BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013882
(434 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 16/253 (6%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAE-LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
++ RFF+VY +W+WP P++LC I E LG VW+P+ RDK H MPIITPAYP MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPAYPSMNST 358
Query: 61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
YNVS STL++M +F G I ++E + W L E FF Y Y+++D + N +D
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418
Query: 121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD----TSKPCAHC-AFFMGLQRK 175
W+GW+ES+LR L +E K PYP + + + P C +FFMGL
Sbjct: 419 SRKWEGWIESKLRFLISNLESTPKMKFAV-PYPKGFTNNLHKANNPDQICTSFFMGLSFN 477
Query: 176 PGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG---MEICVSHIRRKQIPPYVFPEGYKR 232
+ D+ +V EF I ++ +P M+I V +I++KQ+P +V EG
Sbjct: 478 FSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEG--- 534
Query: 233 TRHPRLASQQRSS 245
P +++RSS
Sbjct: 535 PEEPVKTTKKRSS 547
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 139/251 (55%), Gaps = 8/251 (3%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E+ L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVSTST VM+++F+ G + +E+ K+ WS L EP FF+ YR+Y+ + A+ ++
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAH----CAFFMGL---QR 174
L W G VES++R L +ER+ + L H P + + +F+G+ +
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRV 445
Query: 175 KPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTR 234
+ E V +DI+ + N K GM+I +H+++KQ+ Y+ E ++ +
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYLPAEILQKKK 505
Query: 235 HPRLASQQRSS 245
L+ RSS
Sbjct: 506 KQSLSDVNRSS 516
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I E+ L+KA+WS LFE FF+ Y++Y+ + A+
Sbjct: 328 NVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQH 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L Q P P E D + +GL +KP
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDMEEFRTMWVIGLGL-KKP 446
Query: 177 --GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHIRRKQI 221
E++ +DI+ + ++ ++N MF + GM+I H+RRK++
Sbjct: 447 DNSEILSIDLTYDIQSFTDTVYRQAVNSKMF-EMGMKITAMHLRRKEL 493
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 132/229 (57%), Gaps = 12/229 (5%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I E+ LNKA+WS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQH 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGL-QRK 175
L W G VES++R L +E++ + L Q P P E D K + +GL +K
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETAD--KEEFRTMWVIGLVLKK 445
Query: 176 P--GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHIRRKQI 221
P E++ +DI+ + ++ +IN MF + M+I H+RRK++
Sbjct: 446 PENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIAAMHLRRKEL 493
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 140/253 (55%), Gaps = 13/253 (5%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E+ L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVSTST VM+++F+ G + +E+ K+ WS L EP FF+ YR+Y+ + A+ ++
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCA------FFMGL--- 172
L W G VES++R L +ER+ + L H P + + H A +F+G+
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKE--HHKANNYVSMWFLGIIFR 443
Query: 173 QRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKR 232
+ + E V +DI+ + N K GM+I +H+++KQ+ Y+ P +
Sbjct: 444 RVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL-PAEILQ 502
Query: 233 TRHPRLASQQRSS 245
+ L+ RSS
Sbjct: 503 KKKKSLSDVSRSS 515
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 18 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y++Y+ + A
Sbjct: 78 NVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 137
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L Q P P E ++ K + +GL K
Sbjct: 138 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSE--NSEKEEFRTMWVIGLVFKK 195
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQ----IPPYVFP 227
E E D+ ++ F + +IN MF + ++I H++RKQ +P +V P
Sbjct: 196 ME-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ETEIKIAAMHVKRKQLHQLLPSHVLP 253
Query: 228 EGYKRT 233
+ K +
Sbjct: 254 KKKKHS 259
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 136/248 (54%), Gaps = 21/248 (8%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L Q P P E D + + +GL K
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREE--FRTMWVIGLVFKK 445
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQ----IPPYVFP 227
E E D+ ++ F + +IN MF + M+I H++RKQ +P +V
Sbjct: 446 TE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIAAMHVKRKQLHQLLPSHVL- 502
Query: 228 EGYKRTRH 235
KR +H
Sbjct: 503 --QKRKKH 508
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L Q P P E D K + +GL K
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KEEFRTMWVIGLVFKK 445
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQI 221
E E D+ ++ F + +IN MF + M+I H++RKQ+
Sbjct: 446 TE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVKRKQL 493
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L Q P P E D K + +GL K
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KEEFRTMWVIGLVFKK 445
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQI 221
E E D+ ++ F + +IN MF + M+I H++RKQ+
Sbjct: 446 TE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVKRKQL 493
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 250 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 309
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
NVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y++Y+ + A
Sbjct: 310 NVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 369
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
L W G VES++R L +E++ + L + P P E ++ K + +GL K
Sbjct: 370 LEWVGLVESKIRILVGSLEKNEFITLAHVNPRSFPAPSENME--KEEFRTMWVIGLVFKK 427
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQI----PPYVFP 227
E E D+ ++ F + +IN MF + M+I H++RKQ+ P +V P
Sbjct: 428 ME-NSENLSVDLTYDIQSFTDTVDRQAINSKMF-ETEMKIAAMHVKRKQLHQLQPSHVSP 485
Query: 228 EGYKRT 233
+ K +
Sbjct: 486 KKKKHS 491
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
+V +FF +YT W WP PV+L +I++ L VW+PR D+ H MP+ITPAYP M +++
Sbjct: 254 IVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYPSMCATH 313
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA---NA 118
N+++ST +V++ + G++I +E+ K WS LFE + FF Y+ YL V VAA +A
Sbjct: 314 NITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLCV--VAASIDSA 371
Query: 119 DDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT 159
++ W G++ES+LRQL L +E G HPY ++ +T
Sbjct: 372 EEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDFSNT 411
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
++V++FFR+ W WP P++L I++ L +W+P+ DK H MPIITPAYP M ++
Sbjct: 253 VIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCAT 312
Query: 61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
+N++ ST +++ + I +++ + WSALF+ + FF Y++YL + A A+
Sbjct: 313 HNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITAAAKTAEA 372
Query: 121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPY 152
L W G VES+LR L +E L HP+
Sbjct: 373 QLKWAGLVESKLRHLVTRLELVDAIAL-AHPF 403
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIITPAYP NS+Y
Sbjct: 265 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 324
Query: 62 NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANA 118
NVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y+ Y+ +++A A
Sbjct: 325 NVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKYK-YVFYNLLAMFA 380
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
++V +FF +Y+ W WP PV+L I++ L VW+PR D+ H MP+ITPAYP M ++
Sbjct: 253 VIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCAT 312
Query: 61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANAD- 119
+N+++ST +V++ +FQ G + ++ + K WS L E + FF Y+ YL IVAA
Sbjct: 313 HNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLC--IVAATRST 370
Query: 120 --DLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEY 156
+ L + G VES+LR L +E G HPY +
Sbjct: 371 YAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF 408
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
++++RFF + + W WP PV+L I++ L VW+P+ +D++H MP+ITPAYP M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
+N++ ST +V++ +F G I ++ NK W+ LFE FF Y+ YL++ +D+
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 121 L-LAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEY 156
L W G VES++R L + +E K+ HP+ +
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEVLAGIKI-AHPFTKPF 409
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 2 LVSRFFRVYTMWRW-PNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
L+ +FF+VY+ W W PVML D+ N + K + I+TPA P N++
Sbjct: 233 LLEKFFQVYSSWDWLRTPVMLGTNDDF-----------NDKKKEGVIQILTPASPSENAA 281
Query: 61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQ-WSALFEPYLFFESYRNYLQVDIVAANAD 119
++++ +L ++ + + G I E W+ LF+P F Y +++ + +++ +
Sbjct: 282 FSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLE 341
Query: 120 DLLAWKGWVESRLRQL 135
L G ES L L
Sbjct: 342 GLTTTIGKFESGLVNL 357
>sp|P40971|LYS14_YEAST Lysine biosynthesis regulatory protein LYS14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LYS14 PE=1
SV=2
Length = 790
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 265 SVDQDGPEKRQSISPQKQDSLSP--DHLAPSSVRSGTG--------SNVEPV--IPDKRV 312
++D++ PE R+ LSP +L+P+S+ SG+ S EP +P
Sbjct: 6 NLDENSPEDRELAK-----VLSPPGSYLSPASLDSGSSFTNSGTSTSCFEPKNNLPSLSF 60
Query: 313 LNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSD 370
LN G + N +TS S ++G E+V ++ N+GS E + +P +S+ D
Sbjct: 61 LNARAGSLGGIFNHKQMTS-----PSNSNIGGENVESTTSSNDGSNENAGHPTTSEQD 113
>sp|Q9AJ64|SCA4_RICAU Antigenic heat-stable 120 kDa protein (Fragment) OS=Rickettsia
australis GN=sca4 PE=4 SV=1
Length = 991
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 285 LSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAE--GGDVSNSSVITSVTSEVGSCEDV 342
++P+ SS+ + T + V P+ PD + L E A+ N +++ + T+ GS +D+
Sbjct: 350 ITPNQELKSSIETPTTTQVPPITPDSQPLQTETAQMPQSQQVNPNLLNAATALSGSMQDL 409
Query: 343 GNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRH 384
N AG ++ +G ++Q D +A + ++L N
Sbjct: 410 LNYVNAGLTKEKDG---------NTQIDLINAAATAILNNEK 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,090,168
Number of Sequences: 539616
Number of extensions: 7040668
Number of successful extensions: 19816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 19526
Number of HSP's gapped (non-prelim): 357
length of query: 434
length of database: 191,569,459
effective HSP length: 120
effective length of query: 314
effective length of database: 126,815,539
effective search space: 39820079246
effective search space used: 39820079246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)