss_pred CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCC
Confidence 345788999863 233333333 11112222222 5666777665 2 46889999887533322221
Q ss_pred C---ceEEEEeCCCEEEEEc-C---------------------------------------CcEEEEECCCCceEEecCC
Q 013881 192 G---EVGCMISEGPWIFIGV-T---------------------------------------NFVKAWNTQTNTDLSLSGP 228 (434)
Q Consensus 192 ~---~~~~~~~~~~~l~~~~-~---------------------------------------~~i~~w~~~~~~~~~~~~~ 228 (434)
. ...++..++.+.+.+. + ..+.+||+.+.+-..+...
T Consensus 107 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 186 (357)
T 2uvk_A 107 MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES 186 (357)
T ss_dssp SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC
T ss_pred cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC
Confidence 1 1223345666555553 2 5788999988775533211
Q ss_pred --CCcE-EEEEEeCC-EEEEEeC------CCcEEEEEcCCCCCccccceeecCcc--ceEEEEEECCCEEEEecCC----
Q 013881 229 --VGQV-YAMAVGND-LLFAGTQ------DGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMD---- 292 (434)
Q Consensus 229 --~~~v-~~l~~~~~-~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~d---- 292 (434)
...- .+++...+ +++.|+. ...+.+||++.....+..+..+.... .....+..++..++.|+.+
T Consensus 187 p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~ 266 (357)
T 2uvk_A 187 PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS 266 (357)
T ss_dssp SSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTH
T ss_pred CCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCC
Confidence 1111 33444455 5666653 34577788743333333333332111 1223445566667777632
Q ss_pred ------------------CcEEEEeCCCCe--EEEEEccccccEEEEEEcCCEEEEEeCCC------cEEEEEcCCCCce
Q 013881 293 ------------------NSIRVWNLETLQ--CIQTLTEHTSVVMSLLCWDQFLLSCSLDK------TIKVWFATDSGNL 346 (434)
Q Consensus 293 ------------------g~i~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~ 346 (434)
..+.+||+.+.+ .+..+......-.++.+.++.++.|+.++ .|.++++++.+..
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 267 RENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp HHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred cccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 257789988654 33333333333344556677888888653 3555677766655
Q ss_pred EEEe
Q 013881 347 EVTY 350 (434)
Q Consensus 347 ~~~~ 350 (434)
....
T Consensus 347 ~~~~ 350 (357)
T 2uvk_A 347 VQNL 350 (357)
T ss_dssp EEC-
T ss_pred eeec
Confidence 4433
No 316
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.38 Score=45.27 Aligned_cols=143 Identities=8% Similarity=-0.007 Sum_probs=84.0
Q ss_pred EEEEEeC---CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC-C----cEEEEECCCCce
Q 013881 113 LCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E----TVRVWDCASGQC 184 (434)
Q Consensus 113 ~c~~~~~---~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d-g----~v~iwd~~~~~~ 184 (434)
..+++.+ +.++.+...+.|+.+|..++ +... +.........|+|++++++|+.+... + .+.+.+. .+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTT-EEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCC-EEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 4567763 34555554488999999876 4333 33345668899999999966666542 2 2333443 3322
Q ss_pred E--EEEe-cCCce-EEEEe-CCCEEEEE-cCCcEEEEECCCCceEEe--cCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 013881 185 A--GVIN-LGGEV-GCMIS-EGPWIFIG-VTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND---LLFAGTQDGAILA 253 (434)
Q Consensus 185 ~--~~~~-~~~~~-~~~~~-~~~~l~~~-~~~~i~~w~~~~~~~~~~--~~~~~~v~~l~~~~~---~l~~g~~dg~i~v 253 (434)
. ..+. ...+. ..+.+ ++.+.++. ..+.|..++..++....+ .........++++++ ++++-...+.|..
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 2 2222 12111 22333 34444444 356899999987765222 222245678999987 4445556788999
Q ss_pred EEcCC
Q 013881 254 WKFNV 258 (434)
Q Consensus 254 wd~~~ 258 (434)
++...
T Consensus 297 ~~~d~ 301 (430)
T 3tc9_A 297 SDYDW 301 (430)
T ss_dssp EEEET
T ss_pred EeCCc
Confidence 88764
No 317
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.00077 Score=46.40 Aligned_cols=32 Identities=25% Similarity=0.623 Sum_probs=26.3
Q ss_pred CccccccceeeeeccCccCC-CCCCcccccCCC
Q 013881 29 STADTRQKVCNYWRAGKCNR-FPCPYLHRELPL 60 (434)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~~c~~l~~~~p~ 60 (434)
..+..+..+|.||+.|+|.+ ..|+|.|...+.
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~ 36 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT 36 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCccccccC
Confidence 44567789999999999998 679999987553
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.70 E-value=0.31 Score=43.51 Aligned_cols=93 Identities=6% Similarity=0.078 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecC------CCcEEEEeCCCCeEEEE--EccccccEEEEEE
Q 013881 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM------DNSIRVWNLETLQCIQT--LTEHTSVVMSLLC 321 (434)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~ 321 (434)
.+.+||+.+.. +..+..+......-..+..++..++.|+. -..+.+||+.+.+-... +........++..
T Consensus 128 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 205 (318)
T 2woz_A 128 SVLCYDPVAAK--WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH 205 (318)
T ss_dssp EEEEEETTTTE--EEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred eEEEEeCCCCC--EeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE
Confidence 46777776542 22222222111112233356666666664 24589999988654322 2111222234445
Q ss_pred cCCEEEEEeCC-----CcEEEEEcCCCC
Q 013881 322 WDQFLLSCSLD-----KTIKVWFATDSG 344 (434)
Q Consensus 322 ~~~~l~s~s~d-----g~i~vwd~~~~~ 344 (434)
.+..++.|+.+ ..+.+||+.+..
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 56677777653 347788887654
No 319
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.68 E-value=0.00067 Score=45.89 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=23.9
Q ss_pred ccccceeeeeccCccCC-CCCCcccccCC
Q 013881 32 DTRQKVCNYWRAGKCNR-FPCPYLHRELP 59 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-~~c~~l~~~~p 59 (434)
..+.+||.||++|.|.+ ..|+|.|...+
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 45678999999999999 67999998644
No 320
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.65 E-value=0.45 Score=44.76 Aligned_cols=214 Identities=9% Similarity=-0.002 Sum_probs=107.0
Q ss_pred CcEEEEECCCCceEEecCCCCcEEEEEEeCC-EEEEEeCCC-----cEEEEEcCCCCCccccceeecCccceEEEEEEC-
Q 013881 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG- 282 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~- 282 (434)
+.|+.++..++....+.........++++++ .|+++...+ .+...+.... +.....+. .......++++
T Consensus 162 ~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~---~~~~~~~~-~~~~P~giavd~ 237 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG---FTERLSLC-NARGAKTCAVHP 237 (433)
T ss_dssp SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT---TCCEEEEE-ECSSBCCCEECT
T ss_pred CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC---eecccccc-ccCCCCEEEEeC
Confidence 4445555544444444444556778888777 333333211 1222322211 01001111 11222344554
Q ss_pred --CCEEEEecCCCcEEEEeCCCCeEEEEEcc-c-cccEEEEEEc--CCEEE-EEeCCCcEEEEEcCCC-Cc---eEEEee
Q 013881 283 --ANKLYSGSMDNSIRVWNLETLQCIQTLTE-H-TSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDS-GN---LEVTYT 351 (434)
Q Consensus 283 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~-~~---~~~~~~ 351 (434)
+.++++-..++.|+.+|..+++....+.. . ...-..++++ +++|. +-...+.|+.++.... .. ...+..
T Consensus 238 ~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 238 QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 33444555678899999987766333221 1 1222457776 56444 4455788999886532 11 112222
Q ss_pred ecC-------------CccEEEEEeccC------CCCCcEEEEEeCCCeEEEEeCCCCccccccc---------------
Q 013881 352 HNE-------------EHGVLALCGMPD------SEGKPVLLCSCNDNSVRFYDLPSFAERGKIF--------------- 397 (434)
Q Consensus 352 ~~~-------------~~~~~~~~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------- 397 (434)
... -.....+++..+ ..++.++++-...+.|+.++. ++.......
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~ 396 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELR 396 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETT
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccc
Confidence 100 012334555211 233335555556778888885 343221110
Q ss_pred ---ccCcEEEEEec-CCc-EEEEeCCCCCEEEEEcc
Q 013881 398 ---AKQEIRAIQLG-PGG-LFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 398 ---~~~~v~~~~~s-pdg-~l~s~~~dg~i~iwd~~ 428 (434)
.-.....|+++ ++| ++++=..+..|+.++++
T Consensus 397 ~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 397 SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 01347889999 677 66666677888888775
No 321
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.52 E-value=0.55 Score=44.18 Aligned_cols=143 Identities=9% Similarity=0.060 Sum_probs=79.8
Q ss_pred EEEEEeC----CcEEEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECCC----c-EEEEECCCCc
Q 013881 113 LCRNWVQ----GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE----T-VRVWDCASGQ 183 (434)
Q Consensus 113 ~c~~~~~----~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg----~-v~iwd~~~~~ 183 (434)
..++|.+ +.++.+...+.|+.++..++ +... +.........|+|+++++ |+.+...+ . +...+...+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTT-EEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCC-EEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4677764 45666655589999999876 4443 444456689999999999 54444321 1 3333322211
Q ss_pred e-EEEE-ecCCce-EEEEe-CCCEEEEEc-CCcEEEEECCCCce-EEe--cCCCCcEEEEEEeCC---EEEEEeCCCcEE
Q 013881 184 C-AGVI-NLGGEV-GCMIS-EGPWIFIGV-TNFVKAWNTQTNTD-LSL--SGPVGQVYAMAVGND---LLFAGTQDGAIL 252 (434)
Q Consensus 184 ~-~~~~-~~~~~~-~~~~~-~~~~l~~~~-~~~i~~w~~~~~~~-~~~--~~~~~~v~~l~~~~~---~l~~g~~dg~i~ 252 (434)
. ...+ ....+. .++.+ .+.+.++.. .+.|..++..++.. ..+ .+....-..++++++ ++++-...+.|.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 1 0111 111111 12233 344443433 56899999886665 222 122223346999887 444555678899
Q ss_pred EEEcCC
Q 013881 253 AWKFNV 258 (434)
Q Consensus 253 vwd~~~ 258 (434)
.+++..
T Consensus 299 ~~~~d~ 304 (433)
T 4hw6_A 299 RVDYNR 304 (433)
T ss_dssp EEEBCT
T ss_pred EEeCCC
Confidence 988764
No 322
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.39 E-value=0.24 Score=44.36 Aligned_cols=149 Identities=9% Similarity=0.078 Sum_probs=89.0
Q ss_pred EEEEECC--CEEEEec-CCCcEEEEeCCCCeEEEE-Ecc----c--cccEEEEEE---c-CC-EEEEEe-----------
Q 013881 277 VSLVVGA--NKLYSGS-MDNSIRVWNLETLQCIQT-LTE----H--TSVVMSLLC---W-DQ-FLLSCS----------- 330 (434)
Q Consensus 277 ~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~-~~~----~--~~~v~~l~~---~-~~-~l~s~s----------- 330 (434)
.++.|+. ..|+.++ ..++|..||...+..... +.. . ...+..|.+ + .. ++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4567763 5555555 789999999976544333 221 1 113578888 4 33 444333
Q ss_pred --CCCcEEEEEcC---CCCceEEEeeec-----------CCccEEEEEeccCCCCCcEEEEEeCC-CeEEEEeCCCCccc
Q 013881 331 --LDKTIKVWFAT---DSGNLEVTYTHN-----------EEHGVLALCGMPDSEGKPVLLCSCND-NSVRFYDLPSFAER 393 (434)
Q Consensus 331 --~dg~i~vwd~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 393 (434)
.+..|..||+. +++.+....... .......++..+.+ +..++++.- +.|...+.... .+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G---naYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG---NSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS---CEEEEEEESSCEEEEECTTSC-CE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC---CEEEeCCCCCCeEEEEeCCCC-EE
Confidence 26779999998 665554443211 11235555554333 366667766 77777766543 22
Q ss_pred cccc-------ccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 394 GKIF-------AKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 394 ~~~~-------~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
..+. .....+.|+++|+| .|++....|.|..+|+.+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2111 12236789999999 777776699999999763
No 323
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.30 E-value=0.0074 Score=60.92 Aligned_cols=227 Identities=9% Similarity=0.046 Sum_probs=111.7
Q ss_pred EEecCCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEE-CCCcEEEEECCCC----ceEEEEecCCceEEE
Q 013881 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASG----QCAGVINLGGEVGCM 197 (434)
Q Consensus 123 ~~g~~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~----~~~~~~~~~~~~~~~ 197 (434)
++-+....|+..++.+. +....+.. ...+..|+|++.+..|+.+. ..+.|+.+++... .....
T Consensus 380 ll~~~~~~I~~id~~~~-~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~---------- 447 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRS-EYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---------- 447 (699)
T ss_dssp BCCCCTTC-CEECTTSC-CEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB----------
T ss_pred EEecCccceEEEeCCCC-cceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE----------
Confidence 33344467777777764 33333332 24566788888666665553 4567777777641 11000
Q ss_pred EeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeC--C-EEEEEeCCCcEEEEEcCCCCCccccceeecCccc
Q 013881 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274 (434)
Q Consensus 198 ~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 274 (434)
+.........|++.. . ++++-...+.|.++++.... ....+.....
T Consensus 448 ---------------------------i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~----~~~l~~~~~~ 496 (699)
T 1n7d_A 448 ---------------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFREQGS 496 (699)
T ss_dssp ---------------------------CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC----EEEECCCSSC
T ss_pred ---------------------------EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc----eEEEEeCCCC
Confidence 000111223345442 2 33444456778777766431 1111111112
Q ss_pred eEEEEEEC--CCEEEEecC--CCcEEEEeCCCCeEEEEEccccccEEEEEEc--CC-EEEEEeCCCcEEEEEcCCCCceE
Q 013881 275 AVVSLVVG--ANKLYSGSM--DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ-FLLSCSLDKTIKVWFATDSGNLE 347 (434)
Q Consensus 275 ~v~~l~~~--~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~ 347 (434)
....|+++ +.+|+.+.. .+.|.++++........+...-.....|+++ ++ ++++-+..+.|.++++.... ..
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~ 575 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RK 575 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CE
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eE
Confidence 23455564 344444432 2678888775432222222222334567776 34 44555567789999886432 23
Q ss_pred EEeee-cCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccccc
Q 013881 348 VTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIF 397 (434)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 397 (434)
.+... ........+++. . ..++++....+.|..++..+++.+..+.
T Consensus 576 ~~~~~~~~~~~P~glavd--~--~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVF--E--DKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECCCSSSCSSCCCCEEE--T--TEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEecCCcCCCceEeEEE--C--CEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 33221 111112223321 2 2366666677899999987776655543
No 324
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.21 E-value=0.65 Score=41.72 Aligned_cols=220 Identities=10% Similarity=0.023 Sum_probs=108.5
Q ss_pred ceEEEEe--CCCEEEEEcCCcEEEEECCCCceEEec-----CCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcccc
Q 013881 193 EVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLS-----GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265 (434)
Q Consensus 193 ~~~~~~~--~~~~l~~~~~~~i~~w~~~~~~~~~~~-----~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 265 (434)
.+..+.+ .+..++++..+.| +...+.++..... .....+.++.+.++.+++++..+.|+. ...+...++.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~--S~DgG~tW~~ 113 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH--TTDGGQSWSQ 113 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE--ESSTTSSCEE
T ss_pred cEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE--ECCCCCCceE
Confidence 3444444 4455566666654 3344444332211 234578899998875555566675443 3332223333
Q ss_pred ceeecCccceEEEEEE-CCCEEEEecCCCcEEEEeCCCCeEEEEE-ccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCC
Q 013881 266 AASLKGHSLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATD 342 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~ 342 (434)
+.....+...+..+.+ .++.++.++.++.|..- ...++.-..+ ......+..+.+. +..++..+.++.+..-+-..
T Consensus 114 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 114 IPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp CCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred CccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence 3222122334556655 34455555556655321 1223322222 2345567888877 33444555566554432111
Q ss_pred CCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc-----cccCcEEEEEecCCc-EEEEe
Q 013881 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI-----FAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~spdg-~l~s~ 416 (434)
+....... ......+..+.+.++.. ++..+.+|.+++.+...++.-..+ .....+.++.+.+++ .++++
T Consensus 193 G~tW~~~~-~~~~~~~~~~~~~~~g~----~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 193 QTAWEPHN-RTTSRRLHNMGFTPDGR----LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp CSSCEEEE-CCSSSCEEEEEECTTSC----EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred CCceeECC-CCCCCccceeEECCCCC----EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe
Confidence 22222222 22234566676654432 445556888887743323322221 123458899999888 55554
Q ss_pred CCCCCE
Q 013881 417 DGTGQV 422 (434)
Q Consensus 417 ~~dg~i 422 (434)
.+|.|
T Consensus 268 -~~g~i 272 (327)
T 2xbg_A 268 -GAGAL 272 (327)
T ss_dssp -STTCE
T ss_pred -CCCeE
Confidence 46666
No 325
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.10 E-value=0.73 Score=41.23 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=107.8
Q ss_pred EEEEeC--CcEEEec-CCCeEEEEeCCCCceEEEEecC----cc--ccEEEEEc---cCCCCEEEEEE------------
Q 013881 114 CRNWVQ--GNCMYGE-KCKFLHSWTVGDGFKLLTQLEG----HQ--KVVSGITL---PSGSDKLYSGS------------ 169 (434)
Q Consensus 114 c~~~~~--~~~~~g~-~d~~i~vwd~~~~~~~~~~l~~----h~--~~V~~l~~---s~~~~~l~s~s------------ 169 (434)
|..|.. +.++.++ ..+.|..|+...+......+.+ .. ..+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 467854 5666676 6899999999855222223432 11 24689999 68877777544
Q ss_pred -CCCcEEEEECC---CCceEEEEecCC--------------ceEEEE--eCCCEEE-EEcC-CcEEEEECCCCceEEe--
Q 013881 170 -KDETVRVWDCA---SGQCAGVINLGG--------------EVGCMI--SEGPWIF-IGVT-NFVKAWNTQTNTDLSL-- 225 (434)
Q Consensus 170 -~dg~v~iwd~~---~~~~~~~~~~~~--------------~~~~~~--~~~~~l~-~~~~-~~i~~w~~~~~~~~~~-- 225 (434)
.+..|..+|+. +++.+....+.. ....+. .++..-+ -+.. +.|...+........+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 26779999999 888877776431 122232 2344333 3445 6666666665533321
Q ss_pred cC----CCCcEEEEEEeCC--EEEEEeCCCcEEEEEcCCCCCccccceee-------cCccceEEEEEECCCE-EEEecC
Q 013881 226 SG----PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL-------KGHSLAVVSLVVGANK-LYSGSM 291 (434)
Q Consensus 226 ~~----~~~~v~~l~~~~~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------~~h~~~v~~l~~~~~~-l~s~s~ 291 (434)
.. .....+.|++.|+ .|++....|.|..+|+..... .++... -.....+.....+++. +++...
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~--~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA--WPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC--CCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc--eeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 11 1223568899987 666665599999999884311 011111 1112223334456776 555555
Q ss_pred CCcEEEEeCCC
Q 013881 292 DNSIRVWNLET 302 (434)
Q Consensus 292 dg~i~vwd~~~ 302 (434)
.+.+.+.+...
T Consensus 255 ~~~~~l~S~Dg 265 (334)
T 2p9w_A 255 PYAISFRSWDN 265 (334)
T ss_dssp TEEEEEECSST
T ss_pred CCEEEEECCCC
Confidence 66666665444
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.018 Score=52.14 Aligned_cols=145 Identities=10% Similarity=-0.051 Sum_probs=82.5
Q ss_pred EEEEEeCCCcEEEEEcCCCCCccccceeecCc-cceEEEEEE----CCCEEEEe--cCCCcEEEEeCCCCeEEEEEccc-
Q 013881 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-SLAVVSLVV----GANKLYSG--SMDNSIRVWNLETLQCIQTLTEH- 312 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~----~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~- 312 (434)
++++++.||.|.-+|..+++. .-.+... ..++....- .+..++.+ +.||.|..+|..+|.....+...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~----~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI----IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE----EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred EEEEEeCCCeEEEEECCCCcE----EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 789999999999999988843 3333222 122222111 12234433 68999999999988665544321
Q ss_pred ---cccEEE---EEE-------cCCEEEEEeCCCcEEEEEcCCCCceEEEeeecCCcc-------EEEEE-eccCCCCCc
Q 013881 313 ---TSVVMS---LLC-------WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG-------VLALC-GMPDSEGKP 371 (434)
Q Consensus 313 ---~~~v~~---l~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~ 371 (434)
..++.. ... .+..+++++.++.+...|+.+++.+..+........ +..+. +..+ ..+.
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d-~~~~ 166 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ-ECEN 166 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------------------CC
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc-cCCC
Confidence 122221 011 467889999999999999999987766654321110 01000 0000 1112
Q ss_pred EEEEEeCCCeEEEEeCCCCc
Q 013881 372 VLLCSCNDNSVRFYDLPSFA 391 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~ 391 (434)
.|+.+..+..+.+.+ ++++
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC
T ss_pred eEEEecceEEEEEEC-CCCC
Confidence 577777777777776 4443
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.77 E-value=0.6 Score=43.25 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEEccc----cccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc----------
Q 013881 282 GANKLYSGSMDNSIRVWNLETLQCIQTLTEH----TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN---------- 345 (434)
Q Consensus 282 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~---------- 345 (434)
++..++.+- ++.||.-++......+.+... -..|..+..+ |++|+..+ +..|.|-.+..+..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 455444443 477888787754444555433 1245666666 56666664 66899988873321
Q ss_pred eE--EEeeec----CCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-cccc------c----cCcEEEEEec
Q 013881 346 LE--VTYTHN----EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER-GKIF------A----KQEIRAIQLG 408 (434)
Q Consensus 346 ~~--~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~------~----~~~v~~~~~s 408 (434)
++ .+.... ....+..+.|+|.+..+..|++-..|+.|++||+...... ..+. . ...|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11 111111 2356999999999887778999999999999999862211 1111 1 2678999999
Q ss_pred CCc-EEEE--eCCCCCEEE
Q 013881 409 PGG-LFFT--GDGTGQVRV 424 (434)
Q Consensus 409 pdg-~l~s--~~~dg~i~i 424 (434)
+++ .|.. ....|-|+-
T Consensus 189 ~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSSCEEEEECTTSCEEEE
T ss_pred CCCcEEEEEecCCCCCEEE
Confidence 998 4444 557787753
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.72 E-value=1 Score=40.03 Aligned_cols=173 Identities=7% Similarity=-0.019 Sum_probs=82.7
Q ss_pred EEEEEcCCCCCccccceeecCccceEEEEEECCCEEEEecCC-------CcEEEEeCCCCeEEEE--EccccccEEEEEE
Q 013881 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-------NSIRVWNLETLQCIQT--LTEHTSVVMSLLC 321 (434)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~ 321 (434)
+.+||..+.. +..+..+............++..++.|+.+ ..+.+||+.+.+-... +......-.++..
T Consensus 80 ~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSE--WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTE--EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCc--EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 6667765542 222222222222223344466666676653 3588899887654322 1111111223334
Q ss_pred cCCEEEEEeC------CCcEEEEEcCCCCceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 013881 322 WDQFLLSCSL------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSF 390 (434)
Q Consensus 322 ~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 390 (434)
.+..++.|+. -..+.+||+.+..-. ............+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRSMFGVAIH----KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE----TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcccceEEEE----CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 4666666654 245889998765322 22111111111111111 23467777643 35778998764
Q ss_pred c--ccccccccCcEEEEEecCCc-EEEEeCCC--------------CCEEEEEccCCc
Q 013881 391 A--ERGKIFAKQEIRAIQLGPGG-LFFTGDGT--------------GQVRVWQWCNGP 431 (434)
Q Consensus 391 ~--~~~~~~~~~~v~~~~~spdg-~l~s~~~d--------------g~i~iwd~~~g~ 431 (434)
+ .+..+.....-.+++.. ++ +++.|+.+ ..+.+||+.+.+
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CEEECCCCSSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEECCCCCCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 3 22222221111122222 45 66666643 458888887653
No 329
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.43 E-value=0.0036 Score=42.06 Aligned_cols=25 Identities=36% Similarity=0.833 Sum_probs=21.5
Q ss_pred ccccceeeeeccCccCCCCCCcccc
Q 013881 32 DTRQKVCNYWRAGKCNRFPCPYLHR 56 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~c~~l~~ 56 (434)
..+..+|.+|..|+|.|..|+|+|.
T Consensus 39 ~~~~~vC~~flkG~C~r~~C~y~H~ 63 (70)
T 3d2q_A 39 DNTVTVCMDYIKGRCSREKCKYFHP 63 (70)
T ss_dssp TTEEEBCHHHHTTCCCCTTCCSBCC
T ss_pred CCcceeccccCcCCCCCCCcCeeCC
Confidence 4456789999999999999999995
No 330
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.0048 Score=44.43 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=22.6
Q ss_pred ccccceeeeeccCccCCC--CCCcccccC
Q 013881 32 DTRQKVCNYWRAGKCNRF--PCPYLHREL 58 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~c~~l~~~~ 58 (434)
..+..||.||+.|+|+|- .|+|.|..-
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 445569999999999997 699999863
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.21 E-value=1.8 Score=40.06 Aligned_cols=162 Identities=11% Similarity=0.106 Sum_probs=97.0
Q ss_pred eEEEEEeCCcEEEecCCCeEEEEeCCCCceEEEEecCc----cccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEE
Q 013881 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH----QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (434)
Q Consensus 112 i~c~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (434)
..++.-.++.-+....++.||.-++.++ ...+.++-- -..|..+..+|+|++||..+.. .|.|-.+..+.....
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCC
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCc
Confidence 3344445566666666788888777643 222333221 2367889999999999988654 688888874321100
Q ss_pred -EecCCceEEEEeCCCEEEEEcCCcEEEEECCCCceEEecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEcCCCCC
Q 013881 188 -INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTN 261 (434)
Q Consensus 188 -~~~~~~~~~~~~~~~~l~~~~~~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~vwd~~~~~~ 261 (434)
.... ..-.++.|.+...+ .....+|..+.|+|- .|++-..|+.|++||+.....
T Consensus 102 ~~~~~----------------~~~q~~ty~l~~~~----~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 102 DVSIQ----------------DAFQIFHYSIDEEE----VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp CHHHH----------------HTTEEEEEEGGGCC------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred ccccc----------------cccceeEEEcCCcc----cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 0000 00012233332210 124678999999987 899999999999999986322
Q ss_pred ccccceee---------cCccceEEEEEECCC--EEE--EecCCCcEEEE
Q 013881 262 CFEPAASL---------KGHSLAVVSLVVGAN--KLY--SGSMDNSIRVW 298 (434)
Q Consensus 262 ~~~~~~~~---------~~h~~~v~~l~~~~~--~l~--s~s~dg~i~vw 298 (434)
++. .+ ......|.+++|.++ .|+ +.+..|.|+-.
T Consensus 162 --~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 162 --KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp --CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred --CCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 222 22 122367889999754 344 45688888765
No 332
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.09 E-value=0.0097 Score=41.79 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.5
Q ss_pred ccccceeeeeccCccCCC--CCCcccccCC
Q 013881 32 DTRQKVCNYWRAGKCNRF--PCPYLHRELP 59 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~c~~l~~~~p 59 (434)
..+-.||.+|+.|+|+|- .|+|.|-.-.
T Consensus 14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp SSEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred cchhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 344669999999999997 8999996543
No 333
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.02 E-value=0.007 Score=41.98 Aligned_cols=25 Identities=28% Similarity=0.729 Sum_probs=21.9
Q ss_pred cccceeeeeccCccCCC--CCCccccc
Q 013881 33 TRQKVCNYWRAGKCNRF--PCPYLHRE 57 (434)
Q Consensus 33 ~~~~~~~~~~~~~~~~~--~c~~l~~~ 57 (434)
-+-.||.+|++|+|+|- .|+|.|-.
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~ 33 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPS 33 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCC
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCC
Confidence 34569999999999998 89999975
No 334
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.99 E-value=0.0052 Score=44.24 Aligned_cols=25 Identities=36% Similarity=0.792 Sum_probs=22.7
Q ss_pred ccccceeeeeccCccCCCCCCcccc
Q 013881 32 DTRQKVCNYWRAGKCNRFPCPYLHR 56 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~c~~l~~ 56 (434)
..+..||.+|..|+|.|-.|+|+|.
T Consensus 53 ~~~~~vC~~flkG~C~r~~C~y~H~ 77 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMREKCKYFHP 77 (98)
T ss_dssp TCEEEBCHHHHHTCCCCTTCCSBCC
T ss_pred CCccccchhhccCCCCCCCcCccCC
Confidence 4567899999999999999999995
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.94 E-value=0.8 Score=41.54 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=49.0
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCccccceeec-CccceEEEEEECCCEEEEecC-C---------CcEEEEeCCCCeEEEE
Q 013881 241 LLFAGT-QDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGANKLYSGSM-D---------NSIRVWNLETLQCIQT 308 (434)
Q Consensus 241 ~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~-d---------g~i~vwd~~~~~~~~~ 308 (434)
+++.|+ ....+.+||+......+..+..+. .....-.....++..++.|+. + ..+.+||+.+.+-...
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 101 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL 101 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEEC
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEEC
Confidence 445554 345688888875333344443333 122222334456666667765 2 4689999988653321
Q ss_pred --Ec-cccccEEEEEEcCCEEEEEeCC
Q 013881 309 --LT-EHTSVVMSLLCWDQFLLSCSLD 332 (434)
Q Consensus 309 --~~-~~~~~v~~l~~~~~~l~s~s~d 332 (434)
+. .....-.++...+..++.|+.+
T Consensus 102 ~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 102 MSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp SCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCCCCcccccceEEEECCEEEEEeCcC
Confidence 21 1112223444557777777754
No 336
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.81 E-value=0.0064 Score=42.20 Aligned_cols=24 Identities=38% Similarity=0.683 Sum_probs=21.7
Q ss_pred cccceeeeeccCccCCCCCCcccc
Q 013881 33 TRQKVCNYWRAGKCNRFPCPYLHR 56 (434)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~c~~l~~ 56 (434)
....+|.+|..|+|.|.+|+|+|.
T Consensus 41 ~~~~vC~dflkG~C~r~~C~y~H~ 64 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRENCKYLHP 64 (83)
T ss_dssp TEEECCHHHHTTCCCCSSCSSCCC
T ss_pred CceeehhHhhhccccCCCcceeCC
Confidence 346799999999999999999995
No 337
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.62 E-value=0.0069 Score=42.54 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.4
Q ss_pred ccceeeeeccCccCCCCCCcccc
Q 013881 34 RQKVCNYWRAGKCNRFPCPYLHR 56 (434)
Q Consensus 34 ~~~~~~~~~~~~~~~~~c~~l~~ 56 (434)
+..||++|..|+|.|.+|+|+|-
T Consensus 50 ~~~vC~dflkG~C~r~~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRENCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCTTCCSBCC
T ss_pred ceeeehhhhhCcCCCCCcceecC
Confidence 56899999999999999999996
No 338
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=3.2 Score=39.48 Aligned_cols=199 Identities=6% Similarity=0.013 Sum_probs=102.9
Q ss_pred CcEEEEEE-------eCC--EEEEEeCCC-------cEEEEEcCCCCCcccc-c--eeecCccceEEEEEECC---CEEE
Q 013881 230 GQVYAMAV-------GND--LLFAGTQDG-------AILAWKFNVTTNCFEP-A--ASLKGHSLAVVSLVVGA---NKLY 287 (434)
Q Consensus 230 ~~v~~l~~-------~~~--~l~~g~~dg-------~i~vwd~~~~~~~~~~-~--~~~~~h~~~v~~l~~~~---~~l~ 287 (434)
.....++| +++ .|+++...+ .|.+++.... ..+.. . ..+.. -.....++.++ .+++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYv 263 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-GTFDDRSDIQLIAA-YKQCNGATIHPINGELYF 263 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-SCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-Cceeecccceeecc-CCCceEEEEcCCCCeEEE
Confidence 35788888 766 566665543 2556653331 11110 0 11111 11223445543 3566
Q ss_pred EecCCCcEEEEeCC-------CCeE-----------EEEE-c-cccccEEEEEEc--CCEE-EEEeCCCcEEEEEcCCCC
Q 013881 288 SGSMDNSIRVWNLE-------TLQC-----------IQTL-T-EHTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDSG 344 (434)
Q Consensus 288 s~s~dg~i~vwd~~-------~~~~-----------~~~~-~-~~~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~ 344 (434)
+-..++.|..+|+. +++. ...+ . ........++++ +++| ++-+....|+.++.....
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 66778889999987 4543 1121 1 122334678887 5644 444567888887654322
Q ss_pred -ce---EEEeeecCC-------------ccEEEEEeccCC-----CCCcEEEEEeCCCeEEEEeCCCCcccccccc----
Q 013881 345 -NL---EVTYTHNEE-------------HGVLALCGMPDS-----EGKPVLLCSCNDNSVRFYDLPSFAERGKIFA---- 398 (434)
Q Consensus 345 -~~---~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---- 398 (434)
.+ ..+...... .......+..++ ..+.++++=.....|+.++. ++.. ..+..
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~ 421 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGAS 421 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTT
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEeccccc
Confidence 11 222221000 011211222110 23335555556788999983 4422 11110
Q ss_pred ---------------------cCcEEEEEecCC-c-EEEEeCCCCCEEEEEccCCcc
Q 013881 399 ---------------------KQEIRAIQLGPG-G-LFFTGDGTGQVRVWQWCNGPV 432 (434)
Q Consensus 399 ---------------------~~~v~~~~~spd-g-~l~s~~~dg~i~iwd~~~g~~ 432 (434)
-.....|++.++ | ++++=..+..|+.++++....
T Consensus 422 ~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 422 TSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 134678999997 7 666667788999999876543
No 339
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.41 E-value=0.0093 Score=40.03 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=21.0
Q ss_pred ccceeeeeccCccCCC--CCCccccc
Q 013881 34 RQKVCNYWRAGKCNRF--PCPYLHRE 57 (434)
Q Consensus 34 ~~~~~~~~~~~~~~~~--~c~~l~~~ 57 (434)
+..||.+|+.|+|+|- .|+|.|-.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCc
Confidence 4569999999999997 69999965
No 340
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.39 E-value=2.8 Score=37.95 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEE
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWD 178 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd 178 (434)
..-..|+|.|++++++ +..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE
Confidence 3457899999998555 56679999988
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.86 E-value=5 Score=40.20 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=90.1
Q ss_pred CcEEEEECCCCceEEec-C------CC--CcEEEEEEe-CC-EEEEEeCC------CcEEEEEcCCCCCccccceeecCc
Q 013881 210 NFVKAWNTQTNTDLSLS-G------PV--GQVYAMAVG-ND-LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGH 272 (434)
Q Consensus 210 ~~i~~w~~~~~~~~~~~-~------~~--~~v~~l~~~-~~-~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h 272 (434)
+.+.+||..+++...+. . .. ..-..+.+. .+ +++.|+.+ ..+.+||..+.. +..+..+...
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~~~p~~ 489 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIKSLSHT 489 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECCCCSBC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECCCCCCC
Confidence 35778888877655333 1 11 122333341 44 66666644 347788877642 2333222222
Q ss_pred cceEEEEEE-CCCEEEEecCCC--cEEEEeCCCCeEEEEEc-----cccccEEEEEEc---CCEEEEEeC--C-----Cc
Q 013881 273 SLAVVSLVV-GANKLYSGSMDN--SIRVWNLETLQCIQTLT-----EHTSVVMSLLCW---DQFLLSCSL--D-----KT 334 (434)
Q Consensus 273 ~~~v~~l~~-~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~-----~~~~~v~~l~~~---~~~l~s~s~--d-----g~ 334 (434)
...-....+ ++..++.|+.++ .+.+||+.+.+-...-. .....-.++.+. +..++.|+. + ..
T Consensus 490 R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 222233443 667777777654 79999998865432211 111112334445 446666665 2 45
Q ss_pred EEEEEcCCCCc-----eEEEeee--cCCccEEEEEeccCCCCCcEEEEEeC--------CCeEEEEeCCCCc
Q 013881 335 IKVWFATDSGN-----LEVTYTH--NEEHGVLALCGMPDSEGKPVLLCSCN--------DNSVRFYDLPSFA 391 (434)
Q Consensus 335 i~vwd~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~iwd~~~~~ 391 (434)
+.+||+.+..- ...+... ........+ .. . ++.+++.|+. ...|.+||+.+.+
T Consensus 570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~--~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YI--T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EE--E-TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEEccCCccccceEEEEcCCCCCCCcccceEE-Ee--C-CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 88999987762 2222221 111111111 11 1 1347777774 3468999998754
No 342
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.80 E-value=4.8 Score=38.34 Aligned_cols=145 Identities=6% Similarity=0.006 Sum_probs=82.9
Q ss_pred eEEEEEeC---CcEEEecC-CCeEEEEeCCCCceEEEEecCc---cccEEEEEc-------cCCCCEEEEEECCC-----
Q 013881 112 ILCRNWVQ---GNCMYGEK-CKFLHSWTVGDGFKLLTQLEGH---QKVVSGITL-------PSGSDKLYSGSKDE----- 172 (434)
Q Consensus 112 i~c~~~~~---~~~~~g~~-d~~i~vwd~~~~~~~~~~l~~h---~~~V~~l~~-------s~~~~~l~s~s~dg----- 172 (434)
-..+++.+ +.++.... .+.|++.|.+++ .+...+..- ......|+| ++++++|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45667764 33444443 357888888886 444433322 235899999 99999777776654
Q ss_pred --cEEEEECCC-Cce--------EEEEecCCceEEEEeCCCEEE-EEc-CCcEEEEECC-------CCce----------
Q 013881 173 --TVRVWDCAS-GQC--------AGVINLGGEVGCMISEGPWIF-IGV-TNFVKAWNTQ-------TNTD---------- 222 (434)
Q Consensus 173 --~v~iwd~~~-~~~--------~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~~w~~~-------~~~~---------- 222 (434)
.|.+.+... ++. +..+.... -..+.+.+..|+ +.. .+.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666444 222 22222111 122333344444 443 5679999987 4443
Q ss_pred ----EEecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEcCC
Q 013881 223 ----LSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNV 258 (434)
Q Consensus 223 ----~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~vwd~~~ 258 (434)
+...........++|+++ . +++-+....|+.+++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 111223345678999988 4 44445678898877654
No 343
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=93.78 E-value=4.3 Score=37.77 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=129.0
Q ss_pred ceEEEEeC-CCEEEEEcCCcEEEEECCCCce-------------EEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEc--
Q 013881 193 EVGCMISE-GPWIFIGVTNFVKAWNTQTNTD-------------LSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF-- 256 (434)
Q Consensus 193 ~~~~~~~~-~~~l~~~~~~~i~~w~~~~~~~-------------~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~-- 256 (434)
.+..+... ...++...++.|..|-....-+ .........|..++......++-..||.|+.|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence 45555553 4455556788999996533111 1112234578888888887777789999999985
Q ss_pred CCCCCc------cccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC-----------------------eEEE
Q 013881 257 NVTTNC------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-----------------------QCIQ 307 (434)
Q Consensus 257 ~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~-----------------------~~~~ 307 (434)
...... .............|..++....+.+.-..||.|+.|-.... .+..
T Consensus 156 n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~ 235 (423)
T 3mvd_K 156 DSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ 235 (423)
T ss_dssp CSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEE
T ss_pred CCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeE
Confidence 221110 01111111233468888888888888889999999954321 1111
Q ss_pred EEccccccEEEEEEcCCEEEEE-eCCCcEEEEEcCCCCceE---------EEeeecCCccEEEEEeccCCCCCcEEEEEe
Q 013881 308 TLTEHTSVVMSLLCWDQFLLSC-SLDKTIKVWFATDSGNLE---------VTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (434)
........|..++......+.. ..++.|..|-......+- ..........+..++.-. ...+.-.
T Consensus 236 v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~-----~ht~alt 310 (423)
T 3mvd_K 236 LIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ-----HHTVILT 310 (423)
T ss_dssp ECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS-----SEEEEEE
T ss_pred EeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc-----CeEEEEe
Confidence 1112234566776665554444 689999999755422111 011111122455554322 2455556
Q ss_pred CCCeEEEEeCCCCcccc------------cccc-cCcEEEEEecCCcEEEEeCCCCCEEEEEccC
Q 013881 378 NDNSVRFYDLPSFAERG------------KIFA-KQEIRAIQLGPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 378 ~dg~i~iwd~~~~~~~~------------~~~~-~~~v~~~~~spdg~l~s~~~dg~i~iwd~~~ 429 (434)
.||.|+.|-....-.+. .+.. ...|..|+..... .++-..||.|+.|=...
T Consensus 311 ~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~h-s~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 311 TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVC-SYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTE-EEEEETTSCEEEEECCT
T ss_pred CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCe-EEEEcCCCCEEEECCCC
Confidence 79999999764321111 1111 2267777766553 33336789999997654
No 344
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.75 E-value=3.9 Score=37.12 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=23.8
Q ss_pred cCcEEEEEecCCc-E-EEEeCCCCCEEEEEccC
Q 013881 399 KQEIRAIQLGPGG-L-FFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 399 ~~~v~~~~~spdg-~-l~s~~~dg~i~iwd~~~ 429 (434)
-...+.++|+||+ . +++-+..+.|..|++..
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3557899999999 4 45556778999999863
No 345
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.19 E-value=0.035 Score=37.37 Aligned_cols=27 Identities=30% Similarity=0.857 Sum_probs=23.2
Q ss_pred cccceeeeecc-CccCCCCCCcccccCC
Q 013881 33 TRQKVCNYWRA-GKCNRFPCPYLHRELP 59 (434)
Q Consensus 33 ~~~~~~~~~~~-~~~~~~~c~~l~~~~p 59 (434)
.+..+|.||.. |.|.+..|+|+|...+
T Consensus 42 ~~~~~C~~f~~~G~C~~~~C~y~H~~p~ 69 (72)
T 2rhk_C 42 TKMSECYFYSKFGECSNKECPFLHIDPE 69 (72)
T ss_dssp TSCCBCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred ccCCcccccCCCCCCCCCCeeccCCCcc
Confidence 45679999999 9999988999998744
No 346
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=92.84 E-value=0.06 Score=38.71 Aligned_cols=25 Identities=32% Similarity=1.031 Sum_probs=21.8
Q ss_pred ccccceeeeeccCccCCCC-CCcccc
Q 013881 32 DTRQKVCNYWRAGKCNRFP-CPYLHR 56 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-c~~l~~ 56 (434)
.....+|.||+.|.|.+-. |+|.|.
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC
Confidence 4567899999999999876 999998
No 347
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.40 E-value=0.066 Score=36.58 Aligned_cols=27 Identities=30% Similarity=0.849 Sum_probs=23.0
Q ss_pred cccceeeeecc-CccCCCCCCcccccCC
Q 013881 33 TRQKVCNYWRA-GKCNRFPCPYLHRELP 59 (434)
Q Consensus 33 ~~~~~~~~~~~-~~~~~~~c~~l~~~~p 59 (434)
.+..+|.||.. |.|.+..|+|+|...+
T Consensus 36 ~~~~~C~~f~~~G~C~~~~C~f~H~~~~ 63 (77)
T 2d9n_A 36 TKMPECYFYSKFGECSNKECPFLHIDPE 63 (77)
T ss_dssp TTSCBCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred CcCCCCcccCCCCccCCCCeeccCCCcc
Confidence 34568999999 9999888999998754
No 348
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=92.40 E-value=6.5 Score=36.07 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=106.9
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc--------cc--cceeecCccceEEEEEECCCEEEEecCCCcEEEEeC
Q 013881 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--------FE--PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 231 ~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~--------~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 300 (434)
.|..++......+.-..||.|+.|-....... .. .+..+......+..++....+.+.-..||.|+.|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 46667777777777788999999965432110 01 111111111222334445667777788999999954
Q ss_pred CC-----------CeEEEEEcc-ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCce----------EEEeeecCCccE
Q 013881 301 ET-----------LQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL----------EVTYTHNEEHGV 358 (434)
Q Consensus 301 ~~-----------~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~ 358 (434)
.. ......+.. ....|..++.-....++...||.|+.|-......+ ...........+
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 32 111122222 22368888888888888899999999965432111 111111122345
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-----------cc--ccCcEEEEEecCCcEEEEeCCCCCEEEE
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-----------IF--AKQEIRAIQLGPGGLFFTGDGTGQVRVW 425 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~--~~~~v~~~~~spdg~l~s~~~dg~i~iw 425 (434)
..++.-. +....++-..||.|+.|-....-.+.. +. ....|..|+.... ..++-..||.|+.|
T Consensus 214 ~~ia~G~---g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~w 289 (389)
T 3kci_A 214 VDIACGS---GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTW 289 (389)
T ss_dssp EEEEECC---SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEE
T ss_pred EEEEEcC---CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEE
Confidence 5554421 112455666899999997654222111 11 1224666666544 33344678889988
Q ss_pred Ecc
Q 013881 426 QWC 428 (434)
Q Consensus 426 d~~ 428 (434)
-..
T Consensus 290 G~n 292 (389)
T 3kci_A 290 GKG 292 (389)
T ss_dssp ECC
T ss_pred eCC
Confidence 754
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.97 E-value=7.4 Score=38.95 Aligned_cols=189 Identities=11% Similarity=0.089 Sum_probs=95.4
Q ss_pred eCCEEEEEeCC----CcEEEEEcCCCCCccccce-e-----ecCccceEEEEEE--CCCEEEEecCC------CcEEEEe
Q 013881 238 GNDLLFAGTQD----GAILAWKFNVTTNCFEPAA-S-----LKGHSLAVVSLVV--GANKLYSGSMD------NSIRVWN 299 (434)
Q Consensus 238 ~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~-~-----~~~h~~~v~~l~~--~~~~l~s~s~d------g~i~vwd 299 (434)
...+++.|+.+ ..+.+||..+.. +..+. . +......-..... ++..++.|+.+ ..+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 33466677643 468888887653 22222 1 1111222344555 56666677643 3588999
Q ss_pred CCCCeEEE--EEccccccEEEEEE-cCCEEEEEeCCC--cEEEEEcCCCCceEEEee--ec-CCccEEEEEeccCCCCCc
Q 013881 300 LETLQCIQ--TLTEHTSVVMSLLC-WDQFLLSCSLDK--TIKVWFATDSGNLEVTYT--HN-EEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 300 ~~~~~~~~--~~~~~~~~v~~l~~-~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 371 (434)
+.+.+-.. .+......-.++.+ .+..++.|+.++ .+.+||..+..-...... .. ......++.+. ...+.
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~--~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD--PVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE--TTTTE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe--CCCCE
Confidence 98854322 22222222234443 567777777654 689999876532211110 11 11111112221 22244
Q ss_pred EEEEEeC--C-----CeEEEEeCCCCcc--------cccc--cccCcEEEEEecCCc-EEEEeCC--------CCCEEEE
Q 013881 372 VLLCSCN--D-----NSVRFYDLPSFAE--------RGKI--FAKQEIRAIQLGPGG-LFFTGDG--------TGQVRVW 425 (434)
Q Consensus 372 ~l~~~~~--d-----g~i~iwd~~~~~~--------~~~~--~~~~~v~~~~~spdg-~l~s~~~--------dg~i~iw 425 (434)
+++.|+. + +.+.+||+.+.+- +... .......++. ..++ +++.|+. ...|.+|
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 7777765 2 4688999887651 1111 1111222233 3335 6666763 3568999
Q ss_pred EccCCc
Q 013881 426 QWCNGP 431 (434)
Q Consensus 426 d~~~g~ 431 (434)
|..+.+
T Consensus 632 d~~t~~ 637 (695)
T 2zwa_A 632 DPLSET 637 (695)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 988754
No 350
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=91.12 E-value=9.4 Score=35.26 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=112.8
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc--------cccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCC
Q 013881 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE 301 (434)
Q Consensus 230 ~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 301 (434)
..|..++......++-..+|.|+.|-.....+. ..+..........|..++....+.+.-..||.|+.|-..
T Consensus 121 ~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n 200 (406)
T 4d9s_A 121 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 200 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCC
Confidence 367788887777777788999999975542210 011111111123678888888888888899999999643
Q ss_pred CC----------e-EEEEEcc-ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCce----------EEEeeecCCccEE
Q 013881 302 TL----------Q-CIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL----------EVTYTHNEEHGVL 359 (434)
Q Consensus 302 ~~----------~-~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~ 359 (434)
.. . ....+.. ....|..++.-..+.+.-..+|.|+.|-.....++ ...........+.
T Consensus 201 ~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~ 280 (406)
T 4d9s_A 201 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 280 (406)
T ss_dssp TTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEE
Confidence 21 1 1111211 23567788877788888889999999975443221 0111111122355
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-------------ccccCcEEEEEecCCcEEEEeCCCCCEEEEE
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-------------IFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQ 426 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd 426 (434)
.++.-. ...++-..||.|+.|-....-.+.. +.....|..|+.... ..++-..||.|+.|=
T Consensus 281 ~i~~G~-----~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~-hs~alt~~G~v~~wG 354 (406)
T 4d9s_A 281 QISGGW-----RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR-HTLAVTERNNVFAWG 354 (406)
T ss_dssp EEEECS-----SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS-EEEEEETTSCEEEEE
T ss_pred EEEecC-----CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC-eEEEEeCCCCEEEec
Confidence 554321 2445556899999997654322211 112345666665544 444445788999997
Q ss_pred cc
Q 013881 427 WC 428 (434)
Q Consensus 427 ~~ 428 (434)
..
T Consensus 355 ~n 356 (406)
T 4d9s_A 355 RG 356 (406)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 351
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=89.84 E-value=12 Score=34.34 Aligned_cols=234 Identities=17% Similarity=0.179 Sum_probs=135.1
Q ss_pred eEEEEEeCCcEEEecCCCeEEEEeCCCC----------ceEEEEecC-ccccEEEEEccCCCCEEEEEECCCcEEEEECC
Q 013881 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDG----------FKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (434)
Q Consensus 112 i~c~~~~~~~~~~g~~d~~i~vwd~~~~----------~~~~~~l~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 180 (434)
|..++--....++-..||.|+.|-.... ......+.. ....+..++++....+.+.-..||.|..|-..
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 4444445556667778999999964321 011122222 22345556777677778888899999999653
Q ss_pred CC---------ceE--EEEec--CCceEEEEeCC-CEEEEEcCCcEEEEECCCCc---------eE---Eec-CCCCcEE
Q 013881 181 SG---------QCA--GVINL--GGEVGCMISEG-PWIFIGVTNFVKAWNTQTNT---------DL---SLS-GPVGQVY 233 (434)
Q Consensus 181 ~~---------~~~--~~~~~--~~~~~~~~~~~-~~l~~~~~~~i~~w~~~~~~---------~~---~~~-~~~~~v~ 233 (434)
.. ... ..+.. ...+..+.... ..++...++.|..|-....- .. .+. .....|.
T Consensus 135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 21 011 11111 12455555544 44555678899999653311 11 111 1234677
Q ss_pred EEEEeC--CEEEEEeCCCcEEEEEcCCCCCc--------cccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC
Q 013881 234 AMAVGN--DLLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL 303 (434)
Q Consensus 234 ~l~~~~--~~l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 303 (434)
.++... ...++-..||.|+.|-.....+. ..+..........|..++....+.+.-..||.|+.|=....
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence 777764 46666788999999975432110 01111111112357778877777777788999999965321
Q ss_pred -----------eEEEEEcc-ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCc
Q 013881 304 -----------QCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 304 -----------~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~ 345 (434)
.....+.. ....|..++.-....++...||.|+.|-.....+
T Consensus 295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred CCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCc
Confidence 11122222 2345788887777888889999999997765443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.05 E-value=13 Score=38.70 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=35.7
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
..|.+++..++..+++|-+.|+++|+|++.+++++.+....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 35777888889999999999999999999999999887653
No 353
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=86.49 E-value=20 Score=33.05 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=132.1
Q ss_pred CCceEEEEeCC-CEEEEEcCCcEEEEECCCCce-------------EEecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEc
Q 013881 191 GGEVGCMISEG-PWIFIGVTNFVKAWNTQTNTD-------------LSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256 (434)
Q Consensus 191 ~~~~~~~~~~~-~~l~~~~~~~i~~w~~~~~~~-------------~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~ 256 (434)
...+..+.... ..++...++.|..|-....-+ .........|..++......++-+.||.|+.|-.
T Consensus 58 ~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 58 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence 34566665544 445556788999996543110 0111223478888888887777789999999975
Q ss_pred --CCCCC---------ccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeCCCC-eE-------------------
Q 013881 257 --NVTTN---------CFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-QC------------------- 305 (434)
Q Consensus 257 --~~~~~---------~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~-~~------------------- 305 (434)
..... ...+... .....|..++....+.+.-..||.|+.|=.... ++
T Consensus 138 ~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 215 (413)
T 1a12_A 138 FRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL 215 (413)
T ss_dssp EEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHH
T ss_pred CcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccc
Confidence 21100 0011111 223467888888888888889999999965431 10
Q ss_pred --EEEEcc------ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceE-------EEe---eecCC--ccEEEEEecc
Q 013881 306 --IQTLTE------HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLE-------VTY---THNEE--HGVLALCGMP 365 (434)
Q Consensus 306 --~~~~~~------~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------~~~---~~~~~--~~~~~~~~~~ 365 (434)
...+.. ....|..++.-..+.++-..||.|+.|-.....++- ... ..... ..+..++.-.
T Consensus 216 ~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~ 295 (413)
T 1a12_A 216 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQ 295 (413)
T ss_dssp HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECS
T ss_pred ccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEeccc
Confidence 011111 235678888878888888899999999765432210 000 00001 2255554322
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCCCcccc------------cccccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 366 DSEGKPVLLCSCNDNSVRFYDLPSFAERG------------KIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 366 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
...++-..||.|+.|-....-.+. .+.....|..|+.... ..++-..||.|+.|-..
T Consensus 296 -----~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~-hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 296 -----HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGAS-VGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp -----SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSS-EEEEEETTSCEEEEECC
T ss_pred -----ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcc-eEEEEeCCCCEEEecCC
Confidence 234455678999999765422111 1111236777766544 44444578899999765
No 354
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=86.22 E-value=21 Score=32.95 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=135.0
Q ss_pred cceEEEEEeCCcEEEecCCCeEEEEeCCCC-------------ceEEEEecCccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 110 TDILCRNWVQGNCMYGEKCKFLHSWTVGDG-------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 110 ~~i~c~~~~~~~~~~g~~d~~i~vwd~~~~-------------~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
..|..++--....++-..||.|+.|-.... ..+.. +. -...|..|+.. ..+.+.-..||.|..
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v~-l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK-VE-LQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE-CC-CCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE-ec-CCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 345566655566677778999999965421 00111 11 12356666653 345566678899999
Q ss_pred EEC--CC-Cce-----------EEEEecCCceEEEEeCC-CEEEEEcCCcEEEEECCCCce-------------------
Q 013881 177 WDC--AS-GQC-----------AGVINLGGEVGCMISEG-PWIFIGVTNFVKAWNTQTNTD------------------- 222 (434)
Q Consensus 177 wd~--~~-~~~-----------~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~~w~~~~~~~------------------- 222 (434)
|-. .. +++ ...+.....+..+.... ..++...++.|..|-....-+
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 975 21 110 11222334556665543 445556788999996543211
Q ss_pred ------EEecC----CCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc--------ccc--ceeecCccceEEEEEEC
Q 013881 223 ------LSLSG----PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--------FEP--AASLKGHSLAVVSLVVG 282 (434)
Q Consensus 223 ------~~~~~----~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~--------~~~--~~~~~~h~~~v~~l~~~ 282 (434)
+.+.. ....|..++......++-..+|.|+.|-.....+. ..+ +..+......|..++..
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G 294 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred cccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc
Confidence 01100 23568888888886666779999999976542110 011 11111112347888887
Q ss_pred CCEEEEecCCCcEEEEeCCC------C------eEEEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCC
Q 013881 283 ANKLYSGSMDNSIRVWNLET------L------QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDS 343 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~------~------~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 343 (434)
..+.+.-..||.|+.|-... + .....+.. -..|..++.-....++-..||.|+.|-....
T Consensus 295 ~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~ 366 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGASVGYAVTKDGRVFAWGMGTN 366 (413)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcceEEEEeCCCCEEEecCCCC
Confidence 77777778899999996432 1 11122222 2368888887788888889999999976543
No 355
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=86.10 E-value=19 Score=32.40 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=43.6
Q ss_pred EEEEEeC-CcEEEecCCCeEEEEeCCCC-ceEEEEec---CccccEEEEEccCC---CCEEEEEEC-C-----CcEEEEE
Q 013881 113 LCRNWVQ-GNCMYGEKCKFLHSWTVGDG-FKLLTQLE---GHQKVVSGITLPSG---SDKLYSGSK-D-----ETVRVWD 178 (434)
Q Consensus 113 ~c~~~~~-~~~~~g~~d~~i~vwd~~~~-~~~~~~l~---~h~~~V~~l~~s~~---~~~l~s~s~-d-----g~v~iwd 178 (434)
..++|.+ +.++.+...+.|++++ ++ .+.+..+. ........|+|+|+ +..|+.+.. . ..|..++
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 4677755 4577777889999998 33 22333222 22457889999998 555555443 2 6788888
Q ss_pred CCCC
Q 013881 179 CASG 182 (434)
Q Consensus 179 ~~~~ 182 (434)
...+
T Consensus 112 ~~~~ 115 (352)
T 2ism_A 112 HLGE 115 (352)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 7654
No 356
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=85.45 E-value=25 Score=33.17 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=111.8
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcc------------------------------ccceeecC-------
Q 013881 229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF------------------------------EPAASLKG------- 271 (434)
Q Consensus 229 ~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~------------------------------~~~~~~~~------- 271 (434)
...|..++......++-..||.|+.|-.....+.- .....+..
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 34688888887766667789999999654321100 00011111
Q ss_pred ccceEEEEEECCCEEEEecCCCcEEEEeCC---CCeE------------EEEEcc-ccccEEEEEEcCCEEEEEeCCCcE
Q 013881 272 HSLAVVSLVVGANKLYSGSMDNSIRVWNLE---TLQC------------IQTLTE-HTSVVMSLLCWDQFLLSCSLDKTI 335 (434)
Q Consensus 272 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~---~~~~------------~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i 335 (434)
....|..++......+.-..||.|+.|-.. .+++ ...+.. ....|..|+.-....+.-..+|.|
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 135688888888888888899999999751 1111 111111 123588888888888888999999
Q ss_pred EEEEcCCCCceEEEe-----------eecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc---------
Q 013881 336 KVWFATDSGNLEVTY-----------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK--------- 395 (434)
Q Consensus 336 ~vwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 395 (434)
+.|-.....++-.-. .......+..++.- ....++-..+|.|+.|-....-.+..
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G-----~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG-----ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC-----SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC-----CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999665433211100 00001235555442 22455556799999997654222110
Q ss_pred ------cc--ccCcEEEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 396 ------IF--AKQEIRAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 396 ------~~--~~~~v~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
+. ....|..|+.... ..++-..||.|+.|-..
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRL 340 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEEC
T ss_pred eeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECC
Confidence 01 1235666666544 33333578889988754
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=85.25 E-value=15 Score=36.62 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=66.2
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCcccc-----------cee-ec-----CccceEEEEEECCCEEEEecCCC
Q 013881 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP-----------AAS-LK-----GHSLAVVSLVVGANKLYSGSMDN 293 (434)
Q Consensus 231 ~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-----------~~~-~~-----~h~~~v~~l~~~~~~l~s~s~dg 293 (434)
+-.-++.+++.++++-.||.+.-.+-..... +++ +.. +. .....|.++.++..++++-+.|.
T Consensus 163 Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d-~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~~Dh 241 (729)
T 3f7f_A 163 PHFLFYVSPQFSVVFLEDGGLLGLKKVDGVH-YEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLTQNC 241 (729)
T ss_dssp EEEEEECSSSBEEEEETTSCEECCEESSSSC-EECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEETTC
T ss_pred CcEEEEECCCeEEEEEcCCCEEEEEeccCCC-cceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEEcCC
Confidence 4444555666677777777666555433211 110 000 11 12235777788888999999999
Q ss_pred cEEEEeCCCCeEEEEEccccc-------------cEEEEEEcCCEEEEEe--CCCcEEEEEcCCC
Q 013881 294 SIRVWNLETLQCIQTLTEHTS-------------VVMSLLCWDQFLLSCS--LDKTIKVWFATDS 343 (434)
Q Consensus 294 ~i~vwd~~~~~~~~~~~~~~~-------------~v~~l~~~~~~l~s~s--~dg~i~vwd~~~~ 343 (434)
++|+||+++++++.+..-... +-.-+...+.++++=. ..|..++|.+...
T Consensus 242 ~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~~l~~~ 306 (729)
T 3f7f_A 242 HLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVD 306 (729)
T ss_dssp EEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC-
T ss_pred eEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEEEEEEc
Confidence 999999999999877654111 1111222245555433 4678889987543
No 358
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.99 E-value=4.3 Score=33.95 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=57.5
Q ss_pred ccEEEEEccCCCCEEEEEECCCcEEEEECCCCce------EEEEecC--CceEEEEe-CCCEEEEEcCCcEEEEECCCCc
Q 013881 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC------AGVINLG--GEVGCMIS-EGPWIFIGVTNFVKAWNTQTNT 221 (434)
Q Consensus 151 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~------~~~~~~~--~~~~~~~~-~~~~l~~~~~~~i~~w~~~~~~ 221 (434)
..++.++|+|++.+.+. .+|.+.-.+..+.+. -..+-.. ....++.+ .+..|.+..++.|.-++..+..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSD 118 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCST
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCC
Confidence 36779999998886555 677666666544211 1111110 11233433 3334444488988888764322
Q ss_pred eE--------EecCCCCcEEEEEEeCC-EEEEEeCCCcEEEE
Q 013881 222 DL--------SLSGPVGQVYAMAVGND-LLFAGTQDGAILAW 254 (434)
Q Consensus 222 ~~--------~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~vw 254 (434)
.. .-..-=..+..|.+.|+ .|.+.. |+.++-.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 11 11112257799999999 666666 8885543
No 359
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=84.79 E-value=27 Score=32.95 Aligned_cols=192 Identities=12% Similarity=0.112 Sum_probs=112.3
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEEcCC---C-------C--CccccceeecCccceEEEEEECCCEEEEecCCCcEE
Q 013881 229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNV---T-------T--NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296 (434)
Q Consensus 229 ~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~---~-------~--~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~ 296 (434)
...|..++......++-..+|.|+.|-... + . ....+..........|..++......+.-..+|.|+
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 367888888888777778999999997521 0 0 000111111111235888888888888888999999
Q ss_pred EEeCCC-CeE--------------EEEEccccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCceE-----------EE-
Q 013881 297 VWNLET-LQC--------------IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLE-----------VT- 349 (434)
Q Consensus 297 vwd~~~-~~~--------------~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-----------~~- 349 (434)
.|-... +++ ...+ ....|..++.-....++-..+|.|+.|-.....++- ..
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred EEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 996543 111 0111 114678888878888888899999999765432211 01
Q ss_pred --eeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-------------------------ccccCcE
Q 013881 350 --YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-------------------------IFAKQEI 402 (434)
Q Consensus 350 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------~~~~~~v 402 (434)
........+..++.-. ...++-..+|.|+.|-....-.+.. +.....|
T Consensus 305 ~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGE-----HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EECCCCTTCCEEEEEECS-----SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred ccccccCCccEEEEEeCC-----CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 1111113455555422 1344446789999997654222210 1111256
Q ss_pred EEEEecCCcEEEEeCCCCCEEEEEcc
Q 013881 403 RAIQLGPGGLFFTGDGTGQVRVWQWC 428 (434)
Q Consensus 403 ~~~~~spdg~l~s~~~dg~i~iwd~~ 428 (434)
..|+.... ..++-..||.|+.|-..
T Consensus 380 ~~Ia~G~~-hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAAGSH-HSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEECSS-EEEEEETTSCEEEEECC
T ss_pred EEEEeCCC-eEEEEeCCCcEEEeeCC
Confidence 66665544 34444678899999765
No 360
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=83.07 E-value=0.7 Score=31.32 Aligned_cols=30 Identities=17% Similarity=0.562 Sum_probs=23.8
Q ss_pred ccccccceeeee-ccCccCC-CCCCcccccCC
Q 013881 30 TADTRQKVCNYW-RAGKCNR-FPCPYLHRELP 59 (434)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~-~~c~~l~~~~p 59 (434)
......++|.|| +.|.|.. .-|+|.|..-.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 345677899999 5999996 66999997643
No 361
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=82.66 E-value=27 Score=31.39 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=34.6
Q ss_pred CcEEEEEeCCCeEEEEeCCCCccccc--cc-c-cCcEEEEEecCCc-EEEEe-CCCCCEEEEEc
Q 013881 370 KPVLLCSCNDNSVRFYDLPSFAERGK--IF-A-KQEIRAIQLGPGG-LFFTG-DGTGQVRVWQW 427 (434)
Q Consensus 370 ~~~l~~~~~dg~i~iwd~~~~~~~~~--~~-~-~~~v~~~~~spdg-~l~s~-~~dg~i~iwd~ 427 (434)
+.++++.-..+.|...++..++.... +. . ...+..+++.||| ++++. ..+| +||.+
T Consensus 289 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 289 QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 34666666778888888775433221 11 1 3579999999999 55543 3445 45554
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.37 E-value=30 Score=30.49 Aligned_cols=148 Identities=10% Similarity=0.089 Sum_probs=85.9
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEE---------EEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceE----
Q 013881 282 GANKLYSGSMDNSIRVWNLETLQCI---------QTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLE---- 347 (434)
Q Consensus 282 ~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~---- 347 (434)
+...+++.+.+|.|+--.+...+.. ..+......+..+..+ .+.++..+..|.++-+...+-....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 4557888999999998876543221 1223333334444444 6788888999998877654221110
Q ss_pred -----EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc-------ccccccccCcEEEEEecCCc-EEE
Q 013881 348 -----VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA-------ERGKIFAKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 348 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~v~~~~~spdg-~l~ 414 (434)
..........+..+..........+++..+..|.++...+.... ....+...+.+..+....+. .++
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~ 166 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVI 166 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEE
Confidence 01112222345555433321123367788899999998875432 22223335566666555444 788
Q ss_pred EeCCCCCEEEEEccC
Q 013881 415 TGDGTGQVRVWQWCN 429 (434)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (434)
..+.+|.+..+.+.+
T Consensus 167 l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 167 CLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHH
Confidence 888899988888754
No 363
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=80.01 E-value=25 Score=29.40 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=71.2
Q ss_pred eEEEEEECCC-EEEEecCCCcEEEEeCCCCeE------EEEEcc-ccccEEEEEEcCC-EEEEEeCCCcEEEEEcCCCCc
Q 013881 275 AVVSLVVGAN-KLYSGSMDNSIRVWNLETLQC------IQTLTE-HTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGN 345 (434)
Q Consensus 275 ~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~ 345 (434)
.+..++++++ .|++. .+|.++-.+..+.+. -..+-. --..-.++.++++ .|.++ .||.|+-++-.+...
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~ 119 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDT 119 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTT
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCC
Confidence 5668888754 45555 778887777655221 111110 0011356777733 33333 679888776533322
Q ss_pred eE-----EEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc------c--ccCcEEEEEecCCc-
Q 013881 346 LE-----VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI------F--AKQEIRAIQLGPGG- 411 (434)
Q Consensus 346 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~--~~~~v~~~~~spdg- 411 (434)
-. .......-..+..+.+.|+.. |.+.. |+.++-...++.....-+ . .-...+-+.|.+++
T Consensus 120 ~~Wl~~a~~vg~~gw~~~~~lff~p~G~----Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 120 DNWIARATEVGSGGWSGFKFLFFHPNGY----LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp CCHHHHSEEEECSSGGGEEEEEECTTSC----EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CceeccccEeccCCCCceEEEEECCCce----EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 11 111111113466777766554 55555 888655444432211111 1 12234557799999
Q ss_pred EEEEeCCCCCEEEEEc
Q 013881 412 LFFTGDGTGQVRVWQW 427 (434)
Q Consensus 412 ~l~s~~~dg~i~iwd~ 427 (434)
++++. +| ++|..
T Consensus 195 l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 195 LFGVQ--GG--KFYED 206 (236)
T ss_dssp EEEEE--TT--EEEEE
T ss_pred EEEEe--CC--eEEec
Confidence 44444 66 45544
No 364
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=77.42 E-value=0.89 Score=32.54 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=21.2
Q ss_pred cceeeee-ccCccCC-CCCCcccccCC
Q 013881 35 QKVCNYW-RAGKCNR-FPCPYLHRELP 59 (434)
Q Consensus 35 ~~~~~~~-~~~~~~~-~~c~~l~~~~p 59 (434)
..+|.|| +.|.|.+ ..|+|.|..++
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 5789999 5999998 78999998543
No 365
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=77.31 E-value=45 Score=30.71 Aligned_cols=232 Identities=11% Similarity=0.074 Sum_probs=131.5
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCC-------------ceEEEEecCCceEEEEeCC-CEEEEEcCCcEEEEEC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASG-------------QCAGVINLGGEVGCMISEG-PWIFIGVTNFVKAWNT 217 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~~w~~ 217 (434)
.|..|+. ...+.+.-..||.|..|=.... .....+.....+..+.... ..++...++.|..|-.
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 4655554 3456677788999999965331 1112223344566665544 4455567889999975
Q ss_pred --CCCceE-----------EecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEcCCCCCc-------------------ccc
Q 013881 218 --QTNTDL-----------SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC-------------------FEP 265 (434)
Q Consensus 218 --~~~~~~-----------~~~~~~~~v~~l~~~~~~l~~g~~dg~i~vwd~~~~~~~-------------------~~~ 265 (434)
...-.+ ........|..++......++-..+|.|+.|-.....+. ..+
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p 233 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSC
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCC
Confidence 222111 112234568888888887777789999999975432110 011
Q ss_pred ceeecCccceEEEEEECCCEEEEe-cCCCcEEEEeCCC-----------CeEEEEEccccccEEEEEEcCCEEEEEeCCC
Q 013881 266 AASLKGHSLAVVSLVVGANKLYSG-SMDNSIRVWNLET-----------LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDK 333 (434)
Q Consensus 266 ~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg 333 (434)
..........|..+.......+.. ..+|.|+.|-... .............|..++.-..+.+.-..||
T Consensus 234 ~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G 313 (423)
T 3mvd_K 234 TQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDL 313 (423)
T ss_dssp EEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTC
T ss_pred eEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCC
Confidence 111112234566666665544444 7899999996432 1111111112456788887788888889999
Q ss_pred cEEEEEcCCCCc---------eEEEee-ecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCC
Q 013881 334 TIKVWFATDSGN---------LEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 334 ~i~vwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 390 (434)
.|+.|-...... ...... ......+..++.-.. ..++-..||.|+.|-....
T Consensus 314 ~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~-----hs~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 314 KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV-----CSYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp CEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT-----EEEEEETTSCEEEEECCTT
T ss_pred cEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC-----eEEEEcCCCCEEEECCCCC
Confidence 999996543211 111111 111114555654322 3344468999999987653
No 366
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=76.37 E-value=47 Score=30.46 Aligned_cols=193 Identities=15% Similarity=0.204 Sum_probs=110.3
Q ss_pred CcEEEEEEeCCEEEEEeCC-CcEEEEEcCCCCC--------ccccceeecCccceEEEEEECCCEEEEecCCCcEEEEeC
Q 013881 230 GQVYAMAVGNDLLFAGTQD-GAILAWKFNVTTN--------CFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300 (434)
Q Consensus 230 ~~v~~l~~~~~~l~~g~~d-g~i~vwd~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 300 (434)
..|..++....+.++-..+ +.|+.|-...... .+.+..........|..++....+.+.-..||.|+.|-.
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCC
Confidence 4688888888754444455 5999996433211 011111111123368888888888888889999999965
Q ss_pred CCC-e----------EEEEEcc-ccccEEEEEEcCCEEEEEeCCCcEEEEEcCCCCce----------EEEeeecCCccE
Q 013881 301 ETL-Q----------CIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL----------EVTYTHNEEHGV 358 (434)
Q Consensus 301 ~~~-~----------~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~ 358 (434)
... + ....+.. ....|..++....+.+.-..||.|+.|-......+ ...........+
T Consensus 148 n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i 227 (406)
T 4d9s_A 148 NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 227 (406)
T ss_dssp CTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCE
T ss_pred CCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceE
Confidence 431 1 1122222 23367888888888888899999999965433221 111111111335
Q ss_pred EEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccccc-----------cc--ccCcEEEEEecCCcEEEEeCCCCCEEEE
Q 013881 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGK-----------IF--AKQEIRAIQLGPGGLFFTGDGTGQVRVW 425 (434)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~--~~~~v~~~~~spdg~l~s~~~dg~i~iw 425 (434)
..++.-. ...+.-..+|.|+.|-....-.+.. +. ....|..|+-... ..++-..||.|+.|
T Consensus 228 ~~va~G~-----~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~-hs~alt~~G~v~~w 301 (406)
T 4d9s_A 228 SMVACGW-----RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR-HTMALTSDGKLYGW 301 (406)
T ss_dssp EEEEECS-----SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEE
T ss_pred EEEEECC-----CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC-EEEEEcCCCeEEEe
Confidence 5554322 2445556899999997654322211 11 1234666665444 34444578888888
Q ss_pred Ecc
Q 013881 426 QWC 428 (434)
Q Consensus 426 d~~ 428 (434)
-..
T Consensus 302 G~n 304 (406)
T 4d9s_A 302 GWN 304 (406)
T ss_dssp ECC
T ss_pred eCC
Confidence 654
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.08 E-value=45 Score=29.63 Aligned_cols=188 Identities=11% Similarity=-0.011 Sum_probs=96.6
Q ss_pred CCcEEEEEEeC----C-EEEEEeCCCcEEEEEcCCCCCcc---ccceeecCccceEEEEEEC-CCEEEEecCCCcEEEEe
Q 013881 229 VGQVYAMAVGN----D-LLFAGTQDGAILAWKFNVTTNCF---EPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWN 299 (434)
Q Consensus 229 ~~~v~~l~~~~----~-~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd 299 (434)
...|.++..-+ + .++..+.+|.|+.-.+..-.... .....+.....-+..+..+ .+.|+..+..|.+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 45566654432 2 89999999999998876432110 1112233333333333333 46788888899998887
Q ss_pred CC--C---------CeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-------eEEEeeecCCccEE
Q 013881 300 LE--T---------LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-------LEVTYTHNEEHGVL 359 (434)
Q Consensus 300 ~~--~---------~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~ 359 (434)
.. . |.....+. ....|.++... +.+|+..+..|.++.-.+..... +..+........+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 76 3 11112232 23445555544 56899999999999887654321 11111111122344
Q ss_pred EEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc---------cccccccCcEEEEEecCC-c-EEEEeCCCC
Q 013881 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE---------RGKIFAKQEIRAIQLGPG-G-LFFTGDGTG 420 (434)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~v~~~~~spd-g-~l~s~~~dg 420 (434)
.+.... . +. .++..+.+|.+.-++...-.. ...+...+.|.++...+. . .+++.+.+|
T Consensus 253 ~~~~~~-~-~~-~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 253 GALIVD-D-DS-ELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEEEEC-T-TC-EEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEEEeC-C-Cc-cEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 443332 2 22 456666788877777654222 222333566777766554 3 666666555
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=74.72 E-value=44 Score=29.35 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=79.6
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEE---------EEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcC---CCCc-----
Q 013881 284 NKLYSGSMDNSIRVWNLETLQCIQ---------TLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFAT---DSGN----- 345 (434)
Q Consensus 284 ~~l~s~s~dg~i~vwd~~~~~~~~---------~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~---~~~~----- 345 (434)
+.+++.+.+|.|+--.+.+.+..+ .++.+...+..+..+ .+.|+..+..|.++-+... ....
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 467888999999888776543221 123333333344344 6788888888887666543 2211
Q ss_pred -eEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-------ccccccCcEEEEEecCCc-EEEEe
Q 013881 346 -LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER-------GKIFAKQEIRAIQLGPGG-LFFTG 416 (434)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~spdg-~l~s~ 416 (434)
+..+........+.++......++..+++..+..|.++--.+...... ..+...+.+..+....+. .|+..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~ 163 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 163 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEE
Confidence 001111223334555544332223347888899999999877543322 122234556555544444 77777
Q ss_pred CCCCCEEEEEccC
Q 013881 417 DGTGQVRVWQWCN 429 (434)
Q Consensus 417 ~~dg~i~iwd~~~ 429 (434)
+.+|.+..++..+
T Consensus 164 T~~G~~irf~~~~ 176 (307)
T 1zi0_A 164 SAEGKVVRFKESS 176 (307)
T ss_dssp ETTSEEEEEEGGG
T ss_pred CCCCcEEEEEHHH
Confidence 8888887777653
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=72.98 E-value=50 Score=29.25 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCEEEEecCCCcEEEEeCCCCe----EEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCC---CCc------eEE
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATD---SGN------LEV 348 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~---~~~------~~~ 348 (434)
.+.+++.+.+|.|+--.+.+.+ .-..++.....+..+..+ .+.|+..+..|.+.-+...+ ... +..
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Confidence 3467888889998876554211 111233333334444444 67888888889877665432 110 001
Q ss_pred EeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc--------ccccccCcEEEEEecCCc-EEEEeCCC
Q 013881 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER--------GKIFAKQEIRAIQLGPGG-LFFTGDGT 419 (434)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~~spdg-~l~s~~~d 419 (434)
.........+.++....+.....+++..+.+|.++-..+...... ..+...+.+..+....+. .|+..+.+
T Consensus 85 ~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~ 164 (323)
T 1wp5_A 85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHN 164 (323)
T ss_dssp TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETT
T ss_pred ccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 111222234555443332122346888899999999887543322 122334566555554444 77778888
Q ss_pred CCEEEEEccC
Q 013881 420 GQVRVWQWCN 429 (434)
Q Consensus 420 g~i~iwd~~~ 429 (434)
|.+..+...+
T Consensus 165 G~~irf~~~e 174 (323)
T 1wp5_A 165 GYALWFDESE 174 (323)
T ss_dssp SEEEEEEGGG
T ss_pred CcEEEEEHHH
Confidence 8888887653
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.12 E-value=65 Score=33.52 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcccccc
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKI 396 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 396 (434)
.+.++...++. .++++-+.|+++|+|++.+++.+...
T Consensus 237 ~~~~~~~~~~~---~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTY---NVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTT---TEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCC---cEEEEEECCCEEEEEECCCCCeEeee
Confidence 45555554433 38999999999999999998876653
No 371
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=66.95 E-value=95 Score=30.04 Aligned_cols=255 Identities=13% Similarity=0.090 Sum_probs=129.3
Q ss_pred EEEEECCCcEEEEECCCCceEEEEecC------------------------------CceEEEE---eCCCEEEEEc--C
Q 013881 165 LYSGSKDETVRVWDCASGQCAGVINLG------------------------------GEVGCMI---SEGPWIFIGV--T 209 (434)
Q Consensus 165 l~s~s~dg~v~iwd~~~~~~~~~~~~~------------------------------~~~~~~~---~~~~~l~~~~--~ 209 (434)
|.||+..|.|+|+-+.+++.+..+..- .+..+.. .++++|++-. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678899999999999999988887521 1111221 3678888865 4
Q ss_pred CcEEEEECCCCceE--EecCCCCcEEEEEEe--CC--EEEEEeCCCcEEE-----EEcCCCCCccccceeecCccceE-E
Q 013881 210 NFVKAWNTQTNTDL--SLSGPVGQVYAMAVG--ND--LLFAGTQDGAILA-----WKFNVTTNCFEPAASLKGHSLAV-V 277 (434)
Q Consensus 210 ~~i~~w~~~~~~~~--~~~~~~~~v~~l~~~--~~--~l~~g~~dg~i~v-----wd~~~~~~~~~~~~~~~~h~~~v-~ 277 (434)
..|...+++.-+.- ........+..+.|. |+ +++.+++...=.- ..++.. ..+.....+.+.+..| .
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~-~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDE-NSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTST-TEEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCCh-hhceEEEEEcCCccEEEE
Confidence 47777787776654 334456778888886 34 7777775421100 000111 0010001111111111 2
Q ss_pred EEEECCCE-EEEecCCCcEEEEeC---CCCeEEEEEccccccEEEEEEc----------CCEEEEEeCCC-cEEEEEcCC
Q 013881 278 SLVVGANK-LYSGSMDNSIRVWNL---ETLQCIQTLTEHTSVVMSLLCW----------DQFLLSCSLDK-TIKVWFATD 342 (434)
Q Consensus 278 ~l~~~~~~-l~s~s~dg~i~vwd~---~~~~~~~~~~~~~~~v~~l~~~----------~~~l~s~s~dg-~i~vwd~~~ 342 (434)
.+..++++ .+-.+.+|...++.- +.+..+..+. ....=..+.|+ +++-. ..+ .|.|.|.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~-~~e~D~~~vfn~~~ie~~vk~G~~~~---~~g~gv~ViD~~~ 307 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMM-RNERDWVVVFDIHAVEAAVKAGDFIT---LGDSKTPVLDGRK 307 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT-CSSCEEEEEEEHHHHHHHHHTTCCBC---CTTCCCCEEECSC
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcC-cccccEEEEecHHHHHHHHhcCCeEE---ECCCCeeEEcccc
Confidence 22223321 112222333222221 1111111111 01111223332 23221 122 478888776
Q ss_pred ----CCce-EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-------------cccccccCcEEE
Q 013881 343 ----SGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE-------------RGKIFAKQEIRA 404 (434)
Q Consensus 343 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~v~~ 404 (434)
...+ ..+......+ .+...|+ ++.+++.|--+.++.++|+..... ..+....-....
T Consensus 308 ~~~~~~~~~~~iP~pksPH---Gv~vsPD--Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 308 KDGKDSKFTRYVPVPKNPH---GCNTSSD--GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp BTTBCCSSEEEEEESSSCC---CEEECTT--SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred ccccCCceEEEEeCCCCCc---ceeeCCC--CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 2222 2222222222 3444444 334555555789999999985322 112223445678
Q ss_pred EEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 405 IQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 405 ~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.+|.++| ...|---|..|.-|++..
T Consensus 383 t~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 383 TTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEECCCCceEeeeeecceEEEEeccH
Confidence 8999999 777778999999999875
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.26 E-value=9.9 Score=37.79 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=31.9
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
.|.++.+ +..+|++-+.|.++|+|++.+++++.+....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 4665555 4789999999999999999999999887763
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.27 E-value=4.5 Score=43.21 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=33.6
Q ss_pred cEEEEEccCCCCEEEEEECCCcEEEEECCCCceEEEEecC
Q 013881 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191 (434)
Q Consensus 152 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 191 (434)
.|.+++..++..+|++-+.|+++|||++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455566678899999999999999999999999887653
No 374
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=64.62 E-value=1.1 Score=37.99 Aligned_cols=26 Identities=31% Similarity=0.660 Sum_probs=21.7
Q ss_pred ccccceeeeeccCccCC-CCCCccccc
Q 013881 32 DTRQKVCNYWRAGKCNR-FPCPYLHRE 57 (434)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-~~c~~l~~~ 57 (434)
..++..|.||..|.|.+ .-|||+|+.
T Consensus 67 ~~~~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 67 DGQLFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp TTCCSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CCCCeEcCccccCCCCCCCCCCccCCC
Confidence 44567999999999999 459999974
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=64.06 E-value=1.2e+02 Score=30.24 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCC-------CceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe--EEEEeCCCCc-cccc---cc
Q 013881 331 LDKTIKVWFATDS-------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS--VRFYDLPSFA-ERGK---IF 397 (434)
Q Consensus 331 ~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~-~~~~---~~ 397 (434)
..+.|.+.|+.+. .....+..+.....+..+.+..+ .++++...++. |.++++.+++ .... +.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp 393 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD----RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP 393 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS----CEEEEEEETTEEEEEEECEETTEECCCEEECCC
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC----EEEEEEEECCEEEEEEEECCCCceEEEeccCCC
Confidence 4677899998763 23344455555556666766543 37777777764 6777776654 2222 22
Q ss_pred ccCcEEEEEecCCc--EEEEeC---CCCCEEEEEcc
Q 013881 398 AKQEIRAIQLGPGG--LFFTGD---GTGQVRVWQWC 428 (434)
Q Consensus 398 ~~~~v~~~~~spdg--~l~s~~---~dg~i~iwd~~ 428 (434)
....+..+..++++ ++++.+ .-+.+..+|+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 394 YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 23567777777776 444433 33567777665
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=63.70 E-value=86 Score=28.38 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=83.7
Q ss_pred CCCEEEEecCCCcEEEEeCCC---------CeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCC---CC----
Q 013881 282 GANKLYSGSMDNSIRVWNLET---------LQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATD---SG---- 344 (434)
Q Consensus 282 ~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~---~~---- 344 (434)
+.+.+++.+.+|.|+--.+.+ +..-..++.....+..+..+ .+.|+..+..|.++-+...+ ..
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~ 85 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR 85 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC
Confidence 456788999999999765432 12223344333333333334 56788888888877665432 11
Q ss_pred --ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCccc-------ccccccCcEEEEEecCCc-EEE
Q 013881 345 --NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAER-------GKIFAKQEIRAIQLGPGG-LFF 414 (434)
Q Consensus 345 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~spdg-~l~ 414 (434)
.+..+........+.++..........+|+..+..|.++.-.+..+... ..+...+.+..+....+. .|+
T Consensus 86 G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~ 165 (370)
T 3l6v_A 86 GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVL 165 (370)
T ss_dssp CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEE
T ss_pred CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEE
Confidence 1111111223345665554433223347889999999999887554321 222234555555544444 777
Q ss_pred EeCCCCCEEEEEccC
Q 013881 415 TGDGTGQVRVWQWCN 429 (434)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (434)
..+.+|.+..++...
T Consensus 166 l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 166 LFASNGKTVRFGEST 180 (370)
T ss_dssp EEETTSEEEEEEGGG
T ss_pred EEeCCCeEEEEEccc
Confidence 777888877777643
No 377
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=60.83 E-value=85 Score=27.37 Aligned_cols=194 Identities=7% Similarity=0.005 Sum_probs=93.5
Q ss_pred cEEEEECCCCceEEecCCCCcEEEEEEeCCEEEEEe--C--CCcEEEEEcCCCCCccccceeecCccceEEEEEECCCEE
Q 013881 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT--Q--DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL 286 (434)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~--~--dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 286 (434)
.|+..++...+...+..... ..++...+.|+-.. . +..|...++... ....+..+.. ..+.+.++.|
T Consensus 89 ~Iy~i~~dg~~~~~l~~~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-----~~~~lt~~~~--~~~~~~g~~i 159 (302)
T 3s25_A 89 SLCRIKRNGHGSTVLDPDPC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGE-----EKKKIKNHYL--FTCNTSDRYF 159 (302)
T ss_dssp EEEEEETTSCCCEEEECSCE--EEEEEETTEEEEEEESSSSCEEEEEEETTSC-----CCEEEESSCC--CCSEEETTEE
T ss_pred eEEEEeCCCCcceEeecCCc--cEEEEeCCEEEEEeecCCCCceEEEEECCCC-----CeEEEeCCCc--eEeeEECCEE
Confidence 56667777666554443322 34555566555443 3 344555555432 1222333322 3456777776
Q ss_pred EEec-CCCcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeCCC--cEEEEEcCCCCceEEEeeecCCccEEEEEe
Q 013881 287 YSGS-MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (434)
Q Consensus 287 ~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 363 (434)
+-.+ ....|.+-++..+.....+.+.. . ..+.+.+++|+-...++ .|..-++..... ..+ ... .+.. +
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L-t~~---~~~~--~ 230 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVL-TEA---NIEH--Y 230 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EEC-SCS---CEEE--E
T ss_pred EEEeCCCceEEEEECCCCCEEEEeCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEE-eCC---Ccce--E
Confidence 6444 46889999988766544443211 1 22334577776665443 455555543332 222 111 1222 3
Q ss_pred ccCCCCCcEEEEE--eCCCeEEEEeCCCCcccccccccCcEEEEEecCCcEEEEeCCCCCEEEEEc
Q 013881 364 MPDSEGKPVLLCS--CNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQW 427 (434)
Q Consensus 364 ~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~spdg~l~s~~~dg~i~iwd~ 427 (434)
.|... .|.-+ ...+.|..-++.... ...+.. ..+..+....+-...+--..+.|..-++
T Consensus 231 ~~~g~---~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~-~~~~~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 231 NVYGS---LIFYQRGGDNPALCVVKNDGTG-FKELAK-GEFCNINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEETT---EEEEEECSSSCEEEEEETTSCC-CEEEEE-SCEEEEEECSSEEEEEETTTCCEEEEES
T ss_pred EECCC---EEEEEECCCCcEEEEEECCCCc-cEEeeC-CccceEEEeCCEEEEEECCCCeEEEEEC
Confidence 33332 44433 234567777765432 222222 2355555543324455545566555443
No 378
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=60.25 E-value=97 Score=27.83 Aligned_cols=96 Identities=9% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCCCccccceeecCcc-ceEEEEEEC--CCEEEEec-----------------CCCcEEEEeCCCCeEEE
Q 013881 248 DGAILAWKFNVTTNCFEPAASLKGHS-LAVVSLVVG--ANKLYSGS-----------------MDNSIRVWNLETLQCIQ 307 (434)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s-----------------~dg~i~vwd~~~~~~~~ 307 (434)
+..|.+|++.........+..+.+.. .....+.++ +.+.++.. ..|.|..+|.. + +.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EE
Confidence 46777877766543333344443321 234555554 44444432 12456666653 2 22
Q ss_pred EEccccccEEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCce
Q 013881 308 TLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNL 346 (434)
Q Consensus 308 ~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~ 346 (434)
.+...-..-+.++++ ++.|..+ +..+.|..|++.....+
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l 256 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL 256 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence 333333445778888 4555555 45789999999754433
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.10 E-value=33 Score=36.52 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=24.9
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEEc
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 310 (434)
..++++-+.|+++|+|++.+++++.+..
T Consensus 249 ~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 249 YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4689999999999999999999988754
No 380
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=50.93 E-value=1.6e+02 Score=27.44 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCeEEEEEccccccEEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceEEEeeec------CCccEEEEEeccCCCCCc
Q 013881 300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN------EEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 371 (434)
+..+-.+..+...-.....|++. ++++++-...+.|++++..++.......... .......+++.|+-....
T Consensus 13 ~~~gf~~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 13 KSENFDKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp CCTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCCCeEEEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCC
Q ss_pred EEEEEeC-------------CCeEEEEeCCCC----cccccccc------cCcEEEEEecCCc-EEEEeCCCC
Q 013881 372 VLLCSCN-------------DNSVRFYDLPSF----AERGKIFA------KQEIRAIQLGPGG-LFFTGDGTG 420 (434)
Q Consensus 372 ~l~~~~~-------------dg~i~iwd~~~~----~~~~~~~~------~~~v~~~~~spdg-~l~s~~~dg 420 (434)
.|..... ...|.-|++... .....+.. ......|+|.||| ++++.++.+
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.89 E-value=1.4e+02 Score=26.34 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=101.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCC-----ccccc---eeecCccceEEEE-EEC----CCEEEEecCCCcEEEEeCCCCe---
Q 013881 241 LLFAGTQDGAILAWKFNVTTN-----CFEPA---ASLKGHSLAVVSL-VVG----ANKLYSGSMDNSIRVWNLETLQ--- 304 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~-----~~~~~---~~~~~h~~~v~~l-~~~----~~~l~s~s~dg~i~vwd~~~~~--- 304 (434)
.|+.-+..|.++......-.. .-.++ ..+. ....|.++ ... ...++..+.+|.|+--.+....
T Consensus 55 ~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~ 133 (327)
T 3uc1_A 55 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR 133 (327)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc
Confidence 666667777776665432110 00111 1122 23345444 333 4589999999999998875422
Q ss_pred ----EEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcC--CCCce------EEEeeecCCccEEEEEeccCCCCCc
Q 013881 305 ----CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFAT--DSGNL------EVTYTHNEEHGVLALCGMPDSEGKP 371 (434)
Q Consensus 305 ----~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
....+......+..+... .+.|+..+..|.+..+... +-... ...........+.++...... .
T Consensus 134 r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~---~ 210 (327)
T 3uc1_A 134 SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG---T 210 (327)
T ss_dssp SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT---C
T ss_pred cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC---C
Confidence 222344433334444444 6788889999999888776 22110 011112223446665554322 2
Q ss_pred EEEEEeCCCeEEEEeCCCCcccc---------cccc-cCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 372 VLLCSCNDNSVRFYDLPSFAERG---------KIFA-KQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 372 ~l~~~~~dg~i~iwd~~~~~~~~---------~~~~-~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
.++..+..|.++.-.+....... .+.. .+.+..+....+. .++..+.+|.+.-++..+
T Consensus 211 ~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 211 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 68888899999988875543321 1111 3345544443333 666666777777776543
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.78 E-value=1.3e+02 Score=25.71 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC---ceEEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCcc-------
Q 013881 323 DQFLLSCSLDKTIKVWFATDSG---NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAE------- 392 (434)
Q Consensus 323 ~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------- 392 (434)
+.+++..+.+|.++-..+.+.. .-...........+..+...... ..++..+..|.+..+....-..
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~---~~ill~T~~G~~~r~~~~eip~~gR~a~G 156 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDE---THILLFTKKGRVARFSVREVPPSTPGARG 156 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSS---CEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCC---CEEEEEECCCEEEEEEhhhCCCcCCCCCC
Confidence 3577777888888877765432 00011111222334444333222 2577777888888776543221
Q ss_pred --cccccccCcEEEEEecCCc-EEEEeCCCCCEEEEEccC
Q 013881 393 --RGKIFAKQEIRAIQLGPGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 393 --~~~~~~~~~v~~~~~spdg-~l~s~~~dg~i~iwd~~~ 429 (434)
...+...+.|.++...+++ .++..+..|.++...+..
T Consensus 157 v~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 157 VQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 1223335566666555555 788888888888877653
No 383
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=46.23 E-value=2.1e+02 Score=27.54 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEEc-------------------ccc----c-c-EEEEEEcC--CEEEEEeC---C
Q 013881 283 ANKLYSGSMDNSIRVWNLETLQCIQTLT-------------------EHT----S-V-VMSLLCWD--QFLLSCSL---D 332 (434)
Q Consensus 283 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~----~-~-v~~l~~~~--~~l~s~s~---d 332 (434)
..+++.|+.||.++.+|.. ++.+..+- .|. + + +..+.+.+ +.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3579999999999999977 55433221 121 1 1 22233333 33444443 3
Q ss_pred CcEEEEEcCCCCceEEEeeecCC--------ccEEEEEeccCCCCCcEEEEEeC------CCeEEEEeCCCCcccccccc
Q 013881 333 KTIKVWFATDSGNLEVTYTHNEE--------HGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSFAERGKIFA 398 (434)
Q Consensus 333 g~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 398 (434)
..++..|+.+......+...... -.-..+.... .++.+++.|+. ...|+|.|+.++.++.++..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~--~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~ 241 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLH--NGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEV 241 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECT--TSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEE
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEec--CCCEEEEEccccCCCCCccEEEEEECCCCceEEEEec
Confidence 45777777765433333332210 0011122222 23345555542 35899999999998877653
Q ss_pred c------Cc---EEEEEecCCc---EEEEeCCCCCEEEEEccCCc
Q 013881 399 K------QE---IRAIQLGPGG---LFFTGDGTGQVRVWQWCNGP 431 (434)
Q Consensus 399 ~------~~---v~~~~~spdg---~l~s~~~dg~i~iwd~~~g~ 431 (434)
. .. +..+....|+ .+.+|+..|.|.-+|+....
T Consensus 242 ~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 242 TGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp CCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 1 12 3333334455 78899999999888887653
No 384
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.24 E-value=1.6e+02 Score=25.14 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=99.9
Q ss_pred EEEEEeCCCcEEEEE---cCCCCCccccceeecCccceEEEEEEC---CCEEEEecCCCcEEEEeCCCC------eEEEE
Q 013881 241 LLFAGTQDGAILAWK---FNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETL------QCIQT 308 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd---~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~------~~~~~ 308 (434)
.|+.-+..|.++--. +..... .-+ +. ....|..+... ...++..+.+|.|+...+... .....
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~--~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSK--VSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEE--CCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred EEEEEcCCCeEEEEEhhhCccCcc--ccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 666667777766543 322211 111 32 24455555433 458999999999999987553 22222
Q ss_pred EccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCce------EEEeeecCCccEEEEEeccCCCCCcEEEEEeCCCe
Q 013881 309 LTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNL------EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (434)
Q Consensus 309 ~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 381 (434)
++.....+...... .+.++..+..|.+..+...+-... ...........+..+...... ..++..+..|.
T Consensus 112 lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~---~~ll~~T~~G~ 188 (276)
T 3no0_A 112 LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE---PYLLVITAKGR 188 (276)
T ss_dssp CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC---SEEEEEETTSC
T ss_pred cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC---CEEEEEeCCCc
Confidence 33333333333333 568899999999988876432111 011112223445555444322 26788889999
Q ss_pred EEEEeCCCCcccc-------cccccCcEEEEEecCCc-EEEEeCCCCCEEE--EEccC
Q 013881 382 VRFYDLPSFAERG-------KIFAKQEIRAIQLGPGG-LFFTGDGTGQVRV--WQWCN 429 (434)
Q Consensus 382 i~iwd~~~~~~~~-------~~~~~~~v~~~~~spdg-~l~s~~~dg~i~i--wd~~~ 429 (434)
++...+....... .+...+.+..+....+. .++..+.+|.+.. ++..+
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9988875433222 12234455554433333 6777777888877 77654
No 385
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.35 E-value=1.8e+02 Score=25.34 Aligned_cols=185 Identities=9% Similarity=0.069 Sum_probs=99.0
Q ss_pred EEEEEeCCCcEEEEEcCC---CCC--ccccc---eeecCccceEEEEEE----C-CCEEEEecCCCcEEEEeCCC-----
Q 013881 241 LLFAGTQDGAILAWKFNV---TTN--CFEPA---ASLKGHSLAVVSLVV----G-ANKLYSGSMDNSIRVWNLET----- 302 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~---~~~--~~~~~---~~~~~h~~~v~~l~~----~-~~~l~s~s~dg~i~vwd~~~----- 302 (434)
.|+..+..|.++-+.... ... .-.++ ..+. ....|.++.. . ..+++..+..|.++-..+..
T Consensus 55 ~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~ 133 (307)
T 1zi0_A 55 HILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 133 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC
T ss_pred EEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc
Confidence 777777888876665432 110 00111 1122 2334555433 2 34789999999999987642
Q ss_pred --CeEEEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCCCce------EEEeeecCCccEEEEEeccCCCCCcEE
Q 013881 303 --LQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNL------EVTYTHNEEHGVLALCGMPDSEGKPVL 373 (434)
Q Consensus 303 --~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (434)
+.....+..+..-+...... .+.++..+.+|.+..+...+-... ...........+..+...... ..+
T Consensus 134 r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~---~~l 210 (307)
T 1zi0_A 134 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD---GAI 210 (307)
T ss_dssp TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS---CEE
T ss_pred cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC---CEE
Confidence 22222333443333333334 567888999999888876432111 011122233456666544322 267
Q ss_pred EEEeCCCeEEEEeCCCCccc---------ccccc-cCcEEEEEe-cCCcEEEEeCCCCCEEEEEccC
Q 013881 374 LCSCNDNSVRFYDLPSFAER---------GKIFA-KQEIRAIQL-GPGGLFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 374 ~~~~~dg~i~iwd~~~~~~~---------~~~~~-~~~v~~~~~-spdg~l~s~~~dg~i~iwd~~~ 429 (434)
++.+..|.++-.++...... ..+.. .+.+-.+.. .++..++..+.+|.+.-+++.+
T Consensus 211 l~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 88889999998877443211 11211 245544444 3333555666677766666543
No 386
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=39.87 E-value=3.8 Score=20.86 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=11.2
Q ss_pred eeccCccCCCCCC
Q 013881 40 YWRAGKCNRFPCP 52 (434)
Q Consensus 40 ~~~~~~~~~~~c~ 52 (434)
-|--|||-|+-|+
T Consensus 18 dwccgrcirnecr 30 (32)
T 4b2v_A 18 DWCCGRCIRNECR 30 (32)
T ss_dssp CCCSSEEETTEEE
T ss_pred chhhhHHHHhhhc
Confidence 4889999999886
No 387
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=39.79 E-value=1.4e+02 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=18.4
Q ss_pred cEEEEEEc--CC-EEEEEeCCCcEEEEEcC
Q 013881 315 VVMSLLCW--DQ-FLLSCSLDKTIKVWFAT 341 (434)
Q Consensus 315 ~v~~l~~~--~~-~l~s~s~dg~i~vwd~~ 341 (434)
.-..|++. +. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 34567766 32 47777888999999653
No 388
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.29 E-value=2.5e+02 Score=25.47 Aligned_cols=135 Identities=11% Similarity=0.152 Sum_probs=76.5
Q ss_pred cEEEEeCCCC--eEEEEEccc------cccEEEEEEc---------CCEEEEEe-CCCcEEEEEcCCCCceEEEeeecC-
Q 013881 294 SIRVWNLETL--QCIQTLTEH------TSVVMSLLCW---------DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNE- 354 (434)
Q Consensus 294 ~i~vwd~~~~--~~~~~~~~~------~~~v~~l~~~---------~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~- 354 (434)
+|.+||+.+. +.++++.-. ...+..+.++ +.++..+. ....|.|+|+.+++..+.......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888888 887776532 3446666666 22333333 467899999988766554421100
Q ss_pred ---------------CccEEEEEeccCCCC-CcEEEEEeCCCeEEEEeCCC-----Cccccccc---cc---CcEEEEEe
Q 013881 355 ---------------EHGVLALCGMPDSEG-KPVLLCSCNDNSVRFYDLPS-----FAERGKIF---AK---QEIRAIQL 407 (434)
Q Consensus 355 ---------------~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~---~~---~~v~~~~~ 407 (434)
...+..++.+|+..+ .+.|.-....+ -++|.+++ ......+. .+ ..-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 135667777765322 33444443332 23444332 11111111 12 23445677
Q ss_pred c-CCc-EEEEeCCCCCEEEEEccC
Q 013881 408 G-PGG-LFFTGDGTGQVRVWQWCN 429 (434)
Q Consensus 408 s-pdg-~l~s~~~dg~i~iwd~~~ 429 (434)
. .+| ++++--....|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 678 788888889999999875
No 389
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=35.68 E-value=2.3e+02 Score=25.06 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=44.2
Q ss_pred eEEEEEeC-CcEEEecCCCeEEEEeCCCCceEEEEec---CccccEEEEEccCC---CCEEEEEEC----C----CcEEE
Q 013881 112 ILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLE---GHQKVVSGITLPSG---SDKLYSGSK----D----ETVRV 176 (434)
Q Consensus 112 i~c~~~~~-~~~~~g~~d~~i~vwd~~~~~~~~~~l~---~h~~~V~~l~~s~~---~~~l~s~s~----d----g~v~i 176 (434)
-..++|.+ +.++.+..++.|++++. ++.+.+..+. ........|+|+|+ +..|+.+.. + ..|..
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 35677754 56777778899999974 4423333322 22356889999997 555554433 3 56777
Q ss_pred EECCCC
Q 013881 177 WDCASG 182 (434)
Q Consensus 177 wd~~~~ 182 (434)
|+....
T Consensus 110 ~~~~~~ 115 (354)
T 3a9g_A 110 GRLDGS 115 (354)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 877654
No 390
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=34.32 E-value=2.3e+02 Score=24.53 Aligned_cols=206 Identities=8% Similarity=0.107 Sum_probs=109.0
Q ss_pred eCCcEEEec--CCCeEEEEeCCCCceEEEEecCccccEEEEEccCCCCEEEEEECC--------------CcEEEEECCC
Q 013881 118 VQGNCMYGE--KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--------------ETVRVWDCAS 181 (434)
Q Consensus 118 ~~~~~~~g~--~d~~i~vwd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s~s~d--------------g~v~iwd~~~ 181 (434)
..+.+++.. .++.|+..+.+.. . ...+... . +--+++++++|+-+... ..|+..++..
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~-~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGS-N-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSC-S-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred eCCEEEEEeCCCCceEEEEcCCCC-C-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 344444432 3566777776543 2 2222211 1 23457888888766542 4678888877
Q ss_pred CceEEEEecCCceEEEEeCCCEEEEEc---C--CcEEEEECCCCceEEecCCCCcEEEEEEeCCEEE-EEeCCCcEEEEE
Q 013881 182 GQCAGVINLGGEVGCMISEGPWIFIGV---T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF-AGTQDGAILAWK 255 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~--~~i~~w~~~~~~~~~~~~~~~~v~~l~~~~~~l~-~g~~dg~i~vwd 255 (434)
++....... ....+...+..|+-.. + ..|...++.......+..+.. ..+.+....|+ +......|.+.+
T Consensus 98 ~~~~~l~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~ 173 (302)
T 3s25_A 98 HGSTVLDPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYD 173 (302)
T ss_dssp CCCEEEECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEE
T ss_pred CcceEeecC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEE
Confidence 764433322 2234555666666543 3 366777777655555554433 23455555444 444467788888
Q ss_pred cCCCCCccccceeecCccceEEEEEECCCEEEEecCC--CcEEEEeCCCCeEEEEEccccccEEEEEEcCCEEEEEeC--
Q 013881 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD--NSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSL-- 331 (434)
Q Consensus 256 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~-- 331 (434)
+.... ....+.+.. . ..+.+.+++|+-.... ..|..-++.... ...+.. ..+..+.+.+++|.-+..
T Consensus 174 l~g~~----~~~l~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~~~~~~g~~Iy~~~~~~ 244 (302)
T 3s25_A 174 TASQS----EALFYDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIEHYNVYGSLIFYQRGGD 244 (302)
T ss_dssp TTTTE----EEEEECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEEEEEEETTEEEEEECSS
T ss_pred CCCCC----EEEEeCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcceEEECCCEEEEEECCC
Confidence 76542 112222211 1 1234567766544332 367666766544 334432 334567777887776533
Q ss_pred CCcEEEEEcCC
Q 013881 332 DKTIKVWFATD 342 (434)
Q Consensus 332 dg~i~vwd~~~ 342 (434)
...|..-++..
T Consensus 245 ~~~i~~~~~DG 255 (302)
T 3s25_A 245 NPALCVVKNDG 255 (302)
T ss_dssp SCEEEEEETTS
T ss_pred CcEEEEEECCC
Confidence 34555555543
No 391
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=31.55 E-value=2.6e+02 Score=24.34 Aligned_cols=145 Identities=11% Similarity=0.142 Sum_probs=81.8
Q ss_pred EEEEEeCCCcEEEEEcCCCCCc--------cccceeecCccceEEEE-EE----CCCEEEEecCCCcEEEEeCCCC----
Q 013881 241 LLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSL-VV----GANKLYSGSMDNSIRVWNLETL---- 303 (434)
Q Consensus 241 ~l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~~~h~~~v~~l-~~----~~~~l~s~s~dg~i~vwd~~~~---- 303 (434)
.++..+..|.++-+....-... ......+... ..|..+ .. ..++++..+..|.++...+...
T Consensus 60 ~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r 138 (312)
T 1suu_A 60 YLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK 138 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--
T ss_pred EEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC
Confidence 7777788888877765421100 0001122222 234333 33 2457888999999999887432
Q ss_pred ---eEEEEEccccccEEEEEE-c-CCEEEEEeCCCcEEEEEcCCCCce------EEEeeecCCccEEEEEeccCCCCCcE
Q 013881 304 ---QCIQTLTEHTSVVMSLLC-W-DQFLLSCSLDKTIKVWFATDSGNL------EVTYTHNEEHGVLALCGMPDSEGKPV 372 (434)
Q Consensus 304 ---~~~~~~~~~~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (434)
.....+.. .+.+..+.. . ++.++..+.+|.+..+...+-... ...........+..+...... ..
T Consensus 139 ~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~---~~ 214 (312)
T 1suu_A 139 SRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN---PY 214 (312)
T ss_dssp --CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC---SE
T ss_pred CCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC---Ce
Confidence 22233443 344444433 3 567999999999999987542111 111112223345555444222 25
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 013881 373 LLCSCNDNSVRFYDLPSF 390 (434)
Q Consensus 373 l~~~~~dg~i~iwd~~~~ 390 (434)
+++.+..|..+..++...
T Consensus 215 l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 215 LLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGS
T ss_pred EEEEECCCceEEEEHHHh
Confidence 778889999999988653
No 392
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=30.70 E-value=2.9e+02 Score=24.59 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=27.0
Q ss_pred cccEEEEEccCCCCEEEEEECCCcEEEEECCCCce
Q 013881 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (434)
Q Consensus 150 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (434)
-..-..|+|.||++++++--..|.|++++..+++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 34567899999999777765589999998766553
No 393
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=30.48 E-value=8.1 Score=17.69 Aligned_cols=7 Identities=71% Similarity=1.521 Sum_probs=5.3
Q ss_pred ccCccCC
Q 013881 42 RAGKCNR 48 (434)
Q Consensus 42 ~~~~~~~ 48 (434)
|.|+|+|
T Consensus 14 rtgkcqr 20 (21)
T 8tfv_A 14 RTGKCQR 20 (26)
T ss_dssp GGTEEEE
T ss_pred cccceec
Confidence 6788876
No 394
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.98 E-value=14 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.801 Sum_probs=19.6
Q ss_pred ceeeeeccCccCC-CCCCccccc
Q 013881 36 KVCNYWRAGKCNR-FPCPYLHRE 57 (434)
Q Consensus 36 ~~~~~~~~~~~~~-~~c~~l~~~ 57 (434)
+.|.+|..|.|.. .-|.|=|.+
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred ccCcccCcCCCCCCCccCCcCCH
Confidence 8999999999988 679998864
No 395
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=25.96 E-value=24 Score=17.26 Aligned_cols=8 Identities=63% Similarity=1.531 Sum_probs=6.7
Q ss_pred cCccCCCC
Q 013881 43 AGKCNRFP 50 (434)
Q Consensus 43 ~~~~~~~~ 50 (434)
-|+|-|||
T Consensus 7 yg~cr~~p 14 (26)
T 1as5_A 7 YGKCRRYP 14 (26)
T ss_dssp TTCCCCCT
T ss_pred ccccccCC
Confidence 38899998
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.94 E-value=1.6e+02 Score=28.46 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=29.1
Q ss_pred eEEEEeCCCCceEEEEecCc-cccEEEEEccCCCCEEEEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGS 169 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~l~s~s 169 (434)
.|..++..++ ++...+.+. ...++.++|+||++.|+..-
T Consensus 510 ~v~~~dp~tG-el~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 510 QMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCC-eEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 6777777777 666666543 35799999999999887663
No 397
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=25.25 E-value=3.1e+02 Score=23.09 Aligned_cols=142 Identities=6% Similarity=-0.090 Sum_probs=76.5
Q ss_pred EEEEecCCCcEEEEeCCCCeE-EEEEccccccEEEEEEc-CCEEEEEeCCCcEEEEEcCCC---CceE----EEeeecCC
Q 013881 285 KLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDS---GNLE----VTYTHNEE 355 (434)
Q Consensus 285 ~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~---~~~~----~~~~~~~~ 355 (434)
.+++.+.+|.|+--....... ...++.....+..+... .+.|+..+..|.++-+...+- ...- ........
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 355667777776655433110 11233333334444344 567778888888776654321 1100 11112223
Q ss_pred ccEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCCCc-------ccccccccCcEEEEEec-CCc-EEEEeCCCCCEEEEE
Q 013881 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFA-------ERGKIFAKQEIRAIQLG-PGG-LFFTGDGTGQVRVWQ 426 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~v~~~~~s-pdg-~l~s~~~dg~i~iwd 426 (434)
..+.++.... + ..+|+..+..|.++...+.... ....+...+.+..+... .++ .|+..+.+|.+..+.
T Consensus 84 e~Iv~~~~~~--~-~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 84 ATVDHMLMES--D-DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CCEEEEECCC--T-TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeC--C-CCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 4566664322 2 2367788999999999875432 22222224455554444 233 788888889888888
Q ss_pred ccC
Q 013881 427 WCN 429 (434)
Q Consensus 427 ~~~ 429 (434)
+.+
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 398
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=22.40 E-value=5.4e+02 Score=24.97 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=49.1
Q ss_pred cEEEEeCCC----Ce-EEEEEccccccE-EEEEEcCCEEEEEe-CCCcEEEEEcCCCCc-----e----E-EEeeecCCc
Q 013881 294 SIRVWNLET----LQ-CIQTLTEHTSVV-MSLLCWDQFLLSCS-LDKTIKVWFATDSGN-----L----E-VTYTHNEEH 356 (434)
Q Consensus 294 ~i~vwd~~~----~~-~~~~~~~~~~~v-~~l~~~~~~l~s~s-~dg~i~vwd~~~~~~-----~----~-~~~~~~~~~ 356 (434)
.|.+.|.+. +. .+..+....++- ..++.+|+++++++ .+.++.++|++.... + . .........
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 477888776 22 223332222221 23334477777665 488999999874211 0 0 011111123
Q ss_pred cEEEEEeccCCCCCcEEEEEeCCCeEEEEeCCC
Q 013881 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (434)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 389 (434)
..+-.+|.+. + ....+-.-|..|.-|++..
T Consensus 379 GPlHt~Fd~~--G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGR--G-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSS--S-EEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCC--C-ceEeeeeecceEEEEeccH
Confidence 3444555432 2 3445555899999999965
No 399
>1bhu_A SMPI, metalloproteinase inhibitor; signal; NMR {Streptomyces nigrescens} SCOP: b.11.1.3
Probab=20.79 E-value=38 Score=22.11 Aligned_cols=13 Identities=46% Similarity=0.932 Sum_probs=9.6
Q ss_pred ccCccCCCCCCcc
Q 013881 42 RAGKCNRFPCPYL 54 (434)
Q Consensus 42 ~~~~~~~~~c~~l 54 (434)
|.-.|-||||--.
T Consensus 60 rkvtcvrfpcyqy 72 (102)
T 1bhu_A 60 RKVTCVRFPCYQY 72 (102)
T ss_dssp CCCCCSSSCCCSS
T ss_pred eeeEEEeecceee
Confidence 5567999999543
No 400
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.43 E-value=2.3e+02 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred eEEEEeCCCCceEEEEecCcc-ccEEEEEccCCCCEEEEE
Q 013881 130 FLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSG 168 (434)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s~ 168 (434)
.+.+.+..++ ++.+.+.++. ..++.++|+||++.|+..
T Consensus 510 ~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4555566676 6767676654 689999999999887765
No 401
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.09 E-value=1.5e+02 Score=27.95 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEeCCCCce-------EEEEecC--ccccEEEEEccCCCCEEEEEECCCcEEE
Q 013881 122 CMYGEKCKFLHSWTVGDGFK-------LLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRV 176 (434)
Q Consensus 122 ~~~g~~d~~i~vwd~~~~~~-------~~~~l~~--h~~~V~~l~~s~~~~~l~s~s~dg~v~i 176 (434)
++.|+.+|.|+=.-+..... .+..+.- ...+|..|.++++..+|+.++.++.++|
T Consensus 424 ~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 424 MFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Done!