Query 013882
Match_columns 434
No_of_seqs 160 out of 368
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 2.7E-59 9.3E-64 491.8 18.1 236 1-237 267-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 8.9E-56 3E-60 466.6 19.4 230 1-234 254-530 (530)
3 4fh3_A Poly(A) RNA polymerase 99.2 2.3E-11 7.9E-16 120.5 8.0 96 2-98 243-348 (349)
4 4e8f_A Poly(A) RNA polymerase 98.9 9.9E-10 3.4E-14 112.5 7.6 103 2-106 271-384 (405)
5 2ikf_A RNA uridylyl transferas 98.7 3.6E-09 1.2E-13 106.0 2.9 82 2-83 260-349 (353)
6 2b4v_A RNA editing complex pro 97.8 1.1E-05 3.9E-10 84.2 5.0 85 2-86 350-441 (468)
7 3nyb_A Poly(A) RNA polymerase 97.5 5.4E-05 1.9E-09 75.1 4.9 78 2-84 217-298 (323)
8 3hj4_A Minor editosome-associa 91.3 0.43 1.5E-05 48.8 7.7 53 44-98 327-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 89.0 0.42 1.4E-05 49.9 5.6 65 2-99 388-460 (464)
10 3ukx_C Bimax2 peptide; arm rep 14.3 1E+02 0.0034 19.9 2.0 18 257-275 8-25 (28)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=2.7e-59 Score=491.75 Aligned_cols=236 Identities=35% Similarity=0.601 Sum_probs=207.0
Q ss_pred ChHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHH
Q 013882 1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNT 80 (434)
Q Consensus 1 mLV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~ 80 (434)
+||.+||.+|++|+||+||+|+++.++.+++++|||+.|++|+.|+||||||+||++|+|+||+++|+++|++||+||++
T Consensus 267 ~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~ 346 (514)
T 1q79_A 267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA 346 (514)
T ss_dssp HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhhhcCCcchhhccccEEEEEEEeCCHhHhHhHHHHHHHHHHHHHHHhhhccCCceeeccCCCCCCCCC
Q 013882 81 ICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTS 160 (434)
Q Consensus 81 I~~~I~~g~~~W~~LFep~~FF~~Yk~YL~I~vsA~see~~~~W~GwVESRLR~Lv~~LE~~~~~~l~ahP~P~~F~d~~ 160 (434)
++++|..++.+|++||+|++||.+|+|||+|+++|.+++++.+|.||||||||.||.+||+.. .+..|||||++|.+..
T Consensus 347 il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~-~i~~a~~~P~~f~~~~ 425 (514)
T 1q79_A 347 ITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPK 425 (514)
T ss_dssp HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCC
T ss_pred HHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC-CceeeecCccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999864 3445999999998764
Q ss_pred ----CCCceeeEEEeeeeCCC---CccCCCceeehhhHHHHHHHHHhhhcccCCccEEEEEeeccCCCCCCCCCCCcccc
Q 013882 161 ----KPCAHCAFFMGLQRKPG---EVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRT 233 (434)
Q Consensus 161 ----~~~~~~~fFIGL~~~~~---~~~~~~~~~DL~~~v~eF~~~I~~~~~~~~gM~I~VshVkrsqLP~~Vf~~g~kr~ 233 (434)
...|.++|||||.++.. ...+.+.++||+.++++|++.|++|..|++||+|+|+|||+++||++||++|++|.
T Consensus 426 ~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~ 505 (514)
T 1q79_A 426 ENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK 505 (514)
T ss_dssp SCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC-------
T ss_pred ccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCC
Confidence 34678999999998752 22235678999999999999999999999999999999999999999999999988
Q ss_pred CCCc
Q 013882 234 RHPR 237 (434)
Q Consensus 234 r~~~ 237 (434)
|+.+
T Consensus 506 ~~~~ 509 (514)
T 1q79_A 506 KKHS 509 (514)
T ss_dssp ----
T ss_pred CCCC
Confidence 7743
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=8.9e-56 Score=466.55 Aligned_cols=230 Identities=29% Similarity=0.592 Sum_probs=210.0
Q ss_pred ChHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHH
Q 013882 1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNT 80 (434)
Q Consensus 1 mLV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~ 80 (434)
+||.+||.+|++|+||+||+|++++++.+++++|+|+.|++|+.|+||||||+||++|+|+|||++|+++|++||+||++
T Consensus 254 ~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ 333 (530)
T 2hhp_A 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQ 333 (530)
T ss_dssp HHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhhhcCCcchhhccccEEEEEEEeC-CHhHhHhHHHHHHHHHHHHHHHhhhccCCceeeccCCCCCCCC
Q 013882 81 ICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT 159 (434)
Q Consensus 81 I~~~I~~g~~~W~~LFep~~FF~~Yk~YL~I~vsA~-see~~~~W~GwVESRLR~Lv~~LE~~~~~~l~ahP~P~~F~d~ 159 (434)
++++|..++.+|.+||+|++||.+|+|||+|++++. +++++..|.||||||||.||.+||+. .++..|||||+.|.+.
T Consensus 334 ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~-~~i~~a~~~p~~f~~~ 412 (530)
T 2hhp_A 334 ITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGIKIAHPFTKPFESS 412 (530)
T ss_dssp HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEEEEECSSCEEEE
T ss_pred HHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcc-cCceeeecCCcccCcc
Confidence 999999999999999999999999999999999997 99999999999999999999999994 4666799999998431
Q ss_pred -------------------------------------C------CCCceeeEEEeeeeCCCCccCCCceeehhhHHHHHH
Q 013882 160 -------------------------------------S------KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFK 196 (434)
Q Consensus 160 -------------------------------------~------~~~~~~~fFIGL~~~~~~~~~~~~~~DL~~~v~eF~ 196 (434)
+ ...+.++|||||.++.. +.++++||+.++++|+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~ 489 (530)
T 2hhp_A 413 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFV 489 (530)
T ss_dssp EECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHH
T ss_pred ccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHH
Confidence 0 13456899999999753 2457899999999999
Q ss_pred HHHhhhcc-cCCc-cE-EEEEeeccCCCCCCCCCCCccccC
Q 013882 197 LSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRTR 234 (434)
Q Consensus 197 ~~I~~~~~-~~~g-M~-I~VshVkrsqLP~~Vf~~g~kr~r 234 (434)
+.|++|.. |+++ |+ |.|+|||++|||+|||++|++|++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 490 NLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp HHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred HHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 99999998 8876 89 999999999999999999998864
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.19 E-value=2.3e-11 Score=120.50 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=68.8
Q ss_pred hHHHHHHhhc-cCCCCCceecccccccc---------CCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHH
Q 013882 2 LVSRFFRVYT-MWRWPNPVMLCAIDEAE---------LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVM 71 (434)
Q Consensus 2 LV~kFF~vyS-~W~WP~PV~L~~i~~~~---------lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI 71 (434)
|+..||.+|+ +|+|+++|+......+- .....|++..+..+..++|+|++|.+|..|.++||+..++..|
T Consensus 243 LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I 322 (349)
T 4fh3_A 243 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI 322 (349)
T ss_dssp HHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHH
Confidence 7889999998 69999998754322111 1223455555566667899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhcCC
Q 013882 72 MDQFQYGNTICEEVELNKAQWSALFEP 98 (434)
Q Consensus 72 ~eEf~RG~~I~~~I~~g~~~W~~LFep 98 (434)
++||+||++++.+.. ...+|+.||+.
T Consensus 323 ~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 323 RGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp HHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred HHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 999999999998632 34689999985
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=98.93 E-value=9.9e-10 Score=112.54 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=77.4
Q ss_pred hHHHHHHhhc-cCCCCCceeccccccc-cCC--ccccCCCCC-------CCCCCCcceEecCCCCCCcchhhcChhhHHH
Q 013882 2 LVSRFFRVYT-MWRWPNPVMLCAIDEA-ELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRV 70 (434)
Q Consensus 2 LV~kFF~vyS-~W~WP~PV~L~~i~~~-~lg--~~vWdPr~n-------~rDr~hlMPIITPayP~mNST~NVT~STl~v 70 (434)
|+..||.+|+ .|+|.+.|+-... .+ .+. ...|..+.+ ..++.++|+|..|..|..|.+.+|+..++..
T Consensus 271 LL~~FF~yY~~~Fd~~~~vIsir~-~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~ 349 (405)
T 4e8f_A 271 LLHGFFRFYAYKFEPREKVVTFRR-PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYR 349 (405)
T ss_dssp HHHHHHHHHHHTCCTTTBEECSSS-TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcEEEEec-CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHH
Confidence 7899999999 8999998765321 12 111 145876521 1235689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhcCCcchhhccc
Q 013882 71 MMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYR 106 (434)
Q Consensus 71 I~eEf~RG~~I~~~I~~g~~~W~~LFep~~FF~~Yk 106 (434)
|++||.||++++.... .+.+|+.||+++++..+..
T Consensus 350 I~~eF~rA~~iL~~~~-~~~~w~~Lf~~~~~~~~~~ 384 (405)
T 4e8f_A 350 IRGEFMAASRLLNSRS-YPIPYDSLFEEAPIPPRRQ 384 (405)
T ss_dssp HHHHHHHHHHHHTCSS-SSCCGGGGGSCCCCC----
T ss_pred HHHHHHHHHHHHhhhc-cCCCHHHHhCcCCCccccc
Confidence 9999999999998743 2578999999999997543
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=98.71 E-value=3.6e-09 Score=106.03 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=63.1
Q ss_pred hHHHHHHhhc-cCCCCCceecc-ccccccCCccccCCC------CCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHH
Q 013882 2 LVSRFFRVYT-MWRWPNPVMLC-AIDEAELGFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 73 (434)
Q Consensus 2 LV~kFF~vyS-~W~WP~PV~L~-~i~~~~lg~~vWdPr------~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~e 73 (434)
|+..||.+|+ +|+|.++|+-- ....-......|+++ .++.++.+.|+|.+|..|..|.+++|+.+++..|++
T Consensus 260 LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~ 339 (353)
T 2ikf_A 260 QVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRR 339 (353)
T ss_dssp HHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccccCcCceEEEcCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHH
Confidence 7899999999 89999997642 211000011358742 233456789999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013882 74 QFQYGNTICE 83 (434)
Q Consensus 74 Ef~RG~~I~~ 83 (434)
||+||+++|-
T Consensus 340 ~f~~A~~~~~ 349 (353)
T 2ikf_A 340 HLEKARDTAL 349 (353)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=97.83 E-value=1.1e-05 Score=84.21 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=63.1
Q ss_pred hHHHHHHhhc-cCCCCCcee-ccccccccCCccccCCCCCC-CCCCCcceEecCCCC----CCcchhhcChhhHHHHHHH
Q 013882 2 LVSRFFRVYT-MWRWPNPVM-LCAIDEAELGFSVWDPRKNR-RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQ 74 (434)
Q Consensus 2 LV~kFF~vyS-~W~WP~PV~-L~~i~~~~lg~~vWdPr~n~-rDr~hlMPIITPayP----~mNST~NVT~STl~vI~eE 74 (434)
|+..||.+|+ .|+|.+.|+ +.....-.-....|....+. ....+.|.|..|..| ..|.+.+|+..+++.|++|
T Consensus 350 LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~e 429 (468)
T 2b4v_A 350 LLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQE 429 (468)
T ss_dssp HHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCcEEEecCCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHH
Confidence 7899999999 999999876 32211000011347642221 112357999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013882 75 FQYGNTICEEVE 86 (434)
Q Consensus 75 f~RG~~I~~~I~ 86 (434)
|.+|+++++...
T Consensus 430 F~~A~~~L~~~~ 441 (468)
T 2b4v_A 430 FLRAAQCMERFL 441 (468)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 7
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.55 E-value=5.4e-05 Score=75.08 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=58.1
Q ss_pred hHHHHHHhhc-cCCCCCceecccccccc---CCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHH
Q 013882 2 LVSRFFRVYT-MWRWPNPVMLCAIDEAE---LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQY 77 (434)
Q Consensus 2 LV~kFF~vyS-~W~WP~PV~L~~i~~~~---lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~R 77 (434)
|+..||.+|+ +|+|++.++- +..+. +.-..|..- ++..+.+.|+|..|..|..|.+.++ ..++.|++||.+
T Consensus 217 LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~ 291 (323)
T 3nyb_A 217 LLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG 291 (323)
T ss_dssp HHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence 7899999999 9999997663 22121 112356542 2223468999999999988888874 457899999999
Q ss_pred HHHHHHH
Q 013882 78 GNTICEE 84 (434)
Q Consensus 78 G~~I~~~ 84 (434)
|++++.+
T Consensus 292 A~~~L~~ 298 (323)
T 3nyb_A 292 AFDLLTN 298 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=91.28 E-value=0.43 Score=48.81 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHHHHHHHhhcccchhhhcCC
Q 013882 44 THHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 98 (434)
Q Consensus 44 ~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~I~~~I~~g~~~W~~LFep 98 (434)
+.+..|=- .--..|++..|+.+-...|+.||+|+++|+.+=+ +....+++|-.
T Consensus 327 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 327 NSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp SSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred ccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccc-ccccHHHHhhh
Confidence 34555544 5568899999999999999999999999987522 33467777654
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.95 E-value=0.42 Score=49.93 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=41.6
Q ss_pred hHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHHH
Q 013882 2 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTI 81 (434)
Q Consensus 2 LV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~I 81 (434)
|+.-||.+|++++|-+-|+= | ..|.+.||+.+.+..++.|+++|+-|
T Consensus 388 LL~gFF~yYa~FDf~~~vIs---------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~i 434 (464)
T 3pq1_A 388 LLKEFFEYFGNFAXXXXXXX---------------------------X------XXXXXXXVSQSQLQKFVDLARESAWI 434 (464)
T ss_dssp HHHHHHHHGGGCCCCCCCCC---------------------------C------C-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccc---------------------------c------ccccccccCHHHHHHHHHHHHHHHHH
Confidence 78899999999999876541 1 78999999999999999999999999
Q ss_pred HHHHhh------cccchh--hhcCCc
Q 013882 82 CEEVEL------NKAQWS--ALFEPY 99 (434)
Q Consensus 82 ~~~I~~------g~~~W~--~LFep~ 99 (434)
++.-.. ...+|. .|+.|.
T Consensus 435 l~~~~~~~~~~~~~~~wgl~~ll~~~ 460 (464)
T 3pq1_A 435 LQQEDTDRPSISSNRPWGLVSLLLPS 460 (464)
T ss_dssp HHCC-----------CCTTGGGCC--
T ss_pred HhhccccCcCCCCCCCcchHHHhccC
Confidence 983222 224575 565553
No 10
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=14.34 E-value=1e+02 Score=19.85 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=8.8
Q ss_pred ccccCCCCCcCCCCccccc
Q 013882 257 LKRKKDPESVDQDGPEKRQ 275 (434)
Q Consensus 257 ~krk~~~~~~~~~~~~kr~ 275 (434)
.|||++= +.+.+-|.||.
T Consensus 8 rkrkrew-dddddppkkrr 25 (28)
T 3ukx_C 8 RKRKREW-DDDDDPPKKRR 25 (28)
T ss_dssp CCCCCCC-CCSSSCCSCCC
T ss_pred HHhhccc-ccCCCchhhhh
Confidence 3444433 34455566664
Done!