Query 013884
Match_columns 434
No_of_seqs 387 out of 2225
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2315 Predicted translation 100.0 3.2E-78 6.9E-83 567.0 34.1 351 2-358 76-433 (566)
2 COG5354 Uncharacterized protei 100.0 7.4E-57 1.6E-61 418.1 31.4 331 2-342 74-417 (561)
3 KOG2314 Translation initiation 100.0 8E-46 1.7E-50 347.1 27.0 340 2-350 252-610 (698)
4 PF08662 eIF2A: Eukaryotic tra 100.0 8.6E-41 1.9E-45 293.8 24.1 194 137-330 1-194 (194)
5 KOG0271 Notchless-like WD40 re 100.0 1E-39 2.2E-44 293.9 21.9 310 2-343 118-470 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-33 8.1E-38 254.6 23.0 271 2-313 178-458 (459)
7 KOG0271 Notchless-like WD40 re 100.0 8.6E-30 1.9E-34 229.9 21.9 279 2-313 160-479 (480)
8 KOG0286 G-protein beta subunit 100.0 2.4E-28 5.2E-33 213.7 29.5 270 2-313 58-343 (343)
9 KOG0315 G-protein beta subunit 100.0 2.9E-27 6.3E-32 202.6 29.8 269 11-320 10-294 (311)
10 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-29 1.1E-33 227.6 19.8 263 50-343 176-449 (459)
11 KOG0273 Beta-transducin family 100.0 4.5E-27 9.7E-32 217.6 28.5 272 2-314 238-522 (524)
12 KOG0318 WD40 repeat stress pro 100.0 3.6E-26 7.8E-31 214.2 32.2 310 1-342 192-590 (603)
13 KOG0291 WD40-repeat-containing 100.0 8.2E-25 1.8E-29 212.8 35.8 308 2-342 58-538 (893)
14 cd00200 WD40 WD40 domain, foun 100.0 8.8E-25 1.9E-29 202.7 34.5 272 2-313 12-289 (289)
15 KOG0273 Beta-transducin family 100.0 1.3E-25 2.8E-30 208.0 27.7 299 2-339 181-508 (524)
16 KOG0293 WD40 repeat-containing 99.9 2.8E-26 6.2E-31 209.0 21.4 272 2-315 227-513 (519)
17 KOG0279 G protein beta subunit 99.9 1.2E-24 2.7E-29 189.5 30.3 274 2-315 18-313 (315)
18 KOG0306 WD40-repeat-containing 99.9 4.1E-24 9E-29 207.8 26.9 279 2-320 376-669 (888)
19 KOG0291 WD40-repeat-containing 99.9 2.7E-23 5.9E-28 202.3 32.4 286 2-318 268-615 (893)
20 KOG0263 Transcription initiati 99.9 1.5E-24 3.3E-29 212.6 22.6 244 38-316 370-650 (707)
21 PLN00181 protein SPA1-RELATED; 99.9 5.5E-23 1.2E-27 219.2 36.3 272 1-314 485-792 (793)
22 KOG0279 G protein beta subunit 99.9 1.7E-23 3.6E-28 182.4 26.2 261 49-342 15-301 (315)
23 KOG0266 WD40 repeat-containing 99.9 8.3E-24 1.8E-28 210.8 28.0 277 2-316 162-455 (456)
24 KOG0296 Angio-associated migra 99.9 6.1E-23 1.3E-27 184.9 28.2 282 2-315 67-398 (399)
25 KOG0286 G-protein beta subunit 99.9 2E-22 4.3E-27 176.8 30.2 265 48-342 54-333 (343)
26 KOG0645 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 175.9 28.7 279 2-315 17-311 (312)
27 KOG0318 WD40 repeat stress pro 99.9 1.6E-22 3.4E-27 189.9 31.1 277 2-315 238-602 (603)
28 KOG0284 Polyadenylation factor 99.9 9.8E-25 2.1E-29 198.9 15.5 272 2-314 99-379 (464)
29 KOG0265 U5 snRNP-specific prot 99.9 2.6E-23 5.5E-28 183.0 23.1 260 1-343 49-327 (338)
30 KOG0305 Anaphase promoting com 99.9 1.3E-22 2.8E-27 195.6 27.6 274 4-317 182-463 (484)
31 KOG1407 WD40 repeat protein [F 99.9 3.5E-22 7.6E-27 172.6 27.3 278 2-314 23-310 (313)
32 KOG0643 Translation initiation 99.9 4.2E-23 9.1E-28 178.9 21.4 285 2-317 13-319 (327)
33 KOG0295 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 181.9 22.4 273 2-314 111-405 (406)
34 KOG0282 mRNA splicing factor [ 99.9 2.8E-23 6E-28 193.2 16.5 273 1-313 216-503 (503)
35 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-20 2.3E-25 168.0 30.7 271 2-314 17-302 (311)
36 KOG0315 G-protein beta subunit 99.9 1.9E-21 4.2E-26 167.0 25.1 243 2-280 43-299 (311)
37 KOG0275 Conserved WD40 repeat- 99.9 1.1E-22 2.5E-27 180.4 16.3 278 2-313 216-507 (508)
38 KOG0263 Transcription initiati 99.9 3.6E-22 7.7E-27 196.0 21.2 236 2-271 381-651 (707)
39 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-19 2.2E-24 171.8 36.7 282 12-333 2-299 (300)
40 KOG0285 Pleiotropic regulator 99.9 3.4E-21 7.4E-26 173.2 24.3 287 2-335 154-454 (460)
41 KOG0772 Uncharacterized conser 99.9 1.1E-21 2.4E-26 183.8 21.7 284 1-312 169-484 (641)
42 KOG1407 WD40 repeat protein [F 99.9 3.8E-21 8.3E-26 166.3 23.3 260 50-342 21-290 (313)
43 cd00200 WD40 WD40 domain, foun 99.9 3.5E-20 7.6E-25 171.7 31.8 261 49-342 9-279 (289)
44 KOG0316 Conserved WD40 repeat- 99.9 5E-21 1.1E-25 163.2 23.3 268 2-313 20-297 (307)
45 KOG0283 WD40 repeat-containing 99.9 8.5E-22 1.9E-26 194.9 21.5 233 2-317 270-578 (712)
46 KOG0973 Histone transcription 99.9 3.5E-21 7.7E-26 195.1 25.6 289 2-318 16-358 (942)
47 KOG0284 Polyadenylation factor 99.9 4.9E-22 1.1E-26 181.3 13.3 236 1-269 140-380 (464)
48 KOG0293 WD40 repeat-containing 99.9 9.1E-21 2E-25 173.3 20.4 272 50-358 226-512 (519)
49 KOG2096 WD40 repeat protein [G 99.9 3.5E-20 7.5E-25 164.5 23.4 274 2-316 89-404 (420)
50 KOG0319 WD40-repeat-containing 99.9 8.7E-20 1.9E-24 177.8 26.7 290 24-343 301-608 (775)
51 KOG0310 Conserved WD40 repeat- 99.9 5.2E-20 1.1E-24 171.8 23.6 272 2-314 29-308 (487)
52 KOG0266 WD40 repeat-containing 99.9 9.1E-20 2E-24 181.8 26.9 262 50-342 160-440 (456)
53 PLN00181 protein SPA1-RELATED; 99.9 2.8E-19 6.2E-24 190.8 31.8 285 25-342 457-781 (793)
54 KOG0316 Conserved WD40 repeat- 99.9 6.6E-20 1.4E-24 156.4 21.2 263 48-343 16-289 (307)
55 KOG0276 Vesicle coat complex C 99.9 2E-19 4.4E-24 172.1 25.9 266 2-298 16-288 (794)
56 KOG0973 Histone transcription 99.9 6.1E-20 1.3E-24 186.2 23.6 240 2-270 72-356 (942)
57 KOG0268 Sof1-like rRNA process 99.9 9.6E-21 2.1E-25 170.6 15.6 253 22-315 85-345 (433)
58 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-18 2.7E-23 154.9 28.7 261 50-344 15-295 (311)
59 PTZ00421 coronin; Provisional 99.9 1.3E-18 2.9E-23 173.3 32.4 238 3-317 24-292 (493)
60 KOG0292 Vesicle coat complex C 99.9 3.7E-19 8.1E-24 176.2 27.6 281 2-315 12-321 (1202)
61 KOG0288 WD40 repeat protein Ti 99.9 1.4E-20 3E-25 172.2 16.2 267 2-313 178-459 (459)
62 KOG0645 WD40 repeat protein [G 99.9 7.7E-19 1.7E-23 152.9 25.3 218 86-333 10-242 (312)
63 KOG1274 WD40 repeat protein [G 99.9 4.6E-19 9.9E-24 176.7 26.9 255 50-339 14-285 (933)
64 KOG0650 WD40 repeat nucleolar 99.8 8.3E-20 1.8E-24 174.0 19.6 298 1-344 402-725 (733)
65 KOG0305 Anaphase promoting com 99.8 2.9E-19 6.3E-24 172.6 23.3 239 2-271 220-463 (484)
66 PTZ00420 coronin; Provisional 99.8 4.6E-18 9.9E-23 170.5 32.3 257 7-337 34-319 (568)
67 KOG0647 mRNA export protein (c 99.8 1.1E-18 2.3E-23 154.1 23.6 265 2-299 30-313 (347)
68 KOG0295 WD40 repeat-containing 99.8 5.4E-19 1.2E-23 159.5 21.4 262 50-342 109-394 (406)
69 KOG0772 Uncharacterized conser 99.8 2.2E-19 4.8E-24 168.4 19.4 274 50-342 168-475 (641)
70 KOG0278 Serine/threonine kinas 99.8 1.4E-19 3E-24 155.7 15.9 273 2-316 17-298 (334)
71 KOG0296 Angio-associated migra 99.8 3.9E-18 8.5E-23 154.1 25.8 271 39-342 57-386 (399)
72 KOG0313 Microtubule binding pr 99.8 8.5E-18 1.8E-22 152.6 26.6 269 3-314 109-417 (423)
73 KOG0265 U5 snRNP-specific prot 99.8 2.6E-18 5.7E-23 151.5 22.3 227 2-311 93-334 (338)
74 KOG0277 Peroxisomal targeting 99.8 1.7E-18 3.7E-23 149.4 20.2 282 3-314 12-308 (311)
75 KOG0306 WD40-repeat-containing 99.8 7.9E-18 1.7E-22 164.5 26.8 298 24-350 342-661 (888)
76 KOG0282 mRNA splicing factor [ 99.8 3.9E-19 8.5E-24 165.8 16.8 237 2-267 261-503 (503)
77 KOG0281 Beta-TrCP (transducin 99.8 1.3E-19 2.8E-24 162.5 12.1 246 24-316 215-478 (499)
78 KOG0641 WD40 repeat protein [G 99.8 2.4E-16 5.2E-21 133.9 31.2 289 1-316 34-350 (350)
79 KOG0294 WD40 repeat-containing 99.8 4E-18 8.7E-23 151.3 20.9 229 2-317 46-283 (362)
80 KOG0288 WD40 repeat protein Ti 99.8 9.3E-19 2E-23 160.3 17.1 260 49-343 175-450 (459)
81 PRK03629 tolB translocation pr 99.8 7E-17 1.5E-21 160.1 31.5 240 71-335 180-428 (429)
82 KOG0319 WD40-repeat-containing 99.8 1.2E-17 2.5E-22 163.1 24.2 276 2-314 326-618 (775)
83 KOG2055 WD40 repeat protein [G 99.8 2.8E-17 6.1E-22 152.6 24.7 274 2-315 216-512 (514)
84 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.1E-16 6.7E-21 147.9 32.2 255 2-289 33-300 (300)
85 KOG1273 WD40 repeat protein [G 99.8 3.2E-17 6.9E-22 145.6 22.9 272 3-315 27-322 (405)
86 KOG0640 mRNA cleavage stimulat 99.8 7.8E-18 1.7E-22 149.1 18.6 272 2-313 115-424 (430)
87 KOG1036 Mitotic spindle checkp 99.8 8.7E-17 1.9E-21 142.6 24.5 262 2-300 16-295 (323)
88 KOG0643 Translation initiation 99.8 2.7E-17 5.8E-22 143.0 20.1 234 2-269 55-317 (327)
89 PTZ00421 coronin; Provisional 99.8 1E-16 2.2E-21 159.8 26.3 220 2-246 78-313 (493)
90 KOG1274 WD40 repeat protein [G 99.8 1.6E-16 3.4E-21 158.8 26.6 257 3-299 17-290 (933)
91 KOG0276 Vesicle coat complex C 99.8 2.6E-17 5.6E-22 157.9 20.2 260 50-341 14-286 (794)
92 KOG0277 Peroxisomal targeting 99.8 3.4E-17 7.5E-22 141.4 18.8 260 54-342 13-296 (311)
93 KOG1539 WD repeat protein [Gen 99.8 6.6E-16 1.4E-20 152.8 30.1 312 2-342 205-635 (910)
94 KOG0283 WD40 repeat-containing 99.8 2E-17 4.4E-22 164.1 19.4 235 50-314 269-531 (712)
95 KOG0299 U3 snoRNP-associated p 99.8 1.6E-16 3.4E-21 147.7 23.5 265 2-299 145-445 (479)
96 KOG0278 Serine/threonine kinas 99.8 4.8E-18 1E-22 146.3 12.1 216 24-272 79-300 (334)
97 KOG0641 WD40 repeat protein [G 99.8 3.2E-15 6.9E-20 127.2 28.9 264 50-342 33-337 (350)
98 KOG1408 WD40 repeat protein [F 99.8 4.1E-16 8.8E-21 151.7 25.2 302 4-343 329-702 (1080)
99 KOG0285 Pleiotropic regulator 99.8 1.8E-16 3.8E-21 143.0 21.2 262 48-343 150-428 (460)
100 KOG0274 Cdc4 and related F-box 99.7 5.7E-16 1.2E-20 154.9 26.4 267 2-320 211-488 (537)
101 KOG4497 Uncharacterized conser 99.7 2E-16 4.4E-21 141.3 20.4 306 4-339 13-417 (447)
102 KOG0310 Conserved WD40 repeat- 99.7 5.1E-16 1.1E-20 145.3 22.9 261 50-342 27-297 (487)
103 KOG1408 WD40 repeat protein [F 99.7 2.7E-16 5.8E-21 153.0 21.3 241 49-316 459-714 (1080)
104 KOG2096 WD40 repeat protein [G 99.7 2.9E-16 6.3E-21 139.7 19.4 207 48-315 85-308 (420)
105 PRK04922 tolB translocation pr 99.7 1.9E-15 4.2E-20 150.4 27.8 242 71-334 185-432 (433)
106 KOG0268 Sof1-like rRNA process 99.7 2.5E-17 5.3E-22 148.8 12.6 269 48-359 65-345 (433)
107 KOG0289 mRNA splicing factor [ 99.7 1.5E-15 3.1E-20 140.3 24.1 273 2-314 222-505 (506)
108 KOG1538 Uncharacterized conser 99.7 3.8E-16 8.2E-21 150.8 20.5 268 2-316 15-294 (1081)
109 KOG0289 mRNA splicing factor [ 99.7 1.2E-15 2.7E-20 140.8 23.0 225 50-299 220-452 (506)
110 KOG0639 Transducin-like enhanc 99.7 2.2E-16 4.8E-21 148.0 18.3 274 1-314 421-703 (705)
111 PRK01742 tolB translocation pr 99.7 2.1E-15 4.6E-20 149.8 26.6 236 70-335 184-426 (429)
112 PTZ00420 coronin; Provisional 99.7 4.7E-15 1E-19 148.9 29.0 195 108-321 44-256 (568)
113 PRK05137 tolB translocation pr 99.7 4.1E-15 8.9E-20 148.1 28.3 247 71-335 183-433 (435)
114 KOG2106 Uncharacterized conser 99.7 3.6E-14 7.7E-19 133.5 32.1 296 2-342 203-509 (626)
115 KOG1063 RNA polymerase II elon 99.7 8.5E-16 1.8E-20 149.2 22.0 312 2-342 194-636 (764)
116 KOG0640 mRNA cleavage stimulat 99.7 8.7E-17 1.9E-21 142.5 13.5 220 48-321 111-342 (430)
117 KOG2315 Predicted translation 99.7 3.7E-15 8.1E-20 142.0 25.3 303 26-342 11-372 (566)
118 PRK03629 tolB translocation pr 99.7 7.6E-15 1.6E-19 145.6 28.8 242 25-289 178-427 (429)
119 PRK05137 tolB translocation pr 99.7 9.4E-15 2E-19 145.6 29.2 244 25-290 181-433 (435)
120 KOG0302 Ribosome Assembly prot 99.7 8.8E-16 1.9E-20 139.5 18.7 226 92-342 153-426 (440)
121 KOG0264 Nucleosome remodeling 99.7 4.1E-15 8.9E-20 138.3 23.3 248 48-320 123-409 (422)
122 KOG0275 Conserved WD40 repeat- 99.7 8.3E-16 1.8E-20 137.0 17.9 259 50-342 214-497 (508)
123 PRK11028 6-phosphogluconolacto 99.7 9.7E-14 2.1E-18 133.4 33.8 263 24-315 10-304 (330)
124 PRK01742 tolB translocation pr 99.7 4.3E-15 9.4E-20 147.6 24.4 249 11-290 168-426 (429)
125 KOG0313 Microtubule binding pr 99.7 6.6E-15 1.4E-19 134.0 22.5 269 52-342 108-406 (423)
126 PRK04922 tolB translocation pr 99.7 2E-14 4.4E-19 143.0 28.1 242 25-289 183-432 (433)
127 KOG4378 Nuclear protein COP1 [ 99.7 8.9E-15 1.9E-19 137.2 23.2 285 25-341 11-309 (673)
128 KOG1539 WD repeat protein [Gen 99.7 1.2E-13 2.6E-18 137.0 32.4 284 2-313 247-646 (910)
129 PRK01029 tolB translocation pr 99.7 8.8E-14 1.9E-18 137.6 31.6 264 11-291 146-426 (428)
130 KOG2106 Uncharacterized conser 99.7 1E-13 2.2E-18 130.4 29.3 264 2-314 249-520 (626)
131 PRK02889 tolB translocation pr 99.7 5E-14 1.1E-18 139.8 29.0 241 71-335 177-425 (427)
132 KOG2055 WD40 repeat protein [G 99.7 6E-15 1.3E-19 137.3 20.6 264 50-341 214-499 (514)
133 KOG0292 Vesicle coat complex C 99.7 9.9E-15 2.1E-19 145.3 23.3 260 50-342 10-309 (1202)
134 KOG0307 Vesicle coat complex C 99.7 4.6E-16 9.9E-21 159.1 14.3 283 4-318 11-330 (1049)
135 KOG1332 Vesicle coat complex C 99.7 6.2E-15 1.3E-19 126.9 18.7 235 2-316 14-287 (299)
136 KOG0302 Ribosome Assembly prot 99.7 1.2E-14 2.5E-19 132.3 21.3 230 4-313 156-436 (440)
137 KOG2314 Translation initiation 99.7 3.4E-14 7.3E-19 135.1 25.1 308 3-342 214-555 (698)
138 KOG0269 WD40 repeat-containing 99.7 3.3E-15 7.2E-20 146.8 18.9 265 54-342 44-327 (839)
139 KOG4328 WD40 protein [Function 99.7 1.9E-14 4E-19 134.0 22.8 281 2-316 189-496 (498)
140 KOG0264 Nucleosome remodeling 99.7 3.3E-15 7.2E-20 138.9 17.4 227 92-342 126-391 (422)
141 KOG0281 Beta-TrCP (transducin 99.7 4.2E-16 9.2E-21 140.1 11.1 237 39-317 187-430 (499)
142 KOG1273 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 129.6 19.6 259 53-342 27-311 (405)
143 PRK02889 tolB translocation pr 99.7 2.8E-14 6E-19 141.7 25.0 241 25-290 175-425 (427)
144 KOG0639 Transducin-like enhanc 99.7 2.5E-15 5.4E-20 141.0 16.2 232 2-267 468-702 (705)
145 KOG1009 Chromatin assembly com 99.7 3E-14 6.6E-19 130.8 22.5 292 2-320 16-377 (434)
146 PRK04792 tolB translocation pr 99.6 3.2E-13 7E-18 134.6 28.7 242 71-335 199-447 (448)
147 KOG0300 WD40 repeat-containing 99.6 4.2E-14 9.1E-19 126.0 19.5 269 24-337 168-457 (481)
148 KOG2919 Guanine nucleotide-bin 99.6 9.2E-14 2E-18 124.2 21.2 268 3-299 53-360 (406)
149 PRK01029 tolB translocation pr 99.6 5.6E-13 1.2E-17 131.9 29.2 247 71-336 166-426 (428)
150 KOG0646 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 134.9 16.8 220 1-296 83-336 (476)
151 KOG1063 RNA polymerase II elon 99.6 1.7E-13 3.6E-18 133.5 24.3 312 2-335 270-675 (764)
152 KOG0646 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 126.7 24.5 288 25-341 17-336 (476)
153 KOG4283 Transcription-coupled 99.6 3E-13 6.5E-18 119.5 22.8 284 2-314 46-364 (397)
154 PRK04043 tolB translocation pr 99.6 3.4E-12 7.3E-17 125.6 33.2 230 71-322 170-407 (419)
155 KOG2048 WD40 repeat protein [G 99.6 4.7E-13 1E-17 130.2 25.9 309 2-335 157-528 (691)
156 KOG2048 WD40 repeat protein [G 99.6 9E-13 1.9E-17 128.3 27.2 266 2-299 28-309 (691)
157 KOG2919 Guanine nucleotide-bin 99.6 1.7E-13 3.8E-18 122.5 20.6 260 54-341 54-357 (406)
158 KOG2445 Nuclear pore complex c 99.6 7E-13 1.5E-17 117.9 24.0 255 1-280 15-332 (361)
159 KOG0267 Microtubule severing p 99.6 5.6E-15 1.2E-19 144.2 11.5 249 10-299 3-258 (825)
160 COG5354 Uncharacterized protei 99.6 5.4E-13 1.2E-17 126.0 24.2 308 4-343 136-463 (561)
161 PRK00178 tolB translocation pr 99.6 1.1E-12 2.4E-17 130.7 28.0 244 71-335 180-428 (430)
162 KOG0301 Phospholipase A2-activ 99.6 6.3E-13 1.4E-17 129.6 24.8 262 3-315 18-288 (745)
163 KOG0274 Cdc4 and related F-box 99.6 2.9E-13 6.2E-18 135.6 22.1 246 50-333 209-463 (537)
164 PRK04792 tolB translocation pr 99.6 2.8E-12 6.1E-17 127.8 29.0 238 26-289 198-446 (448)
165 KOG4497 Uncharacterized conser 99.6 2.3E-13 5E-18 121.9 18.4 265 2-299 94-422 (447)
166 KOG0269 WD40 repeat-containing 99.6 2.5E-13 5.4E-18 133.8 20.3 269 3-299 43-330 (839)
167 KOG0308 Conserved WD40 repeat- 99.6 2.2E-13 4.7E-18 131.9 19.2 275 4-314 29-326 (735)
168 KOG4328 WD40 protein [Function 99.6 5E-13 1.1E-17 124.5 20.9 267 50-343 187-483 (498)
169 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-12 2.7E-17 126.4 24.7 282 4-321 41-354 (369)
170 PRK00178 tolB translocation pr 99.6 3.6E-12 7.9E-17 127.0 28.3 239 26-289 179-427 (430)
171 KOG0299 U3 snoRNP-associated p 99.5 6.6E-13 1.4E-17 123.8 19.9 220 2-254 205-443 (479)
172 TIGR02800 propeller_TolB tol-p 99.5 6.7E-12 1.5E-16 124.6 28.7 230 71-321 171-403 (417)
173 KOG2110 Uncharacterized conser 99.5 6.7E-12 1.5E-16 114.4 25.5 230 54-318 10-251 (391)
174 KOG1332 Vesicle coat complex C 99.5 2.2E-13 4.8E-18 117.4 14.8 209 114-342 29-274 (299)
175 KOG1963 WD40 repeat protein [G 99.5 2.4E-12 5.3E-17 128.8 24.0 274 5-314 22-321 (792)
176 KOG4378 Nuclear protein COP1 [ 99.5 9.3E-13 2E-17 123.8 19.1 253 3-290 38-304 (673)
177 KOG0771 Prolactin regulatory e 99.5 4E-13 8.7E-18 124.2 15.9 200 3-268 148-353 (398)
178 PRK11028 6-phosphogluconolacto 99.5 3.8E-11 8.3E-16 115.4 29.4 256 64-342 6-291 (330)
179 TIGR02800 propeller_TolB tol-p 99.5 3E-11 6.5E-16 120.0 29.0 255 11-288 155-417 (417)
180 KOG2139 WD40 repeat protein [G 99.5 7.1E-12 1.5E-16 113.9 21.7 236 2-268 143-430 (445)
181 KOG0647 mRNA export protein (c 99.5 5.9E-12 1.3E-16 111.8 20.5 255 50-338 28-307 (347)
182 KOG1538 Uncharacterized conser 99.5 3.9E-12 8.5E-17 123.5 21.0 250 51-338 14-277 (1081)
183 PF08662 eIF2A: Eukaryotic tra 99.5 8.8E-13 1.9E-17 116.1 15.2 139 199-342 9-161 (194)
184 KOG0290 Conserved WD40 repeat- 99.5 2.9E-11 6.2E-16 107.0 23.6 275 2-298 47-355 (364)
185 PF10282 Lactonase: Lactonase, 99.5 2.8E-09 6.2E-14 102.9 39.7 261 24-315 11-322 (345)
186 KOG4283 Transcription-coupled 99.5 3.4E-12 7.4E-17 112.9 17.3 204 87-315 40-276 (397)
187 KOG1963 WD40 repeat protein [G 99.5 2.7E-11 5.9E-16 121.5 25.4 288 2-316 208-539 (792)
188 COG2319 FOG: WD40 repeat [Gene 99.5 1.2E-09 2.6E-14 106.5 36.8 295 2-336 68-381 (466)
189 KOG1524 WD40 repeat-containing 99.5 4.7E-12 1E-16 120.2 18.4 198 61-299 76-276 (737)
190 KOG0307 Vesicle coat complex C 99.5 6.5E-13 1.4E-17 136.3 13.3 244 3-271 68-329 (1049)
191 KOG0270 WD40 repeat-containing 99.5 3.1E-11 6.8E-16 112.4 23.1 229 61-317 192-451 (463)
192 PRK04043 tolB translocation pr 99.4 2.2E-10 4.8E-15 112.8 29.6 222 25-273 168-404 (419)
193 KOG2394 WD40 protein DMR-N9 [G 99.4 7.6E-12 1.6E-16 118.9 18.2 90 195-289 290-384 (636)
194 KOG0303 Actin-binding protein 99.4 4.7E-11 1E-15 109.6 22.4 208 86-318 77-297 (472)
195 KOG0321 WD40 repeat-containing 99.4 1.8E-11 3.8E-16 118.6 19.4 286 5-315 55-391 (720)
196 KOG0290 Conserved WD40 repeat- 99.4 7.6E-11 1.7E-15 104.3 21.6 275 35-338 34-349 (364)
197 KOG0308 Conserved WD40 repeat- 99.4 1.2E-11 2.6E-16 120.0 18.1 243 54-316 29-286 (735)
198 KOG1524 WD40 repeat-containing 99.4 2.8E-11 6.1E-16 115.0 19.5 174 2-221 107-280 (737)
199 KOG0267 Microtubule severing p 99.4 1.7E-12 3.6E-17 127.2 11.5 222 4-257 33-259 (825)
200 COG4946 Uncharacterized protei 99.4 2.8E-09 6.2E-14 100.3 31.7 145 189-340 353-504 (668)
201 COG2319 FOG: WD40 repeat [Gene 99.4 2.2E-09 4.7E-14 104.6 33.1 277 2-316 158-443 (466)
202 KOG2139 WD40 repeat protein [G 99.4 2.3E-10 5E-15 104.2 23.6 266 3-299 102-421 (445)
203 KOG0322 G-protein beta subunit 99.4 3.2E-11 6.9E-16 105.3 17.3 272 2-314 17-322 (323)
204 KOG0301 Phospholipase A2-activ 99.4 1.4E-10 3E-15 113.5 23.4 249 50-336 15-271 (745)
205 KOG1007 WD repeat protein TSSC 99.4 5.8E-11 1.3E-15 105.0 18.8 249 69-342 39-348 (370)
206 KOG1009 Chromatin assembly com 99.4 5.3E-11 1.2E-15 109.7 19.3 253 2-272 68-375 (434)
207 KOG0294 WD40 repeat-containing 99.4 1.2E-10 2.7E-15 104.1 20.6 191 1-271 85-283 (362)
208 KOG0644 Uncharacterized conser 99.4 4.8E-12 1E-16 125.8 12.7 293 2-340 193-494 (1113)
209 KOG4227 WD40 repeat protein [G 99.4 3E-10 6.6E-15 104.2 23.2 278 2-314 59-386 (609)
210 KOG1445 Tumor-specific antigen 99.4 3.7E-11 8.1E-16 116.2 17.4 235 57-315 587-844 (1012)
211 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 95.8 35.0 258 26-322 27-338 (352)
212 KOG0270 WD40 repeat-containing 99.3 2.2E-10 4.7E-15 106.8 20.9 236 10-272 191-452 (463)
213 KOG2445 Nuclear pore complex c 99.3 6E-10 1.3E-14 99.5 22.8 250 48-315 12-318 (361)
214 PF10282 Lactonase: Lactonase, 99.3 1.9E-08 4.2E-13 97.1 35.0 262 3-287 40-345 (345)
215 KOG2111 Uncharacterized conser 99.3 1.7E-09 3.6E-14 97.2 24.6 237 54-321 10-262 (346)
216 KOG1036 Mitotic spindle checkp 99.3 1E-09 2.2E-14 98.1 22.5 254 50-341 14-291 (323)
217 KOG1587 Cytoplasmic dynein int 99.3 1.7E-09 3.6E-14 108.1 26.6 261 26-317 222-518 (555)
218 KOG1007 WD repeat protein TSSC 99.3 2.9E-10 6.2E-15 100.7 17.6 246 2-317 66-363 (370)
219 COG2706 3-carboxymuconate cycl 99.3 4.7E-08 1E-12 89.8 32.2 270 24-316 14-322 (346)
220 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.5E-08 1.4E-12 91.9 33.4 244 7-277 53-338 (352)
221 KOG0642 Cell-cycle nuclear pro 99.3 1.4E-10 3.1E-15 111.1 15.3 247 2-279 297-571 (577)
222 KOG0649 WD40 repeat protein [G 99.3 3.2E-09 6.8E-14 92.0 21.8 262 2-337 13-298 (325)
223 KOG0303 Actin-binding protein 99.3 1.9E-09 4.1E-14 99.3 21.6 201 47-272 79-297 (472)
224 KOG1354 Serine/threonine prote 99.2 7.2E-10 1.6E-14 100.4 18.3 264 1-314 27-358 (433)
225 KOG1034 Transcriptional repres 99.2 1.8E-10 3.9E-15 103.6 14.1 240 24-314 113-382 (385)
226 PF00930 DPPIV_N: Dipeptidyl p 99.2 1.3E-08 2.8E-13 98.6 28.2 276 8-300 1-348 (353)
227 PF02239 Cytochrom_D1: Cytochr 99.2 7.9E-09 1.7E-13 100.0 26.0 296 11-342 5-333 (369)
228 KOG0771 Prolactin regulatory e 99.2 4.8E-10 1E-14 104.1 16.6 194 94-316 148-355 (398)
229 KOG0300 WD40 repeat-containing 99.2 4.7E-10 1E-14 100.4 15.8 235 2-270 193-477 (481)
230 KOG1034 Transcriptional repres 99.2 2.8E-10 6E-15 102.4 13.6 226 2-269 138-383 (385)
231 KOG1188 WD40 repeat protein [G 99.2 3E-09 6.6E-14 96.3 19.5 267 24-314 48-345 (376)
232 KOG0321 WD40 repeat-containing 99.2 3.1E-09 6.6E-14 103.4 20.6 240 2-271 103-393 (720)
233 KOG3881 Uncharacterized conser 99.2 1.3E-08 2.9E-13 93.8 23.7 212 60-335 115-342 (412)
234 KOG1587 Cytoplasmic dynein int 99.2 4.1E-09 8.8E-14 105.4 22.1 244 2-270 245-517 (555)
235 KOG2321 WD40 repeat protein [G 99.2 3.1E-09 6.8E-14 102.2 20.2 271 26-342 7-331 (703)
236 KOG0650 WD40 repeat nucleolar 99.2 1.1E-09 2.4E-14 105.7 16.6 236 85-341 395-667 (733)
237 KOG2394 WD40 protein DMR-N9 [G 99.2 1.5E-10 3.2E-15 110.4 10.4 130 195-334 219-384 (636)
238 KOG1445 Tumor-specific antigen 99.1 1.1E-10 2.4E-15 113.0 8.5 108 195-313 627-748 (1012)
239 KOG1272 WD40-repeat-containing 99.1 3.8E-10 8.2E-15 105.8 11.3 246 3-335 133-390 (545)
240 KOG1523 Actin-related protein 99.1 7.2E-09 1.6E-13 93.2 18.4 228 50-299 11-268 (361)
241 COG0823 TolB Periplasmic compo 99.1 2.8E-08 6E-13 97.5 24.3 191 91-300 193-390 (425)
242 KOG1517 Guanine nucleotide bin 99.1 3.2E-08 7E-13 101.5 23.3 284 3-317 1068-1383(1387)
243 KOG2110 Uncharacterized conser 99.0 1.7E-07 3.6E-12 86.1 24.0 253 26-314 68-329 (391)
244 KOG1523 Actin-related protein 99.0 6E-09 1.3E-13 93.7 14.1 153 139-314 8-175 (361)
245 KOG1310 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 102.1 12.3 114 2-127 53-179 (758)
246 COG4946 Uncharacterized protei 99.0 1.6E-07 3.4E-12 88.9 23.2 133 27-169 383-516 (668)
247 KOG2111 Uncharacterized conser 99.0 2.9E-06 6.2E-11 76.7 29.8 227 4-270 10-257 (346)
248 PF15492 Nbas_N: Neuroblastoma 99.0 7E-07 1.5E-11 79.8 25.5 71 3-79 1-74 (282)
249 KOG0322 G-protein beta subunit 99.0 3.8E-08 8.2E-13 86.4 17.1 262 50-342 15-311 (323)
250 KOG1334 WD40 repeat protein [G 99.0 1.2E-08 2.5E-13 96.6 13.7 289 2-316 145-467 (559)
251 KOG1188 WD40 repeat protein [G 98.9 4.9E-08 1.1E-12 88.6 15.8 240 3-268 74-345 (376)
252 PF14583 Pectate_lyase22: Olig 98.9 9.4E-06 2E-10 77.0 31.4 288 6-313 42-379 (386)
253 COG2706 3-carboxymuconate cycl 98.9 3.5E-05 7.5E-10 71.2 33.1 264 2-288 42-345 (346)
254 COG0823 TolB Periplasmic compo 98.9 2.3E-07 5E-12 91.0 20.3 186 3-256 196-389 (425)
255 PF04762 IKI3: IKI3 family; I 98.9 2.4E-06 5.2E-11 91.8 28.7 271 2-314 78-378 (928)
256 KOG2321 WD40 repeat protein [G 98.8 1.2E-06 2.6E-11 84.8 22.2 268 3-299 55-333 (703)
257 PF04762 IKI3: IKI3 family; I 98.8 2.4E-05 5.2E-10 84.3 33.8 289 4-317 214-566 (928)
258 PLN02919 haloacid dehalogenase 98.8 7.7E-06 1.7E-10 89.6 30.0 112 197-318 741-891 (1057)
259 KOG1517 Guanine nucleotide bin 98.8 5E-07 1.1E-11 93.0 19.0 232 10-271 1122-1383(1387)
260 COG5170 CDC55 Serine/threonine 98.7 3.2E-07 6.9E-12 82.5 14.1 273 1-314 28-366 (460)
261 KOG1240 Protein kinase contain 98.7 3.6E-06 7.7E-11 88.2 23.0 257 31-318 1034-1337(1431)
262 PF00930 DPPIV_N: Dipeptidyl p 98.7 2.6E-05 5.6E-10 75.6 27.1 268 58-340 1-343 (353)
263 KOG0642 Cell-cycle nuclear pro 98.7 3.9E-07 8.4E-12 87.9 13.6 242 49-318 294-564 (577)
264 KOG4547 WD40 repeat-containing 98.6 4.5E-06 9.8E-11 81.2 20.0 111 194-316 101-221 (541)
265 KOG1920 IkappaB kinase complex 98.6 3E-05 6.4E-10 81.7 26.8 261 2-292 71-347 (1265)
266 PF07433 DUF1513: Protein of u 98.6 6.7E-05 1.4E-09 69.3 26.2 233 4-256 9-276 (305)
267 KOG4227 WD40 repeat protein [G 98.6 1E-06 2.2E-11 81.4 13.1 139 193-342 54-212 (609)
268 KOG2041 WD40 repeat protein [G 98.6 5.7E-06 1.2E-10 82.2 18.2 237 1-272 117-372 (1189)
269 KOG0644 Uncharacterized conser 98.5 3.1E-07 6.7E-12 92.3 7.6 257 49-340 190-454 (1113)
270 PF08450 SGL: SMP-30/Gluconola 98.5 0.00073 1.6E-08 61.9 29.5 223 54-299 4-245 (246)
271 PF02897 Peptidase_S9_N: Proly 98.5 0.00033 7.2E-09 69.5 29.1 254 3-274 127-409 (414)
272 KOG1272 WD40-repeat-containing 98.4 5.3E-07 1.1E-11 85.1 7.5 173 114-316 147-324 (545)
273 KOG2041 WD40 repeat protein [G 98.4 2.3E-05 5E-10 78.0 19.0 260 2-298 17-327 (1189)
274 KOG0649 WD40 repeat protein [G 98.4 1E-05 2.2E-10 70.6 14.7 120 187-320 53-192 (325)
275 PF11768 DUF3312: Protein of u 98.4 0.00046 1E-08 68.0 26.8 159 146-314 150-328 (545)
276 PF14583 Pectate_lyase22: Olig 98.3 0.00073 1.6E-08 64.4 26.2 255 32-299 16-302 (386)
277 KOG3881 Uncharacterized conser 98.3 7.7E-05 1.7E-09 69.4 19.1 201 13-245 117-340 (412)
278 KOG1334 WD40 repeat protein [G 98.3 1.4E-05 3E-10 76.2 14.4 278 48-352 141-465 (559)
279 PF11768 DUF3312: Protein of u 98.3 0.00017 3.6E-09 71.1 22.1 73 192-269 256-329 (545)
280 PF07433 DUF1513: Protein of u 98.3 0.0018 3.8E-08 60.0 27.6 235 54-299 9-276 (305)
281 KOG1064 RAVE (regulator of V-A 98.3 3.7E-06 8E-11 91.1 10.3 188 87-317 2205-2400(2439)
282 KOG1310 WD40 repeat protein [G 98.3 6.2E-06 1.4E-10 79.6 10.6 140 193-343 48-219 (758)
283 KOG1240 Protein kinase contain 98.3 0.00012 2.6E-09 77.2 20.3 207 91-319 1049-1277(1431)
284 PF06433 Me-amine-dh_H: Methyl 98.3 0.0014 3E-08 61.5 25.3 252 4-280 40-331 (342)
285 PF08450 SGL: SMP-30/Gluconola 98.2 0.0027 5.9E-08 58.1 27.4 223 4-254 4-243 (246)
286 KOG1920 IkappaB kinase complex 98.2 0.00023 5.1E-09 75.2 21.9 259 51-338 70-348 (1265)
287 KOG0280 Uncharacterized conser 98.2 9.2E-05 2E-09 66.5 16.4 132 195-335 165-312 (339)
288 PF04053 Coatomer_WDAD: Coatom 98.2 9.3E-05 2E-09 73.1 18.0 163 144-342 35-213 (443)
289 KOG1354 Serine/threonine prote 98.2 4.2E-05 9.1E-10 70.0 13.7 247 50-342 26-347 (433)
290 KOG1409 Uncharacterized conser 98.2 0.00048 1E-08 63.3 20.2 72 194-270 196-271 (404)
291 PRK02888 nitrous-oxide reducta 98.2 0.00068 1.5E-08 68.4 23.1 121 195-320 320-479 (635)
292 PLN02919 haloacid dehalogenase 98.2 0.0012 2.7E-08 72.6 27.3 70 199-273 807-892 (1057)
293 KOG4547 WD40 repeat-containing 98.2 0.00022 4.8E-09 69.7 18.6 189 7-225 1-218 (541)
294 KOG1645 RING-finger-containing 98.1 0.00038 8.3E-09 65.2 18.8 72 1-81 195-269 (463)
295 PRK02888 nitrous-oxide reducta 98.1 0.0049 1.1E-07 62.4 27.5 102 203-316 284-405 (635)
296 PF02897 Peptidase_S9_N: Proly 98.1 0.0078 1.7E-07 59.7 29.1 249 54-316 128-405 (414)
297 PF00400 WD40: WD domain, G-be 98.1 1.5E-05 3.2E-10 50.1 5.8 36 272-313 2-39 (39)
298 PF04053 Coatomer_WDAD: Coatom 98.0 0.0014 2.9E-08 65.0 22.0 128 2-160 35-163 (443)
299 PRK13616 lipoprotein LpqB; Pro 98.0 0.00084 1.8E-08 69.0 21.1 164 91-269 350-527 (591)
300 KOG4532 WD40-like repeat conta 98.0 0.0025 5.5E-08 56.8 20.6 217 25-275 51-288 (344)
301 KOG2695 WD40 repeat protein [G 98.0 3.1E-05 6.6E-10 71.0 8.7 136 176-324 235-386 (425)
302 PRK10115 protease 2; Provision 98.0 0.014 3E-07 61.6 29.1 250 2-272 129-397 (686)
303 KOG0974 WD-repeat protein WDR6 97.9 0.00016 3.4E-09 75.1 13.9 114 191-318 171-291 (967)
304 PF06433 Me-amine-dh_H: Methyl 97.9 0.018 4E-07 54.1 27.0 262 26-322 17-328 (342)
305 PF15492 Nbas_N: Neuroblastoma 97.9 0.0033 7.2E-08 56.7 20.3 40 235-277 228-267 (282)
306 KOG3914 WD repeat protein WDR4 97.9 0.00023 5E-09 66.6 13.2 87 187-279 143-233 (390)
307 KOG0974 WD-repeat protein WDR6 97.9 0.00065 1.4E-08 70.7 17.2 191 7-271 95-290 (967)
308 PF00400 WD40: WD domain, G-be 97.9 5.7E-05 1.2E-09 47.3 5.9 32 233-267 8-39 (39)
309 KOG1064 RAVE (regulator of V-A 97.8 0.00022 4.7E-09 78.1 12.9 196 2-279 2211-2408(2439)
310 KOG0309 Conserved WD40 repeat- 97.8 0.00029 6.4E-09 70.7 11.8 285 2-322 27-346 (1081)
311 PRK13616 lipoprotein LpqB; Pro 97.7 0.0013 2.9E-08 67.6 16.7 160 143-318 351-530 (591)
312 KOG0280 Uncharacterized conser 97.7 0.0067 1.5E-07 54.9 18.4 129 198-337 124-266 (339)
313 KOG0882 Cyclophilin-related pe 97.7 0.0015 3.3E-08 62.1 15.0 246 10-277 19-313 (558)
314 KOG1912 WD40 repeat protein [G 97.7 0.0033 7.1E-08 63.8 17.7 259 3-314 19-303 (1062)
315 PF04841 Vps16_N: Vps16, N-ter 97.6 0.075 1.6E-06 52.5 26.6 71 5-79 34-110 (410)
316 KOG3617 WD40 and TPR repeat-co 97.6 0.0015 3.3E-08 66.7 14.2 111 5-127 21-132 (1416)
317 KOG1912 WD40 repeat protein [G 97.5 0.0052 1.1E-07 62.4 16.7 301 5-337 236-577 (1062)
318 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00021 4.6E-09 73.0 6.5 268 2-314 1104-1397(1516)
319 KOG3914 WD repeat protein WDR4 97.4 0.0028 6.2E-08 59.5 12.7 80 235-324 150-233 (390)
320 KOG4532 WD40-like repeat conta 97.4 0.0047 1E-07 55.2 13.2 115 215-338 134-264 (344)
321 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00019 4E-09 73.4 5.1 201 90-322 1101-1319(1516)
322 PF06977 SdiA-regulated: SdiA- 97.4 0.043 9.2E-07 50.0 20.0 196 2-224 24-247 (248)
323 KOG2114 Vacuolar assembly/sort 97.4 0.056 1.2E-06 55.9 22.1 226 56-298 30-272 (933)
324 KOG3617 WD40 and TPR repeat-co 97.4 0.00051 1.1E-08 70.0 7.7 110 200-318 20-136 (1416)
325 TIGR03300 assembly_YfgL outer 97.3 0.18 3.9E-06 49.3 26.0 95 215-322 247-346 (377)
326 COG3386 Gluconolactonase [Carb 97.3 0.12 2.7E-06 48.6 22.2 119 176-299 144-275 (307)
327 TIGR03300 assembly_YfgL outer 97.3 0.2 4.2E-06 49.0 24.6 92 206-312 278-376 (377)
328 COG3490 Uncharacterized protei 97.2 0.0062 1.4E-07 55.0 11.7 129 195-324 67-219 (366)
329 COG5170 CDC55 Serine/threonine 97.1 0.011 2.4E-07 53.9 12.5 235 50-316 27-310 (460)
330 KOG4640 Anaphase-promoting com 96.9 0.0052 1.1E-07 61.1 9.4 88 196-288 21-114 (665)
331 PF15390 DUF4613: Domain of un 96.8 0.046 9.9E-07 54.5 14.8 150 52-226 22-185 (671)
332 PF10647 Gmad1: Lipoprotein Lp 96.8 0.16 3.5E-06 46.6 18.0 143 143-299 25-185 (253)
333 COG3391 Uncharacterized conser 96.7 0.66 1.4E-05 45.4 32.2 283 27-341 12-315 (381)
334 KOG2066 Vacuolar assembly/sort 96.7 0.022 4.8E-07 58.3 12.2 121 204-340 80-221 (846)
335 PF00780 CNH: CNH domain; Int 96.7 0.51 1.1E-05 43.7 29.0 231 10-284 6-270 (275)
336 PF04841 Vps16_N: Vps16, N-ter 96.7 0.73 1.6E-05 45.6 22.8 38 118-159 61-98 (410)
337 KOG4640 Anaphase-promoting com 96.6 0.01 2.2E-07 59.1 9.1 89 238-336 22-117 (665)
338 COG3204 Uncharacterized protei 96.6 0.54 1.2E-05 43.2 19.8 148 2-160 88-251 (316)
339 PRK10115 protease 2; Provision 96.6 1.2 2.7E-05 47.1 30.2 244 52-316 129-395 (686)
340 PF10647 Gmad1: Lipoprotein Lp 96.5 0.63 1.4E-05 42.7 20.8 146 2-160 26-183 (253)
341 KOG4714 Nucleoporin [Nuclear s 96.5 0.093 2E-06 46.9 13.4 70 197-270 181-255 (319)
342 KOG4190 Uncharacterized conser 96.5 0.018 3.9E-07 56.3 9.9 113 195-319 876-992 (1034)
343 KOG0309 Conserved WD40 repeat- 96.5 0.033 7.1E-07 56.6 11.7 116 193-318 112-235 (1081)
344 PF06977 SdiA-regulated: SdiA- 96.5 0.64 1.4E-05 42.4 20.2 162 143-323 23-209 (248)
345 KOG0882 Cyclophilin-related pe 96.5 0.028 6E-07 53.9 10.3 119 214-341 117-257 (558)
346 KOG1645 RING-finger-containing 96.3 0.011 2.4E-07 55.8 6.7 74 235-316 192-267 (463)
347 KOG2114 Vacuolar assembly/sort 96.3 1.4 3E-05 46.2 21.7 220 6-255 30-272 (933)
348 PF07995 GSDH: Glucose / Sorbo 96.2 1.2 2.6E-05 42.7 24.9 242 51-299 4-325 (331)
349 PF13360 PQQ_2: PQQ-like domai 96.2 0.9 1.9E-05 40.8 24.8 98 207-319 122-235 (238)
350 KOG2695 WD40 repeat protein [G 96.2 0.03 6.6E-07 51.9 8.8 88 187-280 290-387 (425)
351 KOG3621 WD40 repeat-containing 96.1 0.15 3.2E-06 51.8 13.7 164 55-240 39-210 (726)
352 KOG4190 Uncharacterized conser 96.1 0.017 3.6E-07 56.6 6.9 180 115-318 754-951 (1034)
353 smart00320 WD40 WD40 repeats. 96.0 0.024 5.2E-07 33.6 5.4 27 281-313 14-40 (40)
354 PF15390 DUF4613: Domain of un 95.8 0.51 1.1E-05 47.3 15.9 111 195-316 56-187 (671)
355 PF12894 Apc4_WD40: Anaphase-p 95.8 0.023 4.9E-07 37.1 4.5 34 281-320 13-46 (47)
356 KOG2066 Vacuolar assembly/sort 95.7 0.2 4.3E-06 51.7 13.0 129 10-160 82-223 (846)
357 smart00320 WD40 WD40 repeats. 95.6 0.043 9.4E-07 32.4 5.3 30 235-267 11-40 (40)
358 KOG4714 Nucleoporin [Nuclear s 95.5 0.022 4.8E-07 50.8 4.7 76 237-320 180-259 (319)
359 COG3490 Uncharacterized protei 95.4 2.1 4.5E-05 39.3 20.0 232 34-278 56-319 (366)
360 KOG3621 WD40 repeat-containing 95.2 0.074 1.6E-06 53.9 8.0 109 197-316 35-155 (726)
361 KOG1275 PAB-dependent poly(A) 95.1 0.72 1.6E-05 48.5 14.5 178 26-227 157-342 (1118)
362 COG5290 IkappaB kinase complex 95.0 0.2 4.3E-06 51.7 10.1 104 4-108 251-354 (1243)
363 PF12894 Apc4_WD40: Anaphase-p 94.9 0.083 1.8E-06 34.4 5.0 34 236-273 11-44 (47)
364 PF13360 PQQ_2: PQQ-like domai 94.9 2.7 5.8E-05 37.7 23.1 67 7-82 32-98 (238)
365 TIGR02171 Fb_sc_TIGR02171 Fibr 94.8 1.3 2.9E-05 47.1 16.1 243 26-283 329-601 (912)
366 PF10313 DUF2415: Uncharacteri 94.6 0.11 2.4E-06 32.8 4.8 31 1-36 2-35 (43)
367 COG3204 Uncharacterized protei 94.6 1.1 2.4E-05 41.2 12.9 113 195-317 85-212 (316)
368 COG1506 DAP2 Dipeptidyl aminop 94.5 7.3 0.00016 40.9 28.0 291 3-314 16-343 (620)
369 PF03178 CPSF_A: CPSF A subuni 94.5 4.5 9.8E-05 38.5 20.7 109 194-316 87-203 (321)
370 PF08553 VID27: VID27 cytoplas 94.5 0.82 1.8E-05 48.4 13.7 123 176-314 505-646 (794)
371 KOG1275 PAB-dependent poly(A) 94.5 0.18 3.8E-06 52.8 8.6 95 215-314 153-253 (1118)
372 TIGR02604 Piru_Ver_Nterm putat 94.3 3 6.5E-05 40.6 16.6 98 196-298 72-202 (367)
373 PRK11138 outer membrane biogen 94.1 6.5 0.00014 38.6 25.0 92 207-313 294-392 (394)
374 KOG2079 Vacuolar assembly/sort 94.1 0.18 3.8E-06 53.7 7.7 83 214-299 104-195 (1206)
375 COG3386 Gluconolactonase [Carb 94.0 5.7 0.00012 37.5 22.9 224 7-255 32-274 (307)
376 COG3391 Uncharacterized conser 93.8 7.1 0.00015 38.2 30.2 204 54-279 78-293 (381)
377 PF08553 VID27: VID27 cytoplas 93.8 1.3 2.7E-05 47.1 13.5 123 25-161 503-638 (794)
378 KOG1409 Uncharacterized conser 93.3 7.2 0.00016 36.7 18.7 97 215-320 171-275 (404)
379 PF12234 Rav1p_C: RAVE protein 93.2 1.2 2.6E-05 46.0 12.0 95 208-314 41-155 (631)
380 COG5290 IkappaB kinase complex 93.2 2.6 5.6E-05 43.9 13.9 101 195-299 246-356 (1243)
381 PF14783 BBS2_Mid: Ciliary BBS 93.1 3.4 7.5E-05 32.3 12.7 98 148-265 9-110 (111)
382 KOG2377 Uncharacterized conser 93.0 3 6.6E-05 40.7 13.4 99 194-299 65-173 (657)
383 PF10214 Rrn6: RNA polymerase 92.9 8.1 0.00018 41.7 18.3 112 193-317 77-234 (765)
384 KOG2280 Vacuolar assembly/sort 92.8 5.1 0.00011 41.6 15.4 50 26-79 64-113 (829)
385 PF05694 SBP56: 56kDa selenium 92.7 11 0.00024 37.1 26.7 229 60-299 86-393 (461)
386 KOG4649 PQQ (pyrrolo-quinoline 92.4 8.3 0.00018 35.0 22.2 71 11-91 63-134 (354)
387 KOG2395 Protein involved in va 92.0 1.9 4.2E-05 42.7 11.0 127 176-314 357-499 (644)
388 PF05096 Glu_cyclase_2: Glutam 91.9 6.2 0.00013 36.1 13.5 133 10-159 100-248 (264)
389 PF05096 Glu_cyclase_2: Glutam 91.8 10 0.00022 34.8 14.8 74 3-82 48-122 (264)
390 KOG3630 Nuclear pore complex, 91.6 1 2.2E-05 48.5 9.2 137 192-336 97-255 (1405)
391 KOG2395 Protein involved in va 91.2 2.7 6E-05 41.7 11.0 121 26-160 356-490 (644)
392 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.6 3.5E-05 27.1 6.6 40 246-287 1-41 (42)
393 PF07569 Hira: TUP1-like enhan 90.9 0.97 2.1E-05 40.5 7.4 68 5-77 16-94 (219)
394 KOG2079 Vacuolar assembly/sort 90.8 0.63 1.4E-05 49.8 6.8 69 2-77 133-202 (1206)
395 PF07676 PD40: WD40-like Beta 90.7 0.64 1.4E-05 28.6 4.4 29 281-312 10-38 (39)
396 KOG1008 Uncharacterized conser 90.4 0.12 2.6E-06 51.9 1.2 147 3-160 106-262 (783)
397 TIGR02171 Fb_sc_TIGR02171 Fibr 90.3 2.2 4.7E-05 45.5 10.2 77 176-252 330-414 (912)
398 PF14783 BBS2_Mid: Ciliary BBS 90.2 7.5 0.00016 30.4 13.9 82 209-299 17-104 (111)
399 PF07676 PD40: WD40-like Beta 89.6 1 2.3E-05 27.6 4.7 31 236-266 8-38 (39)
400 PF10313 DUF2415: Uncharacteri 89.3 1.4 2.9E-05 28.0 4.8 31 237-270 1-34 (43)
401 PF07569 Hira: TUP1-like enhan 89.1 2.8 6E-05 37.6 8.8 67 242-318 16-98 (219)
402 KOG4649 PQQ (pyrrolo-quinoline 89.0 12 0.00026 34.0 12.4 100 204-314 19-122 (354)
403 TIGR02276 beta_rpt_yvtn 40-res 88.8 2.7 5.9E-05 26.0 6.3 32 9-44 1-32 (42)
404 PF10168 Nup88: Nuclear pore c 88.8 9.8 0.00021 40.4 13.8 33 236-271 146-181 (717)
405 KOG2247 WD40 repeat-containing 88.2 0.074 1.6E-06 51.8 -2.0 135 145-297 38-177 (615)
406 KOG3630 Nuclear pore complex, 88.1 11 0.00024 41.2 13.4 59 195-255 198-262 (1405)
407 KOG2444 WD40 repeat protein [G 87.4 2.3 4.9E-05 37.7 6.8 85 215-314 76-165 (238)
408 PF10168 Nup88: Nuclear pore c 87.4 2.6 5.6E-05 44.7 8.5 69 237-315 85-179 (717)
409 PF03088 Str_synth: Strictosid 87.3 10 0.00022 28.5 9.5 41 259-299 35-76 (89)
410 PF00780 CNH: CNH domain; Int 86.8 25 0.00055 32.3 24.1 61 60-128 6-66 (275)
411 PF12657 TFIIIC_delta: Transcr 86.7 4.5 9.7E-05 34.7 8.4 31 281-317 87-123 (173)
412 PF07995 GSDH: Glucose / Sorbo 86.0 15 0.00032 35.2 12.4 99 198-299 4-133 (331)
413 COG1506 DAP2 Dipeptidyl aminop 85.7 51 0.0011 34.7 26.4 56 2-66 62-117 (620)
414 KOG2280 Vacuolar assembly/sort 85.4 52 0.0011 34.6 16.0 170 119-316 65-247 (829)
415 KOG2247 WD40 repeat-containing 84.9 0.13 2.7E-06 50.3 -2.3 134 199-342 38-177 (615)
416 TIGR02604 Piru_Ver_Nterm putat 84.7 24 0.00053 34.3 13.5 140 197-342 15-201 (367)
417 PF14870 PSII_BNR: Photosynthe 84.4 37 0.0008 32.0 17.5 129 194-335 143-286 (302)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 83.2 12 0.00026 36.9 10.5 82 237-324 308-408 (415)
419 TIGR03606 non_repeat_PQQ dehyd 82.8 55 0.0012 32.8 18.9 61 195-255 78-164 (454)
420 KOG1008 Uncharacterized conser 82.1 0.78 1.7E-05 46.4 1.8 70 54-127 200-276 (783)
421 PF14870 PSII_BNR: Photosynthe 80.8 51 0.0011 31.1 14.7 92 235-336 143-244 (302)
422 PF05935 Arylsulfotrans: Aryls 80.5 33 0.00071 34.8 12.9 77 217-299 126-209 (477)
423 PF05694 SBP56: 56kDa selenium 80.3 63 0.0014 32.0 13.8 184 57-255 137-392 (461)
424 PF14269 Arylsulfotran_2: Aryl 79.6 56 0.0012 30.8 16.9 68 238-314 145-219 (299)
425 PLN00033 photosystem II stabil 79.5 67 0.0015 31.7 17.7 102 189-298 274-389 (398)
426 TIGR03606 non_repeat_PQQ dehyd 79.4 72 0.0016 32.0 18.2 51 50-101 31-89 (454)
427 PF15359 CDV3: Carnitine defic 78.5 2 4.3E-05 34.7 2.7 16 377-392 83-98 (129)
428 KOG1897 Damage-specific DNA bi 78.0 1.1E+02 0.0024 33.4 27.0 227 56-294 677-928 (1096)
429 PLN00033 photosystem II stabil 77.7 76 0.0016 31.3 15.2 128 197-338 240-384 (398)
430 PRK13684 Ycf48-like protein; P 77.7 68 0.0015 30.7 14.1 98 194-298 171-278 (334)
431 PF12657 TFIIIC_delta: Transcr 77.5 11 0.00023 32.3 7.3 26 53-79 8-33 (173)
432 KOG1897 Damage-specific DNA bi 77.4 1.2E+02 0.0025 33.2 29.0 109 197-317 776-900 (1096)
433 PF13449 Phytase-like: Esteras 77.3 69 0.0015 30.6 18.7 63 4-67 89-164 (326)
434 KOG4499 Ca2+-binding protein R 77.0 56 0.0012 29.4 13.7 87 198-288 160-262 (310)
435 TIGR03032 conserved hypothetic 76.5 52 0.0011 31.0 11.6 84 247-336 212-316 (335)
436 PF11715 Nup160: Nucleoporin N 75.9 5.4 0.00012 41.2 5.8 37 3-44 218-258 (547)
437 PF01731 Arylesterase: Arylest 75.5 18 0.00038 27.0 6.9 32 237-270 54-85 (86)
438 PF01731 Arylesterase: Arylest 75.4 16 0.00034 27.3 6.6 48 261-315 36-84 (86)
439 COG3823 Glutamine cyclotransfe 75.2 58 0.0013 28.8 10.7 60 12-83 103-163 (262)
440 COG1770 PtrB Protease II [Amin 74.8 1.1E+02 0.0025 31.9 27.7 60 3-67 132-191 (682)
441 PRK11138 outer membrane biogen 74.7 88 0.0019 30.6 27.9 93 217-322 264-361 (394)
442 COG5167 VID27 Protein involved 74.7 51 0.0011 33.1 11.5 122 26-160 490-622 (776)
443 KOG4460 Nuclear pore complex, 74.6 15 0.00032 36.8 7.9 69 239-316 106-199 (741)
444 PF14727 PHTB1_N: PTHB1 N-term 74.5 95 0.0021 30.8 15.5 109 193-314 69-203 (418)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 74.0 15 0.00032 36.3 7.9 40 2-46 310-349 (415)
446 PF08596 Lgl_C: Lethal giant l 73.5 65 0.0014 31.7 12.3 71 234-314 84-172 (395)
447 KOG4499 Ca2+-binding protein R 73.4 70 0.0015 28.8 18.5 129 195-334 108-263 (310)
448 COG5167 VID27 Protein involved 73.3 37 0.00081 34.0 10.2 57 249-315 574-632 (776)
449 COG1770 PtrB Protease II [Amin 72.2 1.3E+02 0.0028 31.4 26.6 204 54-275 133-354 (682)
450 PF12234 Rav1p_C: RAVE protein 67.0 40 0.00087 35.2 9.5 69 193-268 70-155 (631)
451 PF03088 Str_synth: Strictosid 66.4 50 0.0011 24.8 7.6 41 217-257 35-77 (89)
452 KOG1520 Predicted alkaloid syn 65.8 58 0.0013 31.4 9.7 85 210-297 190-282 (376)
453 COG5276 Uncharacterized conser 65.5 1.2E+02 0.0026 28.4 25.0 108 3-128 90-201 (370)
454 PF15525 DUF4652: Domain of un 64.5 95 0.0021 26.9 10.9 74 206-279 68-158 (200)
455 PF14761 HPS3_N: Hermansky-Pud 63.9 1.1E+02 0.0023 27.2 14.7 49 218-266 37-92 (215)
456 KOG2444 WD40 repeat protein [G 63.9 22 0.00048 31.7 6.0 54 214-270 119-178 (238)
457 KOG2100 Dipeptidyl aminopeptid 63.3 65 0.0014 34.7 10.7 107 148-257 103-227 (755)
458 PF10008 DUF2251: Uncharacteri 62.7 29 0.00062 26.3 5.6 26 54-79 59-85 (97)
459 COG4257 Vgb Streptogramin lyas 61.2 1.4E+02 0.003 27.7 13.0 112 177-299 85-208 (353)
460 TIGR02608 delta_60_rpt delta-6 57.1 55 0.0012 22.0 5.7 19 239-257 3-21 (55)
461 KOG2377 Uncharacterized conser 54.9 2.3E+02 0.005 28.3 20.6 158 55-231 28-189 (657)
462 KOG4460 Nuclear pore complex, 54.6 2.1E+02 0.0046 29.1 11.5 32 239-273 168-202 (741)
463 KOG1230 Protein containing rep 54.4 2.2E+02 0.0049 28.0 15.0 79 220-300 155-252 (521)
464 PF14761 HPS3_N: Hermansky-Pud 54.2 51 0.0011 29.2 6.6 48 249-299 29-79 (215)
465 PF10584 Proteasome_A_N: Prote 53.5 3.7 8.1E-05 22.1 -0.3 9 6-14 7-15 (23)
466 PF05935 Arylsulfotrans: Aryls 53.4 2.6E+02 0.0056 28.3 16.4 41 238-280 272-312 (477)
467 PF07250 Glyoxal_oxid_N: Glyox 52.7 1.8E+02 0.004 26.4 10.9 110 198-318 69-200 (243)
468 KOG2100 Dipeptidyl aminopeptid 50.9 3.6E+02 0.0077 29.3 20.8 45 25-69 72-116 (755)
469 cd00216 PQQ_DH Dehydrogenases 48.3 3.1E+02 0.0067 27.8 27.4 101 214-323 306-433 (488)
470 PF03178 CPSF_A: CPSF A subuni 47.9 2.4E+02 0.0053 26.5 25.6 68 195-269 129-202 (321)
471 PF07250 Glyoxal_oxid_N: Glyox 47.6 67 0.0014 29.2 6.6 80 220-299 47-137 (243)
472 KOG4305 RhoGEF GTPase [Signal 47.0 2.9E+02 0.0063 30.8 12.1 62 231-299 948-1013(1029)
473 KOG1983 Tomosyn and related SN 45.6 4.9E+02 0.011 29.3 14.2 48 261-317 219-266 (993)
474 KOG1916 Nuclear protein, conta 45.3 31 0.00068 37.0 4.6 68 196-268 181-264 (1283)
475 smart00564 PQQ beta-propeller 44.9 58 0.0012 18.5 4.1 25 250-277 8-32 (33)
476 PF13449 Phytase-like: Esteras 44.4 2.9E+02 0.0062 26.3 19.0 114 199-315 88-249 (326)
477 PF05787 DUF839: Bacterial pro 40.7 98 0.0021 31.8 7.4 19 281-299 503-521 (524)
478 PRK13615 lipoprotein LpqB; Pro 39.8 4.5E+02 0.0098 27.3 13.8 75 195-269 416-502 (557)
479 PF01436 NHL: NHL repeat; Int 38.2 71 0.0015 17.8 3.5 15 3-17 5-19 (28)
480 PRK13614 lipoprotein LpqB; Pro 37.9 4.9E+02 0.011 27.1 19.3 144 2-160 345-503 (573)
481 PRK13613 lipoprotein LpqB; Pro 37.6 5.1E+02 0.011 27.2 21.6 185 2-208 365-564 (599)
482 KOG4325 Uncharacterized conser 37.0 33 0.00072 28.4 2.6 20 405-424 88-107 (212)
483 COG4590 ABC-type uncharacteriz 37.0 1.5E+02 0.0033 29.5 7.4 51 260-317 337-388 (733)
484 PF14939 DCAF15_WD40: DDB1-and 36.9 99 0.0021 27.3 5.7 39 4-42 35-81 (211)
485 PF12768 Rax2: Cortical protei 34.2 3.9E+02 0.0085 24.9 11.1 97 221-321 18-127 (281)
486 COG4247 Phy 3-phytase (myo-ino 33.3 57 0.0012 29.7 3.7 42 286-333 62-103 (364)
487 KOG1916 Nuclear protein, conta 32.9 23 0.00051 37.9 1.5 68 240-317 184-269 (1283)
488 PF11715 Nup160: Nucleoporin N 32.3 1E+02 0.0022 31.8 6.1 37 238-277 216-256 (547)
489 PF02095 Extensin_1: Extensin- 32.2 25 0.00055 14.8 0.7 6 381-386 2-7 (10)
490 PF05787 DUF839: Bacterial pro 32.2 1.5E+02 0.0032 30.5 7.1 18 50-67 502-519 (524)
491 PF13418 Kelch_4: Galactose ox 32.0 54 0.0012 20.9 2.7 28 245-272 10-40 (49)
492 KOG1520 Predicted alkaloid syn 30.9 5.1E+02 0.011 25.2 12.7 100 196-299 115-238 (376)
493 PHA03098 kelch-like protein; P 30.4 3.3E+02 0.0072 27.8 9.6 53 220-272 407-467 (534)
494 smart00135 LY Low-density lipo 30.0 1.3E+02 0.0027 18.0 5.1 32 281-317 10-41 (43)
495 PF10214 Rrn6: RNA polymerase 30.0 7.5E+02 0.016 26.9 24.7 158 50-228 80-277 (765)
496 PF10411 DsbC_N: Disulfide bon 28.9 73 0.0016 21.5 2.9 13 6-18 37-49 (57)
497 KOG1900 Nuclear pore complex, 28.4 8.5E+02 0.018 28.0 12.1 70 195-270 178-273 (1311)
498 COG2133 Glucose/sorbosone dehy 27.5 2.1E+02 0.0046 28.1 6.9 61 239-299 179-258 (399)
499 PF11725 AvrE: Pathogenicity f 27.2 1.1E+03 0.024 28.0 13.3 36 87-127 434-469 (1774)
500 PF01011 PQQ: PQQ enzyme repea 27.1 1.5E+02 0.0032 17.8 4.0 22 259-280 8-29 (38)
No 1
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-78 Score=566.98 Aligned_cols=351 Identities=46% Similarity=0.775 Sum_probs=320.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCC-----CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d-----~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~ 76 (434)
+++|.|||.|+||.||++++...+ .++.+|+++++.....+..+.+ ..| +++||.|+.++|+...+++++|+
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~~W-~~qfs~dEsl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--NGW-VPQFSIDESLAARLVSNEVQFYD 152 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--cCc-ccccccchhhhhhhhcceEEEEe
Confidence 467999999999999998765433 5788999999766666766644 779 99999999999999999999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+.++.. ...+++.++|..+++||+ ..+.+|+|+|+.+|.|+.|+||.++...+.+++++++||+++.++|.||+.|+.
T Consensus 153 ~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 153 LGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred cCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 998664 678999999999999999 457899999999999999999999965568999999999999999999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~ 235 (434)
||+++++|+|+++++|||+++||++.+.| .++.|+|.++||||++.|+|+|++|+||||+||++++|||++|+++++|+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~ 310 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP 310 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecC-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC
Confidence 99999999999999999999999999985 48999999999999999999999999999999999999999999999999
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.+++|++.|||+|++|++|||||+.|.|+|||+.+.++|..+.+.+.+.++|+|||+||+||+++|||||||+++||||+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeeeeecc-cceeeEEEcCCCCCCCCchhhhhccCccccccc
Q 013884 316 GSLFFKKMFD-KLFQAEWKPVSPDKFGDISELIKSVGSLKVAET 358 (434)
Q Consensus 316 g~~~~~~~~~-~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~ 358 (434)
|.++++.++. |||++.|+|....++.. ..+++.-.+.+++++
T Consensus 391 G~~l~~~~f~sEL~qv~W~P~~~~~~~~-~~i~~~~~~~~~~~~ 433 (566)
T KOG2315|consen 391 GSLLHEKMFKSELLQVEWRPFNDKTGNE-EEITELEHPSKNPEG 433 (566)
T ss_pred CceeehhhhhHhHhheeeeecCCcccch-hhhhhhcccccCCCC
Confidence 9999999998 79999999998886654 344433333333333
No 2
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=100.00 E-value=7.4e-57 Score=418.11 Aligned_cols=331 Identities=27% Similarity=0.501 Sum_probs=298.9
Q ss_pred cceEEecCCCcEEEEEecCCC----------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013884 2 LLLLTCLRVGLIIQTFQKSST----------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|..+.|||.|+||+||++... ..+.++.|||+.+|..+.+|......+..|+.++||.|++|+|+...+.
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence 567899999999999997433 1235799999999999999988766556999999999999999999999
Q ss_pred EEEEe-CCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 72 IQFFD-TTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 72 i~v~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
++|++ ..+........++..+|..|+|||.+ ...+|+|+|+..+.|++++||.++. +..+.++++++.+.++++|
T Consensus 154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEeecccEEEE
Confidence 99999 55555556667888899999999984 4568999999999999999999997 8999999999999999999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~ 229 (434)
++.|++||+++.++. +++++|||+.+||++++.+. +..+.++..++|++++|+|++++|++|+|.||..+.+||++++
T Consensus 231 ~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 231 QVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 999999999999988 99999999999999988754 6777766689999999999999999999999999999999999
Q ss_pred eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013884 230 PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 230 ~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~ 308 (434)
..+.+..+..|++.|||.+++++++||||+.|.|.|||..+. +++..+.+.+...|.|||||+|+.+++++||+|+|+.
T Consensus 309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 988999999999999999999999999999999999998876 5666899999999999999999999999999999999
Q ss_pred EEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013884 309 IKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 309 i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
|+|||+.|..++ +++++.|+|.+++....
T Consensus 389 i~l~~v~g~~~f-----el~~~~W~p~~~~~tts 417 (561)
T COG5354 389 IKLWDVYGAKVF-----ELTNITWDPSGQYVTTS 417 (561)
T ss_pred eEEEEecCchhh-----hhhhccccCCcccceee
Confidence 999999999887 79999999976655443
No 3
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-46 Score=347.11 Aligned_cols=340 Identities=23% Similarity=0.439 Sum_probs=287.1
Q ss_pred cceEEecCCCcEEEEEecCCCC------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTP------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~ 75 (434)
|..+.|||+.+||+|+++.... +...++|||+.+|...++|.........||.+.||.|++|+|++..+.|.||
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy 331 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY 331 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence 5678999999999999964322 2368999999999999999873333478999999999999999999999999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+.+.+.......+.+++|+.|+|||. +..||+|+|+....|+++.|..+|. ++.|++++.|+...|.|.|..+|.+
T Consensus 332 Etpsf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 332 ETPSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred ecCceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcE
Confidence 99998877778899999999999999 8999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccc---
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC--- 228 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~--- 228 (434)
||+-+........+. ..+.+++....+..+++. -..+|..++|.|.|+.|++++|.... ++.+|..+.
T Consensus 408 LcvkvdR~tK~~~~g-----~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKG-----QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred EEEEEEeeccccccc-----eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 999855422111122 223344444344445543 36789999999999999999998665 788887652
Q ss_pred --eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884 229 --RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 229 --~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
..+..+.....|++.|||.|+++++++..+..|+++++|+. +.+.+....+...+.+.|.|.|||++|+++.+|+.
T Consensus 483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 33556678889999999999999999987778999999988 56677777777888899999999999999999999
Q ss_pred eCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc--hhhhhcc
Q 013884 305 IDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV 350 (434)
Q Consensus 305 ~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~--~~~~~~~ 350 (434)
+|++++||++.|+++.+...+++.|+.|||.||.+++.. .++.|++
T Consensus 563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnL 610 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNL 610 (698)
T ss_pred cccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999983 4555555
No 4
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=100.00 E-value=8.6e-41 Score=293.79 Aligned_cols=194 Identities=47% Similarity=0.911 Sum_probs=185.0
Q ss_pred eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013884 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~ 216 (434)
+++++++.+.|.|+++|++||+.++++.|+++++|||+..||+++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus 1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 35788899999999999999999999999999999999999999888877888888888899999999999999999999
Q ss_pred CCCeEEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEE
Q 013884 217 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 217 ~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
+++++.|||+++..+.+++...+|+|.|||+|++|+++|+++..|.|.|||+++.+.+...++..++.++|||||++|++
T Consensus 81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889889999999999999
Q ss_pred EEcCCceeeCCcEEEEeecCceeeeeecccceee
Q 013884 297 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA 330 (434)
Q Consensus 297 as~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~ 330 (434)
+++.||+++||+++||+++|+++++..+++|+++
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~ 194 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV 194 (194)
T ss_pred EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence 9999999999999999999999999999999875
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=293.88 Aligned_cols=310 Identities=17% Similarity=0.259 Sum_probs=242.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.|++|||+|++|+|++ .|.++++||+.+...+.++..+. .-|.|++|||||+.+|++ .+|+|++||....
T Consensus 118 Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~KgH~---~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCKGHK---NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred EEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeecCCc---cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 78999999999999988 89999999999999888887754 677899999999999999 5789999998765
Q ss_pred CC-ceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 81 PK-GILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~-~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+. +.....|...|.+++|-|-.- ..+| +.+.++.|+||++.. +..+...+.|...+++++|..+|
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~la-----s~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g-- 259 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLA-----SSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG-- 259 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCcccee-----cccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--
Confidence 43 345567778899999998631 2233 457789999999988 88999999999999999998665
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceee---eecCCCCCeEEEEECcCCCE-----------------------
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRKEGPVHDVQWSYSGSE----------------------- 209 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~~~~i~~~~wspdg~~----------------------- 209 (434)
+ +.+...|.+++.|....+.. +....++... +.+..+.....-+|.|.+++
T Consensus 260 l--iySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 260 L--IYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred e--EEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 3 44555788888775433211 1111222111 11222222233344455554
Q ss_pred --EEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884 210 --FAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 210 --~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
++ +|+.|.++.+|+-. .+++..+ |..-||.+.|||||++||+|+||+ .|++||..+|+.+.++.+| .
T Consensus 337 erlV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---SVkLW~g~tGk~lasfRGHv~~ 411 (480)
T KOG0271|consen 337 ERLV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---SVKLWDGRTGKFLASFRGHVAA 411 (480)
T ss_pred ceeE--EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc---ceeeeeCCCcchhhhhhhccce
Confidence 44 79999999999863 3344433 788899999999999999999987 8999999999999999988 4
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013884 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+..++||.|.|.|++++. |.+++||++..+.+... +.+|+|.+.|+|++..+.+.+
T Consensus 412 VYqvawsaDsRLlVS~Sk------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSK------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred eEEEEeccCccEEEEcCC------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 555999999999999999 99999999988776654 568999999999998888775
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=254.59 Aligned_cols=271 Identities=13% Similarity=0.178 Sum_probs=227.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~-~~~~i~v~~~~ 78 (434)
|..+.||+|++.|+|++ .++.++||++.++..+.+|.++. ..+.++.|.|. +..+|++ .|+++++|++.
T Consensus 178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56789999999999999 99999999999999999998865 56669999996 5677877 58899999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+.........|...|..++|+|+ +.+++. ...+.+-++||+.+ +..+....+|...+.+++|++||..+
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs-G~~L~T-----asfD~tWRlWD~~t---k~ElL~QEGHs~~v~~iaf~~DGSL~-- 318 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS-GKFLGT-----ASFDSTWRLWDLET---KSELLLQEGHSKGVFSIAFQPDGSLA-- 318 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC-Cceeee-----cccccchhhccccc---chhhHhhcccccccceeEecCCCcee--
Confidence 86655667778888999999999 556653 45566889999998 88888899999999999999999963
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc--
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~-- 234 (434)
+++..|..++.|+-.+ + .+.+.|. |..+|++|+|||+|-++| +|+.|++++|||++.. .+..+
T Consensus 319 -~tGGlD~~~RvWDlRt---------g-r~im~L~gH~k~I~~V~fsPNGy~lA--Tgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 319 -ATGGLDSLGRVWDLRT---------G-RCIMFLAGHIKEILSVAFSPNGYHLA--TGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred -eccCccchhheeeccc---------C-cEEEEecccccceeeEeECCCceEEe--ecCCCCcEEEeeecccccceeccc
Confidence 4455788887553221 1 2333332 578999999999999998 7999999999999743 34554
Q ss_pred CCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 235 GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|..-|..+.|+| .|.+|+++++|+ +++||...++.++..+.+| .+.+++.||||.+|+|++. |++||+
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~------DRT~KL 456 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF------DRTIKL 456 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCc---ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc------Cceeee
Confidence 788899999999 788999999776 9999999999999999988 6777999999999999999 999999
Q ss_pred Ee
Q 013884 312 FH 313 (434)
Q Consensus 312 w~ 313 (434)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.6e-30 Score=229.91 Aligned_cols=279 Identities=13% Similarity=0.165 Sum_probs=210.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v 74 (434)
|.||+|||||+.|++++ .|+.|++||.++|+++. .+.+ |...+.+++|-| ..++||++ .||+|+|
T Consensus 160 VlcvawsPDgk~iASG~-----~dg~I~lwdpktg~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS-----KDGSIRLWDPKTGQQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred EEEEEECCCcchhhccc-----cCCeEEEecCCCCCcccccccC---cccceeEEeecccccCCCccceecccCCCCEEE
Confidence 78999999999999998 89999999999998765 4544 346777899965 67888888 4789999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||+...........|...|+++.|--+ .+|. ++.++.+|++|+... +..+..+..|..-+..++.|.+
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~--gliy-----SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTd-- 299 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGGE--GLIY-----SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTD-- 299 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcCC--ceEE-----ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccch--
Confidence 999876655566677788999999744 3333 467889999999977 6777777777777777766532
Q ss_pred eEEEEEEecccccCce----------------------------eecceeEEEEeeCCCceeee-ecCCCCCeEEEEECc
Q 013884 155 GLLAVAQSDVDKTNQS----------------------------YYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSY 205 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~----------------------------~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wsp 205 (434)
++ +-....|.++.. -....+|++++-...+.... ...|...|+.+.|||
T Consensus 300 y~--LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 300 YV--LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred hh--hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 11 000111111111 01122455554332221111 123567899999999
Q ss_pred CCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884 206 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
|++++| +++.|..|++||.+ ++.+.+| |-++|..++||.|.++|++++.| .++++||+++.++...+.+|
T Consensus 378 d~r~IA--SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD---sTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 378 DGRYIA--SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD---STLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred CccEEE--EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC---ceEEEEEeeeeeecccCCCCCc
Confidence 999999 68889999999996 4555566 78899999999999999999955 59999999999999999877
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
.+..+.|||||..+++++. |..++||.
T Consensus 453 EVf~vDwspDG~rV~sggk------dkv~~lw~ 479 (480)
T KOG0271|consen 453 EVFAVDWSPDGQRVASGGK------DKVLRLWR 479 (480)
T ss_pred eEEEEEecCCCceeecCCC------ceEEEeec
Confidence 5667999999999999999 99999996
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=213.72 Aligned_cols=270 Identities=13% Similarity=0.155 Sum_probs=213.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.++.||+|+++|++.+ .|+.+.|||.-|...++.++... .-|..++|||.|+++|++ .||...||++...
T Consensus 58 i~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred eeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCc---eeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 78999999999999999 99999999999999999888764 556688999999999998 5889999999754
Q ss_pred CCc---ee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CC
Q 013884 81 PKG---IL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GS 153 (434)
Q Consensus 81 ~~~---~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G 153 (434)
... .+ ...|..-+.++.|-++ +.++ ++..+.++-+|++++ ++.+.....|.+++..+..+| ++
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~dD-~~il------T~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLDD-NHIL------TGSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcCC-CceE------ecCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCC
Confidence 211 11 1223334666666664 3333 245567999999999 889999999999999999999 77
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eE
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~ 231 (434)
+.. .+...|++-+ ||.+. .. .+...+ .++..|+++.|.|+|.-|+ +|+.|+..++||++.. ++
T Consensus 200 ntF---vSg~cD~~ak-------lWD~R--~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 200 NTF---VSGGCDKSAK-------LWDVR--SG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQEL 264 (343)
T ss_pred CeE---Eeccccccee-------eeecc--Cc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEE
Confidence 763 3344566655 34332 22 233333 3588999999999998888 8999999999999853 33
Q ss_pred EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013884 232 LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 232 ~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~ 305 (434)
..+ ...++++++||-.|++|..|. .+.++.+||.-.++.+..+.+| .++++..+|||--++|++-
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW------ 335 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW------ 335 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch------
Confidence 333 357889999999999999876 4579999999999999999888 6777999999999999999
Q ss_pred CCcEEEEe
Q 013884 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
|..+|||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.9e-27 Score=202.60 Aligned_cols=269 Identities=13% Similarity=0.200 Sum_probs=205.3
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCce--eeee
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGI--LYRL 88 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~--~~~~ 88 (434)
.-+|+|.+ .|.+|++|.+.+|.|.+++++.. ..|..+..+||+++||.+..-.|++||+.+..... .+..
T Consensus 10 ~viLvsA~-----YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 10 PVILVSAG-----YDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred ceEEEecc-----CcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence 35888888 89999999999999999988754 66779999999999999999999999998765423 3445
Q ss_pred ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCCeEEEEEEeccccc
Q 013884 89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKT 167 (434)
Q Consensus 89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~ 167 (434)
+..+|..+.|.-++ ..+. +++.+++++||++.. +.+++.+ +.+.+.++..+|.-..|++ .|.+
T Consensus 82 h~kNVtaVgF~~dg-rWMy-----TgseDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis-----~dqs 145 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDG-RWMY-----TGSEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELIS-----GDQS 145 (311)
T ss_pred cCCceEEEEEeecC-eEEE-----ecCCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEe-----ecCC
Confidence 56689998888773 3332 468899999999965 3344433 4578889999999888766 3444
Q ss_pred CceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------eeEEEc--CCcC
Q 013884 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGP 238 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~~~~~--~~~~ 238 (434)
+.. .+|.+..+.- .+...-+...+|.++...|||+.++. ...-|..++|++-+ .++..+ |.+.
T Consensus 146 g~i-----rvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 146 GNI-----RVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CcE-----EEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEE--ecCCccEEEEEccCCCccccceEhhheecccce
Confidence 432 2344422221 22222223578999999999999984 55568999999743 233333 7889
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH- 314 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~- 314 (434)
+..+.+|||+++|++++.+ .+++||++++. +.-..+++| .+..++||.||+||+||+. |+.+++|++
T Consensus 218 il~C~lSPd~k~lat~ssd---ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~ 288 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSD---KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLS 288 (311)
T ss_pred EEEEEECCCCcEEEeecCC---ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccc
Confidence 9999999999999999955 49999999988 666667777 7888999999999999999 999999999
Q ss_pred cCceee
Q 013884 315 NGSLFF 320 (434)
Q Consensus 315 ~g~~~~ 320 (434)
.|+.+.
T Consensus 289 ~~k~v~ 294 (311)
T KOG0315|consen 289 AGKEVR 294 (311)
T ss_pred cCceee
Confidence 455443
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-29 Score=227.62 Aligned_cols=263 Identities=18% Similarity=0.184 Sum_probs=215.5
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCC
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
..+..+.||.|++.||+++ +|.++||+.++.......+.|...|..+.|+|.. +..++ +...++++++|++.+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~la-----t~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLA-----TASADGTVKLWKLSQ 250 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcccee-----eeccCCceeeeccCC
Confidence 5566789999999999995 7899999999987777888899999999999983 55555 356778999999988
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg 207 (434)
..++..++.|...+..++|+|+|++|.. +..|.+.+.| .+.. ..+....-.|..+|++++|.|||
T Consensus 251 ---e~~l~~l~gH~~RVs~VafHPsG~~L~T---asfD~tWRlW-------D~~t--k~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 251 ---ETPLQDLEGHLARVSRVAFHPSGKFLGT---ASFDSTWRLW-------DLET--KSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ---CcchhhhhcchhhheeeeecCCCceeee---cccccchhhc-------cccc--chhhHhhcccccccceeEecCCC
Confidence 7899999999999999999999999644 3477777744 3322 22333334457899999999999
Q ss_pred CEEEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C-c
Q 013884 208 SEFAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C-S 282 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~-~ 282 (434)
..++ +|.+|..-+|||++ +..+.. -|..+|.++.|||+|-.||+|+.|| +++|||++..+.+.++.+| + +
T Consensus 316 SL~~--tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 316 SLAA--TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSELYTIPAHSNLV 390 (459)
T ss_pred ceee--ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccccceecccccchh
Confidence 8888 89999999999996 444443 3889999999999999999999555 9999999998889999888 3 4
Q ss_pred eEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCceeee---eecccceeeEEEcCCCCCCCCc
Q 013884 283 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 283 ~~~~wsp-dg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~---~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+.+.|+| .|.+|+|++. ||+++||.-.+-.+.+ .+-+++..+...|++..+.+..
T Consensus 391 S~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred hheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 4499999 7899999999 9999999986543333 3667899999999988777653
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=4.5e-27 Score=217.56 Aligned_cols=272 Identities=14% Similarity=0.265 Sum_probs=213.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++|+|+-+|++|||+. +|+.++||+ .+|..+.+|.+++ ..+.++.|+.+|.|++++ .|+++.+||....
T Consensus 238 VT~L~Wn~~G~~LatG~-----~~G~~riw~-~~G~l~~tl~~Hk---gPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGS-----EDGEARIWN-KDGNLISTLGQHK---GPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cceEEecCCCCeEEEee-----cCcEEEEEe-cCchhhhhhhccC---CceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 78999999999999999 899999999 6677788886654 788899999999999998 6899999999776
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
.......++...--++.|-.+ ..++ ..+.++.+.++.+.. ..|+.+...|...+..++|+|.|..|+.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~--~~F~-----ts~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~LLaS-- 376 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSN--DEFA-----TSSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGSLLAS-- 376 (524)
T ss_pred eEEEeeeeccCCccceEEecC--ceEe-----ecCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCceEEE--
Confidence 544445555444345666544 2222 134567899999988 8999999999999999999999997544
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCE-------EEEEEccCCCeEEEEecc-ceeE
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSE-------FAVVYGFMPASATIFNKK-CRPI 231 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~-------~av~~g~~~~~i~l~d~~-~~~~ 231 (434)
+..|.+.+.|.+.+. + +.-.+ .+...|+.+.|||+|.- +.+++...+..|++||+. +.++
T Consensus 377 -~SdD~TlkiWs~~~~-------~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 377 -CSDDGTLKIWSMGQS-------N---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred -ecCCCeeEeeecCCC-------c---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 335566654432211 1 11111 13668999999997642 333356678999999994 7888
Q ss_pred EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCc
Q 013884 232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 232 ~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~ 308 (434)
+.| |..+|.+++|||+|+++|+|+ .+|-|.+|++++++.++...+.+. ..+.|+-+|.+|..+.. |+.
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs---~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s------d~~ 516 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGS---LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS------DGS 516 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecC---CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec------CCC
Confidence 888 889999999999999999998 557999999999999999988755 55999999999999888 999
Q ss_pred EEEEee
Q 013884 309 IKIFHH 314 (434)
Q Consensus 309 i~iw~~ 314 (434)
+++-|+
T Consensus 517 vcvldl 522 (524)
T KOG0273|consen 517 VCVLDL 522 (524)
T ss_pred ceEEEe
Confidence 998875
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3.6e-26 Score=214.17 Aligned_cols=310 Identities=14% Similarity=0.159 Sum_probs=203.6
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
+|.|+.|||||++++|.+ .|+.+.|||=.+|+.+..+.....|+..+-++.||||++.+++++ |.+++|||+..
T Consensus 192 FV~~VRysPDG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred ceeeEEECCCCCeEEEec-----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 589999999999999999 899999999999999999985555778888999999999999985 56999999855
Q ss_pred CCCcee-------------------------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884 80 FPKGIL-------------------------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 80 ~~~~~~-------------------------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
...... ...|...|+.+..+|++ .+|. ++..
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~-----Sgsy 340 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY-----SGSY 340 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE-----eecc
Confidence 322111 11133356666666664 2221 2456
Q ss_pred CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee--------------ecce-------
Q 013884 117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------YGES------- 175 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------~g~~------- 175 (434)
++.|.-|+....... . ..-..|...+..|.-+..|..+.+. .|.+.+.. .|.+
T Consensus 341 DG~I~~W~~~~g~~~-~-~~g~~h~nqI~~~~~~~~~~~~t~g----~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSD-R-LAGKGHTNQIKGMAASESGELFTIG----WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred CceEEEEecCCcccc-c-cccccccceEEEEeecCCCcEEEEe----cCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 678888887652110 0 0011222233333322222221111 01110000 0000
Q ss_pred ------------eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-----EEcCCcC
Q 013884 176 ------------KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-----LELGSGP 238 (434)
Q Consensus 176 ------------~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-----~~~~~~~ 238 (434)
.|.++.-. .....++......+++.+|+++++|| |..|+++.+|.+.+..+ ..-|.++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~s~vAv~~~~~~vaV--GG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQ---TKVSSIPIGYESSAVAVSPDGSEVAV--GGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred CCCCEEEEEecCcEEEEecC---CcceeeccccccceEEEcCCCCEEEE--ecccceEEEEEecCCcccceeeeecccCC
Confidence 11111111 11111122345568999999999996 88899999998875432 2237899
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE---EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG---TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~---~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+++++|||||.|||++. ..+.+-+||+.+++... .+....+.+++|||+..++|||+. |..|.||++.
T Consensus 490 iT~vaySpd~~yla~~D---a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl------Dt~Viiysv~ 560 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGD---ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL------DTNVIIYSVK 560 (603)
T ss_pred ceEEEECCCCcEEEEec---cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc------cceEEEEEcc
Confidence 99999999999999987 66799999999886532 223347778999999999999999 9999999995
Q ss_pred Cce----eeeeecccceeeEEEcCCCCCCCC
Q 013884 316 GSL----FFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 316 g~~----~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.-. +...+...+..+.|--. ..+.+.
T Consensus 561 kP~~~i~iknAH~~gVn~v~wlde-~tvvSs 590 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSVAWLDE-STVVSS 590 (603)
T ss_pred ChhhheEeccccccCceeEEEecC-ceEEec
Confidence 432 22235556999999755 344443
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.2e-25 Score=212.75 Aligned_cols=308 Identities=14% Similarity=0.187 Sum_probs=208.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+++.||+|++|+... +.+...+-++.....++.|..+ ..+-+++|||||+++|.+..+-++||..+...
T Consensus 58 I~~ialSp~g~lllavd-----E~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 58 ITRIALSPDGTLLLAVD-----ERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred eEEEEeCCCceEEEEEc-----CCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 67899999999999988 7788888898888888888776 66779999999999999999999999987543
Q ss_pred C--------ceeeeeecCCeeEEEEeCCCCC--------------------------------eEEEEec-CC-----CC
Q 013884 82 K--------GILYRLRVPGVAAFEVSKAPGS--------------------------------HVAVFVP-ES-----KG 115 (434)
Q Consensus 82 ~--------~~~~~~~~~~v~~~~~sp~~~~--------------------------------~ia~~~~-~~-----~~ 115 (434)
. ......+.+.|.++.||.|... .+++|.. ++ -+
T Consensus 129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs 208 (893)
T KOG0291|consen 129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS 208 (893)
T ss_pred hcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe
Confidence 2 1123345678999999987321 1111111 00 13
Q ss_pred CCceEEEEEcCCCC-----------------------C------------------------------------------
Q 013884 116 SPASVQIYACGKDL-----------------------Q------------------------------------------ 130 (434)
Q Consensus 116 ~~~~v~i~~~~~~~-----------------------~------------------------------------------ 130 (434)
.+|.+.+|.+...- +
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~ 288 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE 288 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence 44566677665100 0
Q ss_pred --------CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc--eeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884 131 --------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--SYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 131 --------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~--~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
...+.+++.....+..+.||..|++|++.++ +.++ .|.-....|.+... .|...+.+
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQ---------gH~~~i~~ 355 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQ---------GHSDRITS 355 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeecc---------ccccceee
Confidence 1111111122233445667777887766432 2222 11111122222221 23568999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013884 201 VQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------- 270 (434)
Q Consensus 201 ~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~------- 270 (434)
+++||||..+| +|..|++|++||.. +-++.+| |+..++.+.|+-.|+.|++++ +||+|+.||+..
T Consensus 356 l~YSpDgq~ia--TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 356 LAYSPDGQLIA--TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred EEECCCCcEEE--eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccceeeee
Confidence 99999999998 89999999999985 3444444 777777777777777777776 666777777654
Q ss_pred -------------------------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 271 -------------------------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 271 -------------------------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|+++-.+.+| .+..++|+|+|..|++++- |++|||
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW------DkTVRi 504 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW------DKTVRI 504 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc------cceEEE
Confidence 3344444455 3445899999999999999 999999
Q ss_pred EeecCc--eeeee-ecccceeeEEEcCCCCCCCC
Q 013884 312 FHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~g~--~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
|++-+. .+... ...++..+.++|++..+..+
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 999554 33333 34689999999999887765
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=8.8e-25 Score=202.69 Aligned_cols=272 Identities=16% Similarity=0.223 Sum_probs=204.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|+|+|++|++.+ .|+.|.+|++.+++.+..+..+. ..+..+.|++++++++++. ++.|++|+....
T Consensus 12 i~~~~~~~~~~~l~~~~-----~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 12 VTCVAFSPDGKLLATGS-----GDGTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred EEEEEEcCCCCEEEEee-----cCcEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 78999999999999988 78999999999888777665543 4455899999998888875 789999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...+..+.|+|+ +..++. .+.++.+.+|++.. .+.+.....+...+..+.|+|++..++...
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPD-GRILSS-----SSRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cceEEEeccCCcEEEEEEcCC-CCEEEE-----ecCCCeEEEEECCC---cEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 443334444557999999998 444443 12467899999986 566666666777789999999977655431
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCc
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~ 237 (434)
.|.. ++.++............+...+.+++|+|+++.+++ +..++.+.+||++ ...+..+ +..
T Consensus 155 ---~~~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 155 ---QDGT---------IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred ---CCCc---------EEEEEccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCC
Confidence 1222 333333322111111134568999999999988885 4448899999997 3444444 566
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
.+.++.|+|++.++++++ .+|.|.+||+.+++.+..+..+ .+..++|+|++.+|++++. |+.++||+
T Consensus 221 ~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC------CCeEEecC
Confidence 899999999988888776 4579999999988887777765 4667999999999999999 99999996
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-25 Score=207.98 Aligned_cols=299 Identities=13% Similarity=0.260 Sum_probs=220.1
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCC--CcE-----EEEEe----ecCcCCCCCCeeeecCCCcEEEEe-c
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTET--GEA-----VYQLF----QKNMTKTTWPSIRFSSDEAVACRM-A 68 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~--g~~-----~~~~~----~~~~~~~~~~~~~~S~d~~~la~~-~ 68 (434)
|.+.+|.|--. .|++.+ .|...++|++.. ..+ ++... +.......+++++|+.||.+||++ .
T Consensus 181 V~~~~WnP~~~~llasg~-----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGS-----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred eEEEecCchhhhhhhccC-----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 45667777655 565555 788999999864 111 11110 111122578899999999999999 4
Q ss_pred CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884 69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
+++++||+..... ......|...|.++.|+-.+ .+|+ +.+.++++.||+.-. +....+.+++......+.
T Consensus 256 ~G~~riw~~~G~l-~~tl~~HkgPI~slKWnk~G-~yil-----S~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 256 DGEARIWNKDGNL-ISTLGQHKGPIFSLKWNKKG-TYIL-----SGGVDGTTILWDAHT---GTVKQQFEFHSAPALDVD 325 (524)
T ss_pred CcEEEEEecCchh-hhhhhccCCceEEEEEcCCC-CEEE-----eccCCccEEEEeccC---ceEEEeeeeccCCccceE
Confidence 7899999987633 23455566789999999884 4444 368889999999977 777788888888878899
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK- 227 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~- 227 (434)
|-.+..+... +.|.. |+.+.+........-..|.++|..+.|.|.|..|+ +++.|++++||+..
T Consensus 326 W~~~~~F~ts----~td~~---------i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLa--S~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 326 WQSNDEFATS----STDGC---------IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLA--SCSDDGTLKIWSMGQ 390 (524)
T ss_pred EecCceEeec----CCCce---------EEEEEecCCCcceeeecccCceEEEEECCCCceEE--EecCCCeeEeeecCC
Confidence 9887775322 22222 33333333322222334789999999999999999 67788999999964
Q ss_pred ceeEEEc--CCcCeeEEEECCCCC---------eEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884 228 CRPILEL--GSGPYNTVRWNPKGK---------FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 228 ~~~~~~~--~~~~~~~i~~sP~g~---------~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
....+.+ |...+.++.|||+|. .|+++++++ +|.+||+..+.++..+..| .+..++|||+|+|+
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 5556666 678899999999754 688888665 9999999999999999665 56669999999999
Q ss_pred EEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCCCCC
Q 013884 295 MTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVSPDK 339 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~~~~ 339 (434)
|+|+. |+.|.||+.....+++... .-++.++|+-.+..+
T Consensus 468 AsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 468 ASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKL 508 (524)
T ss_pred EecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEE
Confidence 99999 9999999996555554433 358999999987443
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=209.02 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=191.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|+.+.||++|+||||++ .|.+..||++..-.. .+++.++. ..|..+.||||++||++++ +..+.+||+
T Consensus 227 VWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASAS-----KDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred EEEEEEcCCCeeEeecc-----CCceEEEEEEecCcceeeeeeeeccc---CceEEEEECCCCCeEEecCchHheeeccC
Confidence 78999999999999999 899999999865433 55666644 6777999999999998875 568999999
Q ss_pred CCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCe
Q 013884 78 TDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~ 155 (434)
..+.......- +.-.+.+.+|.||+-.+++ ++.+..+..|++.. ..+..-...+ ..+..++.++||++
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~------Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT------GSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEe------cCCCCcEEEecCCc----chhhcccccccceeEEEEEcCCCcE
Confidence 88664322222 2335788999999544443 45667899999865 2222222211 23678999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~ 234 (434)
++.++ .|+.+..|. .+. . ..+-.+..+.+|++++.|.||+.+.+ .-.+..+.+||++-.. +..+
T Consensus 369 vl~v~---~d~~i~l~~-------~e~--~-~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLYN-------REA--R-VDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEEEe---cccceeeec-------hhh--h-hhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHh
Confidence 88765 555554332 211 1 11112233679999999999988775 5678899999997332 2222
Q ss_pred --CCcC--eeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeC
Q 013884 235 --GSGP--YNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQID 306 (434)
Q Consensus 235 --~~~~--~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D 306 (434)
|+.. +-.-+|-- +..++++|+ .|++|+||+..+++.+..+.+| .+.+++|+|.. ++||+|+. |
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD------D 504 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGS---EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD------D 504 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecC---CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC------C
Confidence 2221 12223433 346888877 6789999999999999999998 56669999975 46778888 9
Q ss_pred CcEEEEeec
Q 013884 307 NGIKIFHHN 315 (434)
Q Consensus 307 ~~i~iw~~~ 315 (434)
|+||||...
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999754
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-24 Score=189.47 Aligned_cols=274 Identities=17% Similarity=0.235 Sum_probs=203.1
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEc-----CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKT-----ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~-----~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|.+++-.+.+ ..|++.+ .|+.+.+|++ ..|..++.|.+|+ -.+..+..|+||+++++++ |+++++
T Consensus 18 Vt~la~~~~~~~~l~sas-----rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSAS-----RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred EEEEEeecCCCceEEEcc-----cceEEEEEEeccCccccCceeeeeeccc---eEecceEEccCCceEEeccccceEEE
Confidence 5677777764 4555666 7899999987 4567788888865 3455788999999999985 789999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~ 152 (434)
||+...........|...|.++++||+ +..|. ++..+.++.+|++-. ....++.-. +.=+.++.|+|.
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~d-n~qiv-----SGSrDkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTD-NRQIV-----SGSRDKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCC-Cceee-----cCCCcceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCC
Confidence 999987655566677888999999999 44444 456778999999854 333333222 455789999998
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeE
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~ 231 (434)
....+ +.+...|++.+.|. ++ +..-...-+.+.+.++.+++||||...+ +|..++++.+||++ ++.+
T Consensus 160 ~~~p~-Ivs~s~DktvKvWn-------l~--~~~l~~~~~gh~~~v~t~~vSpDGslca--sGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 160 ESNPI-IVSASWDKTVKVWN-------LR--NCQLRTTFIGHSGYVNTVTVSPDGSLCA--SGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred CCCcE-EEEccCCceEEEEc-------cC--CcchhhccccccccEEEEEECCCCCEEe--cCCCCceEEEEEccCCcee
Confidence 64332 34455777777543 32 1111112234688999999999999888 79999999999995 5667
Q ss_pred EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----------CCceEEEECCCCCEEEEEEc
Q 013884 232 LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----------ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 232 ~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----------~~~~~~~wspdg~~l~tas~ 299 (434)
..+ +...|++++|+|+--+|+.+. +. .|+|||+++++++..+.- ...+.++||+||..|+.+-+
T Consensus 228 ysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 228 YSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred EeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 777 578899999999877777654 33 599999998876654421 12244999999999999999
Q ss_pred CCceeeCCcEEEEeec
Q 013884 300 APRLQIDNGIKIFHHN 315 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~~ 315 (434)
||.|++|.+.
T Consensus 304 ------d~~irv~qv~ 313 (315)
T KOG0279|consen 304 ------DNVIRVWQVA 313 (315)
T ss_pred ------CCcEEEEEee
Confidence 9999999874
No 18
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.1e-24 Score=207.81 Aligned_cols=279 Identities=13% Similarity=0.172 Sum_probs=223.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++||.|...|++.. .+.++||+..+++|++++... -+.+..|-|.+++++.+. +|++.+||+.+.
T Consensus 376 VRsl~vS~d~~~~~Sga------~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGA------GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeEEEeecCceeeeecC------CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 78899999999988865 578999999999999998764 334788999999999995 579999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeee-------ecccceeEEEECC
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRS-------FFRCSTVQLNWNR 151 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~-------~~~~~~~~~~ws~ 151 (434)
......+.|...|.+++.+|++...+. ++.+.+|++|+..... ++..-..++ -...++.++..||
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT------~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVT------GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEE------ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 666666777888999999999655553 4778899999964311 111111011 1346788999999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cee
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP 230 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~ 230 (434)
||++|++.. .|.+.+.||-.+--+++...|. .-||.++..|||++.++ +|+-|..|++|-++ +.+
T Consensus 519 dgk~LaVsL---LdnTVkVyflDtlKFflsLYGH---------kLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 519 DGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGH---------KLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDC 584 (888)
T ss_pred CCcEEEEEe---ccCeEEEEEecceeeeeeeccc---------ccceeEEeccCCcCeEE--eccCCCceEEeccccchh
Confidence 999987754 6778877765544455555553 67999999999999888 78889999999886 333
Q ss_pred EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884 231 ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 231 ~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
-.++ |...+.++.|-|+..++.++| .+|.|+-||-++.+.+.++.+| .+.+++-+|+|.|+++++. |
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D 655 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------D 655 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEec---CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------C
Confidence 3444 789999999999999999999 6679999999999999999887 6778999999999999999 9
Q ss_pred CcEEEEeecCceee
Q 013884 307 NGIKIFHHNGSLFF 320 (434)
Q Consensus 307 ~~i~iw~~~g~~~~ 320 (434)
.+|++|..+.+.+.
T Consensus 656 ~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 656 KSIRLWERTDEILI 669 (888)
T ss_pred ceeEeeeccCccee
Confidence 99999999876543
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.7e-23 Score=202.26 Aligned_cols=286 Identities=15% Similarity=0.182 Sum_probs=225.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~ 79 (434)
|+|.+|+|.-+.||+.- ..+...++++..-.+++.+.-.. ..+..+.|+.-|.++|.+.. +++-||+...
T Consensus 268 vtaa~fH~~t~~lvvgF-----ssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGF-----SSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred eeeeeccCCceEEEEEe-----cCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 67899999888888876 56888899999999999876543 56668999999999999976 5999999877
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
..-......|...+.++++||| +..|+ +++.++.|+||+... +-++.+.+-|...++.+.|+..|+.++..
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpD-gq~ia-----TG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPD-GQLIA-----TGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred cceeeeccccccceeeEEECCC-CcEEE-----eccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 5433344567889999999999 66776 467889999999987 78888888999999999999999986543
Q ss_pred EEecccccCceee--------------------------------c---ceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884 160 AQSDVDKTNQSYY--------------------------------G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 160 ~~~~~d~~~~~~~--------------------------------g---~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws 204 (434)
. .|.+.+.|+ | ...|+.+++..++...+--.|+|||..++|+
T Consensus 411 S---LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 411 S---LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred e---cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 2 455444331 1 1234455555554444455689999999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecc--ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--
Q 013884 205 YSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-- 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~--~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-- 279 (434)
|+|..++ +++.|.+|++||+= ...+-++ ....+..+.|+|+|+-||++. ++|+|.|||.+.+..+..+++
T Consensus 488 ~~~~~La--S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 488 PDGSLLA--SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred cccCeEE--eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchh
Confidence 9999888 79999999999983 2344444 467789999999999999999 888999999987655533321
Q ss_pred --------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 280 --------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 280 --------------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
...+.+++|+||.+|++|+. .+.|+|||+..+.
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~------sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE------SNSICIYDVPEGV 615 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC------cccEEEEECchhh
Confidence 13456999999999999999 9999999995553
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.5e-24 Score=212.60 Aligned_cols=244 Identities=12% Similarity=0.172 Sum_probs=190.4
Q ss_pred EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-----------C--------------------cee
Q 013884 38 AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-----------K--------------------GIL 85 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-----------~--------------------~~~ 85 (434)
+.+++.... ..+.|..||+|+++||.+. +..|++|.+.... . ...
T Consensus 370 c~YT~~nt~---~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 370 CMYTFHNTY---QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEEEcC---CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 345554432 5677999999999999994 5699999976210 0 011
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
...|...|.+..|+|+...++. ...+.+||+|.+.+ ...+.....|...+..+.|+|-|-+.+. ...|
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlS------cSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFat---as~D 514 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLS------CSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFAT---ASHD 514 (707)
T ss_pred eecCCCceeeeeecccccceee------ccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEe---cCCC
Confidence 2234556888999998544443 46678999999998 6777777899999999999999988543 4577
Q ss_pred ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEE
Q 013884 166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTV 242 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i 242 (434)
++-+.|.+.. ....++-..+-..|.++.|+|++.+++ +|+.|.++++||.. +..++-| |+++|.++
T Consensus 515 ~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs~Y~a--TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 515 QTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNSNYVA--TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred ceeeeeeccc---------CCchhhhcccccccceEEECCcccccc--cCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 7776554322 223444455678899999999999999 89999999999984 5555555 89999999
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+|||+|++|++|+ .+|.|.+||+.+++.+..+.+| .+..+.||.||..|++++. |++|++||+.-
T Consensus 584 ~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGD---EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecc---cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchh
Confidence 9999999999998 6789999999999998888777 3445999999999999999 99999999843
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=5.5e-23 Score=219.23 Aligned_cols=272 Identities=12% Similarity=0.145 Sum_probs=192.5
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----c----EEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----E----AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATN 70 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~----~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~ 70 (434)
.|.+++|||+|++|+|++ .|+.|+|||+.+. . .+..+... ..+.++.|++ ++.+|+++ .++
T Consensus 485 ~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASR----SKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEeccc----CceeeEEeccCCCCEEEEEeCCC
Confidence 378999999999999999 8999999997542 1 12222221 4455899987 46788877 578
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|++||+...........|...|.+++|+|..+..++. ++.++.|++|++.. ...+..... ...++++.|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S-----gs~Dg~v~iWd~~~---~~~~~~~~~-~~~v~~v~~~ 626 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS-----GSDDGSVKLWSINQ---GVSIGTIKT-KANICCVQFP 626 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE-----EcCCCEEEEEECCC---CcEEEEEec-CCCeEEEEEe
Confidence 99999998754333344566789999999854555553 46678999999987 566655543 3567888995
Q ss_pred -CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 151 -RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 151 -~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
++|..+++.. .|.. ++.+++....... ....+...|..+.|. ++..|+ +++.|+.|++||++.
T Consensus 627 ~~~g~~latgs---~dg~---------I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s~D~~ikiWd~~~ 691 (793)
T PLN00181 627 SESGRSLAFGS---ADHK---------VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCCCEEEEEe---CCCe---------EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEECCCEEEEEeCCC
Confidence 4677655431 3333 3333332221111 122457899999997 677766 577899999999862
Q ss_pred -------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-------------eCC--CceE
Q 013884 229 -------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-------------RAE--CSVT 284 (434)
Q Consensus 229 -------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-------------~~~--~~~~ 284 (434)
..+..+ |...++++.|+|+|.+|++|+ .+|.|.+|+......+..+ ..+ .+..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs---~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS---ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe---CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 345555 567789999999999999999 5579999998755333211 111 3566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
++|+|+|..|++|+. |+.|+||++
T Consensus 769 v~ws~~~~~lva~~~------dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANS------TGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecC------CCcEEEEec
Confidence 999999999999999 999999986
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-23 Score=182.43 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=197.7
Q ss_pred CCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013884 49 KTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 49 ~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~ 121 (434)
...+..++-.+.+ ..++.+ .|..+.+|++...+.. ...+.|...|..+.+++++...+. .+.++.++
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS------~swD~~lr 88 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS------ASWDGTLR 88 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe------ccccceEE
Confidence 3666677777764 455555 4569999998754321 123345557899999999654443 57788999
Q ss_pred EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC---CCCe
Q 013884 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPV 198 (434)
Q Consensus 122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i 198 (434)
+||+.. ++...+...|..++.++++++|.+.| ++...|++.+.|.. .+ .+..++.. .+-|
T Consensus 89 lWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qi---vSGSrDkTiklwnt---------~g--~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 89 LWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQI---VSGSRDKTIKLWNT---------LG--VCKYTIHEDSHREWV 151 (315)
T ss_pred EEEecC---CcEEEEEEecCCceEEEEecCCCcee---ecCCCcceeeeeee---------cc--cEEEEEecCCCcCcE
Confidence 999988 78888999999999999999999985 34557888775532 22 22222221 4679
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
.++.|+|+.....+++++.|+.+++||+++.++.. + |.+.+|++.+||||.++++|| .+|.+.+||++.++.+.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccCCceeE
Confidence 99999999877777799999999999998655443 3 688999999999999999988 67899999999999999
Q ss_pred EeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec-----------ccceeeEEEcCCCCCCCC
Q 013884 276 TTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-----------DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 276 ~~~~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~-----------~~~~~~~w~p~~~~~~~~ 342 (434)
.+.+..++. ++|+|.--.|+.+ + +.+|+|||...+ ++..... .....++|.+++..||..
T Consensus 229 sl~a~~~v~sl~fspnrywL~~a-t------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 229 SLEAFDIVNSLCFSPNRYWLCAA-T------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eccCCCeEeeEEecCCceeEeec-c------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 999886665 9999995555554 4 788999999654 4443322 245678999999999986
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=8.3e-24 Score=210.76 Aligned_cols=277 Identities=14% Similarity=0.157 Sum_probs=211.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|.++.|||+|++|++.+ .|+.+++|++.+++ .++.+.+ |...+..++||||+++++++. |.+|+|||+.
T Consensus 162 v~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 67899999999999988 89999999998777 5555533 447888999999999999995 5699999994
Q ss_pred CC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 79 DF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.. ......+.|...|.+++|+|.+ ..++ +++.++.|+||++.+ +..+..+..|...+..+.++++|..|+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~-----Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLLV-----SGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-CEEE-----EecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEE
Confidence 43 3345556777889999999996 6665 357788999999998 889999999999999999999999875
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCce-eeeec--CCCC-CeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEE
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL--RKEG-PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL 232 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l--~~~~-~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~ 232 (434)
.. +.|...+.|. +..... +...+ .... +++.++|+|+++++++ +..++.+.+||++ ...+.
T Consensus 305 s~---s~d~~i~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 305 SA---SYDGTIRVWD---------LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred Ec---CCCccEEEEE---------CCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCccee
Confidence 53 2455554443 222211 11111 1122 7999999999999994 6778899999997 33333
Q ss_pred Ec--CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc-eEEEECCCCCEEEEEEcCCcee
Q 013884 233 EL--GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS-VTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 233 ~~--~~~---~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~-~~~~wspdg~~l~tas~~~rl~ 304 (434)
.+ +.. .+.....++.|+++++++ .++.|++||..++..+..+.+| .. ..+.|+|...++++++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~---~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~---- 443 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGS---EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE---- 443 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEe---CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC----
Confidence 33 322 233445688999999998 6679999999999888888777 22 349999999999999831
Q ss_pred eCCcEEEEeecC
Q 013884 305 IDNGIKIFHHNG 316 (434)
Q Consensus 305 ~D~~i~iw~~~g 316 (434)
.|+.+++|.+..
T Consensus 444 ~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 444 GDGLIRLWKYDF 455 (456)
T ss_pred CCceEEEecCCC
Confidence 189999998764
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=6.1e-23 Score=184.91 Aligned_cols=282 Identities=16% Similarity=0.148 Sum_probs=209.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+++.+|+.++++|++ .|..-.||++.+|+.+..+.+++ ..|.++.||.||.|||++ .++.|+||+....
T Consensus 67 vFavsl~P~~~l~aTGG-----gDD~AflW~~~~ge~~~eltgHK---DSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGG-----GDDLAFLWDISTGEFAGELTGHK---DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred eEEEEeCCCCceEEecC-----CCceEEEEEccCCcceeEecCCC---CceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 67899999999999988 89999999999999888887754 888899999999999999 5789999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
............+.=+.|+|- ..+++. +..++.+..|++++ .........+..+..+=.+.|+|+.++...
T Consensus 139 ~~~~~~~~e~~dieWl~WHp~-a~illA-----G~~DGsvWmw~ip~---~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHPR-AHILLA-----GSTDGSVWMWQIPS---QALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ceEEEeecccCceEEEEeccc-ccEEEe-----ecCCCcEEEEECCC---cceeeEecCCCCCcccccccCCCceEEEEe
Confidence 432222225567888899996 555442 56778999999998 666677777888888888999999876653
Q ss_pred EecccccCceeecce--eEEEEee-------------------CCCcee-----------eee----------cCCCCCe
Q 013884 161 QSDVDKTNQSYYGES--KLNYLTT-------------------DGTHEG-----------LVP----------LRKEGPV 198 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~~-------------------~~~~~~-----------~v~----------l~~~~~i 198 (434)
.|.+.+.|.-.+ .++.+.. .+..++ .+. ...+..+
T Consensus 210 ---~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 210 ---DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred ---cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 355555553211 2222220 000000 000 0112223
Q ss_pred EEEEECc---CCCEEEEEEccCCCeEEEEeccceeEE-Ec-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884 199 HDVQWSY---SGSEFAVVYGFMPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 199 ~~~~wsp---dg~~~av~~g~~~~~i~l~d~~~~~~~-~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.++.+.| .=..+| .|++|++|.|||+....++ .+ |..+|..+.|-+ ..+|+++. .+|+|+.||.++|.+
T Consensus 287 esve~~~~ss~lpL~A--~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAA--CGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQL 360 (399)
T ss_pred hhhhhcccccccchhh--cccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccce
Confidence 3344444 333444 5999999999999654443 33 778899999999 77888887 778999999999999
Q ss_pred EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 274 i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+..+.+| .+..++.+|++++++|++. ||+.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~------D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSD------DNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecC------CCeEEEEecC
Confidence 9999998 5667999999999999999 9999999863
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=2e-22 Score=176.79 Aligned_cols=265 Identities=14% Similarity=0.120 Sum_probs=205.1
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.++.|++|+++|++++ |+.+.|||.-...+.....+...-|...++||. +.++|+ +|.++.+.||++.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAc-----GGLdN~Csiy~ls 127 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVAC-----GGLDNKCSIYPLS 127 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-CCeEEe-----cCcCceeEEEecc
Confidence 447788999999999999985 679999998887776777777788999999999 677775 6888999999998
Q ss_pred CCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884 127 KDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 127 ~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w 203 (434)
.... ....+.+..|..-..+..|-+|+..| +++ .| .+.-++++..+.....-..|.+.|.++++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il---T~S-GD---------~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL---TGS-GD---------MTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceE---ecC-CC---------ceEEEEEcccceEEEEecCCcccEEEEec
Confidence 5311 12334556677777778888766532 211 23 33444444444333444457899999999
Q ss_pred Cc-CCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 204 SY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 204 sp-dg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+| +++.|+ +|.-|+..+|||++ +..+..| |...||++.|.|+|.-+++|+ .+++.++||++....+..+.+
T Consensus 195 ~p~~~ntFv--Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 195 SPSDGNTFV--SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCCeEE--ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEeecCCcEEeeecc
Confidence 99 999998 78889999999997 3334444 889999999999999999988 668999999999888888876
Q ss_pred C----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee--eeecccceeeEEEcCCCCCCCC
Q 013884 280 E----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF--KKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~--~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
. .++.++||-.||+|+.+.. |.++.+||. .|+.+- ..+..++.++.-.|++.-+-+.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 5 5667999999999999988 999999997 444332 3466789999999998766554
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=175.87 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=206.3
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|+.++|+|- |..|+|++ .|+.|+||++..+.- .........|+..+++++|||.|++||++ .|.++.||.-.
T Consensus 17 ~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred EEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 678999998 99999999 899999999875432 11111223467889999999999999998 57799999976
Q ss_pred CC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 79 DF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 79 ~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
+. +.......|...|++++||++ +.++|.... +..|-||.+....+-..++.++.|..++-.+.|+|.-..|
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSR-----DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSAS-GNYLATCSR-----DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCC-CCEEEEeeC-----CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 43 333444556667999999999 678876544 4589999998655567788899999999999999976643
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~ 235 (434)
++...|.+.+.|.- ...+..++..+|+ ++..|.+++|+|+|.+++ +++.|+.+.||-..+. +..+|
T Consensus 166 ---~S~SYDnTIk~~~~-------~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s~sdD~tv~Iw~~~~~-~~~~~ 232 (312)
T KOG0645|consen 166 ---FSCSYDNTIKVYRD-------EDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--SCSDDGTVSIWRLYTD-LSGMH 232 (312)
T ss_pred ---EEeccCCeEEEEee-------cCCCCeeEEEEecCccceEEEEEecCCCceEE--EecCCcceEeeeeccC-cchhc
Confidence 34446777775532 2234445555665 366999999999999998 6788999999975522 22346
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE-EeeCC--CceEEEECCC-CCEEEEEEcCCceee
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG-TTRAE--CSVTSEWSPD-GRYFMTATTAPRLQI 305 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~-~~~~~--~~~~~~wspd-g~~l~tas~~~rl~~ 305 (434)
..++..+.|. ...||+++ .++.|.+|-.... +.+. ...+| .+..++|.|. ...|++++.
T Consensus 233 sr~~Y~v~W~--~~~IaS~g---gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D------ 301 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGG---GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD------ 301 (312)
T ss_pred ccceEeeeec--ccceEecc---CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC------
Confidence 7888889998 45778887 4468999965532 2222 22233 6677999995 667888888
Q ss_pred CCcEEEEeec
Q 013884 306 DNGIKIFHHN 315 (434)
Q Consensus 306 D~~i~iw~~~ 315 (434)
||.+++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999864
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1.6e-22 Score=189.86 Aligned_cols=277 Identities=14% Similarity=0.234 Sum_probs=186.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-----------------------------------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN----------------------------------- 46 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~----------------------------------- 46 (434)
|.+|+||||++.++|++ .|++++|||+.+.++++++....
T Consensus 238 IfalsWsPDs~~~~T~S-----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVS-----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred EEEEEECCCCceEEEec-----CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 68999999999999999 89999999999988777665221
Q ss_pred -----cCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013884 47 -----MTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS 119 (434)
Q Consensus 47 -----~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~ 119 (434)
.|...++++.-++|+++|.++ .|+.|.-|+......... -+.|...|..++.+-. +.++.+ +.+.+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~------g~Dd~ 385 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFTI------GWDDT 385 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEEE------ecCCe
Confidence 144667788899999999988 478999999876432111 1334445665555442 111111 11122
Q ss_pred EEEEEcCCCC-----------C--------------------------CCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884 120 VQIYACGKDL-----------Q--------------------------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 120 v~i~~~~~~~-----------~--------------------------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
+++.++.... + ...+.... ..-....++.+|+++.+++..
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~-~~y~~s~vAv~~~~~~vaVGG-- 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP-IGYESSAVAVSPDGSEVAVGG-- 462 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec-cccccceEEEcCCCCEEEEec--
Confidence 2222211000 0 00000000 112334567788888776642
Q ss_pred cccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----EcCC
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGS 236 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~~~~ 236 (434)
.| | .+|...+.|. .+..+.+++.++|.++++|||+.+|| +++..+++.+||.....++ .||+
T Consensus 463 -~D-------g--kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla--~~Da~rkvv~yd~~s~~~~~~~w~FHt 530 (603)
T KOG0318|consen 463 -QD-------G--KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA--AGDASRKVVLYDVASREVKTNRWAFHT 530 (603)
T ss_pred -cc-------c--eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE--EeccCCcEEEEEcccCceecceeeeee
Confidence 11 2 2444444442 34445677899999999999999999 5787889999999765544 4699
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
..+++++|||+.+++|+|+ +|-.|.||+++.- +.+....+| .+..+.|--+ ..+++++. |..||+|+
T Consensus 531 akI~~~aWsP~n~~vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~------Da~iK~W~ 600 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQ------DANIKVWN 600 (603)
T ss_pred eeEEEEEeCCCceEEEecc---ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccC------cceeEEec
Confidence 9999999999999999999 5559999999865 334444455 6677999754 67788888 99999999
Q ss_pred ec
Q 013884 314 HN 315 (434)
Q Consensus 314 ~~ 315 (434)
++
T Consensus 601 v~ 602 (603)
T KOG0318|consen 601 VT 602 (603)
T ss_pred cc
Confidence 74
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=9.8e-25 Score=198.87 Aligned_cols=272 Identities=13% Similarity=0.208 Sum_probs=203.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|..|.|.|+|+.|+|++ ..+.+.+|+..+-.. .++.+ .|...|+++.||++|.+++++. ++.|++|+.+-.
T Consensus 99 V~~v~WtPeGRRLltgs-----~SGEFtLWNg~~fnF-EtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS-----QSGEFTLWNGTSFNF-ETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eeeEEEcCCCceeEeec-----ccccEEEecCceeeH-HHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 67899999999999998 779999999632211 11112 2447899999999999999995 469999997653
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+.+.|++++|||. +..++. ...+++|+||+... ..+...+..|..++.++.|+|.-..|+.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn-DskF~t-----~SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP~kgLias-- 239 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN-DSKFLT-----CSDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHPTKGLIAS-- 239 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC-CceeEE-----ecCCCeEEEEeccC---CchhheeccCCCCcceeccCCccceeEE--
Confidence 322223334578999999997 444432 24568999999987 6777778999999999999998654322
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~ 236 (434)
...|...+.| +...+ .|..++. +...|..+.|+|++++|+ +++.|..+++||++ -+.++.+ |+
T Consensus 240 -gskDnlVKlW---------DprSg-~cl~tlh~HKntVl~~~f~~n~N~Ll--t~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 240 -GSKDNLVKLW---------DPRSG-SCLATLHGHKNTVLAVKFNPNGNWLL--TGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred -ccCCceeEee---------cCCCc-chhhhhhhccceEEEEEEcCCCCeeE--EccCCceEEEEehhHhHHHHHhhcch
Confidence 3344444433 33333 4555443 478999999999999988 78899999999998 3444444 78
Q ss_pred cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 237 ~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
..++++.|+|--. +|.+|| .+|.|.+|.+...+.+..+ .+| .+.+++|+|=|..|++|+. |++++.|
T Consensus 307 kdv~~~~WhP~~~~lftsgg---~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn------d~t~rfw 377 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGG---SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN------DRTVRFW 377 (464)
T ss_pred hhheeeccccccccceeecc---CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC------Ccceeee
Confidence 9999999999765 666666 6689999998744444443 334 6778999999999999999 9999999
Q ss_pred ee
Q 013884 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
.-
T Consensus 378 ~r 379 (464)
T KOG0284|consen 378 TR 379 (464)
T ss_pred cc
Confidence 85
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=2.6e-23 Score=182.97 Aligned_cols=260 Identities=10% Similarity=0.189 Sum_probs=195.2
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
.|..+.|+|+|.+|+|.+ .|..|.+|++..... ...+.+ |...+..+.|+.|++.+++++ |.+|++||..
T Consensus 49 eI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred eEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 478899999999999988 899999999753322 233333 457888999999999999885 5699999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.+......+.|..-|..+. |.. +..+.+ ++..+++++|||+.. ...
T Consensus 121 tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~----SgsdD~t~kl~D~R~---k~~------------------------ 167 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLD--PSRRGPQLVC----SGSDDGTLKLWDIRK---KEA------------------------ 167 (338)
T ss_pred cceeeehhccccceeeecC--ccccCCeEEE----ecCCCceEEEEeecc---cch------------------------
Confidence 8776555666666666554 331 222221 344556777777644 111
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee--EEEc
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP--ILEL 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~--~~~~ 234 (434)
..++....+++++.|..++.+.. +|..|+.|++||++. .. +.+-
T Consensus 168 -------------------------------~~t~~~kyqltAv~f~d~s~qv~--sggIdn~ikvWd~r~~d~~~~lsG 214 (338)
T KOG0265|consen 168 -------------------------------IKTFENKYQLTAVGFKDTSDQVI--SGGIDNDIKVWDLRKNDGLYTLSG 214 (338)
T ss_pred -------------------------------hhccccceeEEEEEeccccccee--eccccCceeeeccccCcceEEeec
Confidence 11111245678899999888887 689999999999953 33 3344
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC------CceEEEECCCCCEEEEEEcCCcee
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~------~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
|..+|+.+..||+|.++++-+ ++.++++||++-. +++..++++ +...++|||+++++..++.
T Consensus 215 h~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~----- 286 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA----- 286 (338)
T ss_pred ccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-----
Confidence 889999999999999999888 4559999998743 568888765 4455999999999999998
Q ss_pred eCCcEEEEeecC-ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884 305 IDNGIKIFHHNG-SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 305 ~D~~i~iw~~~g-~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
|..+.+||..+ .++|+. +...+.++.|.|..+-+++..
T Consensus 287 -dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 287 -DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred -cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence 99999999988 567765 567899999999988887763
No 30
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=195.65 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=204.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~ 82 (434)
.|+||. .+.|+.+. ...|.+|+..+|+....+... .+.+.++.|+++|.+||.+ .++.|.|||......
T Consensus 182 lldWss-~n~laVal------g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL------GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred Hhhccc-CCeEEEEe------cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 467784 44555443 478999999999865555443 2778899999999999999 578999999877655
Q ss_pred ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEEEEE
Q 013884 83 GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 ~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
...... |...|.+++|... .+. .+...+.|..+++.. .+.+.. ...|..++|.++|++||.++ +
T Consensus 252 ~~~~~~~h~~rvg~laW~~~---~ls-----sGsr~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~l---A 317 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSS---VLS-----SGSRDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQL---A 317 (484)
T ss_pred cccccCCcCceeEEEeccCc---eEE-----EecCCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCee---c
Confidence 455555 6778999999843 222 345667888899876 333333 77899999999999999984 4
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCc
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~ 237 (434)
+...|.....|.+ ........-.++.+.|.+++|+| ....||+..|..|+.|++||... ..+... ...
T Consensus 318 SGgnDN~~~Iwd~---------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 318 SGGNDNVVFIWDG---------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred cCCCccceEeccC---------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 4555555443332 12212222234588999999999 55677776677888999999964 444444 577
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.|..|.|+|..+-|+++ .|..+..|.||+..+.+.+..+.+| .+..++|||||.+|++|+. |.++++|++-
T Consensus 389 QVcsL~Wsk~~kEi~st-hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f 461 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLST-HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLF 461 (484)
T ss_pred ceeeEEEcCCCCEEEEe-cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEecccc
Confidence 89999999999876654 2334569999999999999999888 5667999999999999999 9999999986
Q ss_pred Cc
Q 013884 316 GS 317 (434)
Q Consensus 316 g~ 317 (434)
+.
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 64
No 31
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.5e-22 Score=172.64 Aligned_cols=278 Identities=13% Similarity=0.183 Sum_probs=195.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~ 79 (434)
|.+|+|.-+|++|++.+ .|+.+.||++.-++.+....... |...+-.+.|.|- ..++++. ++.+|++||...
T Consensus 23 v~Sv~wn~~g~~lasgs-----~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGS-----FDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred ceEEEEcccCceeeecc-----cCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 57899999999999988 89999999998876655544433 3456668889873 3455555 677999999887
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
...........++ ..+.|+|++ .++++ .+.+..|...+..+ .+..... -++..+..+.|+.++. +.++
T Consensus 97 ~k~~~~i~~~~en-i~i~wsp~g-~~~~~-----~~kdD~it~id~r~---~~~~~~~-~~~~e~ne~~w~~~nd-~Ffl 164 (313)
T KOG1407|consen 97 GKCTARIETKGEN-INITWSPDG-EYIAV-----GNKDDRITFIDART---YKIVNEE-QFKFEVNEISWNNSND-LFFL 164 (313)
T ss_pred CcEEEEeeccCcc-eEEEEcCCC-CEEEE-----ecCcccEEEEEecc---cceeehh-cccceeeeeeecCCCC-EEEE
Confidence 5443323333343 457999994 44443 34556778888766 3333333 3445677889996555 4555
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcC
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELG 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~ 235 (434)
+.+- | .+..|.-..- +....+. |...+.++.|+|+|++|| +|+-|+.+.|||++ |.-.++-.
T Consensus 165 t~Gl---------G--~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA--~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 165 TNGL---------G--CVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFA--TGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred ecCC---------c--eEEEEecccc-ccccccccCCcceEEEEECCCCceEe--eccccceeeccChhHhhhheeeccc
Confidence 4321 1 2333332221 1122222 466778999999999999 58999999999985 44444446
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCce---eeCCcEEE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRL---QIDNGIKI 311 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl---~~D~~i~i 311 (434)
.-+|.+|.||-||++||+|+ .+--|.|-++++|..+..++....+. ++|+|....||.|.+.+.- |--+++||
T Consensus 231 dwpVRTlSFS~dg~~lASaS---EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKi 307 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASAS---EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKI 307 (313)
T ss_pred cCceEEEEeccCcceeeccC---ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEE
Confidence 78999999999999999999 55699999999999999988775554 9999999999999885422 22367888
Q ss_pred Eee
Q 013884 312 FHH 314 (434)
Q Consensus 312 w~~ 314 (434)
|-+
T Consensus 308 FG~ 310 (313)
T KOG1407|consen 308 FGL 310 (313)
T ss_pred ecC
Confidence 754
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.2e-23 Score=178.87 Aligned_cols=285 Identities=15% Similarity=0.248 Sum_probs=217.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
++.|.|..+|.+|.+++ .|....||-..+|+.+.++.++.. ..| |+...-+.++|++++ |+++++||+..+
T Consensus 13 lTqiKyN~eGDLlFsca-----KD~~~~vw~s~nGerlGty~GHtG--avW-~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCA-----KDSTPTVWYSLNGERLGTYDGHTG--AVW-CCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cceEEecCCCcEEEEec-----CCCCceEEEecCCceeeeecCCCc--eEE-EEEecCCcceeeeccccceeEEEEcCCC
Confidence 56789999999999999 899999999999999999998754 667 999999999999994 679999999986
Q ss_pred CCceeeeeec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCe
Q 013884 81 PKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
.. ...... ..|+.+.|+++ +.++++......+..+.|.+++++... ...++..+.-.....+.+-|+|.|+.
T Consensus 85 k~--la~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 85 KQ--LATWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred cE--EEEeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 54 333333 35889999998 566666677778899999999998532 24556656666677788999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~ 234 (434)
|+. .+.|.....|.-.++..+++.... +...|+++++|||..+|+ +++.|.+.++||.+. ..+.++
T Consensus 162 ii~---Ghe~G~is~~da~~g~~~v~s~~~--------h~~~Ind~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 162 IIA---GHEDGSISIYDARTGKELVDSDEE--------HSSKINDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEE---ecCCCcEEEEEcccCceeeechhh--------hccccccccccCCcceEE--ecccCccceeeeccceeeEEEe
Confidence 755 335555555555444444433332 256899999999999998 799999999999974 445555
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeE------------EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDM------------AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i------------~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
...|+|+.+++|.-.+++++|..+ .-.| ++|++--.+.+...++| .+..++|+|||+..++++.
T Consensus 229 ~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 229 TTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE 307 (327)
T ss_pred eecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence 578999999999999888887332 1112 22332223456677777 4556999999999999999
Q ss_pred CCceeeCCcEEEEeecCc
Q 013884 300 APRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~~g~ 317 (434)
|+.|||.++...
T Consensus 308 ------DG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 308 ------DGYVRLHHFDSN 319 (327)
T ss_pred ------CceEEEEEeccc
Confidence 999999987543
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=181.94 Aligned_cols=273 Identities=14% Similarity=0.183 Sum_probs=213.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|+.+-|.|+-...++++ +|.+|++||..+|++.+++.++. ..+..+.|+..|+++++++.+ .+++||...+
T Consensus 111 vt~v~~hp~~~~v~~as-----~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSAS-----EDATIKVFDTETGELERSLRGHT---DSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred eeeeeeccCceEEEEec-----CCceEEEEEccchhhhhhhhccc---cceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 56788999999999888 89999999999999988887654 557799999999999999776 5999998763
Q ss_pred -CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 81 -PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 -~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
++......+..+|.++.+=|.++..+. .+.+.+|+.|++.+ +-.+.+...+..=+..+.-+.||.. +
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS------~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti---~ 250 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILS------CSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTI---I 250 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeee------cccccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeE---E
Confidence 332233445568999999998544333 45667899999988 7888888888877778888888886 3
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCC--------------CEEEEEEccCCCeEEEE
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG--------------SEFAVVYGFMPASATIF 224 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg--------------~~~av~~g~~~~~i~l~ 224 (434)
++.+.|.+... |.+. ..++...+ .++-+|..++|.|.. .++.+ +++.|++|++|
T Consensus 251 As~s~dqtl~v-------W~~~---t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~SrDktIk~w 319 (406)
T KOG0295|consen 251 ASCSNDQTLRV-------WVVA---TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG-SGSRDKTIKIW 319 (406)
T ss_pred EecCCCceEEE-------EEec---cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE-eecccceEEEE
Confidence 44555655553 3332 12233322 347788888888742 13443 68899999999
Q ss_pred ecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884 225 NKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 225 d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
|+. +..++++ |...|..++|+|.|+||+++. .|+++++||+++++++...++| -++.++|.-+-.|++||+-
T Consensus 320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 995 6777777 788999999999999999998 6679999999999999998876 5667999999999999998
Q ss_pred CCceeeCCcEEEEee
Q 013884 300 APRLQIDNGIKIFHH 314 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~ 314 (434)
|.++++|..
T Consensus 397 ------dqt~KvwEc 405 (406)
T KOG0295|consen 397 ------DQTVKVWEC 405 (406)
T ss_pred ------cceeeeeec
Confidence 999999964
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=2.8e-23 Score=193.23 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=202.3
Q ss_pred CcceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013884 1 MLLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~ 77 (434)
.|+++.|.| .|.+|++++ .|+.|+||++-. +.++++|.+++ ..|..+.||.+|..+.++ .|..|++||+
T Consensus 216 gvsai~~fp~~~hLlLS~g-----mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGG-----MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred ccchhhhccceeeEEEecC-----CCceEEEEEEecCcceehhhhcch---hhhhhhhccccCCeeeeeecceeeeeecc
Confidence 478999999 899999988 899999999976 89999999865 788899999999877776 6889999999
Q ss_pred CCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 78 TDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
+.+. ...+++... +..+.+.|++.+.+.+ ++.++.|+.||+.+ +..+....-+-..+..+.|-++|++.
T Consensus 288 ETG~--~~~~f~~~~~~~cvkf~pd~~n~fl~-----G~sd~ki~~wDiRs---~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 288 ETGQ--VLSRFHLDKVPTCVKFHPDNQNIFLV-----GGSDKKIRQWDIRS---GKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ccce--EEEEEecCCCceeeecCCCCCcEEEE-----ecCCCcEEEEeccc---hHHHHHHHhhhhheeeeEEccCCceE
Confidence 9865 344555543 5678999996344332 57788999999988 66666666666777889999999986
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc------ee
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------RP 230 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~------~~ 230 (434)
+.. ..|++...| ..++.-.....+. ...-...++..+|+++.|+ ..+|+..|.+|.+.. ..
T Consensus 358 iss---SDdks~riW-------e~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~--aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 358 ISS---SDDKSVRIW-------ENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA--AQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eee---ccCccEEEE-------EcCCCccchhhcc-hhhccCcceecCCCCCeeh--hhccCceEEEEecccccccCHhh
Confidence 442 244444433 2211111000000 0122445789999999999 688999999997531 11
Q ss_pred EEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCE-EEEEEcCCceee
Q 013884 231 ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRY-FMTATTAPRLQI 305 (434)
Q Consensus 231 ~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~-l~tas~~~rl~~ 305 (434)
.+.-| .+--..+.|||||++|++|. .+|.+.+||.++-+++..+.+|. .+.+.|.|.... ++|++-
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGd---sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w------ 495 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGD---SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW------ 495 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeec---CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc------
Confidence 22222 34456799999999999987 66899999999999999999883 344999998664 555555
Q ss_pred CCcEEEEe
Q 013884 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
||.|+||+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-20 Score=167.96 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=195.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~ 78 (434)
|.+|.||++|.+|++.+ +|..|+|||..+|+.++++..+. .++..+.|......+..++ |++|+..++.
T Consensus 17 i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVKTINSKK---YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred eeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceeeEeeccc---ccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 68999999999999988 88999999999999999988776 4666889988776666553 5799999988
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+..-......|...|.+++.+|.++..+. .+.+.+|++|++.. ..+...+.. ......++.|+|-.+++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS------~S~D~tvrLWDlR~---~~cqg~l~~--~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLS------SSLDKTVRLWDLRV---KKCQGLLNL--SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEe------cccCCeEEeeEecC---CCCceEEec--CCCcceeECCCCcEEEE
Confidence 76554556677888999999998765553 46678999999975 333322222 23335678999876655
Q ss_pred EEEecccccCceeecceeEEEEeeCCCc-eeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~ 234 (434)
...+ ..+ .||.+...+.. -..+.+. .......+.|||||+.+.+. .+.+.+.+.|. ++....++
T Consensus 158 ~~~~---~~I-------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls--T~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 158 ANGS---ELI-------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS--TNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred ecCC---CeE-------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE--eCCCcEEEEEccCCcEeeeE
Confidence 4221 122 35655544321 2222232 35678899999999999974 45668888887 55555555
Q ss_pred --CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeC
Q 013884 235 --GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 --~~~~---~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
+... --...|+|||++++++. .+|+|.+|++++++.+..+.+. .+.++.|+|.--.+++|++
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs---~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s------- 295 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGS---DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS------- 295 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEec---CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------
Confidence 2111 14689999999999887 5689999999999999988874 3445899998777766654
Q ss_pred CcEEEEee
Q 013884 307 NGIKIFHH 314 (434)
Q Consensus 307 ~~i~iw~~ 314 (434)
.+-+|-.
T Consensus 296 -~l~fw~p 302 (311)
T KOG1446|consen 296 -NLVFWLP 302 (311)
T ss_pred -eEEEEec
Confidence 5566654
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=1.9e-21 Score=167.00 Aligned_cols=243 Identities=12% Similarity=0.103 Sum_probs=180.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|..|..+||+++|++++ ...|++||+.++. ++.+|..+. .++.++.|-.||+.+++++ |++++|||+.
T Consensus 43 VNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred eeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccC---CceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 67899999999999876 5789999998875 578887754 6788999999999999996 5799999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~ 157 (434)
......... +...|.++.++|+...+|. +.+.+.|++||+.+. ....++. .-...+.++.-.|||+.++
T Consensus 114 ~~~~qR~~~-~~spVn~vvlhpnQteLis------~dqsg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 114 SLSCQRNYQ-HNSPVNTVVLHPNQTELIS------GDQSGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred Ccccchhcc-CCCCcceEEecCCcceEEe------ecCCCcEEEEEccCC---ccccccCCCCCcceeeEEEcCCCcEEE
Confidence 855432222 3367999999998544443 467789999999652 2211111 1123455778899999876
Q ss_pred EEEEecccccCceeecceeEEEEeeCCC--ceeeeecC----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLR----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-- 229 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~----~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-- 229 (434)
... ..+ ++|.++..+. ....+++. +++.+....+|||++++| +++.|.+++||+.+.-
T Consensus 184 a~n-----nkG-------~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la--t~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 184 AAN-----NKG-------NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA--TCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred Eec-----CCc-------cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE--eecCCceEEEEecCCcee
Confidence 642 222 2444444332 12334443 478899999999999999 5667889999988644
Q ss_pred --eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 230 --PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 230 --~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
...+-|..-+-.++||-||+||++|+.+ +.+++||+..++.+....+|
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd---~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSD---HTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCC---CceeecccccCceeeecCCc
Confidence 3333467788999999999999999954 59999999999999988887
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=180.41 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=215.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-----cCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN-----MTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~-----~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
+-|..|||||+||++.+ -|+-|.|||.-+|+.-..+.... +....+.|+.||.|...+|+++ |+.|+||
T Consensus 216 ~EcA~FSPDgqyLvsgS-----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGS-----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred hhheeeCCCCceEeecc-----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45789999999999988 89999999999997643322110 1236678999999999999995 6899999
Q ss_pred eCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 76 DTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
.+..+.+.... +.|..+|.++.||.|+...+. .+.+.+++|.-+.+ ++.+.....|..-+....|++||.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS------~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS------ASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhc------ccccceEEEecccc---chhHHHhcCccccccceEEcCCCC
Confidence 99887654333 367789999999999554443 46677899999988 788888778888888999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 234 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~ 234 (434)
+++.. ..|.+.+.|.+.++= .+ ....++..+.+|+++-.-|....-.++ +....++.|.++.++.+.+|
T Consensus 362 ~iisa---SsDgtvkvW~~Ktte-C~------~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 362 HIISA---SSDGTVKVWHGKTTE-CL------STFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred eEEEe---cCCccEEEecCcchh-hh------hhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEeccceEEeee
Confidence 97653 367777777665431 11 111233447789999888866544443 45567999999999999988
Q ss_pred C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 235 G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 ~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
. .+..-++..||.|.++.+.| .++.++.|.+.+|++-.++.-| .++.++-+|....|++-+. |+
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcig---ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE------Dg 501 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIG---EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE------DG 501 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEc---cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc------cc
Confidence 3 45667788999999999998 7789999999999877766655 7777999999999999999 99
Q ss_pred cEEEEe
Q 013884 308 GIKIFH 313 (434)
Q Consensus 308 ~i~iw~ 313 (434)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999995
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=3.6e-22 Score=196.03 Aligned_cols=236 Identities=13% Similarity=0.198 Sum_probs=189.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-------------------------------EEEEEeecCcCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------------------------------AVYQLFQKNMTKT 50 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------------------------------~~~~~~~~~~~~~ 50 (434)
|.|..||+|++.||.+- .|..|+||.+...+ ..+++.+ |.+
T Consensus 381 v~ca~fSddssmlA~Gf-----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G---H~G 452 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGF-----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG---HSG 452 (707)
T ss_pred ceeEeecCCcchhhccc-----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec---CCC
Confidence 68999999999888655 67889999875311 1122333 335
Q ss_pred CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884 51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
.|-.+.|+||.++|++++ |.+|++|.+..+......+.|...|..+.|+|- +.++| +.+.+.+-++|....
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFa-----tas~D~tArLWs~d~-- 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFA-----TASHDQTARLWSTDH-- 524 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEE-----ecCCCceeeeeeccc--
Confidence 666889999999999996 579999999998887888889889999999998 55555 346677889999988
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~ 209 (434)
..+++..-.|-+++-++.|+|+..+++. ...|++.+.|... .+...++-..|.++|.+++|||+|++
T Consensus 525 -~~PlRifaghlsDV~cv~FHPNs~Y~aT---GSsD~tVRlWDv~---------~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 525 -NKPLRIFAGHLSDVDCVSFHPNSNYVAT---GSSDRTVRLWDVS---------TGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -CCchhhhcccccccceEEECCccccccc---CCCCceEEEEEcC---------CCcEEEEecCCCCceEEEEEcCCCce
Confidence 8899888899999999999999998543 4577887765432 22244555567899999999999999
Q ss_pred EEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 210 FAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++ +|+.++.|.+||+.. ..+.++ |++.+.++.||.||..|+++|.|| +|.+||+..-
T Consensus 592 La--Sg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~~ 651 (707)
T KOG0263|consen 592 LA--SGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTKV 651 (707)
T ss_pred Ee--ecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchhh
Confidence 99 799999999999975 555555 789999999999999999999666 9999998754
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1e-19 Score=171.76 Aligned_cols=282 Identities=12% Similarity=0.075 Sum_probs=182.3
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013884 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~ 89 (434)
+.++|.+ .|+.|++||+.+++.+..+... ..+..+.|+||+++++ ++ .++.|.+||....... ..+.
T Consensus 2 ~~~~s~~-----~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~ 70 (300)
T TIGR03866 2 KAYVSNE-----KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP 70 (300)
T ss_pred cEEEEec-----CCCEEEEEECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc
Confidence 4566666 7899999999999988887654 2344799999998764 44 4579999998775432 2222
Q ss_pred -cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013884 90 -VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN 168 (434)
Q Consensus 90 -~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~ 168 (434)
...+..+.|+|++. .+.+. ...++.+.+|++.. .+.+..... ......+.|+|+|..+++... +..
T Consensus 71 ~~~~~~~~~~~~~g~-~l~~~----~~~~~~l~~~d~~~---~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~- 137 (300)
T TIGR03866 71 SGPDPELFALHPNGK-ILYIA----NEDDNLVTVIDIET---RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE---TTN- 137 (300)
T ss_pred CCCCccEEEECCCCC-EEEEE----cCCCCeEEEEECCC---CeEEeEeeC-CCCcceEEECCCCCEEEEEec---CCC-
Confidence 23466788999854 33222 13346899999976 444444332 233567999999998766421 111
Q ss_pred ceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc--CC-----c--C
Q 013884 169 QSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GS-----G--P 238 (434)
Q Consensus 169 ~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~--~~-----~--~ 238 (434)
.++.++.... .....+........++|+|+|+.+++ .+..++.+.+||++... +..+ +. . .
T Consensus 138 -------~~~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 138 -------MAHFIDTKTY-EIVDNVLVDQRPRFAEFTADGKELWV-SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred -------eEEEEeCCCC-eEEEEEEcCCCccEEEECCCCCEEEE-EcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 1222333222 11111112334578999999998875 45567899999997443 2322 11 1 1
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
...+.|+|+|++++++..++ +.|.+||+++++.+.... ++.+..++|+|||++|+++... ++.|+|||..+.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~ 281 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAAL 281 (300)
T ss_pred ccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCC
Confidence 24588999999876654332 579999999988776543 4467779999999999887532 899999999654
Q ss_pred -eeeeeec-ccceeeEEE
Q 013884 318 -LFFKKMF-DKLFQAEWK 333 (434)
Q Consensus 318 -~~~~~~~-~~~~~~~w~ 333 (434)
++..... .+.+.+..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 282 KVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred cEEEEEEcccccceeEeC
Confidence 3444333 234555443
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=3.4e-21 Score=173.15 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=215.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|+||+|-|-..+++|.+ .|++++|||+++|+...++.++- ..+..+++|+-.-|+.+++ |++|+.||+...
T Consensus 154 Vr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi---~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHI---ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred EEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchh---heeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 78999999999999988 89999999999999988887653 6788899999999998875 569999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
.....+..|+.+|.+++++|..+ .++ +++.+..+++||+.. ...+..+..|+..+.++..+|-.-.++.
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTld-vl~-----t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit-- 294 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLD-VLV-----TGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVIT-- 294 (460)
T ss_pred hhHHHhccccceeEEEeccccce-eEE-----ecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEE--
Confidence 65566778899999999999833 333 467889999999998 8899999999999999999886555432
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEE--cCCc
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILE--LGSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~--~~~~ 237 (434)
+..|.+.+ ||.+. .+.....-..++..|.+++.+|....|| +++ +..+.-|++ ++..+.. .|+.
T Consensus 295 -~S~D~tvr-------lWDl~--agkt~~tlt~hkksvral~lhP~e~~fA--Sas-~dnik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 295 -GSHDSTVR-------LWDLR--AGKTMITLTHHKKSVRALCLHPKENLFA--SAS-PDNIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred -ecCCceEE-------Eeeec--cCceeEeeecccceeeEEecCCchhhhh--ccC-CccceeccCCccchhhccccccc
Confidence 23555554 44442 2222222334577899999999988888 444 447888887 3444433 3788
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE---eeCC-------CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT---TRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~---~~~~-------~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
-+|++..+.||-++ +|+ .+|.|.+||.+++-.... ...+ .+...+|...|..|+|+.. |.
T Consensus 362 iintl~~nsD~v~~-~G~---dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea------dK 431 (460)
T KOG0285|consen 362 IINTLSVNSDGVLV-SGG---DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA------DK 431 (460)
T ss_pred eeeeeeeccCceEE-EcC---CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC------Cc
Confidence 89999999988654 454 458999999998733322 2221 4566899999999999999 99
Q ss_pred cEEEEeecCceeeeeecccceeeEEEcC
Q 013884 308 GIKIFHHNGSLFFKKMFDKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~~g~~~~~~~~~~~~~~~w~p~ 335 (434)
+|++|.-+...-.+. --+.|+|.
T Consensus 432 tIk~~keDe~aT~Et-----hPl~w~P~ 454 (460)
T KOG0285|consen 432 TIKMYKEDEHATEET-----HPLNWKPE 454 (460)
T ss_pred ceEEEecccccCccc-----CCcCCCCc
Confidence 999998644322221 12567764
No 41
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=183.77 Aligned_cols=284 Identities=13% Similarity=0.166 Sum_probs=198.5
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecC-cCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKN-MTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
+|++|+|-|.|-.|+|++ .|..|++||...-.. .+.|.+-. .....+.+++||+.|..++..+ ..+.+|+|-
T Consensus 169 ~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred EEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 589999999999999988 899999999864422 22222211 1124566899999987776664 459999997
Q ss_pred CCCCCce------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeee--eccc
Q 013884 78 TDFPKGI------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRS--FFRC 142 (434)
Q Consensus 78 ~~~~~~~------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~--~~~~ 142 (434)
..+.... ..+.|+..+++-+|+|.....+. +.+.++++|||++.+... .+.+..+. ..+.
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl-----T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL-----TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE-----EecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 6654322 23456667888899998655443 236678999999987431 22222222 2345
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCCceeeeecCC--CCCeEEEEECcCCCEEEEEEccCCC
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRK--EGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~--~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
......||+||+.|+..+ .|.+++.|. +...+. - ...+.-.| ...|.++.||+||++|+ +...|.
T Consensus 319 ~~tsC~~nrdg~~iAagc---~DGSIQ~W~~~~~~v~-----p--~~~vk~AH~~g~~Itsi~FS~dg~~Ll--SRg~D~ 386 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGC---LDGSIQIWDKGSRTVR-----P--VMKVKDAHLPGQDITSISFSYDGNYLL--SRGFDD 386 (641)
T ss_pred CceeeecCCCcchhhhcc---cCCceeeeecCCcccc-----c--ceEeeeccCCCCceeEEEeccccchhh--hccCCC
Confidence 667889999999865433 677777663 221110 0 00111112 34899999999999999 567788
Q ss_pred eEEEEecc--ceeEEEc----CCcCeeEEEECCCCCeEEEEec---CCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013884 220 SATIFNKK--CRPILEL----GSGPYNTVRWNPKGKFLCLAGF---GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 220 ~i~l~d~~--~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~---~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws 288 (434)
.+++||++ .++++.. ...+-+.++|||+.++|++|.. +...|+++|||..+.+.+..+.-. .++.|.|+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 99999997 3445443 2455678999999999999864 224689999999999888877654 44559999
Q ss_pred CCCCEEEEEEcCCceeeCCcEEEE
Q 013884 289 PDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 289 pdg~~l~tas~~~rl~~D~~i~iw 312 (434)
|-=..|..++. ||+++|+
T Consensus 467 pkLNQi~~gsg------dG~~~vy 484 (641)
T KOG0772|consen 467 PKLNQIFAGSG------DGTAHVY 484 (641)
T ss_pred chhhheeeecC------CCceEEE
Confidence 99999999988 9999985
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=3.8e-21 Score=166.26 Aligned_cols=260 Identities=14% Similarity=0.221 Sum_probs=189.0
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|+.||..|+++ .+.++.||++..... ....+.+...|..+.|+|.....++... .+..|++|++.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir~wd~r 95 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIRIWDIR 95 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-----CCceEEEEEec
Confidence 566799999999999999 577999999875422 2234455667888999998666666533 34589999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. .+++.+... +.+...+.|+|+|.++++.- +... |-.+++... ......+....++.++|+-+
T Consensus 96 ~---~k~~~~i~~-~~eni~i~wsp~g~~~~~~~-----kdD~-------it~id~r~~-~~~~~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 96 S---GKCTARIET-KGENINITWSPDGEYIAVGN-----KDDR-------ITFIDARTY-KIVNEEQFKFEVNEISWNNS 158 (313)
T ss_pred c---CcEEEEeec-cCcceEEEEcCCCCEEEEec-----Cccc-------EEEEEeccc-ceeehhcccceeeeeeecCC
Confidence 8 677766554 45667899999999987742 2222 334443222 11122222567889999977
Q ss_pred CCEEEEEEccCCCeEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884 207 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
+..|++-.| .|.|.|..- .-+++.++ |....-||.|+|+|+++|+|+.| ..+.+||++..-++..+... .
T Consensus 159 nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 159 NDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred CCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccChhHhhhheeeccccCc
Confidence 777776433 468887654 34555555 56666678899999999999954 59999999988777766554 4
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
+-.+.||-||++||+|+. |.-|-|=++ +|..+.+.+. .+.+.|+|+|..+.|..+
T Consensus 234 VRTlSFS~dg~~lASaSE------Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASE------DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred eEEEEeccCcceeeccCc------cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence 556999999999999999 999988777 7888877755 589999999986655443
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.5e-20 Score=171.70 Aligned_cols=261 Identities=17% Similarity=0.240 Sum_probs=190.7
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
...+.++.|+|++++++++. ++.|.+|+............+...+..+.|+|++ ..+++ .+.++.+.+|++..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-----~~~~~~i~i~~~~~ 82 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLAS-----GSSDKTIRLWDLET 82 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEE-----EcCCCeEEEEEcCc
Confidence 36777999999999999886 7899999998755433444455667899999984 44433 23467999999987
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC
Q 013884 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS 206 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd 206 (434)
.+.+.....+...+..+.|++++..++... .|.. ++.++.... .....+ .+...|.+++|+|+
T Consensus 83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~---------i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKT---------IKVWDVETG-KCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred ---ccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCe---------EEEEECCCc-EEEEEeccCCCcEEEEEEcCc
Confidence 566666667777889999999977554421 1222 333333322 122222 34678999999999
Q ss_pred CCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
+..++ ++..++.+.+||++ ...+..+ +...+.++.|+|+++.+++++ .+|.|.+||+.+++.+..+..+ .
T Consensus 147 ~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~ 221 (289)
T cd00200 147 GTFVA--SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENG 221 (289)
T ss_pred CCEEE--EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCc
Confidence 77666 35568899999996 3333333 567899999999999999888 3579999999988888777444 4
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013884 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
+..+.|+|++.++++++. |+.+++|++. ++.+... +...+..+.|.|.+..++..
T Consensus 222 i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 222 VNSVAFSPDGYLLASGSE------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred eEEEEEcCCCcEEEEEcC------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 566999999999999987 9999999996 5544443 33468999999987666654
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5e-21 Score=163.22 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=199.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|+++.|.-||+|.+|++ .|++|++|+...|.+++++.++. ..+..++-+.|+..+|++ +|..|++||++.+
T Consensus 20 V~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCC---ceeeeccccccccccccCCCCceEEEEEcccC
Confidence 78999999999999999 89999999999999999998865 556677888888777666 5679999999997
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
......+.|...|+.+.|.-. ...++ +++.+..+++|+..+.+ ..|+..+.-++..+.++..+. +.++.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNee-sSVv~-----SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIva- 160 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEE-SSVVA-----SGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVA- 160 (307)
T ss_pred eeeeecccccceeeEEEecCc-ceEEE-----eccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEe-
Confidence 766666778888999998765 23333 46778899999998755 677777776777776666543 23332
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--C-
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G- 235 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~- 235 (434)
..+|.+.+. |.+.... ...+ -..||+++.||+||+... .+.+++.+++.|.++..+ .++ |
T Consensus 161 -GS~DGtvRt-------ydiR~G~-----l~sDy~g~pit~vs~s~d~nc~L--a~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 161 -GSVDGTVRT-------YDIRKGT-----LSSDYFGHPITSVSFSKDGNCSL--ASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred -eccCCcEEE-------EEeecce-----eehhhcCCcceeEEecCCCCEEE--EeeccceeeecccchhHHHHHhcccc
Confidence 224555543 3332111 1111 156999999999998776 488999999999865443 333 2
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
......++++....+++.|+ .+|.|++||+.+...+..+..+. +..+++.|.-.-|++|+ +..+..
T Consensus 226 n~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-------~~~~~~ 295 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-------GHGDLF 295 (307)
T ss_pred cceeeeeeeecccceeEEecc---CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-------CCceec
Confidence 23345577887778888777 78999999999999999988773 44599999999999988 556666
Q ss_pred Ee
Q 013884 312 FH 313 (434)
Q Consensus 312 w~ 313 (434)
|-
T Consensus 296 ~~ 297 (307)
T KOG0316|consen 296 WY 297 (307)
T ss_pred ee
Confidence 63
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.5e-22 Score=194.85 Aligned_cols=233 Identities=10% Similarity=0.189 Sum_probs=174.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--------------------------------------------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------------------------------------------- 37 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------------------------------------------- 37 (434)
|+++.|||||+||||++ +|+.|+||.+..-+
T Consensus 270 Iw~mKFS~DGKyLAsaG-----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAG-----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred EEEEEeCCCCceeeecC-----CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 89999999999999999 99999999885500
Q ss_pred ----------------EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013884 38 ----------------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 38 ----------------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~ 101 (434)
+++.|.+ |...+..+.||.++-+|-+..|.+|++|.+....++ ..-.|.+-|++++|+|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhc---cchhheecccccCCeeEeccccccEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence 0011111 446677899999888888789999999999875542 23356678999999998
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
++.++. ++..++.||||+++.. +. +.|+. |
T Consensus 421 DDryFi-----SGSLD~KvRiWsI~d~---~V-------------v~W~D-------------------------l---- 450 (712)
T KOG0283|consen 421 DDRYFI-----SGSLDGKVRLWSISDK---KV-------------VDWND-------------------------L---- 450 (712)
T ss_pred CCCcEe-----ecccccceEEeecCcC---ee-------------Eeehh-------------------------h----
Confidence 777665 5778899999999761 10 11110 0
Q ss_pred eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c----C------CcCeeEEEECCCCC-
Q 013884 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L----G------SGPYNTVRWNPKGK- 249 (434)
Q Consensus 182 ~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~----~------~~~~~~i~~sP~g~- 249 (434)
..-|++++|+|||+..+| |...|.+++|+.++..+.. + + ...|+.+.|.|...
T Consensus 451 -------------~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 451 -------------RDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred -------------hhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 346789999999877664 8889999999987544332 1 1 23688999988543
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
-|++.+.| ..|+|+|.++.+++..+.+. .-+.-.|+.||+||++++. |..|+||++...
T Consensus 516 ~vLVTSnD---SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se------Ds~VYiW~~~~~ 578 (712)
T KOG0283|consen 516 EVLVTSND---SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE------DSWVYIWKNDSF 578 (712)
T ss_pred eEEEecCC---CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec------CceEEEEeCCCC
Confidence 45556634 59999999888888888865 2234799999999999998 999999998543
No 46
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=3.5e-21 Score=195.07 Aligned_cols=289 Identities=17% Similarity=0.246 Sum_probs=199.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|.+|+.||||..++|++.- .|+.++||+.+.- +.+.+. ..|...+.|+.||+||+|||+|+|
T Consensus 16 IfSIdv~pdg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m---~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTM---DDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred EEEEEecCCceeEecCCcc---ccccceeeccccccchhhhhhcccchhheee---ccccCceeEEEECCCCCeEeeccC
Confidence 5689999999999998732 4677779986321 112222 224578889999999999999987
Q ss_pred C-eEEEEeCCC------CCC------------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 70 N-EIQFFDTTD------FPK------------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 70 ~-~i~v~~~~~------~~~------------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
+ -|.||+-.. +.. ......|...|.++.|+|+ +.+++ +.+.+.+|-||+..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lv-----S~s~DnsViiwn~~t--- 160 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLV-----SVSLDNSVIIWNAKT--- 160 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEE-----EecccceEEEEcccc---
Confidence 6 789998762 110 1122335567999999997 55555 357788999999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~ 209 (434)
...+.....|..-+-.+.|.|-|++++. ...|++.+.|. .+.++... +.+-++ . ......+..+.|||||.+
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~AS---qsdDrtikvwrt~dw~i~k~-It~pf~-~--~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFAS---QSDDRTLKVWRTSDWGIEKS-ITKPFE-E--SPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeee---ecCCceEEEEEcccceeeEe-eccchh-h--CCCcceeeecccCCCcCe
Confidence 5778888889999999999999999644 45788888664 22111111 011110 0 011345678999999999
Q ss_pred EEEEEccCCC--eEEEEeccc---eeEEEcCCcCeeEEEECCC--------C------CeEEEEecCCCCCeEEEEEccC
Q 013884 210 FAVVYGFMPA--SATIFNKKC---RPILELGSGPYNTVRWNPK--------G------KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 210 ~av~~g~~~~--~i~l~d~~~---~~~~~~~~~~~~~i~~sP~--------g------~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
|++..+...+ .+.|.+-.+ ..-.--|.+++.+++|+|. | .+.+++..|.-|+.|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9976443322 677776532 2222338899999999991 1 1222222233678999999876
Q ss_pred CEEEEE---eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 271 GKQLGT---TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 271 ~~~i~~---~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.+.+.. +-...+++++|||||..|+.++. |++|.+.+++.+.
T Consensus 314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~------DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL------DGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhhhhhcCceeeeeEcCCCCeEEEEec------CCeEEEEEcchHH
Confidence 665443 33457888999999999999999 9999999996543
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.88 E-value=4.9e-22 Score=181.34 Aligned_cols=236 Identities=13% Similarity=0.134 Sum_probs=179.2
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
+|+++.||++|++++++. .++-|++|+.. ...+..+..+ |.+.+++++|||+++.++++ .||+|+|||...
T Consensus 140 ~Vr~m~ws~~g~wmiSgD-----~gG~iKyWqpn-mnnVk~~~ah--h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGD-----KGGMIKYWQPN-MNNVKIIQAH--HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred cceeEEEccCCCEEEEcC-----CCceEEecccc-hhhhHHhhHh--hhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 489999999999999987 88999999854 3445555544 34889999999977666666 568999999866
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.....+.+.|.-.|+++.|+|. ...|+. ++.+..|++||..+ +.+++++..|+..+..+.|+++|++|+.+
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~-kgLias-----gskDnlVKlWDprS---g~cl~tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPT-KGLIAS-----GSKDNLVKLWDPRS---GSCLATLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred CchhheeccCCCCcceeccCCc-cceeEE-----ccCCceeEeecCCC---cchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence 5444455666667999999998 566664 45566999999988 89999999999999999999999887654
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---C
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---G 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~ 235 (434)
..|...+. +.+. ...+...--.++..|.++.|+|-..-+.+ +|..|+.+..|.+- .+++-.+ |
T Consensus 283 ---skD~~~kv-------~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~~~lft-sgg~Dgsvvh~~v~~~~p~~~i~~AH 349 (464)
T KOG0284|consen 283 ---SKDQSCKV-------FDIR--TMKELFTYRGHKKDVTSLTWHPLNESLFT-SGGSDGSVVHWVVGLEEPLGEIPPAH 349 (464)
T ss_pred ---cCCceEEE-------Eehh--HhHHHHHhhcchhhheeecccccccccee-eccCCCceEEEeccccccccCCCccc
Confidence 24555443 2222 11122222224778999999996665555 57789999999886 4455444 6
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.+.|.+++|+|-|.+||+|+.+ .++++|...
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd---~t~rfw~r~ 380 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSND---RTVRFWTRN 380 (464)
T ss_pred ccceeeeeccccceeEeecCCC---cceeeeccC
Confidence 7889999999999999998855 499999764
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9.1e-21 Score=173.26 Aligned_cols=272 Identities=15% Similarity=0.224 Sum_probs=189.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.| .++||++|+|||+++ |.+..||++..... ......|...|..+.||||....+++ +....+.+|++
T Consensus 226 EVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC------g~~e~~~lwDv 298 (519)
T KOG0293|consen 226 EVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC------GFDEVLSLWDV 298 (519)
T ss_pred cEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec------CchHheeeccC
Confidence 667 899999999999996 45899998765332 22233456789999999996555654 34445899999
Q ss_pred CCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884 126 GKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 126 ~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws 204 (434)
.+ +....... .+.-...+..|.|||..+++. + .|. +++.++.+|.....-.-.....|++++.+
T Consensus 299 ~t---gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-s--~dr---------~i~~wdlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 299 DT---GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-S--PDR---------TIIMWDLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred Cc---chhhhhcccCcCCCcceeEEccCCceeEec-C--CCC---------cEEEecCCcchhhcccccccceeEEEEEc
Confidence 87 33222111 123456788999999996442 1 232 23444444432110000013468999999
Q ss_pred cCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884 205 YSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+||+.+..+. .|..+.+|+.....-..+ ...+++++..|.||+++++.-. +..|.+||++..+.+..+.+|
T Consensus 364 ~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 364 YDGKYVLLVT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred CCCcEEEEEe--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccc
Confidence 9999998753 578999999864332212 4688999999999999988763 349999999988888777765
Q ss_pred --CceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCCchhhhhccCccc
Q 013884 281 --CSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 354 (434)
Q Consensus 281 --~~~~~~ws-pdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~ 354 (434)
.++.-+|- -+..++++|+. |..|+|||. +|+++... +...+.+|+|+|..+..|.... +.+.++
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSE------D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas----DDgtIR 508 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSE------DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS----DDGTIR 508 (519)
T ss_pred cceEEEeccCCCCcceEEecCC------CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC----CCCeEE
Confidence 34444554 45589999999 999999998 67777664 5568999999999999887642 233456
Q ss_pred cccc
Q 013884 355 VAET 358 (434)
Q Consensus 355 ~~~~ 358 (434)
|+.|
T Consensus 509 IWg~ 512 (519)
T KOG0293|consen 509 IWGP 512 (519)
T ss_pred EecC
Confidence 6665
No 49
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.5e-20 Score=164.48 Aligned_cols=274 Identities=16% Similarity=0.227 Sum_probs=177.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v 74 (434)
|++|+||.||++|+|++ .|+.|+||++.+-+ +++.-.. ...-+.+.|+||-+-++.. ..++|++
T Consensus 89 vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred eeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCEEEE
Confidence 78999999999999999 89999999997632 2222111 1223478999998766554 4579999
Q ss_pred EeCCCCCC--cee-----eeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 75 FDTTDFPK--GIL-----YRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 75 ~~~~~~~~--~~~-----~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
|.+..... ... ..++++ .+.++-...+ ..+|+.. ..+..|.||++. ++.+........
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsa-----s~dt~i~lw~lk----Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSA-----SLDTKICLWDLK----GQLLQSIDTNQS 229 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEe-----cCCCcEEEEecC----Cceeeeeccccc
Confidence 98743111 111 111121 2333433332 3444432 344579999986 455655555555
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecC-CCCCeEEEEECcCCCEEEEEEccCC
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~ 218 (434)
.....+.||+|++|++.. .....+.|.- +| .-+|.+. ..+.|. +...|+.++|||++.+++ +-+.|
T Consensus 230 ~n~~aavSP~GRFia~~g---FTpDVkVwE~---~f--~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkD 299 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSG---FTPDVKVWEP---IF--TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKD 299 (420)
T ss_pred cccceeeCCCCcEEEEec---CCCCceEEEE---Ee--ccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecC
Confidence 666778899999987754 3333333310 01 1122211 112232 467899999999999998 56789
Q ss_pred CeEEEEecccee--------EEEc-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---CC
Q 013884 219 ASATIFNKKCRP--------ILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---AE 280 (434)
Q Consensus 219 ~~i~l~d~~~~~--------~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---~~ 280 (434)
|+++|||.+-+- +.++ +..++ .+..||.|+.|+++ ++. ++.++..++++....++ ..
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s-~gs---~l~~~~se~g~~~~~~e~~h~~ 374 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVS-FGS---DLKVFASEDGKDYPELEDIHST 374 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEee-cCC---ceEEEEcccCccchhHHHhhcC
Confidence 999999874211 1111 22333 68999999999876 444 89999999887665554 34
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe-ecC
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNG 316 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~-~~g 316 (434)
.+++++|+|||++++|++ |..+++.+ ..|
T Consensus 375 ~Is~is~~~~g~~~atcG-------dr~vrv~~ntpg 404 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCG-------DRYVRVIRNTPG 404 (420)
T ss_pred ceeeEEecCCCcEEeeec-------ceeeeeecCCCc
Confidence 777899999999999998 78888877 444
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=8.7e-20 Score=177.81 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=219.5
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeee-ecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIR-FSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~-~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~ 101 (434)
.|.++.++|..+++.+.++.+.+ +.+..+. |-|++++||.+.+ .++++|+...... .....|.+.|.++....+
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred ccceEEEEEccccEEehhhcCCc---hhheeeeecCCccceEEEEeCCCceEEEecCCCce-EEEeCchhheeeeeeccc
Confidence 57999999999999888887765 4444555 5678899998865 6999999888765 466777888888873333
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+..++ +.+.+.++++|.+.+.. ...++++.+.|...+..+..+..|-.+++.++ .|.+.+.| .+
T Consensus 377 -g~lla-----t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W-------~l 441 (775)
T KOG0319|consen 377 -GDLLA-----TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLW-------DL 441 (775)
T ss_pred -CcEEE-----EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEe-------cC
Confidence 23444 35677899999994421 14456778889999999999888877766544 45565543 33
Q ss_pred eeCCCceeee-------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCe
Q 013884 181 TTDGTHEGLV-------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 181 ~~~~~~~~~v-------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~ 250 (434)
.........+ ...|+..|++++.+|+.+.+| +|++|.+.+||++. +.....+ |+..+-++.|+|..+.
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA--T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA--TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEE--ecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence 2211111111 123578999999999999999 89999999999996 3333333 8899999999999999
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecc
Q 013884 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFD 325 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~--~~~~ 325 (434)
+++++ .|.+|+||.++++.++.++++|. +..++|-.+|..|++++. ||-+|||++... ++.. .|.+
T Consensus 520 laT~S---gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 520 LATCS---GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred eEecc---CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccc
Confidence 99998 45699999999999999999883 344999999999999999 999999999544 4443 4678
Q ss_pred cceeeEEEcCCCCCCCCc
Q 013884 326 KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~~~ 343 (434)
.+|.++=.|....+++..
T Consensus 591 rvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 591 RVWALSVSPLLDMFVTGG 608 (775)
T ss_pred eeEEEeecCccceeEecC
Confidence 999999999888666543
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-20 Score=171.79 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=210.3
Q ss_pred cceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|.+|+|||..- +.+|.+ ..|.||+..+...+.+|..-. ..+-++.|-.||++||.+. .|.|+|||..
T Consensus 29 vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk---~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFK---DVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhc---cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 78999999654 444444 679999988877666554332 4444889999999999995 5899999966
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
..........|...+....|+|.++.+++ +++.+..+++|++.+ ......++.|...+.+..|+|...++++
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~-----s~sDd~v~k~~d~s~---a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLV-----SGSDDKVVKYWDLST---AYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEE-----ecCCCceEEEEEcCC---cEEEEEecCCcceeEeeccccCCCeEEE
Confidence 53233344556677889999999555544 345667899999987 5556678889999999999999888766
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEE-Ec--
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL-EL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~-~~-- 234 (434)
. + +|+|...||...+.+ .....+++..||.++.+-|.|..++.+.| ..+++||+. +.+.. .+
T Consensus 171 t--G-------sYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 171 T--G-------SYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred e--c-------CCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhhc
Confidence 4 2 445555577665554 56778899999999999999999996433 389999996 44432 22
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
|...|+|+++..+++.|++++ +||.|++||+.+.+.+....-+ .+.+++.|||++.++.|-. ++.+-+=+
T Consensus 237 H~KtVTcL~l~s~~~rLlS~s---LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms------nGlv~~rr 307 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGS---LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS------NGLVSIRR 307 (487)
T ss_pred ccceEEEEEeecCCceEeecc---cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc------cceeeeeh
Confidence 789999999999999999999 8889999999999999988776 5566999999999999998 77665554
Q ss_pred e
Q 013884 314 H 314 (434)
Q Consensus 314 ~ 314 (434)
.
T Consensus 308 ~ 308 (487)
T KOG0310|consen 308 R 308 (487)
T ss_pred h
Confidence 3
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=9.1e-20 Score=181.81 Aligned_cols=262 Identities=14% Similarity=0.208 Sum_probs=195.6
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.++.||+||++++.+ .++.+++|+..... .......|...|.++.|||++. .++ +...+.+++||++.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~-----s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLL-----SGSDDKTLRIWDLK 233 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEE-----EecCCceEEEeecc
Confidence 567789999999999988 57799999985544 2222345677899999999954 444 24567899999994
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
.. ...+.+...|...+.++.|+|+|+. ++ +...|.+.+.| .+ ..+.-...--.+.++|..++|+++
T Consensus 234 ~~--~~~~~~l~gH~~~v~~~~f~p~g~~-i~--Sgs~D~tvriW-------d~--~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 234 DD--GRNLKTLKGHSTYVTSVAFSPDGNL-LV--SGSDDGTVRIW-------DV--RTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred CC--CeEEEEecCCCCceEEEEecCCCCE-EE--EecCCCcEEEE-------ec--cCCeEEEeeeccCCceEEEEECCC
Confidence 42 5778888899999999999999954 33 33355555533 33 222222222235789999999999
Q ss_pred CCEEEEEEccCCCeEEEEecccee---EEEc--CC-c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 207 GSEFAVVYGFMPASATIFNKKCRP---ILEL--GS-G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~~~---~~~~--~~-~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|+.|+. ++.|+.+++||+.... +..+ +. . +++++.|+|+|++|+++. .++.+.+||+..++.+..+..
T Consensus 300 ~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 300 GNLLVS--ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCEEEE--cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecc
Confidence 999994 5669999999997655 2333 22 2 689999999999999998 556999999999988887777
Q ss_pred CCce-----EEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--ee-cccceeeEEEcCCCCCCCC
Q 013884 280 ECSV-----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~~~~-----~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~--~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
|... ....+++|+++++++. |+.|++|+.. +..+.. .+ ...+..+.|+|....+.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~ 440 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASS 440 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence 6332 2445889999999999 9999999997 443333 24 5678889999988776665
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=2.8e-19 Score=190.81 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=196.1
Q ss_pred CCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC------ceeee-eecCCee
Q 013884 25 EKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK------GILYR-LRVPGVA 94 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~------~~~~~-~~~~~v~ 94 (434)
++.+++|+..+......+... ..|...+.+++|+|||+++|+++ ++.|+||+...... ..... .....+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 456778887765543333211 11346677899999999999885 67999999753110 00111 1234578
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEEEEecccccCceeec
Q 013884 95 AFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 95 ~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g 173 (434)
.+.|+|..+..++. .+.++.|++|++.+ .+.+.....|...+.++.|+| +|..|+.. ..|.+.+.
T Consensus 537 ~l~~~~~~~~~las-----~~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~i--- 602 (793)
T PLN00181 537 GICWNSYIKSQVAS-----SNFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKL--- 602 (793)
T ss_pred eEEeccCCCCEEEE-----EeCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEE---
Confidence 89998865566653 35578999999987 677777888889999999997 66654332 24444443
Q ss_pred ceeEEEEeeCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccce--eEEEc--CCcCeeEEEECCCC
Q 013884 174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKG 248 (434)
Q Consensus 174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws-pdg~~~av~~g~~~~~i~l~d~~~~--~~~~~--~~~~~~~i~~sP~g 248 (434)
|.+ ... .....+.....|.++.|+ ++|..|+ +|..++.|++||++.. .+..+ |...+.++.|+ ++
T Consensus 603 ----Wd~--~~~-~~~~~~~~~~~v~~v~~~~~~g~~la--tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 603 ----WSI--NQG-VSIGTIKTKANICCVQFPSESGRSLA--FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred ----EEC--CCC-cEEEEEecCCCeEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence 332 221 222233334678999995 5688877 5788999999999643 23333 77889999997 78
Q ss_pred CeEEEEecCCCCCeEEEEEccC------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee
Q 013884 249 KFLCLAGFGNLPGDMAFWDYVD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF 319 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~ 319 (434)
.+|++++ .+++|+|||+.. .+.+..+.+| .+..+.|+|+|.+|++++. |+.|+||+.... .+
T Consensus 673 ~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 673 STLVSSS---TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPV 743 (793)
T ss_pred CEEEEEE---CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCce
Confidence 8999998 456999999874 2567777776 3455999999999999999 999999997432 11
Q ss_pred --ee-------------eecccceeeEEEcCCCCCCCC
Q 013884 320 --FK-------------KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 320 --~~-------------~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+. .....+..+.|+|++..++..
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA 781 (793)
T ss_pred EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence 10 011348899999998877765
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.6e-20 Score=156.44 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=202.0
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
++..+..+.|.-||+|+++++ +.+|++|+............|-..|.+.+.+.++ ..++ +.|.+..|.+|++.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~-----s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFA-----SCGGDKAVQVWDVN 89 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccc-----cCCCCceEEEEEcc
Confidence 347888999999999999885 5699999998877666666777778888888873 3343 46788899999999
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECc
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wsp 205 (434)
+ ++.++....|.+.+..++||.+... +++...|.+.+.|. ...... +....++ ....|.++..+
T Consensus 90 T---Gkv~Rr~rgH~aqVNtV~fNeesSV---v~SgsfD~s~r~wD-------CRS~s~-ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 90 T---GKVDRRFRGHLAQVNTVRFNEESSV---VASGSFDSSVRLWD-------CRSRSF-EPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred c---CeeeeecccccceeeEEEecCcceE---EEeccccceeEEEE-------cccCCC-CccchhhhhcCceeEEEec-
Confidence 9 8999999999999999999998775 34455676666443 222221 2222222 24567777775
Q ss_pred CCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--
Q 013884 206 SGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-- 282 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-- 282 (434)
+.+++ +|+.|++++.||++ +....+.-..|+|++.||+||+.++.+. +++++++.|..+|+++..+.+|..
T Consensus 155 -~heIv--aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 155 -EHEIV--AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred -ccEEE--eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccce
Confidence 44444 79999999999997 4445566788999999999999999888 677999999999999999988833
Q ss_pred --eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCCCCCCCCc
Q 013884 283 --VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 283 --~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~~~~~~~~ 343 (434)
+.+.++....++++++. |+.+.+||+- +..+.+.... .+..+.++|.-+.++.+.
T Consensus 229 ykldc~l~qsdthV~sgSE------DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSE------DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred eeeeeeecccceeEEeccC------CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 34889999999999999 9999999984 4455444332 367888999888777763
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-19 Score=172.14 Aligned_cols=266 Identities=13% Similarity=0.121 Sum_probs=212.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|.++.|+|...++++.- ..++|.|||-++...+++|.-.. ..+++..|-+--+++++++|+ .|+||+.+.+
T Consensus 16 VKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEecccc
Confidence 78999999999999876 68999999999999999997654 677788888888899999765 9999999999
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
++......|.+-|++++.+|. .+++. +...+..|++|+.... -......+.|..-+.++.+||....- .+
T Consensus 88 ekV~~FeAH~DyIR~iavHPt-~P~vL-----tsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~nt--Fa 157 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPT-LPYVL-----TSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNT--FA 157 (794)
T ss_pred eeeEEeeccccceeeeeecCC-CCeEE-----ecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccc--ee
Confidence 887777788889999999999 56655 2456779999999763 35555667788888999999987654 34
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcCC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~~ 236 (434)
+...|.+.+.| .+ |...+..+++ |+..|+++.+-+-|..-.+|+|..|..+++||.. |.++.+-|.
T Consensus 158 S~sLDrTVKVW-------sl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 158 SASLDRTVKVW-------SL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred eeeccccEEEE-------Ec---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence 55578888754 33 3334444544 5789999999998887777799999999999986 334445588
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEE
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas 298 (434)
..++.++|+|.=-+|++|+ .||+|+||+..+.++..++.- ..+.+++-.++++.++.|.
T Consensus 228 ~Nvs~v~fhp~lpiiisgs---EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGS---EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ccceEEEecCCCcEEEEec---CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 9999999999999999998 789999999999876665543 3677777778777777766
No 56
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=6.1e-20 Score=186.18 Aligned_cols=240 Identities=16% Similarity=0.237 Sum_probs=174.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------Cc-----------EEEEEeecCcCCCCCCeeeecCCCcE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GE-----------AVYQLFQKNMTKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~-----------~~~~~~~~~~~~~~~~~~~~S~d~~~ 63 (434)
|.|+.|||||+|||+++ +|+.|.||+-.. |. ++..+..| ...+..+.||||+.+
T Consensus 72 v~CVR~S~dG~~lAsGS-----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H---~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGS-----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH---DSDVLDVNWSPDDSL 143 (942)
T ss_pred eeEEEECCCCCeEeecc-----CcceEEEeeecccCCcccccccccccccceeeEEEEEecC---CCccceeccCCCccE
Confidence 78999999999999988 899999998762 11 34455554 367779999999999
Q ss_pred EEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--
Q 013884 64 ACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-- 140 (434)
Q Consensus 64 la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-- 140 (434)
||++ .|++|.||+...|........|..-|..+.|.|- +.++|. .+.+.++++|++.++ +.....+..
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-Gky~AS-----qsdDrtikvwrt~dw---~i~k~It~pf~ 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-GKYFAS-----QSDDRTLKVWRTSDW---GIEKSITKPFE 214 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCc-cCeeee-----ecCCceEEEEEcccc---eeeEeeccchh
Confidence 9998 5789999999999776777788888999999998 677774 456679999998763 222222211
Q ss_pred ----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcC------C--
Q 013884 141 ----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS------G-- 207 (434)
Q Consensus 141 ----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspd------g-- 207 (434)
..-...+.|||||.+|+..... +. +...+-+++- +.....+ -+.|.+++..+.|+|. .
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~-----n~---~~~~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAV-----NG---GKSTIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhc-----cC---CcceeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 1233578999999998664322 11 2223344433 2222222 3457889999999972 1
Q ss_pred C------E-EEEEEccCCCeEEEEecc-ceeEE---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 208 S------E-FAVVYGFMPASATIFNKK-CRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 208 ~------~-~av~~g~~~~~i~l~d~~-~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
. + .++..|+.|+.+.||... .++++ ++-...|..++|||||..|++++ +||+|.+...+.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS---~DGtV~~i~Fee 356 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS---LDGTVALIHFEE 356 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe---cCCeEEEEEcch
Confidence 1 2 255579999999999874 44544 34578999999999999999998 778999998875
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.6e-21 Score=170.61 Aligned_cols=253 Identities=14% Similarity=0.228 Sum_probs=178.4
Q ss_pred CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013884 22 TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK 100 (434)
Q Consensus 22 ~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp 100 (434)
++.|+.|+|||+.+.+++.+|..+. +.+..+.++. +.++.++.|.+|+.|.+... ....+... .+..+.-+-
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTILGKSVYLGIDHHR 157 (433)
T ss_pred cccCceEEEEehhhhhhhheeeccc---CceeeEEecc-cceEEecCCcceeeeeccCC---cceeeecccccccccccc
Confidence 3489999999999999999998865 5666777776 77777777889999997663 22222222 222222221
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
. ..+|. ++| ..|.||+... ..|+.+.+.....+.++++||-.+.|+..+. .|.++. ||.+
T Consensus 158 ~----~~~Fa--TcG--e~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIv-------LyD~ 217 (433)
T KOG0268|consen 158 K----NSVFA--TCG--EQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIV-------LYDL 217 (433)
T ss_pred c----ccccc--ccC--ceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--cCCceE-------EEec
Confidence 1 11221 112 3789999987 7889988888888899999999998866543 333332 3443
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee--EEEcCCcCeeEEEECCCCCeEEEEec
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--ILELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~--~~~~~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
....- -..+.+ ...-+.++|+|.+ |.++++.+|..++.||++. .+ ++.-|...+.++.|||.|+-+++|++
T Consensus 218 R~~~P-l~KVi~--~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 218 RQASP-LKKVIL--TMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ccCCc-cceeee--eccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 32221 111112 4456789999955 4444799999999999973 22 33347788999999999999999997
Q ss_pred CCCCCeEEEEEccCCE---EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 257 GNLPGDMAFWDYVDGK---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~---~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
|. +|+||.++.+. ...+-.-..+.++.||-|.+|+++|+. |+.|++|.-.
T Consensus 293 Dk---sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~ 345 (433)
T KOG0268|consen 293 DK---SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK 345 (433)
T ss_pred cc---eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence 76 99999988663 223323347888999999999999999 9999999863
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-18 Score=154.85 Aligned_cols=261 Identities=15% Similarity=0.214 Sum_probs=188.3
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.++.|++||.+|+++. |++|++||..+... ...+... ++..+.|.-... .+++. +...+.+|+..++-
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~--~~i~s--Stk~d~tIryLsl~ 88 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSN--TVIHS--STKEDDTIRYLSLH 88 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCc--eEEEc--cCCCCCceEEEEee
Confidence 5677999999999999874 56999999987543 3333333 555555543211 22222 22455789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. ++-++-..+|+..+..+.-+|-++..+. +..|++.+ ||.+.+... ...+.+. .-..++|.|+
T Consensus 89 d---NkylRYF~GH~~~V~sL~~sP~~d~FlS---~S~D~tvr-------LWDlR~~~c-qg~l~~~---~~pi~AfDp~ 151 (311)
T KOG1446|consen 89 D---NKYLRYFPGHKKRVNSLSVSPKDDTFLS---SSLDKTVR-------LWDLRVKKC-QGLLNLS---GRPIAAFDPE 151 (311)
T ss_pred c---CceEEEcCCCCceEEEEEecCCCCeEEe---cccCCeEE-------eeEecCCCC-ceEEecC---CCcceeECCC
Confidence 7 8889999999999999999999876433 33666665 555543332 2223222 2235899999
Q ss_pred CCEEEEEEccCCCeEEEEecc---ceeEEEc--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884 207 GSEFAVVYGFMPASATIFNKK---CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~---~~~~~~~--~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
|-.||++.+. ..|+|||++ ..+..+| . ....+.|.|||||++|+++. ..+.+++.|.=+|..+.++.
T Consensus 152 GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 152 GLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred CcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEe
Confidence 9999975444 399999997 3344443 2 56778999999999999998 44699999999998888887
Q ss_pred CC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcCCCCCCCCch
Q 013884 279 AE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPVSPDKFGDIS 344 (434)
Q Consensus 279 ~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~~ 344 (434)
.+ -.....|+|||+++++++. |+.|.||++ +|..+... +.....++.|+|.-..+.++..
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 65 2235899999999999999 999999999 55554443 3457888889999877777654
No 59
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1.3e-18 Score=173.28 Aligned_cols=238 Identities=11% Similarity=0.158 Sum_probs=153.6
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-------------EEeecCcCCCCCCeeeecC-CCcEEEEec
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-------------QLFQKNMTKTTWPSIRFSS-DEAVACRMA 68 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-------------~~~~~~~~~~~~~~~~~S~-d~~~la~~~ 68 (434)
+...+++|+.-+++++ .+.....|+...|..+. .+.+ |...+.+++|+| |+++|++++
T Consensus 24 ~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 24 TPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred ccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEe
Confidence 4456778866666555 34445566554433221 1222 446788999999 888888885
Q ss_pred -CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884 69 -TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 69 -~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
|++|++|++..... ......|...|..+.|+|+.+..++. .+.++.|+||++.. ..
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS-----gs~DgtVrIWDl~t---g~-------- 159 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS-----AGADMVVNVWDVER---GK-------- 159 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE-----EeCCCEEEEEECCC---Ce--------
Confidence 67999999875321 11122334456666666654344432 24455666666643 10
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
.+ ..+ . .+...|.+++|+|+|+.|+ ++..|+.
T Consensus 160 --------------~~---------------------~~l---~--------~h~~~V~sla~spdG~lLa--tgs~Dg~ 191 (493)
T PTZ00421 160 --------------AV---------------------EVI---K--------CHSDQITSLEWNLDGSLLC--TTSKDKK 191 (493)
T ss_pred --------------EE---------------------EEE---c--------CCCCceEEEEEECCCCEEE--EecCCCE
Confidence 00 000 0 1256799999999999888 6788999
Q ss_pred EEEEeccc-eeEEEc--CCcC-eeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCE-EEEEeeCC---CceEEEECCCC
Q 013884 221 ATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGK-QLGTTRAE---CSVTSEWSPDG 291 (434)
Q Consensus 221 i~l~d~~~-~~~~~~--~~~~-~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~-~i~~~~~~---~~~~~~wspdg 291 (434)
|++||++. ..+..+ |.+. ...+.|+|++..|+++|+. ..++.|.|||+++.. .+.....+ .+..+.|+||+
T Consensus 192 IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 99999974 444444 4433 4568899999888887754 357899999998653 33333222 33347899999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 292 RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 292 ~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+|++++.. |+.|++|++...
T Consensus 272 ~~L~lggkg-----Dg~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKG-----EGNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeC-----CCeEEEEEeeCC
Confidence 999998743 999999999543
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.7e-19 Score=176.22 Aligned_cols=281 Identities=11% Similarity=0.100 Sum_probs=222.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|..|+|+|.--+++|.- -.+.|.+||-.=|.++..|..|. ..|+.+.|.|+.-++++++|+ .|+||+....
T Consensus 12 vKglsFHP~rPwILtsl-----HsG~IQlWDYRM~tli~rFdeHd---GpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSL-----HSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccceecCCCCCEEEEee-----cCceeeeehhhhhhHHhhhhccC---CccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 56899999999999876 67899999999999999998765 789999999999999999876 9999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|.+-|+.+.|++. -+.|. +...+.+|+||+..+ +..++..++|..-+.+..|+|....+ +
T Consensus 84 rclftL~GHlDYVRt~~FHhe-yPWIl-----SASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptEDlI---V 151 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHE-YPWIL-----SASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTEDLI---V 151 (1202)
T ss_pred eehhhhccccceeEEeeccCC-CceEE-----EccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccceE---E
Confidence 766667788899999999987 44443 235667999999999 89999999999999999999987753 3
Q ss_pred EecccccCceeecceeEEE------------------EeeCCCceeeee---cCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 161 QSDVDKTNQSYYGESKLNY------------------LTTDGTHEGLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~------------------l~~~~~~~~~v~---l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
+...|++.+.|+-.. |-. -+..|..+..+. -.|+..|+-++|+|.-..|+ +|..|.
T Consensus 152 SaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV--SG~DDR 228 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV--SGADDR 228 (1202)
T ss_pred EecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE--ecCCcc
Confidence 445788888774210 000 012222222222 23567889999999876666 799999
Q ss_pred eEEEEeccceeEEE-----cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CCCceEEEECCCCC
Q 013884 220 SATIFNKKCRPILE-----LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGR 292 (434)
Q Consensus 220 ~i~l~d~~~~~~~~-----~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~~~~~~~wspdg~ 292 (434)
.|++|........+ -|...|.++.|+|+-.+|++.| .|+.|+|||+...+.+.++. ....+.++-+|...
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns---EDksirVwDm~kRt~v~tfrrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS---EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN 305 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC---CCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence 99999875322222 2788999999999999999988 67799999999998888884 34667799999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec
Q 013884 293 YFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.|+.|- |+++.+|.++
T Consensus 306 LfAAgH-------DsGm~VFkle 321 (1202)
T KOG0292|consen 306 LFAAGH-------DSGMIVFKLE 321 (1202)
T ss_pred eeeeec-------CCceEEEEEc
Confidence 887664 8999999885
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=172.17 Aligned_cols=267 Identities=14% Similarity=0.232 Sum_probs=193.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|..+.|=++...|+|.+ .|..|++|++..++ .+.++.+.. ..+..+.|.+++++++.. .|+.+++|+++
T Consensus 178 v~~v~~l~~sdtlatgg-----~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGG-----SDRIIKLWNVLGEKSELISTLAGSL---GNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcc-----hhhhhhhhhcccchhhhhhhhhccC---CCcceeeecCCCceEEeecCCCceeeeecc
Confidence 44667777777888877 89999999987665 455555543 678899999999877766 56799999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-eEEEECCCCCeEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~ 157 (434)
+.........|.+.|.++.+.-+....+ ++..+.++++|++.. ..+.++.+.... ..+.-+ ..
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vV------sgs~DRtiK~WDl~k-----~~C~kt~l~~S~cnDI~~~-----~~ 313 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVV------SGSADRTIKLWDLQK-----AYCSKTVLPGSQCNDIVCS-----IS 313 (459)
T ss_pred chhhhhhhcccccceeeehhhcccccee------eccccchhhhhhhhh-----hheeccccccccccceEec-----ce
Confidence 8776677778888899887776532211 356678999999954 444444433221 122222 22
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--- 234 (434)
...+...|++.+.|.+. +. .....++-.|.|.++..+++|.++.. ...|..+.++|+++..+...
T Consensus 314 ~~~SgH~DkkvRfwD~R---------s~-~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIR---------SA-DKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred eeeecccccceEEEecc---------CC-ceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeec
Confidence 34556667666655432 22 23333333679999999999999985 46677999999987665432
Q ss_pred ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeC
Q 013884 235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 ----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
.....+.+.|||+|.|++.|+ .+|.|+||++.++++...+... .++.++|+|.|.+|++++. +
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk------~ 452 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK------Q 452 (459)
T ss_pred cccccccccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC------C
Confidence 234578899999999999998 7789999999999877666443 4778999999999999999 9
Q ss_pred CcEEEEe
Q 013884 307 NGIKIFH 313 (434)
Q Consensus 307 ~~i~iw~ 313 (434)
..+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999994
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.7e-19 Score=152.86 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=164.2
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEECCCCCeEEEEEEe
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
...+.+.+..++|+|..+..+| +.+.+..|+||+.... ..-.+. -.+|+..+..++|+|.|++|+..
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilA-----scg~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a--- 79 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILA-----SCGTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA--- 79 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEE-----eecCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCcEEEEe---
Confidence 3445567999999998545555 4677889999999741 122221 23578889999999999976543
Q ss_pred cccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------ceeEEEcC
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------CRPILELG 235 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~------~~~~~~~~ 235 (434)
..|.+.. ||. ...+.+++.-.|+ ++..|.+++||++|++|| +++.|..+.||... +..+.+-|
T Consensus 80 SFD~t~~-------Iw~-k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA--TCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 80 SFDATVV-------IWK-KEDGEFECVATLEGHENEVKCVAWSASGNYLA--TCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred eccceEE-------Eee-cCCCceeEEeeeeccccceeEEEEcCCCCEEE--EeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 2444443 332 1245556666665 588999999999999999 57778999999764 33444558
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
...+..+.|+|.-.+|+++++|| +|++|.-. +.+++.++.+|. +..++|+|.|..|++++. |++++
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv~ 220 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTVS 220 (312)
T ss_pred cccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------CcceE
Confidence 89999999999999999999887 99999766 348899998884 445999999999999999 99999
Q ss_pred EEeecCceeeeeecccceeeEEE
Q 013884 311 IFHHNGSLFFKKMFDKLFQAEWK 333 (434)
Q Consensus 311 iw~~~g~~~~~~~~~~~~~~~w~ 333 (434)
||.+- .-+...+...+|.+.|.
T Consensus 221 Iw~~~-~~~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 221 IWRLY-TDLSGMHSRALYDVPWD 242 (312)
T ss_pred eeeec-cCcchhcccceEeeeec
Confidence 99954 22233345679999998
No 63
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.6e-19 Score=176.66 Aligned_cols=255 Identities=16% Similarity=0.212 Sum_probs=181.2
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+...+.|.|||.+++++ .++.|++|+..+. +.......+.+.|.+++..- + .++. +...+.|.+|.+++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~-~f~~-----~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--N-HFLT-----GSEQNTVLRYKFPS 85 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--c-ceEE-----eeccceEEEeeCCC
Confidence 556689999999999888 5679999998775 33222222333444443332 2 2221 34567899999998
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg 207 (434)
...-..+.-|......++++.+|++++... .| ..+..++........+.-.++++|.++.++|++
T Consensus 86 ---~~~~~iL~Rftlp~r~~~v~g~g~~iaags---dD---------~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 86 ---GEEDTILARFTLPIRDLAVSGSGKMIAAGS---DD---------TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ---CCccceeeeeeccceEEEEecCCcEEEeec---Cc---------eeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 444444455666778889999999876642 11 134555555554555556679999999999999
Q ss_pred CEEEEEEccCCCeEEEEeccceeE-E---------EcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884 208 SEFAVVYGFMPASATIFNKKCRPI-L---------ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~~~-~---------~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
+.+|++++ +|+|++||+....+ + ++. ...++.++|+|+|..+++.+ .++.|.+|++.+++....
T Consensus 151 ~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 151 NFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceehee
Confidence 99997644 78999999863322 1 122 45667899999988777777 445999999999877665
Q ss_pred eeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013884 277 TRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK 339 (434)
Q Consensus 277 ~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~ 339 (434)
+... ..++++|||.|+|||+++. ||.|-|||++.... +.....+.+.+|.|.+..+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~------~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTL------DGQILVWNVDTHER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeecc------CCcEEEEecccchh-ccccceeEEEecCCCCCee
Confidence 5432 3566999999999999999 99999999987221 2334579999999988654
No 64
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.3e-20 Score=174.02 Aligned_cols=298 Identities=17% Similarity=0.215 Sum_probs=197.6
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE--ecCCeEEEEeCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR--MATNEIQFFDTT 78 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~--~~~~~i~v~~~~ 78 (434)
+|+||+..|.|.+|++++ .|++|+||.+.||.|++++... ..+.|++|+|.+..++. +.++.+.|-+..
T Consensus 402 ~Vr~iSvdp~G~wlasGs-----dDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS-----DDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eEEEEEecCCcceeeecC-----CCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 589999999999999988 8999999999999999998876 56889999998875544 444555555533
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-+..... ....+-... .| .....++.+-.|.-....+ ..-++..--+...+.++.|+.+|.+|+
T Consensus 473 ~G~~~e~-~~t~ell~~---~~-----------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 473 FGDRLEV-GPTKELLAS---AP-----------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred ccchhhh-cchhhhhhc---CC-----------CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 2211100 000000000 00 0011222344444332110 112344444556778999999999988
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc-
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~- 234 (434)
++... ...++.+ ||.|. ......++. ..|.|..+.|+|...+|+|++. ..|+|||+ ++..+..+
T Consensus 538 tV~~~---~~~~~Vl----iHQLS---K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 538 TVMPD---SGNKSVL----IHQLS---KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL 604 (733)
T ss_pred EeccC---CCcceEE----EEecc---cccccCchhhcCCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh
Confidence 76532 2333221 44442 223334553 3789999999999999998654 38999998 45555555
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
+...+.+++.+|.|..|+++++++ .|..+|++-. +...++..| .+..+++++.-..|++|+. |+++.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~ 675 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVI 675 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCC---eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEE
Confidence 345678999999999999999655 9999998743 555555555 5566999999999999999 99999
Q ss_pred EEee---c----Cceeeee-----ec----ccceeeEEEcCCCCCCCCch
Q 013884 311 IFHH---N----GSLFFKK-----MF----DKLFQAEWKPVSPDKFGDIS 344 (434)
Q Consensus 311 iw~~---~----g~~~~~~-----~~----~~~~~~~w~p~~~~~~~~~~ 344 (434)
|++- + .-++.-. +. --+..+.|+|..+.||+++.
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA 725 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA 725 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence 9983 1 1112111 11 13678889999999999864
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.9e-19 Score=172.60 Aligned_cols=239 Identities=16% Similarity=0.217 Sum_probs=190.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|+++.|+++|++|+.+. .++.|.|||+.+.+.++.+..+ |...|-+++|. +..+.++ .++.|.++|+...
T Consensus 220 vtSv~ws~~G~~LavG~-----~~g~v~iwD~~~~k~~~~~~~~--h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGT-----SDGTVQIWDVKEQKKTRTLRGS--HASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred eEEEEECCCCCEEEEee-----cCCeEEEEehhhccccccccCC--cCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 78999999999999988 8999999999999888888763 33778899998 6666666 4679999998765
Q ss_pred CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
+.... ...|.+.|..+.|+++ +..+| ++|.++.+.||+... ..++.....|++.+..+.|.|--..||..
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d-~~~lA-----SGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPD-GNQLA-----SGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred hhhhhhhhcccceeeeeEECCC-CCeec-----cCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEE
Confidence 43222 4566778999999999 56665 688999999999966 78888999999999999999987777766
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~ 236 (434)
..+..|...+.| ++..+ ...-.+.....|..+.|++..++|+...|+.+..|+||+.- ...+..+ |.
T Consensus 362 GGGs~D~~i~fw---------n~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 362 GGGSADRCIKFW---------NTNTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred cCCCcccEEEEE---------EcCCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 555556555443 33333 33344555789999999999999999999999999999874 3333343 88
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
..|..+++||||..|++|+ .|.+++||++-+.
T Consensus 432 ~RVl~la~SPdg~~i~t~a---~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGA---ADETLRFWNLFDE 463 (484)
T ss_pred ceeEEEEECCCCCEEEEec---ccCcEEeccccCC
Confidence 8999999999999999999 4459999997653
No 66
>PTZ00420 coronin; Provisional
Probab=99.84 E-value=4.6e-18 Score=170.49 Aligned_cols=257 Identities=10% Similarity=0.168 Sum_probs=159.7
Q ss_pred ecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc
Q 013884 7 CLRVGLIIQT-FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG 83 (434)
Q Consensus 7 fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~ 83 (434)
++..++|++. |....+..++.|+||++.....+..+.++ ...+.+++|+|+ +.+||+++ |++|+||++......
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH---~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH---TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC---CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 3445566654 44344556789999998777777777654 367779999996 78888874 679999998753210
Q ss_pred e--------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 84 I--------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 84 ~--------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
. ....|...| ..+.|+|++..
T Consensus 111 ~~~i~~p~~~L~gH~~~V---------------------------------------------------~sVaf~P~g~~ 139 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKI---------------------------------------------------SIIDWNPMNYY 139 (568)
T ss_pred ccccccceEEeecCCCcE---------------------------------------------------EEEEECCCCCe
Confidence 0 011122233 45555555554
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~ 234 (434)
+++.++ .|.+.+. |.+ ... .....+.+...|.+++|+|+|+.|+ ++..++.++|||++.. .+.++
T Consensus 140 iLaSgS--~DgtIrI-------WDl--~tg-~~~~~i~~~~~V~SlswspdG~lLa--t~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 140 IMCSSG--FDSFVNI-------WDI--ENE-KRAFQINMPKKLSSLKWNIKGNLLS--GTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEEe--CCCeEEE-------EEC--CCC-cEEEEEecCCcEEEEEECCCCCEEE--EEecCCEEEEEECCCCcEEEEE
Confidence 433221 2222221 111 111 1111222245789999999999887 4667899999999743 44444
Q ss_pred --CCcCeeE-----EEECCCCCeEEEEecCCC-CCeEEEEEccC-CEEEEEeeCC---CceEEEEC-CCCCEEEEEEcCC
Q 013884 235 --GSGPYNT-----VRWNPKGKFLCLAGFGNL-PGDMAFWDYVD-GKQLGTTRAE---CSVTSEWS-PDGRYFMTATTAP 301 (434)
Q Consensus 235 --~~~~~~~-----i~~sP~g~~l~~~~~~~~-~g~i~iwd~~~-~~~i~~~~~~---~~~~~~ws-pdg~~l~tas~~~ 301 (434)
|.+.+.+ ..|++++.+|+++|++.. .+.|.|||+++ .+.+...... .+....|. ++|.+|++|+.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG-- 283 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG-- 283 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC--
Confidence 5555433 235699999999887642 35899999985 4555544332 33334554 45889999988
Q ss_pred ceeeCCcEEEEeecCceeeee-e---cccceeeEEEcCCC
Q 013884 302 RLQIDNGIKIFHHNGSLFFKK-M---FDKLFQAEWKPVSP 337 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~~~~~~-~---~~~~~~~~w~p~~~ 337 (434)
|+.|++|++....++.. . ......+.|.|.-.
T Consensus 284 ----D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 284 ----DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ----CCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 99999999965433332 1 13456777777543
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1.1e-18 Score=154.12 Aligned_cols=265 Identities=14% Similarity=0.136 Sum_probs=177.4
Q ss_pred cceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|.+|+|||...+|+ ..+ .|++|++|+++. |..+..-... +...+.+++||.||..++.+ .|+++++||+.
T Consensus 30 IS~l~FSP~~~~~~~A~S-----WD~tVR~wevq~~g~~~~ka~~~--~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGS-----WDGTVRIWEVQNSGQLVPKAQQS--HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred hheeEeccccCceEEecc-----cCCceEEEEEecCCcccchhhhc--cCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 78999999655555 444 899999999976 5544422222 34778899999999877776 68899999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+.+. .....|...|+.+.|-+.....+.+ ++..+.+++.||... ..++.+..+-. .++.+. - -.-+++
T Consensus 103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~----TGSWDKTlKfWD~R~---~~pv~t~~LPe-RvYa~D--v-~~pm~v 170 (347)
T KOG0647|consen 103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLV----TGSWDKTLKFWDTRS---SNPVATLQLPE-RVYAAD--V-LYPMAV 170 (347)
T ss_pred CCCe-eeeeecccceeEEEEecCCCcceeE----ecccccceeecccCC---CCeeeeeeccc-eeeehh--c-cCceeE
Confidence 8653 5566778889999998874422221 467788999999987 67777665432 111110 0 011233
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee----EEE
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP----ILE 233 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~----~~~ 233 (434)
++.. ++... +|.|+-.-....++....+-.+.+++..+|...+++ |+..|++.+..+.. ++ .+.
T Consensus 171 Vata--~r~i~-------vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 171 VATA--ERHIA-------VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred EEec--CCcEE-------EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEE
Confidence 3221 11211 222211111111222222567889999999888875 78888998887643 22 222
Q ss_pred cCC---------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884 234 LGS---------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 234 ~~~---------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
.|. -.||+|+|+|.-..|+++| .||++.+||.+....+...+.+ .++++.|+.+|.+++.|..
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 232 2578999999999999999 6789999998877666654443 6677999999999999887
No 68
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.4e-19 Score=159.50 Aligned_cols=262 Identities=15% Similarity=0.182 Sum_probs=193.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+..+-|.|+.-.+++++ +.+|++||..+.+.....+.|...+.+++++..+ ..++.. ..+-.+.+|+....
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tc-----SsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATC-----SSDLSAKLWDFDTF 182 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEec-----CCccchhheeHHHH
Confidence 4555788999999999885 5699999999887766677888889999999874 444422 22334899998764
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~ 208 (434)
.+.+.....+...+.++.+-|.|.+|+. ...|.+.+.|.-.++ |-+.... .+..-|+-++-+.||.
T Consensus 183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS---~srD~tik~We~~tg-~cv~t~~--------~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 183 --FRCIKSLIGHEHGVSSVFFLPLGDHILS---CSRDNTIKAWECDTG-YCVKTFP--------GHSEWVRMVRVNQDGT 248 (406)
T ss_pred --HHHHHHhcCcccceeeEEEEecCCeeee---cccccceeEEecccc-eeEEecc--------CchHhEEEEEecCCee
Confidence 4566677778888889999999988644 447777776643322 2222222 2355788999999999
Q ss_pred EEEEEEccCCCeEEEEecc---ceeEEEcCCcCeeEEEECCC---------------CCeEEEEecCCCCCeEEEEEccC
Q 013884 209 EFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~---~~~~~~~~~~~~~~i~~sP~---------------g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.|| +++.+.++++|-+. +..+...|..++.+++|.|. |+++.+++ -|++|++||+.+
T Consensus 249 i~A--s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDktIk~wdv~t 323 (406)
T KOG0295|consen 249 IIA--SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDKTIKIWDVST 323 (406)
T ss_pred EEE--ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccceEEEEeccC
Confidence 988 68888999999765 34566668899999999874 24666666 457999999999
Q ss_pred CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeeccc--ceeeEEEcCCCCCCCC
Q 013884 271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDK--LFQAEWKPVSPDKFGD 342 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~--~~~~~w~p~~~~~~~~ 342 (434)
+.++.++.+| .+..++|+|.|+||+++.. |++++|||+.. +++...+..+ +..+.+.-..+++.+.
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence 9999999988 5556999999999999999 99999999954 4555544433 3455555554444443
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=2.2e-19 Score=168.43 Aligned_cols=274 Identities=16% Similarity=0.220 Sum_probs=187.1
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc--eeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG--ILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY 123 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~--~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~ 123 (434)
..|.++++-|.|..|++++ |.+|++||....... ....+ ....|+++.|||.++.+++++-. +..+|+
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------aqakl~ 241 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------AQAKLL 241 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------cceeEE
Confidence 5677899999999999985 779999998765421 11111 12368999999997777665421 244555
Q ss_pred EcCCCCC------CC---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec--
Q 013884 124 ACGKDLQ------SQ---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-- 192 (434)
Q Consensus 124 ~~~~~~~------~~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-- 192 (434)
+-..+.. .+ .+.+...|.+...+-.|+|+.+...+.++ .|.+.+.|......-.+ +...+-
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~------qVik~k~~ 313 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQL------QVIKTKPA 313 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--CCCcEEEEecCCchhhe------eEEeeccC
Confidence 5433110 11 11223356667778899999887655443 45566555433221111 111111
Q ss_pred -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCc--CeeEEEECCCCCeEEEEecCCCCCeE
Q 013884 193 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 193 -~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
.+.-++..++|+|||+.|| +|..||.|.+|+.... .+.+.|.. .+++|.||+||++|++-|+|+ .+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iA--agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tL 388 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIA--AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TL 388 (641)
T ss_pred CCcccCceeeecCCCcchhh--hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ce
Confidence 1244788999999999988 6889999999997432 23344544 899999999999999999665 99
Q ss_pred EEEEccCC-EEEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc--cceeeEEEcC
Q 013884 264 AFWDYVDG-KQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPV 335 (434)
Q Consensus 264 ~iwd~~~~-~~i~~~~~----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~--~~~~~~w~p~ 335 (434)
++||++.. +.+....+ ...+.|+||||.+.|+||++.|+-.--+.+.+||-. =..+++..+. .+-.+.|+|.
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 99999876 44444333 255669999999999999999887667778888863 3566766554 6778899998
Q ss_pred CCCCCCC
Q 013884 336 SPDKFGD 342 (434)
Q Consensus 336 ~~~~~~~ 342 (434)
-.-+|..
T Consensus 469 LNQi~~g 475 (641)
T KOG0772|consen 469 LNQIFAG 475 (641)
T ss_pred hhheeee
Confidence 7776654
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.83 E-value=1.4e-19 Score=155.74 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=201.2
Q ss_pred cceEEec---CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884 2 LLLLTCL---RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fS---P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|..|+|| |+|-||++.+ .|++=.+-+-.||.-+.+|.++.. ..| ......|-...|++. |-+-+|||.
T Consensus 17 vvdl~~s~itp~g~flisa~-----kd~~pmlr~g~tgdwigtfeghkg--avw-~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISAS-----KDGKPMLRNGDTGDWIGTFEGHKG--AVW-SATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred eeEEeccCCCCCceEEEEec-----cCCCchhccCCCCCcEEeeeccCc--cee-eeecCchhhhhhhhcccchhhhhhh
Confidence 4567887 6899999999 677777777789999999998764 556 445555666667765 449999997
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-...... .-.|..-|+.++|+.+...++ +++....+|||++... ..+......+...+..+.|-...+.++
T Consensus 89 ~tgdelh-sf~hkhivk~~af~~ds~~ll------tgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 89 VTGDELH-SFEHKHIVKAVAFSQDSNYLL------TGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCIL 159 (334)
T ss_pred hhhhhhh-hhhhhheeeeEEecccchhhh------ccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEE
Confidence 6644221 112233478899998854444 4677778999998663 556666677788888888877767654
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-C
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-G 235 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~ 235 (434)
.. ..|++.+. |... .+ .....|..+.+|.++..++||+.+.+.+|+ .|.+||.+ ...+.++ -
T Consensus 160 SS---add~tVRL-------WD~r--Tg-t~v~sL~~~s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 160 SS---ADDKTVRL-------WDHR--TG-TEVQSLEFNSPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred ee---ccCCceEE-------EEec--cC-cEEEEEecCCCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccC
Confidence 43 24556553 3332 22 222334447899999999999999987765 89999986 4555555 3
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
...|++...+|+..+++.|| .++.++.||..+++.+..+ .+| .+-++.|||||+..++++. |++|+||
T Consensus 224 P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE------DGTirlW 294 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE------DGTIRLW 294 (334)
T ss_pred ccccccccccCCCceEEecC---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC------CceEEEE
Confidence 56788999999998888887 6789999999999988886 444 4455999999999999999 9999999
Q ss_pred eecC
Q 013884 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
..+-
T Consensus 295 Qt~~ 298 (334)
T KOG0278|consen 295 QTTP 298 (334)
T ss_pred EecC
Confidence 9754
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.83 E-value=3.9e-18 Score=154.07 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=199.9
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
+.+|..|. ..+-++..+|+..++|+++ |+.-++|+..+.........|.+.|..+.||-+ +.++| +++..
T Consensus 57 ~~tF~~H~---~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-gtlLA-----TGdms 127 (399)
T KOG0296|consen 57 LVTFDKHT---DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-GTLLA-----TGDMS 127 (399)
T ss_pred eeehhhcC---CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-ceEEE-----ecCCC
Confidence 45665543 6666899999999999985 679999999987766667778889999999998 56676 57888
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCC
Q 013884 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 197 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~ 197 (434)
+.|+||...+ +........--.+..-|+|+|.+..|+..+ .| | .+|.+.+.....+.+--.+..+
T Consensus 128 G~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~---~D-------G--svWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 128 GKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TD-------G--SVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeec---CC-------C--cEEEEECCCcceeeEecCCCCC
Confidence 9999999987 555544444456777899999877665432 11 2 2555555554466666667889
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcC-----------------------------------------
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG----------------------------------------- 235 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~----------------------------------------- 235 (434)
+.+=.|.|||++++ +++.|++|++||.+ +.+++.+.
T Consensus 193 ct~G~f~pdGKr~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 193 CTCGEFIPDGKRIL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccccccCCCceEE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 99999999999999 67889999999985 44443321
Q ss_pred ------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013884 236 ------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 236 ------------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~r 302 (434)
...+.++.+.|...-|-++..|.++|+|.|||+...+..+.+++. .++.+.|-+ ..+|++++.
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~--- 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA--- 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc---
Confidence 001122333343332222223338899999999988777777765 667799999 789999999
Q ss_pred eeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013884 303 LQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 303 l~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
|+.|++||. +|++++.. +...++++...|+...+++.
T Consensus 347 ---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 347 ---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 999999998 78887665 66789999999998777665
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=8.5e-18 Score=152.59 Aligned_cols=269 Identities=14% Similarity=0.239 Sum_probs=191.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCc--EEEEe-cCCeEEEEeCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEA--VACRM-ATNEIQFFDTT 78 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~--~la~~-~~~~i~v~~~~ 78 (434)
.+|.-. +++++|.+ .|+.++||| ..|+++.++.++. ..+..+.|- +|.. .|+++ .|.++++|..+
T Consensus 109 Ssv~~~--~~~Iltgs-----YDg~~riWd-~~Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 109 SSVKGA--SKWILTGS-----YDGTSRIWD-LKGKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred hhhccc--CceEEEee-----cCCeeEEEe-cCCceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 444444 78999988 899999999 5688888888764 566666663 3433 45555 56699999987
Q ss_pred CCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----------------------CCC
Q 013884 79 DFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----------------------QSQ 132 (434)
Q Consensus 79 ~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----------------------~~~ 132 (434)
..+.. ...+.|...|.+++..+++ ..++ ++..+..+.||+.+... .+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~-----SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSG-TRFC-----SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCC-CeEE-----eecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 65432 2234667789999888874 3333 34566788888843210 255
Q ss_pred ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884 133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av 212 (434)
++..+..|...+.++.|++.+. +.+..-|.+.+.| .+...+.. ..+..+..++++..+|..+.++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~~v----~yS~SwDHTIk~W-------Dletg~~~---~~~~~~ksl~~i~~~~~~~Ll~- 316 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDATV----IYSVSWDHTIKVW-------DLETGGLK---STLTTNKSLNCISYSPLSKLLA- 316 (423)
T ss_pred ceEEecccccceeeEEEcCCCc----eEeecccceEEEE-------Eeecccce---eeeecCcceeEeecccccceee-
Confidence 6777888999999999999433 2334467777754 44433332 2222367899999999888877
Q ss_pred EEccCCCeEEEEeccce----eEEEc--CCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCCE-EEEEeeCC--Cc
Q 013884 213 VYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CS 282 (434)
Q Consensus 213 ~~g~~~~~i~l~d~~~~----~~~~~--~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~ 282 (434)
+|+.|..+++||-+.. ..++| |..-|.++.|+|...++ ++++ .|+++++||+++-+ .+..+.+| .+
T Consensus 317 -~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 317 -SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred -ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCCCcceeeccCCceE
Confidence 7899999999998632 23334 78899999999988754 5556 44699999998776 77777777 55
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.++.|. +|.+|++|+. |++++|+..
T Consensus 393 l~vdW~-~~~~IvSGGa------D~~l~i~~~ 417 (423)
T KOG0313|consen 393 LSVDWN-EGGLIVSGGA------DNKLRIFKG 417 (423)
T ss_pred EEEecc-CCceEEeccC------cceEEEecc
Confidence 668998 5679999999 999999875
No 73
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.82 E-value=2.6e-18 Score=151.53 Aligned_cols=227 Identities=14% Similarity=0.206 Sum_probs=165.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~ 79 (434)
|-.+.|.+||+.|++++ .|++|+.||+++|++++.+..+. .-+.++.=+.-|..|+. ++ |+++++||+..
T Consensus 93 VM~l~~~~d~s~i~S~g-----tDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCG-----TDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eEeeeeccCCCEEEEec-----CCceEEEEecccceeeehhcccc---ceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 56789999999999999 89999999999999999887654 55556664445655554 44 46999999986
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.+......-.. .+.++.|...++..+. ++.++.|++|++... ++.
T Consensus 165 k~~~~t~~~ky-qltAv~f~d~s~qv~s------ggIdn~ikvWd~r~~-----------------------d~~----- 209 (338)
T KOG0265|consen 165 KEAIKTFENKY-QLTAVGFKDTSDQVIS------GGIDNDIKVWDLRKN-----------------------DGL----- 209 (338)
T ss_pred cchhhccccce-eEEEEEecccccceee------ccccCceeeeccccC-----------------------cce-----
Confidence 44321111111 3677778776554443 567778888887541 111
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----eeEEEc
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILEL 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-----~~~~~~ 234 (434)
|.+ .++ ..+|..+..+|+|..+. +.+||.++++||.+. ..+.-+
T Consensus 210 ------------------~~l---sGh--------~DtIt~lsls~~gs~ll--snsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 210 ------------------YTL---SGH--------ADTITGLSLSRYGSFLL--SNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred ------------------EEe---ecc--------cCceeeEEeccCCCccc--cccccceEEEEEecccCCCCceEEEe
Confidence 221 112 56888999999998888 789999999999861 223322
Q ss_pred ----CCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884 235 ----GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 ----~~~~--~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
|... ...+.|||+++++-.++.+ ..+++||......+..+.+| .+..++|+|....|+++++ |
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~d---r~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s------d 329 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSAD---RFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS------D 329 (338)
T ss_pred ecchhhhhhhcceeeccCCCCcccccccc---ceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc------C
Confidence 2222 3457899999999888744 59999999999999999988 4556999999999999999 8
Q ss_pred CcEEE
Q 013884 307 NGIKI 311 (434)
Q Consensus 307 ~~i~i 311 (434)
.+|.+
T Consensus 330 k~i~l 334 (338)
T KOG0265|consen 330 KTIYL 334 (338)
T ss_pred ceeEe
Confidence 88865
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-18 Score=149.40 Aligned_cols=282 Identities=12% Similarity=0.143 Sum_probs=194.8
Q ss_pred ceEEecCC-CcEEEE--EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEEEeC
Q 013884 3 LLLTCLRV-GLIIQT--FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQFFDT 77 (434)
Q Consensus 3 ~~l~fSP~-g~~L~t--~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v~~~ 77 (434)
.++.|||- .++|+. .+-+.-...+.+.|-++..+.-+..+..-. ..+..-.++||++ ...++..+||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 47899994 344443 333433456899999986554444433222 1144448899984 34555668999999997
Q ss_pred CCCCC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 78 TDFPK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 78 ~~~~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
..... ....+-|...|.++.|++-....+.. ..-+++|+||+... ...+.+...+..-+.+..|+|.-..+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lt-----sSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLT-----SSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEe-----eccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCe
Confidence 65432 23345566679999999875444432 36788999999876 77788888888889999999987777
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~ 234 (434)
+..+++ |.+ -.||.++..|.. ..++. +...|.++.|+.-...+.+ +|..|+.|+.||++. .++.++
T Consensus 163 fas~Sg--d~~-------l~lwdvr~~gk~-~~i~a-h~~Eil~cdw~ky~~~vl~-Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 163 FASASG--DGT-------LRLWDVRSPGKF-MSIEA-HNSEILCCDWSKYNHNVLA-TGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred EEEccC--Cce-------EEEEEecCCCce-eEEEe-ccceeEeecccccCCcEEE-ecCCCceEEEEehhhccccceee
Confidence 555543 333 346666666543 22333 3578999999986555554 799999999999973 455555
Q ss_pred --CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCC
Q 013884 235 --GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~~rl~~D~ 307 (434)
|.-.|..+.|||... .|+++++|- +++|||.... ..+.+..+| -+..+.||+- +.++|+.+- |.
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW------De 301 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDM---TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW------DE 301 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccc---eEEecccccchhhhhhhhccceEEeccccccccCceeeeccc------cc
Confidence 677899999999875 788888665 9999998754 345555555 3334899974 556777776 99
Q ss_pred cEEEEee
Q 013884 308 GIKIFHH 314 (434)
Q Consensus 308 ~i~iw~~ 314 (434)
.++||+-
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999983
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=7.9e-18 Score=164.45 Aligned_cols=298 Identities=13% Similarity=0.172 Sum_probs=221.9
Q ss_pred CCCcEEEEEcCC-CcE------EEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEE
Q 013884 24 QEKNVILWKTET-GEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~-g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~ 96 (434)
.+.++.++.++. +.. +..+.- ..|+..++.+++|.|...++++.+++|.||+...... ..++...-+-..
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~~~y~l~~ 418 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTITCGYILAS 418 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCCCcEEEEEccCcce--eEEeccccEEEE
Confidence 357788887754 211 222221 2256889999999999999999999999999987553 345555566677
Q ss_pred EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013884 97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK 176 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~ 176 (434)
.|-|+ +.++.+ +...|.+.+|++.+ ...+-++..|.+.+-.+.-+||++..+. ...|++.+.|.-+
T Consensus 419 ~Fvpg-d~~Iv~-----G~k~Gel~vfdlaS---~~l~Eti~AHdgaIWsi~~~pD~~g~vT---~saDktVkfWdf~-- 484 (888)
T KOG0306|consen 419 KFVPG-DRYIVL-----GTKNGELQVFDLAS---ASLVETIRAHDGAIWSISLSPDNKGFVT---GSADKTVKFWDFK-- 484 (888)
T ss_pred EecCC-CceEEE-----eccCCceEEEEeeh---hhhhhhhhccccceeeeeecCCCCceEE---ecCCcEEEEEeEE--
Confidence 78887 444432 45567899999987 6666677788999999999999998544 3478999887521
Q ss_pred EEEEeeCCCceeeee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCC
Q 013884 177 LNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPK 247 (434)
Q Consensus 177 l~~l~~~~~~~~~v~------l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~ 247 (434)
+..+..|.....+. |+-+..|.++.+||||+++|+ +--|.++.+|-++.-..+ ++ |.-||.|+..|||
T Consensus 485 -l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV--sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 485 -LVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV--SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred -EEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE--EeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence 11222333222222 333678999999999999996 778899999987654433 33 7899999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee--eee
Q 013884 248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKK 322 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~--~~~ 322 (434)
++++++++.| .+|++|-++=|.|-..+-+| .++.+.|-|+...|.+++. |+.|+-||-..- ++ ...
T Consensus 562 SklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK------D~kvKqWDg~kFe~iq~L~~ 632 (888)
T KOG0306|consen 562 SKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK------DGKVKQWDGEKFEEIQKLDG 632 (888)
T ss_pred cCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC------cceEEeechhhhhhheeecc
Confidence 9999999955 49999999988888888776 5678999999999999999 999999985432 22 233
Q ss_pred ecccceeeEEEcCCCCCCCCch-hhhhcc
Q 013884 323 MFDKLFQAEWKPVSPDKFGDIS-ELIKSV 350 (434)
Q Consensus 323 ~~~~~~~~~w~p~~~~~~~~~~-~~~~~~ 350 (434)
+..++|+++-.|.+..+++... +.+..|
T Consensus 633 H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred chheeeeeEEcCCCCeEEeccCCceeEee
Confidence 6679999999999999888753 334444
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=3.9e-19 Score=165.77 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=165.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~ 79 (434)
|+.++||.+|+.++|++ .|+.|++||++||+++..|... ....|+.|.||+ +.++.+ .++.|+-||+.+
T Consensus 261 Vrd~~~s~~g~~fLS~s-----fD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSAS-----FDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred hhhhhccccCCeeeeee-----cceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 77899999999999999 8999999999999999998765 445589999998 555444 678999999998
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
........-++..|..+.|-+++...|. ...+..++||+......-+.+.....|.. -++.-+|.|.+++.-
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFis------sSDdks~riWe~~~~v~ik~i~~~~~hsm--P~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFIS------SSDDKSVRIWENRIPVPIKNIADPEMHTM--PCLTLHPNGKWFAAQ 403 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEee------eccCccEEEEEcCCCccchhhcchhhccC--cceecCCCCCeehhh
Confidence 7755556677888999999998655553 23456899999876222222222222322 356678888876442
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CC
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GS 236 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~ 236 (434)
+ .|.....|. ....|.+.....++.. ...|.-..+.|||||+.++ +|+.+|++.+||.+...+ ..+ |.
T Consensus 404 --s-~dN~i~ifs-~~~~~r~nkkK~feGh---~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 404 --S-MDNYIAIFS-TVPPFRLNKKKRFEGH---SVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred --c-cCceEEEEe-cccccccCHhhhhcce---eccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccccCC
Confidence 1 222222111 1111211111111000 0146667899999999999 899999999999975433 333 78
Q ss_pred cCeeEEEECCCCC-eEEEEecCCCCCeEEEEE
Q 013884 237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 237 ~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd 267 (434)
+++..+.|+|... .+|+++ .+|.|++||
T Consensus 475 ~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCG---WDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecc---cCceeEecC
Confidence 8999999999875 677777 668999996
No 77
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.81 E-value=1.3e-19 Score=162.52 Aligned_cols=246 Identities=13% Similarity=0.214 Sum_probs=174.3
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
.|.+|+|||..+-++++.+.++. ..+.|++| |.+.+++++ |.+|+|||.++.+.....-.|.+.|-.+.|+.+
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng- 288 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHT---GSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG- 288 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCC---CcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-
Confidence 78999999999999988888764 77778887 788999884 569999999998766556667788888888853
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
.++. ...+..+.+|++.. ...+ ..+-+|.+.+..+.|+.. + + ++...|.+.+.|...+ .++
T Consensus 289 -~mvt------cSkDrsiaVWdm~s---ps~it~rrVLvGHrAaVNvVdfd~k--y-I--VsASgDRTikvW~~st-~ef 352 (499)
T KOG0281|consen 289 -YMVT------CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDFDDK--Y-I--VSASGDRTIKVWSTST-CEF 352 (499)
T ss_pred -EEEE------ecCCceeEEEeccC---chHHHHHHHHhhhhhheeeeccccc--e-E--EEecCCceEEEEeccc-eee
Confidence 3332 24567899999977 3333 234567777777777653 3 2 3344678888775443 344
Q ss_pred EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE---EcCCcCeeEEEECCCCCeEEEEec
Q 013884 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
+.+..++ ...|.++++. |+ |+| +|+.|.+|++||+.+.... +-|..-+.+|.|. .+.|++|+
T Consensus 353 vRtl~gH--------kRGIAClQYr--~r-lvV-SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa- 417 (499)
T KOG0281|consen 353 VRTLNGH--------KRGIACLQYR--DR-LVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA- 417 (499)
T ss_pred ehhhhcc--------cccceehhcc--Ce-EEE-ecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-
Confidence 4433332 4566677763 44 444 7999999999999865432 3477889999995 57888898
Q ss_pred CCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 257 GNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+|+|++||+..+. ++.++..| .+..+.| |...|++++. |.+|-|||+..
T Consensus 418 --YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH------ddtILiWdFl~ 478 (499)
T KOG0281|consen 418 --YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH------DDTILIWDFLN 478 (499)
T ss_pred --ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC------CCeEEEEEcCC
Confidence 55799999998653 22222223 3333555 6678898898 99999999844
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.4e-16 Score=133.93 Aligned_cols=289 Identities=15% Similarity=0.198 Sum_probs=189.1
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEE------cCCCcE------EEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWK------TETGEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA 68 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd------~~~g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~ 68 (434)
.|++++|.|.|...+..+ ..++++|-- +..+.. .-.+.....|+..+-|.+|||+|.++|+++
T Consensus 34 airav~fhp~g~lyavgs-----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGS-----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred heeeEEecCCCceEEecc-----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 378999999999999877 556666542 212211 112333333567777999999999999997
Q ss_pred C-CeEEEEeCCCCCC---c--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 69 T-NEIQFFDTTDFPK---G--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 69 ~-~~i~v~~~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+ .+|++...+.... + .....|...|++++|--+...--++.... +..+..|.+-+... ++.....+.|..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~---g~~~~a~sghtg 184 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGR---GQGFHALSGHTG 184 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCC---CCcceeecCCcc
Confidence 5 5888876543221 1 12344555688888765432211222211 11223445555555 788888888888
Q ss_pred ceeEE-EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 143 STVQL-NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 143 ~~~~~-~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
.+..+ .||. - + +++..-|++.+.|.-..+... .+.+..-..--++ ...|.+++..|.|+.++ +|..|...
T Consensus 185 hilalyswn~--~-m--~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~gle-ssavaav~vdpsgrll~--sg~~dssc 255 (350)
T KOG0641|consen 185 HILALYSWNG--A-M--FASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLE-SSAVAAVAVDPSGRLLA--SGHADSSC 255 (350)
T ss_pred cEEEEEEecC--c-E--EEccCCCceEEEEeeecccee-eeccCcccCCCcc-cceeEEEEECCCcceee--eccCCCce
Confidence 87765 5763 2 2 455667888876542211110 0000000000011 35688999999999998 79999999
Q ss_pred EEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---E--EEEEeeCC-CceEEEECCCCC
Q 013884 222 TIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---K--QLGTTRAE-CSVTSEWSPDGR 292 (434)
Q Consensus 222 ~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~--~i~~~~~~-~~~~~~wspdg~ 292 (434)
.+||+++ ..+..| |...+.++.|||...|++++++++ .|++-|++.- + .+...++. .++.+.|.|..-
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc---eEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence 9999985 456666 578899999999999999999877 9999998732 1 12222222 567799999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeecC
Q 013884 293 YFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.|++.+. |.++.+|-+.|
T Consensus 333 sfisssa------dkt~tlwa~~~ 350 (350)
T KOG0641|consen 333 SFISSSA------DKTATLWALNG 350 (350)
T ss_pred eeeeccC------cceEEEeccCC
Confidence 9999988 99999998865
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4e-18 Score=151.33 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=166.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~ 78 (434)
|++|+. +|.|+|+++ .|.+|+|||+.+...+..+..+ +..+++++|.++-. .|+++ .|+.|.+|+..
T Consensus 46 itavAV--s~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 46 ITALAV--SGPYVASGS-----SDETIHIYDMRKRKQLGILLSH---AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred eeEEEe--cceeEeccC-----CCCcEEEEeccchhhhcceecc---ccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456666 688999888 8999999999998888887765 37888999999874 56555 56899999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.+......+.|...|+.++++|.+...+++ +.+..+++|++-. |+.-.+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsV------g~D~~lr~WNLV~-------------------------Gr~a~v 164 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSV------GGDQVLRTWNLVR-------------------------GRVAFV 164 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEE------cCCceeeeehhhc-------------------------Ccccee
Confidence 987766677777789999999986544544 4566888998855 121111
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCc-
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG- 237 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~- 237 (434)
+ +|. ...+.+.|+|.|.+|+++. ..+|-+|.+....++..-..
T Consensus 165 ~-------------------------------~L~--~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 165 L-------------------------------NLK--NKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred e-------------------------------ccC--CcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhcc
Confidence 1 011 1123388999999999753 34888998765544433222
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEE--EECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~--~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
.+.++.|- ++..|++|+ .++.|.+||.++......+.+| .+-.+ --.|++.+|+|+++ ||.|+||
T Consensus 209 ~r~l~~~~l-~~~~L~vG~---d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~I~vW 278 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGG---DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGFIKVW 278 (362)
T ss_pred ccceeeeec-CCceEEEec---CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------CceEEEE
Confidence 24455553 456777787 4579999999998888888888 33333 34789999999999 9999999
Q ss_pred eecCc
Q 013884 313 HHNGS 317 (434)
Q Consensus 313 ~~~g~ 317 (434)
|++-.
T Consensus 279 d~~~~ 283 (362)
T KOG0294|consen 279 DIDME 283 (362)
T ss_pred Ecccc
Confidence 99665
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=9.3e-19 Score=160.29 Aligned_cols=260 Identities=11% Similarity=0.111 Sum_probs=193.9
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
...+..+.|-++...|++++ |..|++|++.... ..........+|.++.+.+++...|| .+.+..+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA------as~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA------ASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe------ecCCCceeeeec
Confidence 35667889999988888874 5699999986533 11223334567999999988655555 255678999999
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp 205 (434)
.+ .+...++++|...++.+.+...... +.+...|.+.+.|. +. .. .|.-++-....+.+|+-+
T Consensus 249 d~---~r~~~TLsGHtdkVt~ak~~~~~~~---vVsgs~DRtiK~WD-------l~--k~-~C~kt~l~~S~cnDI~~~- 311 (459)
T KOG0288|consen 249 DS---LRLRHTLSGHTDKVTAAKFKLSHSR---VVSGSADRTIKLWD-------LQ--KA-YCSKTVLPGSQCNDIVCS- 311 (459)
T ss_pred cc---hhhhhhhcccccceeeehhhccccc---eeeccccchhhhhh-------hh--hh-heeccccccccccceEec-
Confidence 98 7889999999999999988876655 23444677777543 21 11 222222223456777766
Q ss_pred CCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013884 206 SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--- 280 (434)
...+++|.+|.+|++||.+. ..+.+. ..+.++++..+++|..|++.+.++ ++.+.|+.+.+....+.+.
T Consensus 312 ---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 312 ---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred ---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccc
Confidence 24455899999999999874 445554 356899999999999999998766 9999999999888877664
Q ss_pred ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ec-c-cceeeEEEcCCCCCCCCc
Q 013884 281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MF-D-KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~-~-~~~~~~w~p~~~~~~~~~ 343 (434)
+.+.+.|||||+|+++|+. |+.|+||++.+..+... .. . .+..+.|.|-+.+++...
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 4555999999999999999 99999999966554443 11 2 599999999999998874
No 81
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=7e-17 Score=160.07 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=158.6
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .........+....|||+ +..+++...+.+ ...+.++++.. ++ ...+..+......+.|+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g--~~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFESG--RSALVIQTLAN---GA-VRQVASFPRHNGAPAFS 251 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCC-CCEEEEEEecCC--CcEEEEEECCC---CC-eEEccCCCCCcCCeEEC
Confidence 788888765443 222223345789999999 566665543322 35788888865 32 22233334445578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~ 228 (434)
|||+.|++..+.+ |...||.+++.++....++ .....+..+.|+|||+.+++.+.. .+ .+.++|+.+
T Consensus 252 PDG~~La~~~~~~---------g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~-~g~~~Iy~~d~~~ 320 (429)
T PRK03629 252 PDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQ-AGRPQVYKVNING 320 (429)
T ss_pred CCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCC-CCCceEEEEECCC
Confidence 9999988764321 3345888887765433332 224567889999999999876532 23 566667765
Q ss_pred eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884 229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
.....+ .........|||||++|+..+..+....|++||+++++..............|||||++|+.++. |
T Consensus 321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~------~ 394 (429)
T PRK03629 321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS------Q 394 (429)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc------C
Confidence 444433 33445678999999999887755445679999998875433333223335899999999999998 5
Q ss_pred Cc---EEEEeecCceeeeee--cccceeeEEEcC
Q 013884 307 NG---IKIFHHNGSLFFKKM--FDKLFQAEWKPV 335 (434)
Q Consensus 307 ~~---i~iw~~~g~~~~~~~--~~~~~~~~w~p~ 335 (434)
+. +.+++++|+...... ...+....|+|.
T Consensus 395 ~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 395 GMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 54 778888898766553 346788889874
No 82
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.2e-17 Score=163.11 Aligned_cols=276 Identities=14% Similarity=0.065 Sum_probs=203.6
Q ss_pred cceEEe-cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884 2 LLLLTC-LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~f-SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
|..|.| -|+.++|+.++ ..+.++++++.+-.+- -+.+ |.+.+.++.-..+|-+|++++ |+++++|.+++
T Consensus 326 I~Dm~~lG~e~~~laVAT-----Ns~~lr~y~~~~~~c~-ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVAT-----NSPELRLYTLPTSYCQ-IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred heeeeecCCccceEEEEe-----CCCceEEEecCCCceE-EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 344554 57889999888 7789999998887764 3333 447787888556778999985 67999998844
Q ss_pred CCC----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--cee----eeeecccceeEEEE
Q 013884 80 FPK----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLA----RRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~~~----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~----~~~~~~~~~~~~~w 149 (434)
... ......|...|..++++-.+...++ +.+.+.++++|+++...+.. .+. ....|..++.++..
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffv-----svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFV-----SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEE-----EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 321 1223455566788888766544444 34677899999998722111 111 22346788999999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~ 228 (434)
+|+.+.+ +....|++-+.|.-+ ++-++.+..+ |...|.++.|+|..+.++ +++.|.+|+||.+. .
T Consensus 472 a~ndkLi---AT~SqDktaKiW~le-~~~l~~vLsG--------H~RGvw~V~Fs~~dq~la--T~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 472 APNDKLI---ATGSQDKTAKIWDLE-QLRLLGVLSG--------HTRGVWCVSFSKNDQLLA--TCSGDKTVKIWSISTF 537 (775)
T ss_pred cCCCceE---Eecccccceeeeccc-CceEEEEeeC--------CccceEEEEeccccceeE--eccCCceEEEEEeccc
Confidence 9988764 334467888765443 2223323233 467899999999999888 56667899999885 3
Q ss_pred eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884 229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
..+.+| |...|..+.|-.+|+.|++++ .+|-|++|++++.+++.++.+| .+..++-+|.+.+|+||+.
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~----- 609 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG----- 609 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC-----
Confidence 444444 788999999999999999999 6789999999999999999998 5677999999999999999
Q ss_pred eCCcEEEEee
Q 013884 305 IDNGIKIFHH 314 (434)
Q Consensus 305 ~D~~i~iw~~ 314 (434)
|+.|.+|+=
T Consensus 610 -Dg~i~~wkD 618 (775)
T KOG0319|consen 610 -DGRIIFWKD 618 (775)
T ss_pred -CeEEEEeec
Confidence 999999974
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.8e-17 Score=152.63 Aligned_cols=274 Identities=13% Similarity=0.205 Sum_probs=194.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEecC-CeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMAT-NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~~-~~i~v~~~ 77 (434)
|++|.|+|.-..|+|++ .|++++||.+.. ...++++.... ..+.+..|.|+|. .+++++- .-++.||+
T Consensus 216 I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred ceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeecc---CccceeeecCCCceEEEecccceEEEEeec
Confidence 78999999999999999 899999998742 33466655544 5666889999998 5555543 58999998
Q ss_pred CCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 78 TDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 78 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
......... ......+..|++||+ +++|++ .|..+.|.|....+ +.-+.... ..+.+..+.|+.+|+
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~-----~G~~G~I~lLhakT---~eli~s~K-ieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAI-----AGNNGHIHLLHAKT---KELITSFK-IEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccccCCCCcccchhheeEecCC-CCeEEE-----cccCceEEeehhhh---hhhhheee-eccEEeeEEEecCCc
Confidence 763321111 112336888999999 566664 35566777766655 44443332 234667899999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE--EEEECcCCCEEEEEEccCCCeEEEEecc-----
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFMPASATIFNKK----- 227 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~~~wspdg~~~av~~g~~~~~i~l~d~~----- 227 (434)
.|+++.. + | .+|.+++... .+.-....+|.|+ +++.|++|.+|| +|+..|.|.|||.+
T Consensus 358 ~l~~~~~-----~-----G--eV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA--~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 358 ELLASGG-----T-----G--EVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLA--TGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEEEEcC-----C-----c--eEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEE--eccCcceEEEeccchhhcc
Confidence 8876531 1 3 3555555443 2333333356665 678889999999 69999999999964
Q ss_pred --ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEE
Q 013884 228 --CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 228 --~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas 298 (434)
-.++..+ -...|+++.|+||+++||+++.. ....+++..+-+......+... .+++++|||.|-||+.|.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 2345444 35778999999999999999865 3457888888777666655443 567899999999999999
Q ss_pred cCCceeeCCcEEEEeec
Q 013884 299 TAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~~ 315 (434)
. ++.+.+|.+.
T Consensus 502 e------~grv~l~kL~ 512 (514)
T KOG2055|consen 502 E------AGRVHLFKLH 512 (514)
T ss_pred C------CCceeeEeec
Confidence 9 9999999763
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=3.1e-16 Score=147.90 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=161.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
+.+++|+|+|++|+... ..++.|++||+.+++.+..+.... . ...+.|+||++.++.. .++.|.+||+..
T Consensus 33 ~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCA----SDSDTIQVIDLATGEVIGTLPSGP---D-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEeccCCC---C-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 45789999999875433 157899999999998877665432 2 3378999999977554 357999999976
Q ss_pred CCCceeeeeec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 80 FPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 80 ~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... ...+.. ..+..+.|+|++ ..+++... ....+.+|+... ...+... ........+.|+++|+.|++
T Consensus 105 ~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~----~~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 105 RKV--LAEIPVGVEPEGMAVSPDG-KIVVNTSE----TTNMAHFIDTKT---YEIVDNV-LVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeE--EeEeeCCCCcceEEECCCC-CEEEEEec----CCCeEEEEeCCC---CeEEEEE-EcCCCccEEEECCCCCEEEE
Confidence 432 222221 236788999984 44443221 123466677755 3333322 22234457899999998765
Q ss_pred EEEecccccCceeecceeEEEEeeCCCc-eeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~ 231 (434)
... .+.. ++.++..... ...+.... ......++|+|+|+.+++..+ .+..+.+||++...+
T Consensus 174 ~~~--~~~~---------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 174 SSE--IGGT---------VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEV 241 (300)
T ss_pred EcC--CCCE---------EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence 421 1222 3333333221 11111110 112346899999998665433 355899999964333
Q ss_pred -EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013884 232 -LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP 289 (434)
Q Consensus 232 -~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp 289 (434)
..+ +...+.++.|+|+|++|++++. .+|+|.+||+++++.+..+... .+..++++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 242 LDYLLVGQRVWQLAFTPDEKYLLTTNG--VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEEEeCCCcceEEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 222 4557889999999999987642 3579999999999887777654 455566654
No 85
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-17 Score=145.58 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=180.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.|+.||+.|.||+.+. .|+.|.|||+.|...-+.+..+ ...+.+++||+||+.|++++ |+.|.+||+..+.
T Consensus 27 ~~~~Fs~~G~~lAvGc-----~nG~vvI~D~~T~~iar~lsaH---~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC-----ANGRVVIYDFDTFRIARMLSAH---VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred ceEEeccCcceeeeec-----cCCcEEEEEccccchhhhhhcc---ccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 5899999999999998 8999999999988765555553 36788999999999999985 6799999998877
Q ss_pred CceeeeeecC-CeeEEEEeCCCCCe-EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEE
Q 013884 82 KGILYRLRVP-GVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 82 ~~~~~~~~~~-~v~~~~~sp~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~ 157 (434)
. ..+++++ .|....|+|-..+. +++-..++ ..+..++-+. ...+..-.-. ........+.+.|++|+
T Consensus 99 ~--l~rirf~spv~~~q~hp~k~n~~va~~~~~s----p~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 99 P--LKRIRFDSPVWGAQWHPRKRNKCVATIMEES----PVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred c--eeEEEccCccceeeeccccCCeEEEEEecCC----cEEEEecCCc---eeeccCCCccccccccccccccCCCCEEE
Confidence 4 3444443 58888999975443 33322221 1222222111 0000000000 00001124677888876
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------- 228 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~------- 228 (434)
..++ .++ |..++.... ++...+. ....|..+.++-.|+.|++ ...|..|+.|+++-
T Consensus 170 tGts-----KGk-------llv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 170 TGTS-----KGK-------LLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EecC-----cce-------EEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCcc
Confidence 6431 122 333333221 2222211 1357889999999999986 55688999998741
Q ss_pred -e--eEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEE
Q 013884 229 -R--PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 229 -~--~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas 298 (434)
+ +.+.+ .+.+-++++||-+|.|++.++. ....++||....|.++..+.+. ...++.|.|-...|++-
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si- 311 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI- 311 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-
Confidence 1 11222 3456678999999999998763 4579999999999888888765 45668999998887776
Q ss_pred cCCceeeCCcEEEEeec
Q 013884 299 TAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~~ 315 (434)
. .+.++||...
T Consensus 312 ~------sg~v~iw~~~ 322 (405)
T KOG1273|consen 312 A------SGVVYIWAVV 322 (405)
T ss_pred c------CCceEEEEee
Confidence 3 7999999864
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.79 E-value=7.8e-18 Score=149.11 Aligned_cols=272 Identities=11% Similarity=0.151 Sum_probs=193.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC------------C------cEEEEEeecCcCCCCCCeeeecCCCcE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET------------G------EAVYQLFQKNMTKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~------------g------~~~~~~~~~~~~~~~~~~~~~S~d~~~ 63 (434)
+++.+|||||.+++|++ .|..|+|.|++. | -.++++.. |.+.+.++.|.|-+..
T Consensus 115 cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD---H~devn~l~FHPre~I 186 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD---HVDEVNDLDFHPRETI 186 (430)
T ss_pred eeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh---ccCcccceeecchhhe
Confidence 46889999999999998 899999999861 1 12445444 3478889999999999
Q ss_pred EEEec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---e
Q 013884 64 ACRMA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---R 137 (434)
Q Consensus 64 la~~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~ 137 (434)
|++++ |++|++||..........+ ...+.|.+++|+|.++ ++++ +..-..+++|++.+ -+.... -
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllv-----gTdHp~~rlYdv~T---~QcfvsanPd 257 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLV-----GTDHPTLRLYDVNT---YQCFVSANPD 257 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEE-----ecCCCceeEEeccc---eeEeeecCcc
Confidence 99995 6799999987643222222 2245799999999954 4443 23335789999977 333322 2
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEE
Q 013884 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~ 214 (434)
..|...++++.+|+.|+. .+. ...|..++.|+|-.+ .|.-++. ....|.+..|..+|+++. +
T Consensus 258 ~qht~ai~~V~Ys~t~~l-YvT--aSkDG~IklwDGVS~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiL--s 322 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSL-YVT--ASKDGAIKLWDGVSN----------RCVRTIGNAHGGSEVCSAVFTKNGKYIL--S 322 (430)
T ss_pred cccccceeEEEecCCccE-EEE--eccCCcEEeeccccH----------HHHHHHHhhcCCceeeeEEEccCCeEEe--e
Confidence 346778899999999984 222 235666776666433 1222222 146789999999999888 6
Q ss_pred ccCCCeEEEEecc-ceeEEEcC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe--eCCC-ce
Q 013884 215 GFMPASATIFNKK-CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT--RAEC-SV 283 (434)
Q Consensus 215 g~~~~~i~l~d~~-~~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~--~~~~-~~ 283 (434)
..||..+++|.+. +..+..+. ....+...|+....|++.-.- ..+.+.-||.++...+..+ .+.+ +-
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCce
Confidence 8899999999984 55555541 223456788888888887542 3478999999887544433 2223 33
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
.+.-||.+.-|+|++. |..+|.|-
T Consensus 401 ~i~HSP~~p~FmTcsd------D~raRFWy 424 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSD------DFRARFWY 424 (430)
T ss_pred EEEeCCCCCceeeecc------cceeeeee
Confidence 4888999999999999 99999995
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=8.7e-17 Score=142.61 Aligned_cols=262 Identities=10% Similarity=0.099 Sum_probs=183.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|+.|.|||.+.+|+..+ +|+.+++||+...+....|.+. ..+.+++|.++...+..+.+++|+.+|++...
T Consensus 16 IS~v~f~~~~~~LLvss-----WDgslrlYdv~~~~l~~~~~~~----~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSS-----WDGSLRLYDVPANSLKLKFKHG----APLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eeeEEEcCcCCcEEEEe-----ccCcEEEEeccchhhhhheecC----CceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 78999999999999888 9999999999887665566544 66778899987777777789999999998754
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
. ....-|.++|..+..++..+..|+ ++.+.+|++|+..+ ...+......+ .+.++ +-.|+.|++.+
T Consensus 87 ~-~~igth~~~i~ci~~~~~~~~vIs------gsWD~~ik~wD~R~---~~~~~~~d~~k-kVy~~--~v~g~~LvVg~- 152 (323)
T KOG1036|consen 87 E-DQIGTHDEGIRCIEYSYEVGCVIS------GSWDKTIKFWDPRN---KVVVGTFDQGK-KVYCM--DVSGNRLVVGT- 152 (323)
T ss_pred c-eeeccCCCceEEEEeeccCCeEEE------cccCccEEEEeccc---cccccccccCc-eEEEE--eccCCEEEEee-
Confidence 3 445567778999999987555554 67889999999864 22222221111 22233 34567776643
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eecc-ce----eEEEc
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKK-CR----PILEL 234 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l--~d~~-~~----~~~~~ 234 (434)
.|... .+|.+........+-.-.-+..+.+++.-|++.-|++ ++.+|.|.+ +|.. .. -.+..
T Consensus 153 --~~r~v-------~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 153 --SDRKV-------LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --cCceE-------EEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEe
Confidence 22222 2344433222111111122568899999997776774 777887766 4433 11 11111
Q ss_pred C---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013884 235 G---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 235 ~---------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~ 300 (434)
| --|||+|+|+|--..|++|| .+|.|.+||..+.+.+..+... .+..++|+-||..||+|+++
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgG---sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGG---SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecC---CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 2 24799999999999999999 6789999999999888777654 45569999999999999983
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=2.7e-17 Score=143.05 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=165.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------NEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------~~i~v~ 75 (434)
|+|+..+-+.++|+|.+ .|.+++|||+++|+++.++... ..+..+.|+.+|.+++...+ ..|.+|
T Consensus 55 vW~~Did~~s~~liTGS-----AD~t~kLWDv~tGk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGS-----ADQTAKLWDVETGKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred EEEEEecCCcceeeecc-----ccceeEEEEcCCCcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 78888888889999888 8999999999999999998765 55668999999999988754 489999
Q ss_pred eCCCCC-----Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884 76 DTTDFP-----KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 76 ~~~~~~-----~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
|+.+.. .....+ .+...+....|+|.+..+++ +..++.|.+|++.+. .+.+.....|...+..|.
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~------Ghe~G~is~~da~~g--~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA------GHEDGSISIYDARTG--KELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEE------ecCCCcEEEEEcccC--ceeeechhhhcccccccc
Confidence 987432 111222 23456888899998655554 467789999999873 344556677888899999
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEE-----
Q 013884 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SAT----- 222 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~----- 222 (434)
+++|.++.+.. ..|.+-+.+. +. . .+...+...+.||++.+++|.-..+++ .|..++ .|+
T Consensus 198 ~s~d~T~FiT~---s~Dttakl~D-------~~--t-l~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVTTT~~r 263 (327)
T KOG0643|consen 198 FSRDRTYFITG---SKDTTAKLVD-------VR--T-LEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVTTTSTR 263 (327)
T ss_pred ccCCcceEEec---ccCccceeee-------cc--c-eeeEEEeeecccccceecccccceEEe-cCCceeeeeeeeccc
Confidence 99999986442 2455555332 21 1 122333334789999999998776665 355443 232
Q ss_pred -------EEecc-ceeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 223 -------IFNKK-CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 223 -------l~d~~-~~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+|++- .+.+- .-|=+|+|+++|+|+|+..++|| .+|.|++.-.+
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG---EDG~VR~h~Fd 317 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG---EDGYVRLHHFD 317 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC---CCceEEEEEec
Confidence 22221 11121 22668999999999999999988 78899987543
No 89
>PTZ00421 coronin; Provisional
Probab=99.78 E-value=1e-16 Score=159.84 Aligned_cols=220 Identities=9% Similarity=0.054 Sum_probs=147.6
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~ 71 (434)
|++++||| ++++|+|++ .|++|+|||+.++. .+..+..+ ...+.+++|+|++ .+|+++ .|++
T Consensus 78 V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGH---TKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCC---CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 78999999 899999999 89999999997653 34555443 3667799999985 678876 5789
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-eeEEEEC
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-TVQLNWN 150 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~~~~~ws 150 (434)
|+|||+...........+...|.+++|+|+ +..++. .+.++.|+||++.+ +..+.....|... ...+.|.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLat-----gs~Dg~IrIwD~rs---g~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCT-----TSKDKKLNIIDPRD---GTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEE-----ecCCCEEEEEECCC---CcEEEEEecCCCCcceEEEEc
Confidence 999999875543334445667999999998 455543 45678999999987 6677666666543 3467899
Q ss_pred CCCCeEEEEEEe-cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884 151 RGSTGLLAVAQS-DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~-~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~ 229 (434)
+++..++..... ..|... .||.+...........++....+....|+|+++.+++ .|..|+.|++||+...
T Consensus 221 ~~~~~ivt~G~s~s~Dr~V-------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l-ggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQI-------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI-GSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeE-------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE-EEeCCCeEEEEEeeCC
Confidence 988876543211 112222 2343322111111222333455667789999998876 3545889999999644
Q ss_pred e-EEEc---CCcCeeEEEECC
Q 013884 230 P-ILEL---GSGPYNTVRWNP 246 (434)
Q Consensus 230 ~-~~~~---~~~~~~~i~~sP 246 (434)
. +... ...+...++|.|
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceEEEeeccCCCCCcceEecc
Confidence 3 2222 234556677766
No 90
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.6e-16 Score=158.79 Aligned_cols=257 Identities=16% Similarity=0.233 Sum_probs=176.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+.|+|.|+|.+|+|++ .|+.|++|+..+- +...++... ...+ ....-++.+|+++ .+++|++|..+++
T Consensus 17 t~i~~d~~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~~---g~~v--~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCG-----SDGDIRKWKTNSDEEEPETIDIS---GELV--SSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred EEEEEcCCCCEEEEec-----CCCceEEeecCCcccCCchhhcc---Ccee--EEEeecccceEEeeccceEEEeeCCCC
Confidence 5689999999999999 8999999987655 333333211 1223 3445566677766 5689999999887
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
... ...++.. .++.++++-+ +..++. ++.+-.|++.++.. .........|++.+.++.++|.|+.|++.
T Consensus 87 ~~~~iL~Rftl-p~r~~~v~g~-g~~iaa-----gsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 87 EEDTILARFTL-PIRDLAVSGS-GKMIAA-----GSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred Cccceeeeeec-cceEEEEecC-CcEEEe-----ecCceeEEEEeccc---cchheeecccCCceeeeeEcCCCCEEEEE
Confidence 643 2233443 3778888877 444443 45566889999887 66777788899999999999999997764
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeec---------CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-e
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---------RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R 229 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---------~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~ 229 (434)
. .|...+ +|.++ .. ....++ .....+..++|+|+|..|++. ..++.|.+|+..+ .
T Consensus 157 s---~dG~v~-------iw~~~--~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~--~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 157 S---CDGKVQ-------IWDLQ--DG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP--PVDNTVKVYSRKGWE 221 (933)
T ss_pred e---cCceEE-------EEEcc--cc-hhhhhcccCCccccccccceeeeeeecCCCCeEEee--ccCCeEEEEccCCce
Confidence 3 333333 33332 11 111111 113456789999999999974 3467999998863 3
Q ss_pred eEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 230 PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 230 ~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
..+.+ +...++.+.|||+|+|||.++ ++|.|-|||+++.+. ......+.+++|-|++..|-..+.
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence 44443 344489999999999999998 778999999998332 112225666999999876554443
No 91
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.6e-17 Score=157.88 Aligned_cols=260 Identities=11% Similarity=0.109 Sum_probs=190.3
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..|.++++.|-+-.++.+ .+|.|+||+.+..............|+...|-+-. .-+. .+..+..|++|++.+
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv-----~GsDD~~IrVfnynt- 86 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIV-----TGSDDMQIRVFNYNT- 86 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEE-----EecCCceEEEEeccc-
Confidence 677899999999876655 78999999988744322233333345555554442 2222 145678999999988
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECc-C
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY-S 206 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wsp-d 206 (434)
...+.+...|..-+.++.-+|.--+++. ++ .|-+.+.|.-+ +.-.+....+ |+--|.+++|.| |
T Consensus 87 --~ekV~~FeAH~DyIR~iavHPt~P~vLt--sS-DDm~iKlW~we---------~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 87 --GEKVKTFEAHSDYIRSIAVHPTLPYVLT--SS-DDMTIKLWDWE---------NEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred --ceeeEEeeccccceeeeeecCCCCeEEe--cC-CccEEEEeecc---------CceeeeeEEcCcceEEEEEEecCCC
Confidence 7888888889888999999998877643 22 45666644332 2223333332 466789999999 5
Q ss_pred CCEEEEEEccCCCeEEEEecc-ceeEE--EcCCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-
Q 013884 207 GSEFAVVYGFMPASATIFNKK-CRPIL--ELGSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE- 280 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~-~~~~~--~~~~~~~~~i~~sP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~- 280 (434)
.+.|| +++-|++|++|.+. ..+.+ +-|...||++.|-|-|. +|++|+.| -.|+|||.++..++.++++|
T Consensus 153 ~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD---~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 153 PNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD---LTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred cccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC---ceEEEeecchHHHHHHhhccc
Confidence 56788 68889999999984 33444 44889999999988774 99999855 49999999999999999987
Q ss_pred -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCCC
Q 013884 281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
+++.+.|.|.=..|++|+. |+++||||-..-.+ .....+++|++.-.+....+..
T Consensus 228 ~Nvs~v~fhp~lpiiisgsE------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSE------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred ccceEEEecCCCcEEEEecC------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence 7777999999999999999 99999999754322 2234568888888777655443
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.4e-17 Score=141.42 Aligned_cols=260 Identities=13% Similarity=0.176 Sum_probs=179.9
Q ss_pred eeeecC--CCcEEEEe-------cCCeEEEEeCCCCC-Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884 54 SIRFSS--DEAVACRM-------ATNEIQFFDTTDFP-KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 54 ~~~~S~--d~~~la~~-------~~~~i~v~~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
+++||| ++++++.. ++|.+.|.++.+.. ...... ...+++-+++||+.....+... ..++.++|
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a-----~GDGSLrl 87 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA-----SGDGSLRL 87 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE-----ecCceEEE
Confidence 789999 44443322 34799999986432 212222 2356899999999866555432 34579999
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ 202 (434)
|+++.. ..||.....|+.++.++.|++.-+...+.. .-|.+.|.|.+. .......-..++..|+..+
T Consensus 88 ~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~---------r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 88 FDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPN---------RPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred eccCCC--CcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCC---------CCcceEeecCCccEEEEEe
Confidence 997653 678888889999999999999877765542 345555544321 1111111223578999999
Q ss_pred ECc-CCCEEEEEEccCCCeEEEEecc--ce-eEEEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEE
Q 013884 203 WSY-SGSEFAVVYGFMPASATIFNKK--CR-PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGT 276 (434)
Q Consensus 203 wsp-dg~~~av~~g~~~~~i~l~d~~--~~-~~~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~ 276 (434)
||| ..+.|+ +.+.|+.++|||++ ++ .+...|...+.++.||...+ .|++|+ .++.|+.||+++.+ .+..
T Consensus 155 ~sp~~~nlfa--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 155 FSPHIPNLFA--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred cCCCCCCeEE--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhcccccee
Confidence 999 456677 56668999999997 22 23445788999999999765 666677 44599999998774 4666
Q ss_pred eeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCC
Q 013884 277 TRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+| .+-.+.|||... .|++++. |-++|||++.-. ..+..+.+-+..+.|++..+..+.+
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasY------DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASY------DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccc------cceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence 6666 444599999865 4566776 999999999632 2233455668899999987766554
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=6.6e-16 Score=152.79 Aligned_cols=312 Identities=15% Similarity=0.190 Sum_probs=196.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~ 79 (434)
|+++.=||-=..++.+. .++.|.|+++..++.+.+|.+.. ..+.++.|.-||..+.. +. .|.+.+||++.
T Consensus 205 IT~ieqsPaLDVVaiG~-----~~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGL-----ENGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred eeEeccCCcceEEEEec-----cCceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 34444444444444444 78999999999999999998853 67889999999986554 43 47999999987
Q ss_pred CCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeeeecccceeEEEEC-CCCCe
Q 013884 80 FPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRSFFRCSTVQLNWN-RGSTG 155 (434)
Q Consensus 80 ~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~~~~~~~~~~~ws-~~G~~ 155 (434)
....... ..|..+|....+-|+ .+.+.. .+.+..+++|-.. ... .+.++.+.+|.+.-.++++- .+|..
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~-epVl~t-----a~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPG-EPVLVT-----AGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred CeeeeeeeccccCCcccceecCC-CceEee-----ccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEE
Confidence 5443322 255567777777665 333332 2233333333332 211 23444555555555555444 23333
Q ss_pred EEEEEEecccccCcee--------------------------------------------------------ecceeEEE
Q 013884 156 LLAVAQSDVDKTNQSY--------------------------------------------------------YGESKLNY 179 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~--------------------------------------------------------~g~~~l~~ 179 (434)
++. +.. |.+-+++ .|+..++.
T Consensus 350 ils-a~~--Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 350 ILS-AKQ--DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred EEe-ccc--CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 221 111 1111100 12222333
Q ss_pred EeeCCCceeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc-----CCcCeeEEEECCC
Q 013884 180 LTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK 247 (434)
Q Consensus 180 l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~-----~~~~~~~i~~sP~ 247 (434)
++..........|+. ...+.+++.++-|++.++ |+..|.|.+||++... ..+| |.+++..++..--
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 332222222233333 267789999998875553 7778899999997543 3344 6889999999888
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEEEE-----------------------------------------EeeCC--CceE
Q 013884 248 GKFLCLAGFGNLPGDMAFWDYVDGKQLG-----------------------------------------TTRAE--CSVT 284 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~-----------------------------------------~~~~~--~~~~ 284 (434)
++.+++++ .+|.+.+||.++...+. .+.+| .++.
T Consensus 505 n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 505 NRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred CceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 88999998 77899999987643222 12223 4566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc-cceeeEEEcCCCCCCCC
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~~-~~~~~~w~p~~~~~~~~ 342 (434)
++|||||++|++++. |++|++||+ +|.++-....+ ....+.++|.+..|...
T Consensus 582 ~~FS~DgrWlisasm------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 582 MTFSPDGRWLISASM------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eEeCCCCcEEEEeec------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 899999999999999 999999999 67777666554 56778888877766654
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2e-17 Score=164.08 Aligned_cols=235 Identities=16% Similarity=0.226 Sum_probs=154.5
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC----------CeeEEEEeCCCCCeEE-EEecCCC-CC
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP----------GVAAFEVSKAPGSHVA-VFVPESK-GS 116 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~~ia-~~~~~~~-~~ 116 (434)
..| ++.||+||+|||+++ |+.|+||.+-+............ .+.....++. ..-. .-.+... ..
T Consensus 269 aIw-~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~--~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 269 AIW-AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE--KISSRTSSSRKGSQS 345 (712)
T ss_pred cEE-EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc--cccccccccccccCC
Confidence 445 999999999999995 67999999865222110000000 0000000110 0000 0000010 11
Q ss_pred CceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC
Q 013884 117 PASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 195 (434)
Q Consensus 117 ~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~ 195 (434)
+. +. .....+. ..+|++....|.+++..+.|+.++- | .+...|+|.+ ||.+ +..+|.-.+.|.
T Consensus 346 ~~-~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-L---LSSSMDKTVR-------LWh~---~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 346 PC-VL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-L---LSSSMDKTVR-------LWHP---GRKECLKVFSHN 409 (712)
T ss_pred cc-cc-CCCccccccccchhhhhccchhheecccccCCe-e---EeccccccEE-------eecC---CCcceeeEEecC
Confidence 11 11 1111111 1578888889999999999998753 2 2334788887 4444 344777778889
Q ss_pred CCeEEEEECc-CCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.-|++|+|+| |.++|+ +|+-|++++||++....+... -..-|++++|+|||++.++|. ..|.++||++...+
T Consensus 410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt---~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT---FNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE---eccEEEEEEccCCe
Confidence 9999999999 455555 899999999999976666554 257899999999999999999 56899999999876
Q ss_pred EEEEee----------CCCceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee
Q 013884 273 QLGTTR----------AECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i~~~~----------~~~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.....+ ++.++.+++.|... .+++.+. |..|||+|.
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------DSrIRI~d~ 531 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------DSRIRIYDG 531 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC------CCceEEEec
Confidence 554332 23577788886543 4777777 999999997
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=1.6e-16 Score=147.71 Aligned_cols=265 Identities=12% Similarity=0.159 Sum_probs=186.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec---------------CcCCCCCCeeeecCCCcEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK---------------NMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~---------------~~~~~~~~~~~~S~d~~~la~ 66 (434)
|.||.+|||++|..+++ .|+.|.=|++.+|+..+-+... ..|...+.+++.|+||+|||+
T Consensus 145 ~~~vals~d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ceEEEeeccccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 67999999999999998 7889999999998754211111 023345568999999999999
Q ss_pred ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
+. +..|+||+..+.+.....+.|-..|.+++|=-+.+.+++ .+.+..|++|++.. ..-+.+.-.|...+.
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys------~s~Drsvkvw~~~~---~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS------ASADRSVKVWSIDQ---LSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceee------eecCCceEEEehhH---hHHHHHHhCCcccee
Confidence 95 569999999988765666677777888877655444433 35677899999987 555656666666666
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
.+.-...++.+.+ ...|.+.+ ||.+ ......+-....+.+-+++|- +..+|+ +|+++|.|.||+
T Consensus 291 ~IdaL~reR~vtV---GgrDrT~r-------lwKi---~eesqlifrg~~~sidcv~~I-n~~Hfv--sGSdnG~IaLWs 354 (479)
T KOG0299|consen 291 GIDALSRERCVTV---GGRDRTVR-------LWKI---PEESQLIFRGGEGSIDCVAFI-NDEHFV--SGSDNGSIALWS 354 (479)
T ss_pred eechhcccceEEe---ccccceeE-------EEec---cccceeeeeCCCCCeeeEEEe-ccccee--eccCCceEEEee
Confidence 6655555554322 23566655 3433 111222223346788889987 455677 699999999999
Q ss_pred c-cceeEEEc---C---C--------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC-CceEE
Q 013884 226 K-KCRPILEL---G---S--------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTS 285 (434)
Q Consensus 226 ~-~~~~~~~~---~---~--------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~-~~~~~ 285 (434)
+ +..+++.. | . ..+++++-.|...++|+|+ .+|.|++|-+.++ ..+..+... .+..+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS---~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS---WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC---CCCceEEEEecCCccccceeeecccccEEEEE
Confidence 8 45565543 1 1 2678999999999999988 5689999999877 344444433 44559
Q ss_pred EECCCCCEEEEEEc
Q 013884 286 EWSPDGRYFMTATT 299 (434)
Q Consensus 286 ~wspdg~~l~tas~ 299 (434)
+|+++|++|++|..
T Consensus 432 ~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 432 AFSNSGKRIVAGIG 445 (479)
T ss_pred EEccCCCEEEEecc
Confidence 99999998877754
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.76 E-value=4.8e-18 Score=146.29 Aligned_cols=216 Identities=14% Similarity=0.186 Sum_probs=156.8
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-eeeeeecCCeeEEEEeCC
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~ 101 (434)
.|=+-+|||..+|.++++|.++ -.+..++|+.|.++|++++. .-++|||++..... .....+..+|+.+.|.-.
T Consensus 79 adftakvw~a~tgdelhsf~hk----hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHK----HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhh----heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence 5677899999999999999877 45778999999999999965 58999999876532 234556778999988876
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
...++. ...++.||+|+..+ +..+.++ +++..+.++..+++|.+|.+. ...+ +.+++
T Consensus 155 D~~iLS------Sadd~tVRLWD~rT---gt~v~sL-~~~s~VtSlEvs~dG~ilTia----~gss---------V~Fwd 211 (334)
T KOG0278|consen 155 DKCILS------SADDKTVRLWDHRT---GTEVQSL-EFNSPVTSLEVSQDGRILTIA----YGSS---------VKFWD 211 (334)
T ss_pred CceEEe------eccCCceEEEEecc---CcEEEEE-ecCCCCcceeeccCCCEEEEe----cCce---------eEEec
Confidence 333333 24567899999987 5555544 457788899999999986553 1111 22222
Q ss_pred eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecC
Q 013884 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 182 ~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~ 257 (434)
...- .......-...|.+...+|+...|+ +|..|..++.||.. ++.+-.+ |.++|.|+.|||||...++|+
T Consensus 212 aksf-~~lKs~k~P~nV~SASL~P~k~~fV--aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS-- 286 (334)
T KOG0278|consen 212 AKSF-GLLKSYKMPCNVESASLHPKKEFFV--AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS-- 286 (334)
T ss_pred cccc-cceeeccCccccccccccCCCceEE--ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC--
Confidence 2111 1111122256788999999885555 68889999999985 4444443 789999999999999999888
Q ss_pred CCCCeEEEEEccCCE
Q 013884 258 NLPGDMAFWDYVDGK 272 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~ 272 (434)
.||+|+||.+..++
T Consensus 287 -EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 -EDGTIRLWQTTPGK 300 (334)
T ss_pred -CCceEEEEEecCCC
Confidence 78999999876553
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.2e-15 Score=127.17 Aligned_cols=264 Identities=14% Similarity=0.211 Sum_probs=178.8
Q ss_pred CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-----------e---e-eeeecCCeeEEEEeCCCCCeEEEEecCC
Q 013884 50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-----------I---L-YRLRVPGVAAFEVSKAPGSHVAVFVPES 113 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-----------~---~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~ 113 (434)
..+++++|.|.|.+.|.+++ .+++|-..+..... . . .+.|...|...+|||+ +..|+ +
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia-----t 106 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA-----T 106 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEE-----e
Confidence 56779999999999998876 47777654332110 0 0 1123446899999999 56676 3
Q ss_pred CCCCceEEEEEcCCCCC--CCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee
Q 013884 114 KGSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 188 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~--~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~ 188 (434)
+..+..|++.......- .......+.|...+..++|-. .|..|++.+. . |.-++|.-+...+..-
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g--a--------gdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG--A--------GDCKIYITDCGRGQGF 176 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC--C--------CcceEEEeecCCCCcc
Confidence 55566788777654210 122233445666666777643 3444443221 1 3334565554443222
Q ss_pred eeecCCCCCeEE-EEECcCCCEEEEEEccCCCeEEEEecccee-EEE----cC-----CcCeeEEEECCCCCeEEEEecC
Q 013884 189 LVPLRKEGPVHD-VQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE----LG-----SGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 189 ~v~l~~~~~i~~-~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~----~~-----~~~~~~i~~sP~g~~l~~~~~~ 257 (434)
..-..+.|.|.+ ..|+ |-.|+ +|+.|.+|++||++.+. +.. ++ ...+..++..|.|++|++|-
T Consensus 177 ~a~sghtghilalyswn--~~m~~--sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~-- 250 (350)
T KOG0641|consen 177 HALSGHTGHILALYSWN--GAMFA--SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH-- 250 (350)
T ss_pred eeecCCcccEEEEEEec--CcEEE--ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--
Confidence 222234666665 3575 55566 79999999999998432 222 22 35688899999999999887
Q ss_pred CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee-------eecccce
Q 013884 258 NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLF 328 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~-------~~~~~~~ 328 (434)
.+....+||++.++.+..+.-| .+.++.|||.-.|++|++. |+.|++-|++|.+-++ ++.+...
T Consensus 251 -~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 251 -ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred -CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceE
Confidence 4458999999999999988766 5667999999999999999 9999999999975544 3567899
Q ss_pred eeEEEcCCCCCCCC
Q 013884 329 QAEWKPVSPDKFGD 342 (434)
Q Consensus 329 ~~~w~p~~~~~~~~ 342 (434)
+..|+|+.-..++.
T Consensus 324 ~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 324 QCRWHPQDFSFISS 337 (350)
T ss_pred EEEecCccceeeec
Confidence 99999997655554
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=4.1e-16 Score=151.69 Aligned_cols=302 Identities=13% Similarity=0.201 Sum_probs=212.3
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeee------------ecCCCcEEEEec
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIR------------FSSDEAVACRMA 68 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~------------~S~d~~~la~~~ 68 (434)
++.|+|....|...- .|..|.|||+.+-..+ +.+..++. ..| .+. --|-+.++-+..
T Consensus 329 A~~Fdet~~klscVY-----ndhSlYvWDvrD~~kvgk~~s~lyHS~--ciW-~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVY-----NDHSLYVWDVRDVNKVGKCSSMLYHSA--CIW-DVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEEecCCCceEEEEE-----cCceEEEEeccccccccceeeeeeccc--eee-eeccccccccCcccccCCccceeEecC
Confidence 678999999988776 7999999999764433 33333321 222 211 123455555668
Q ss_pred CCeEEEEeCCCCCCceee----------ee----------e-----------------cCCeeEEEEeCCCCCeEEEEec
Q 013884 69 TNEIQFFDTTDFPKGILY----------RL----------R-----------------VPGVAAFEVSKAPGSHVAVFVP 111 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~----------~~----------~-----------------~~~v~~~~~sp~~~~~ia~~~~ 111 (434)
|++|++|++.......+. ++ + --+++++++||+ +.++|
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLA---- 475 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLA---- 475 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceec----
Confidence 899999998541111110 00 0 016889999998 56666
Q ss_pred CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
++..-+.+++|++.+ -...+....|..++.++.++.. +..|+ ++...|.. ||.+++...+...
T Consensus 476 -sGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLL--ASasrdRl---------IHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 476 -SGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLL--ASASRDRL---------IHVYDVKRNYDLV 540 (1080)
T ss_pred -ccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhh--hhccCCce---------EEEEecccccchh
Confidence 456678999999988 6677788889999999988764 33443 33333332 5666766666655
Q ss_pred eecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-----cee----EEEcCCcCeeEEEECCCCCeEEEEecCCC
Q 013884 190 VPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 190 v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-----~~~----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
.+++ +...|.++.|..+|-.+-.+++.-|.. ..|+.. +.. .+.+.+.....+..-|..++++++..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD-- 617 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD-- 617 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc--
Confidence 5665 478999999999886666556665644 444432 111 122345667789999999999999955
Q ss_pred CCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeE
Q 013884 260 PGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAE 331 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~ 331 (434)
.+|+|||++++++...|++. ..+-+...|.|-||+|..+ |.++.++|| +|+++... +.+-+..+.
T Consensus 618 -rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 618 -RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred -cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeee
Confidence 49999999999999998764 4455899999999999999 999999998 67776654 556788999
Q ss_pred EEcCCCCCCCCc
Q 013884 332 WKPVSPDKFGDI 343 (434)
Q Consensus 332 w~p~~~~~~~~~ 343 (434)
|.+++..|++..
T Consensus 691 F~nDCkHlISvs 702 (1080)
T KOG1408|consen 691 FLNDCKHLISVS 702 (1080)
T ss_pred ecccchhheeec
Confidence 999999888763
No 99
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.75 E-value=1.8e-16 Score=143.05 Aligned_cols=262 Identities=12% Similarity=0.146 Sum_probs=196.0
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|..-+.|+++-|-+.+|++++ |.+|.|||+...........+++.|..+++|+- .+++- +.+.+..|+-||+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlF-----s~gedk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLF-----SAGEDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEE-----EecCCCeeEEEech
Confidence 346678999999999999995 679999999987665556667888999999987 34443 24677899999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. ++.|+....|-..+.++...|.-+.| .+...|.+.+.| .+.. .....+...+..+|.++.+.|.
T Consensus 224 ~---nkvIR~YhGHlS~V~~L~lhPTldvl---~t~grDst~RvW-------DiRt--r~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 224 Y---NKVIRHYHGHLSGVYCLDLHPTLDVL---VTGGRDSTIRVW-------DIRT--RASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred h---hhhHHHhccccceeEEEeccccceeE---EecCCcceEEEe-------eecc--cceEEEecCCCCcceeEEeecC
Confidence 8 88999988999999999999976654 334466666644 3322 1122223346899999999998
Q ss_pred CCEEEEEEccCCCeEEEEeccc-eeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce
Q 013884 207 GSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV 283 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~-~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~ 283 (434)
..+++ +|++|++|++||++. +.... -|+..+.+++.+|....+|+++.+| |+-|++-.++.+..+.+|..+
T Consensus 289 dpqvi--t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f~~nlsgh~~i 362 (460)
T KOG0285|consen 289 DPQVI--TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEFLQNLSGHNAI 362 (460)
T ss_pred CCceE--EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc----ceeccCCccchhhccccccce
Confidence 77777 799999999999963 33333 3788899999999999999988765 999999999999888888444
Q ss_pred --EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee--------c---ccceeeEEEcCCCCCCCCc
Q 013884 284 --TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM--------F---DKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 284 --~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~--------~---~~~~~~~w~p~~~~~~~~~ 343 (434)
.++...|| ++++|+. .+.+..||+....-|+.- . .-++..+|.-.+..|++..
T Consensus 363 intl~~nsD~-v~~~G~d------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGD------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred eeeeeeccCc-eEEEcCC------ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 37777775 5566776 778899999554333321 1 1367777877777777663
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.75 E-value=5.7e-16 Score=154.92 Aligned_cols=267 Identities=13% Similarity=0.162 Sum_probs=190.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
|.+..|. +.++.+.+ .|..|++||..++..+.. +.++. ..+.++++..-+.++++++ |.+++|||...
T Consensus 211 ~~~~q~~--~~~~~~~s-----~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGS-----DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred hhhheee--cCeEEecC-----CCceeEEeecccceEEEeeccCCC---CCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 3455565 55666655 789999999999998887 77754 5555999987677888885 77999999988
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.........|...+..+..-+. .+. +++.+.+|++|++++ +..+.....|...+.++..+ +..++..
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~---~~~-----sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPF---LLV-----SGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred CcEEEEecCCCceEEEEEccCc---eEe-----eccCCceEEEEeccC---cceEEEeccccccEEEEEec--CCEEEEE
Confidence 7766666666666666655432 111 256889999999998 88888888899999999887 5554332
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEEc--
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~~-- 234 (434)
..|.+.+.|.-.. ..+.-.+ .|.+.|.++.+.+. ..++ +|.+|+.|++||++.. .+..+
T Consensus 348 ---s~d~~v~VW~~~~----------~~cl~sl~gH~~~V~sl~~~~~-~~~~--Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 348 ---SYDGTVKVWDPRT----------GKCLKSLSGHTGRVYSLIVDSE-NRLL--SGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred ---ecCceEEEEEhhh----------ceeeeeecCCcceEEEEEecCc-ceEE--eeeeccceEeecCCchhhhhhhhcC
Confidence 2455666554321 1222222 24789999988764 4455 7999999999999755 55555
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|..-++ .....+++|++++ .+|+|++||.++++++..+.++ .+..+++. -..+++++. |+.+++
T Consensus 412 h~~~v~--~l~~~~~~Lvs~~---aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~------~~~~~l 478 (537)
T KOG0274|consen 412 HTSLVS--SLLLRDNFLVSSS---ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD------DGSVKL 478 (537)
T ss_pred Cccccc--ccccccceeEecc---ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec------CCeeEE
Confidence 344443 3345678999888 6679999999999999988883 33445554 467888888 999999
Q ss_pred Eee-cCceee
Q 013884 312 FHH-NGSLFF 320 (434)
Q Consensus 312 w~~-~g~~~~ 320 (434)
||+ +|.+..
T Consensus 479 ~dl~~~~~~~ 488 (537)
T KOG0274|consen 479 WDLRSGTLIR 488 (537)
T ss_pred EecccCchhh
Confidence 999 444444
No 101
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2e-16 Score=141.28 Aligned_cols=306 Identities=11% Similarity=0.117 Sum_probs=185.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
...|||+|+|+++.++ -.+.|-|..+-+.++-|..- ..+..+.|+.|.-++.++ .+..|++|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 3579999999999883 47888898887765555443 233378999999888776 45699999998765
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
-.........++.++.|||++ ..|..+ ....-++.+|.+.+ +...-....+...-.++++|||++.+++..
T Consensus 83 w~ckIdeg~agls~~~WSPdg-rhiL~t----seF~lriTVWSL~t----~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDG-RHILLT----SEFDLRITVWSLNT----QKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred eEEEeccCCCcceeeeECCCc-ceEeee----ecceeEEEEEEecc----ceeEEecccccCceeEEECCCCceeeeeec
Confidence 333333445689999999994 444332 23456788888865 222222233333444555566655544432
Q ss_pred eccc-----------------------ccCceeeccee-EEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEcc
Q 013884 162 SDVD-----------------------KTNQSYYGESK-LNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 162 ~~~d-----------------------~~~~~~~g~~~-l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~ 216 (434)
.|.. .++-.|....+ |-.++ .-.+-.+ .-+..-.+..++|||.++.++| |+
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~~lG~k~v~wsP~~qflav--Gs 229 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GS 229 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--chhhheeeeeeeccceeEEEeccccceEEe--ec
Confidence 2210 00000100000 00000 0000000 0011246778999998888886 66
Q ss_pred CCCeEEEEec-c--------------------------------------------------cee----------EEE--
Q 013884 217 MPASATIFNK-K--------------------------------------------------CRP----------ILE-- 233 (434)
Q Consensus 217 ~~~~i~l~d~-~--------------------------------------------------~~~----------~~~-- 233 (434)
-|+.+++.|. . .+. ++.
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 6765554320 0 000 000
Q ss_pred ----c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884 234 ----L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 234 ----~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
+ ....+.-++||+|..|+++-. ++....+.+||++..+....+. -+.+..+.|.|....|+.++. .
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrn-d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------~ 382 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRN-DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------K 382 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeec-CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------C
Confidence 0 112234589999999999864 5577899999999887655443 356677999999999999988 5
Q ss_pred CcEEEEeecCceeeeeecc--cceeeEEEcCCCCC
Q 013884 307 NGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSPDK 339 (434)
Q Consensus 307 ~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~~~ 339 (434)
..+.+|...|...-..+.. .+..+.|.-.+..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeEEecCCCcEE
Confidence 5679999999655544443 56788888665543
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=5.1e-16 Score=145.31 Aligned_cols=261 Identities=13% Similarity=0.188 Sum_probs=190.7
Q ss_pred CCCCeeeecCCC-cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDE-AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+++|||.. --+|..+.-.+++|+....+......--...+.++.|-.| +..+|+ ++..|.|+||++.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~Llaa-----GD~sG~V~vfD~k~- 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAA-----GDESGHVKVFDMKS- 99 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEc-----cCCcCcEEEecccc-
Confidence 667799999954 3345556679999997664421111111345777888777 445543 56778999999755
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSG 207 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspdg 207 (434)
...+.+...|.+.+....|+|+++.+++.++ .|+..+-| ++.+... ... ..++..|.+.+|+|-.
T Consensus 100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~~---------d~s~a~v-~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKYW---------DLSTAYV-QAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred --HHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEEE---------EcCCcEE-EEEecCCcceeEeeccccCC
Confidence 5677888889999999999999998866542 33333322 2233322 222 2357899999999987
Q ss_pred CEEEEEEccCCCeEEEEeccc--eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEee-CC-C
Q 013884 208 SEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTR-AE-C 281 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~--~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~-~~-~ 281 (434)
..+++ +|+-|++|++||++. ..+.++ |..+|..+.+-|.|..|++|| || .|++||+-+| +.+.... ++ .
T Consensus 166 ~hivv-tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn---~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 166 DHIVV-TGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GN---SVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred CeEEE-ecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CC---eEEEEEecCCceehhhhhcccce
Confidence 77776 788899999999974 466677 789999999999999999987 44 7999999855 5555554 33 6
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
++++.+..|+..|++++. |+.++||+++. +.++...+ ..+..+.-.|++..+.-.
T Consensus 241 VTcL~l~s~~~rLlS~sL------D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSL------DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEEeecCCceEeeccc------ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 778999999999999999 99999999754 45565544 578888888876665544
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=2.7e-16 Score=152.96 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=177.2
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC--CCeEEEEecCCCCCCceEEEEEc
Q 013884 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP--GSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
..++++++.||||++||++. .|+|+||++.+.+.......|...|.++++|--. ..++| +.+.+..|.+|++
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-----SasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-----SASRDRLIHVYDV 533 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-----hccCCceEEEEec
Confidence 35678999999999999995 4799999998876555556666778888887421 12233 4566778999998
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee----cceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~----g~~~l~~l~~~~~~~~~v~l~~~~~i~~~ 201 (434)
... -..+.++..|...++.++|-..|-..- +.++..|+....-. +...++. . ...++ ....++++
T Consensus 534 ~rn--y~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~-----r--~t~t~-~ktTlYDm 602 (1080)
T KOG1408|consen 534 KRN--YDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFP-----R--HTQTL-SKTTLYDM 602 (1080)
T ss_pred ccc--cchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceecc-----c--ccccc-ccceEEEe
Confidence 652 456667778888999999988773222 22333565543211 0001110 0 00111 25789999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
+..|+.++++ ++..|..|+|||+. ++++..| +.+..-.+...|.|-||++.-.+ .++.|+|..+++++.
T Consensus 603 ~Vdp~~k~v~--t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd---ktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 603 AVDPTSKLVV--TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD---KTLCFVDFVSGECVA 677 (1080)
T ss_pred eeCCCcceEE--EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC---CceEEEEeccchhhh
Confidence 9999999888 57789999999996 5666666 34666778999999999998744 599999999999999
Q ss_pred EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
...+| .++.+.|++|-++|++++. |++|-||.+.-
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKLPL 714 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecC------CceEEEEECch
Confidence 88887 4555999999999999999 99999999854
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=139.72 Aligned_cols=207 Identities=15% Similarity=0.276 Sum_probs=138.1
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
|...+++++||.||++||++. |+.|++|++.+|...... .+..+.-+.+.|+|| ...+.++... ...+++
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD-c~s~vv~~~~----g~~l~v 159 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD-CKSVVVSVKR----GNKLCV 159 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC-cceEEEEEcc----CCEEEE
Confidence 558889999999999999985 579999999987642211 223345677888888 4444444331 135566
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ 202 (434)
|.+... .||.+- ++.+..+.. .++-.+.-+|.++-
T Consensus 160 yk~~K~----------------------~dG~~~--------------------~~~v~~D~~---~f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 160 YKLVKK----------------------TDGSGS--------------------HHFVHIDNL---EFERKHQVDIINIG 194 (420)
T ss_pred EEeeec----------------------ccCCCC--------------------ccccccccc---ccchhcccceEEEe
Confidence 655331 112211 111111000 00011134555566
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC-----E
Q 013884 203 WSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG-----K 272 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~--~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~-----~ 272 (434)
..-++++++ +.+.+.+|.|||++++.+..+.+.. -...+.||+|++|+++||.- +|.+|..- +| +
T Consensus 195 iA~~~k~im--sas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 195 IAGNAKYIM--SASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred ecCCceEEE--EecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCC---CceEEEEEeccCcchhhhh
Confidence 666666666 6777889999999988887774332 34578999999999999875 89999853 33 2
Q ss_pred EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.+..+.+| .+..++|||+++.++|++. ||++||||.+
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSk------DG~wriwdtd 308 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSK------DGKWRIWDTD 308 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEec------CCcEEEeecc
Confidence 34556666 5566999999999999999 9999999974
No 105
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.9e-15 Score=150.36 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=154.9
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+||...... ....-+...+.++.|||+ +..+++...+ +....|.+|++.. +.. .....+......+.|+
T Consensus 185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpD-g~~la~~s~~--~~~~~l~~~dl~~---g~~-~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 185 ALQVADSDGYNP-QTILRSAEPILSPAWSPD-GKKLAYVSFE--RGRSAIYVQDLAT---GQR-ELVASFRGINGAPSFS 256 (433)
T ss_pred EEEEECCCCCCc-eEeecCCCccccccCCCC-CCEEEEEecC--CCCcEEEEEECCC---CCE-EEeccCCCCccCceEC
Confidence 688998754332 222223345788999999 4556554322 2245788999865 332 2333344445578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~ 228 (434)
|||+.|++..+.+ |...||.++..++....+. ...+....++|+|||+++++.+. ..+ .+.++|+.+
T Consensus 257 pDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~ 325 (433)
T PRK04922 257 PDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASG 325 (433)
T ss_pred CCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence 9999988765332 3346888887665433222 22334567999999999997643 233 577777765
Q ss_pred eeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884 229 RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
..... ++......+.|||||++|+....++....|.+||+.+++............+.|+|||++|+.++... -.
T Consensus 326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~ 402 (433)
T PRK04922 326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GR 402 (433)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---Cc
Confidence 43333 33334457899999999988764433347999999887654333333344589999999999888730 12
Q ss_pred CcEEEEeecCceeeeee--cccceeeEEEc
Q 013884 307 NGIKIFHHNGSLFFKKM--FDKLFQAEWKP 334 (434)
Q Consensus 307 ~~i~iw~~~g~~~~~~~--~~~~~~~~w~p 334 (434)
..+.+++.+|....... ..++....|+|
T Consensus 403 ~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 403 GVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 35778888887655543 24677788877
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=2.5e-17 Score=148.79 Aligned_cols=269 Identities=14% Similarity=0.231 Sum_probs=174.6
Q ss_pred CCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 48 TKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 48 ~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
|.+++.|++=.|.- ..++++ .||+|+|||+...........|..-|..+.+... ..+. .|++.+|+.|.+
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~--~~~t------vgdDKtvK~wk~ 136 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT--SFFT------VGDDKTVKQWKI 136 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc--ceEE------ecCCcceeeeec
Confidence 55888888888876 667777 5899999999886655556666667888877752 2222 367778999998
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEEC
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~ws 204 (434)
.. .++.+.- .+.....+.-+..+.. .+++ |+ .+.+++..... .+.+.. ....|+++.|+
T Consensus 137 ~~----~p~~til-g~s~~~gIdh~~~~~~---FaTc----------Ge-~i~IWD~~R~~Pv~smsw-G~Dti~svkfN 196 (433)
T KOG0268|consen 137 DG----PPLHTIL-GKSVYLGIDHHRKNSV---FATC----------GE-QIDIWDEQRDNPVSSMSW-GADSISSVKFN 196 (433)
T ss_pred cC----Ccceeee-cccccccccccccccc---cccc----------Cc-eeeecccccCCccceeec-CCCceeEEecC
Confidence 54 1222111 1111111111111111 0100 11 12222222211 011111 13568889999
Q ss_pred cCCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-
Q 013884 205 YSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE- 280 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~- 280 (434)
|....+.. ++.+|+.|.|||++. .+++.. .+-.-|.|+|+|.+-.+.+|. .|..++.||+... +.+..+.+|
T Consensus 197 pvETsILa-s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~---ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 197 PVETSILA-SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN---EDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred CCcchhee-eeccCCceEEEecccCCccceeeeeccccceecCccccceeecc---ccccceehhhhhhcccchhhcccc
Confidence 97765554 566899999999974 445444 345568999999665665555 5679999999876 455556665
Q ss_pred -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCCchhhhhccCcccc
Q 013884 281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKV 355 (434)
Q Consensus 281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~ 355 (434)
.+++++|||.|+.|++|+. |.+|+||.++.. ..+...++.+++|.|+-+..++++.. +-..+++
T Consensus 273 sAV~dVdfsptG~Efvsgsy------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS-----dd~nvRl 341 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSY------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS-----DDGNVRL 341 (433)
T ss_pred eeEEEeccCCCcchhccccc------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecC-----CCcceee
Confidence 6677999999999999999 999999999654 44556788999999999999999984 3345666
Q ss_pred cccc
Q 013884 356 AETK 359 (434)
Q Consensus 356 ~~~~ 359 (434)
+..+
T Consensus 342 Wka~ 345 (433)
T KOG0268|consen 342 WKAK 345 (433)
T ss_pred eecc
Confidence 6543
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=140.33 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=194.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.++...|....++|++ .|+++.++|..+++.+..|.++. ..+..+.|+++...++.++ +..|+||....-
T Consensus 222 i~ald~~~s~~~ilTGG-----~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGG-----EDKTAVLFDKPSNQILATLKGHT---KKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeEEeecCCCCcceecC-----CCCceEEEecchhhhhhhccCcc---eEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 34566666667777877 89999999999999999988754 5677889999999888885 459999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~ 158 (434)
+.......|.+.|+.+..+|.+++++.. ..++.....++.. +..+...+- ...+..+..++|||-.+..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsA------s~d~~w~Fsd~~~---g~~lt~vs~~~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSA------SNDGTWAFSDISS---GSQLTVVSDETSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEe------cCCceEEEEEccC---CcEEEEEeeccccceeEEeeEcCCceEEec
Confidence 6556667777889999999997665542 3455667777766 555554443 2345678899999964322
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~--- 234 (434)
...|...+ +|.+.... ....++- +.++|..++|+-+|-++++ +..|+.|.+||++.. ...++
T Consensus 365 ---gt~d~~vk-------iwdlks~~-~~a~Fpg-ht~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 365 ---GTPDGVVK-------IWDLKSQT-NVAKFPG-HTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred ---cCCCceEE-------EEEcCCcc-ccccCCC-CCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeecc
Confidence 21333333 44443222 1222333 6899999999999988884 667888999999732 22233
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
....++++.|.+.|.+|+++|. +=+|++++-. +..++..+..+. .+.+.|.-+-+++++++. |..++
T Consensus 431 ~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm------d~~l~ 501 (506)
T KOG0289|consen 431 EKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM------DAILR 501 (506)
T ss_pred ccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc------hhheE
Confidence 3457999999999999999963 2355555533 446666665553 344899999999999998 88888
Q ss_pred EEee
Q 013884 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|+.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 108
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=3.8e-16 Score=150.85 Aligned_cols=268 Identities=13% Similarity=0.172 Sum_probs=184.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|..++|-|||+.|+... +..+.|||+.+|..+.++.++. +.+.+++||.||+.+|+++ |..|.+|...-.
T Consensus 15 i~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHK---DtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred hheeEECCCCceEEEec------CCEEEEEeCCCccccccccccc---ceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 56799999999998764 6789999999999999987754 7777999999999999995 569999986542
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
+.....|.+.|..+.|.|.. ..++.. .-+..-+|+... ...+..+ ....+++.+|+.||+++++..
T Consensus 86 --G~LkYSH~D~IQCMsFNP~~-h~LasC------sLsdFglWS~~q---K~V~K~k--ss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 86 --GILKYSHNDAIQCMSFNPIT-HQLASC------SLSDFGLWSPEQ---KSVSKHK--SSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred --ceeeeccCCeeeEeecCchH-HHhhhc------chhhccccChhh---hhHHhhh--hheeEEEeeecCCCcEEEEec
Confidence 24455677889999999973 333321 112334555543 2222222 224567889999999987642
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCC-----EEEEEEccCCCeEEEEeccceeEEE
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-----EFAVVYGFMPASATIFNKKCRPILE 233 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~-----~~av~~g~~~~~i~l~d~~~~~~~~ 233 (434)
.+.++ -.-+..+....++.- ..+.+|.+++|+|.+. .++|+ +...++.+|.+.+..+-.
T Consensus 152 ---~nGTI---------siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 152 ---FNGTI---------SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred ---cCceE---------EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEecceeecc
Confidence 22221 111222222222221 1267999999999643 44543 345577888887766542
Q ss_pred c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884 234 L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 234 ~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i 309 (434)
- -.-.-.|+.|-|+|.|+++|| .++.+.+|-. .|-.+.+... +++..++-.|+|++++.|.. ||+|
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq------DGTi 287 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGG---SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ------DGTI 287 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEcc---CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc------cCee
Confidence 1 122336899999999999999 5568999954 5556665543 47778999999999999999 9999
Q ss_pred EEEeecC
Q 013884 310 KIFHHNG 316 (434)
Q Consensus 310 ~iw~~~g 316 (434)
-.|++--
T Consensus 288 ACyNl~f 294 (1081)
T KOG1538|consen 288 ACYNLIF 294 (1081)
T ss_pred ehhhhHH
Confidence 9998743
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.73 E-value=1.2e-15 Score=140.80 Aligned_cols=225 Identities=13% Similarity=0.183 Sum_probs=163.0
Q ss_pred CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
.++.++.-.+....+++++. .++.+||.+........+.|...|..+.++|+... +. ....+..|+||..+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~-v~-----~aSad~~i~vws~~~- 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT-VI-----TASADEIIRVWSVPL- 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh-ee-----ecCCcceEEeecccc-
Confidence 34445666666567777754 59999999887766667777778999999998432 22 234556899999998
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG 207 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg 207 (434)
.........|...+..+.-+|.|.|++.. +.|++...+ .++. +..-..+.-+ .+-.+++.+|+|||
T Consensus 293 --~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fs-------d~~~-g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 293 --SSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFS-------DISS-GSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred --ccCccccccccccceeeeeccCCcEEEEe---cCCceEEEE-------EccC-CcEEEEEeeccccceeEEeeEcCCc
Confidence 55555666788888999999999997553 233333221 1111 1111111111 13458999999999
Q ss_pred CEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---C
Q 013884 208 SEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---C 281 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~ 281 (434)
..|+ +|.+|+.++|||++.. .+..| |.++|.+|.|+.+|-||+++. .++.|.+||++..+...++.-. .
T Consensus 360 Lifg--tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 360 LIFG--TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred eEEe--ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeecccccc
Confidence 8777 7999999999999743 34445 799999999999999999998 5678999999987766666544 4
Q ss_pred ceEEEECCCCCEEEEEEc
Q 013884 282 SVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~ 299 (434)
+..+.|.+.|.||+.++.
T Consensus 435 v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ceeEEEcCCCCeEEeecc
Confidence 778999999999999976
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=2.2e-16 Score=147.96 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=202.8
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD 76 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~ 76 (434)
+|.++..|-..+++.|++ .+-|+|||+..- ..+..+...+ -.+-++++...|||+.|+.++. .+|.|||
T Consensus 421 vVcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred EEEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeee
Confidence 367888999999999877 477999998532 2233332221 1144567889999998888854 6999999
Q ss_pred CCCCCCceeeeeec--CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 77 TTDFPKGILYRLRV--PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
+.....-....+.. .....+++|||.+-.+++ ..++.|.|||+.+ ...+++...|.....++..++||.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsc------csdGnI~vwDLhn---q~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSC------CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeee------ccCCcEEEEEccc---ceeeecccCCCCCceeEEecCCCc
Confidence 98755433333443 345567788885444444 3456899999988 788999999999999999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 234 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~ 234 (434)
. +++...|.+.+.|+-... .....-+-...|.++..+|++.+++| |-..+.+.+........+.+
T Consensus 565 k---lWTGGlDntvRcWDlreg----------rqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~kyql 629 (705)
T KOG0639|consen 565 K---LWTGGLDNTVRCWDLREG----------RQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEKYQL 629 (705)
T ss_pred e---eecCCCccceeehhhhhh----------hhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccceee
Confidence 9 566778888887642211 11111112568899999999999996 76677898888876655555
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|..-|.++.|++.|+++++.|.|| -+..|.+--|..|..... ..+.+|..|-|.+||+|++. |....|
T Consensus 630 hlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG------dkkATV 700 (705)
T KOG0639|consen 630 HLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG------DKKATV 700 (705)
T ss_pred cccccEEEEEEecccCceeeecCchh---hhhhccCccccceeeccccCcceeeeeccCceEEEecCC------CcceEE
Confidence 677789999999999999999666 788998887876665554 47777999999999999999 877777
Q ss_pred Eee
Q 013884 312 FHH 314 (434)
Q Consensus 312 w~~ 314 (434)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 764
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.1e-15 Score=149.77 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=153.0
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
.+|.+||...... .....+...+..+.|||+ +..+++...+ +....|.+|++.. +... ....+......+.|
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~i~i~dl~t---g~~~-~l~~~~g~~~~~~w 255 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPD-GSKLAYVSFE--NKKSQLVVHDLRS---GARK-VVASFRGHNGAPAF 255 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCCccccceEcCC-CCEEEEEEec--CCCcEEEEEeCCC---CceE-EEecCCCccCceeE
Confidence 4899999865432 222223345889999999 4555543322 2245789999865 3322 22223334457899
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K 227 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~ 227 (434)
+|||+.|++..+.+ |...||.++..+.....++ ...+.+.+++|+|||+.+++.+ ..++...||++ .
T Consensus 256 SPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECC
Confidence 99999988754221 3345888887665433332 2345678899999999988754 34555666654 3
Q ss_pred ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 228 CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 228 ~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
+.....+.... ..+.|||||++|++++.+ .+.+||+.+++............+.|+|||++|++++. ++
T Consensus 325 ~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~----~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~------~g 393 (429)
T PRK01742 325 GGGASLVGGRG-YSAQISADGKTLVMINGD----NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST------QG 393 (429)
T ss_pred CCCeEEecCCC-CCccCCCCCCEEEEEcCC----CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc------CC
Confidence 33333232222 457899999999887642 47779998886443333333345889999999999998 88
Q ss_pred cEEEEee---cCceeeeee--cccceeeEEEcC
Q 013884 308 GIKIFHH---NGSLFFKKM--FDKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~---~g~~~~~~~--~~~~~~~~w~p~ 335 (434)
++.+|.+ +|+...... ...+...+|+|.
T Consensus 394 ~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 394 LGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 8777764 687766553 346788999986
No 112
>PTZ00420 coronin; Provisional
Probab=99.73 E-value=4.7e-15 Score=148.92 Aligned_cols=195 Identities=12% Similarity=0.156 Sum_probs=136.0
Q ss_pred EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCC-
Q 013884 108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT- 185 (434)
Q Consensus 108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~- 185 (434)
.|....++..+.+++|+... ..++.....|...+..+.|+|+ +..| +. +..|.+.+.| .+...+.
T Consensus 44 ~w~~~gGG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lL-AS--gS~DgtIrIW-------Di~t~~~~ 110 (568)
T PTZ00420 44 PWEVEGGGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEIL-AS--GSEDLTIRVW-------EIPHNDES 110 (568)
T ss_pred EEEcCCCCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEE-EE--EeCCCeEEEE-------ECCCCCcc
Confidence 45445567788999999876 5677778889999999999997 4543 32 3345555533 3321111
Q ss_pred ----ceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc-CCcCeeEEEECCCCCeEEEEecCC
Q 013884 186 ----HEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 186 ----~~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
...... ..+...|.+++|+|++..+++ +++.|+.|+|||++.. .+..+ +...+.++.|+|+|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--- 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--- 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---
Confidence 011111 235688999999999887654 5667899999999743 34444 457899999999999999887
Q ss_pred CCCeEEEEEccCCEEEEEeeCCCc---eE----EEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeee
Q 013884 259 LPGDMAFWDYVDGKQLGTTRAECS---VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFK 321 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~~~---~~----~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~ 321 (434)
.++.|+|||+++++.+..+.+|.- .. ..|++|+.+|++++.+.. .++.|+|||+. ++.+..
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVT 256 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEE
Confidence 456999999999998888877631 11 345799999999887210 02479999986 344443
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.1e-15 Score=148.13 Aligned_cols=247 Identities=12% Similarity=0.123 Sum_probs=157.6
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .....+...+....|||+ +..|++..... ....|.+|++.. +. ...++.+........|+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD-G~~lay~s~~~--g~~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPN-RQEITYMSYAN--GRPRVYLLDLET---GQ-RELVGNFPGMTFAPRFS 254 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCC-CCEEEEEEecC--CCCEEEEEECCC---Cc-EEEeecCCCcccCcEEC
Confidence 788888754332 223334456889999999 55665544332 236899999976 33 23444555566788999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.++..+.....++ ...+.....+|+|||+.+++.+... ...|.++|+.+.
T Consensus 255 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 255 PDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 9999987764321 3346888887765433332 2344567799999999999765321 237888898765
Q ss_pred eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
....+ +.+......|||||++|+....+.....|.+||+.++.............+.|||||++|+.++....-.-..
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 54444 3455677899999999998775433457899998665432222233445589999999999877621000002
Q ss_pred cEEEEeecCceeeeeec-ccceeeEEEcC
Q 013884 308 GIKIFHHNGSLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~~g~~~~~~~~-~~~~~~~w~p~ 335 (434)
.+.+.+++|........ ..+....|.|.
T Consensus 405 ~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 405 KLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCcccCCC
Confidence 57777877765443322 24566677664
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=3.6e-14 Score=133.50 Aligned_cols=296 Identities=13% Similarity=0.143 Sum_probs=196.1
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVY---QLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|....|.|.+ +.++|++ .+.+..|+.+.+.... .|... ++.-+.|++|.+||..+-.-+++.|.||+.
T Consensus 203 v~~a~FHPtd~nliit~G------k~H~~Fw~~~~~~l~k~~~~fek~--ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCG------KGHLYFWTLRGGSLVKRQGIFEKR--EKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEeccCCCcEEEEeC------CceEEEEEccCCceEEEeeccccc--cceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 5677899966 4555665 5789999999886544 33333 346688999999999887668899999998
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
...........|..+|.++..--+ +.++ +++.+..|.+|+ .+....+++..-. ....+..+.=+. +. |+
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~-Gtll------SGgKDRki~~Wd-~~y~k~r~~elPe-~~G~iRtv~e~~-~d-i~ 343 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRD-GTLL------SGGKDRKIILWD-DNYRKLRETELPE-QFGPIRTVAEGK-GD-IL 343 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecC-ccEe------ecCccceEEecc-ccccccccccCch-hcCCeeEEecCC-Cc-EE
Confidence 553322222355667877776655 2222 267888999999 3322122221111 112222332222 12 44
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-cCC
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS 236 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~~~ 236 (434)
+.++.. .|-.=.+.+.+. .+.+.+......++-+|+..+|+ ++..|+.+.||+ +.+.+.+ .-.
T Consensus 344 vGTtrN------------~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~--T~gqdk~v~lW~-~~k~~wt~~~~ 407 (626)
T KOG2106|consen 344 VGTTRN------------FILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLL--TCGQDKHVRLWN-DHKLEWTKIIE 407 (626)
T ss_pred Eeeccc------------eEEEeeecCCce-EEEEecccceeeEEcCCChhhee--eccCcceEEEcc-CCceeEEEEec
Confidence 433221 111112223322 22233455788999999999998 678899999999 4444433 346
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH- 314 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~- 314 (434)
.+..++.|.|.| .+++|. ..|...+.|.++...+...... ..+.+.+||||.+||.|+. ||.|.||.+
T Consensus 408 d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~------d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH------DNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC------CCeEEEEEEC
Confidence 788999999999 888777 6689999999987666554443 5566999999999999999 999999998
Q ss_pred -cCceeeee---ecccceeeEEEcCCCCCCCC
Q 013884 315 -NGSLFFKK---MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 315 -~g~~~~~~---~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|..+... +-..+..+.|+++...+.+.
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 45544332 22568889999998887765
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=8.5e-16 Score=149.24 Aligned_cols=312 Identities=13% Similarity=0.174 Sum_probs=196.9
Q ss_pred cceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCCc---------------------EEEEEe----e---cCcCCC
Q 013884 2 LLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETGE---------------------AVYQLF----Q---KNMTKT 50 (434)
Q Consensus 2 V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g~---------------------~~~~~~----~---~~~~~~ 50 (434)
|++|+|...|. +|++.+ +|..|+||.+.-+. .+..+. . ...|.+
T Consensus 194 Irsl~f~~~~~~~~~laS~S-----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSS-----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred hhhhhhhccCCCcEEEEecC-----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 56788876655 777777 89999999874322 011111 0 012446
Q ss_pred CCCeeeecCCCcEEEE-ecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884 51 TWPSIRFSSDEAVACR-MATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
-+.++.|+|++..|++ ..|+++.+|........-...+++ .+.....|+|+++..|+ .+.-|-.++
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~------~g~~Gg~hl 342 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA------HGRTGGFHL 342 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE------ecccCcEEE
Confidence 6778999999955544 578899999987643222222222 24667788988544443 244567889
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec--ceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG--ESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g--~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
|...+...-.+....++|-.++..+.|.|.|.+|+.. ..|++.+.++- .+.-| ++-.-|--|...+.+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~w-------HEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEW-------HEIARPQIHGYDLTC 412 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccce-------eeeccccccccccee
Confidence 9833211123444567888899999999999987653 35677665532 11100 000001112344556
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecc---------------------------------ceeE----------------
Q 013884 201 VQWSYSGSEFAVVYGFMPASATIFNKK---------------------------------CRPI---------------- 231 (434)
Q Consensus 201 ~~wspdg~~~av~~g~~~~~i~l~d~~---------------------------------~~~~---------------- 231 (434)
+++-+..-+|+ +|....-+++|+.- .+++
T Consensus 413 ~~~vn~~~~FV--SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 413 LSFVNEDLQFV--SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eehccCCceee--ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 66655333333 45544444555310 0000
Q ss_pred ----------------------------EEc--CCcCeeEEEECCCCCeEEEEecCC--CCCeEEEEEccCCEEEEEeeC
Q 013884 232 ----------------------------LEL--GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 232 ----------------------------~~~--~~~~~~~i~~sP~g~~l~~~~~~~--~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+.+ |...+.+++.||+|+++|++...+ ....|.+|++.+...+..+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 001 344577899999999999986543 246799999999888888888
Q ss_pred C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-------ecccceeeEEEcCCCCCCCC
Q 013884 280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-------MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-------~~~~~~~~~w~p~~~~~~~~ 342 (434)
| .++.++|||||+||++++- |+++.+|.......... +..-+|...|.|+..++++.
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred cceEEEEEEECCCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 7 5556999999999999999 99999999854433322 33358999999999886665
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.72 E-value=8.7e-17 Score=142.52 Aligned_cols=220 Identities=16% Similarity=0.273 Sum_probs=151.2
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|+...++-+||+||.++|+++ |-.|+|+|++..-. ...+.+ +-+++ ..+.
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermla---ks~~~e------m~~~~-------------~qa~------- 161 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLA---KSKPKE------MISGD-------------TQAR------- 161 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh---hcchhh------hccCC-------------cccC-------
Confidence 447777889999999999996 45999999875321 110000 01110 0000
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
...|+++.-|-.++..+.|+|....| .+...|.+.+ |+.+.-.........+....+|.++.|+|.
T Consensus 162 ----hPvIRTlYDH~devn~l~FHPre~IL---iS~srD~tvK-------lFDfsK~saKrA~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 162 ----HPVIRTLYDHVDEVNDLDFHPRETIL---ISGSRDNTVK-------LFDFSKTSAKRAFKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ----CceEeehhhccCcccceeecchhheE---EeccCCCeEE-------EEecccHHHHHHHHHhhccceeeeEeecCC
Confidence 12334444455677788889987653 3344666665 333321111111122333579999999999
Q ss_pred CCEEEEEEccCCCeEEEEeccceeEE------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C
Q 013884 207 GSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A 279 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~~~~~------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~ 279 (434)
|.++++ |.....+++||+.+-+-+ +.|++.++++.||+.|++.++|+ .+|.|+|||--+++++.++. +
T Consensus 228 Gefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 228 GEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred CceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec---cCCcEEeeccccHHHHHHHHhh
Confidence 998885 666679999999754433 33789999999999999999999 67899999988888887764 2
Q ss_pred C---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013884 280 E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK 321 (434)
Q Consensus 280 ~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~ 321 (434)
| .+....|+.+|+||++.+. |..+++|.+ +|+.+..
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKE 342 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEE
Confidence 3 4555899999999999999 999999998 5565544
No 117
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.7e-15 Score=141.98 Aligned_cols=303 Identities=16% Similarity=0.224 Sum_probs=172.8
Q ss_pred CcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884 26 KNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 26 ~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 104 (434)
..+.+|+...-. ....|.... .........+|++|+++|.+.+..+.|++..... .........+.++.+||. +.
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~-~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~-g~ 86 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNK-TSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELKKTYDLLFSPK-GN 86 (566)
T ss_pred ceeEEeccCCccccccccccCC-CCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccceeeeeeeccc-cc
Confidence 457888765422 223343321 0122346789999999999999999999988754 333333337889999998 66
Q ss_pred eEEEEecCCCCC-----CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc-------cccCceee
Q 013884 105 HVAVFVPESKGS-----PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-------DKTNQSYY 172 (434)
Q Consensus 105 ~ia~~~~~~~~~-----~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~-------d~~~~~~~ 172 (434)
++..|-+-.... .-.+.+|++.+ .........-....-.+.|++|....+.+++.++ +++...-.
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl 163 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL 163 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee
Confidence 676664432222 23567898866 2222211111111136677777665444432221 00000000
Q ss_pred cce--eEEEE--------------eeCCCceeeeecCC--C--------------CCeEEEEECcCCCEEEEEEc-cCCC
Q 013884 173 GES--KLNYL--------------TTDGTHEGLVPLRK--E--------------GPVHDVQWSYSGSEFAVVYG-FMPA 219 (434)
Q Consensus 173 g~~--~l~~l--------------~~~~~~~~~v~l~~--~--------------~~i~~~~wspdg~~~av~~g-~~~~ 219 (434)
... +.+.+ +..|. ...+.+-+ . ..--.+.|.+-|.-+.+++. +-|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGa-Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGA-PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCC-CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 000 00001 01111 01111000 0 00013556655554443322 1121
Q ss_pred ---------eEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEeeCCCceEEEE
Q 013884 220 ---------SATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW 287 (434)
Q Consensus 220 ---------~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~w 287 (434)
++.+++.+++. ...+ ..+||.++.|||+|+-+++ .|+ +...+.|+|++ ++.+..+....-.++-|
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr-~~~v~df~egpRN~~~f 319 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLR-GKPVFDFPEGPRNTAFF 319 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCC-CCEeEeCCCCCccceEE
Confidence 45555555322 3334 4899999999999986555 444 77899999985 56666666555567899
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|.|++|+.|+-. -| .|.+-|||+.. +++.......-.-+.|.|++..++.+
T Consensus 320 np~g~ii~lAGFG-NL--~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 320 NPHGNIILLAGFG-NL--PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred CCCCCEEEEeecC-CC--CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence 9999999999862 12 56899999955 45555556667778999999998876
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.6e-15 Score=145.60 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=153.9
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.|||...+.. +.+.... ..+..++|||||+.|++.. +..|.+|++.......... ....+..+.|||
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~~~~~~~SP 252 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSP 252 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCCcCCeEECC
Confidence 45899999765543 3333322 4455899999999998763 2489999987643211111 122355789999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++..... ....|.+|++.. + .+.+++........+.|+|||+.|++.... . +...||.+
T Consensus 253 D-G~~La~~~~~~--g~~~I~~~d~~t---g-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~----~-----g~~~Iy~~ 316 (429)
T PRK03629 253 D-GSKLAFALSKT--GSLNLYVMDLAS---G-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQ----A-----GRPQVYKV 316 (429)
T ss_pred C-CCEEEEEEcCC--CCcEEEEEECCC---C-CEEEccCCCCCcCceEECCCCCEEEEEeCC----C-----CCceEEEE
Confidence 9 45555433221 123588888865 3 334444445566789999999998776421 1 23358888
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecCC
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
+..++....+... .+.+..+.|||||+.++++.... ...+.+||+.+.....+.. .......|||||++|+.++.+.
T Consensus 317 d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 317 NINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC
Confidence 8776544444332 34456799999999998764332 2368889987665555532 2234688999999999988655
Q ss_pred CCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013884 259 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp 289 (434)
..+.+++++++.. ....+..+ .+...+|||
T Consensus 396 ~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 396 MGSVLNLVSTDGR-FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEEECCCC-CeEECccCCCCcCCcccCC
Confidence 4456888888544 33333332 455689998
No 119
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.4e-15 Score=145.57 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=155.5
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.+||.. |...+.+..+. ..+.+++|||||+.|++.. +..|.+|++..... .........+..+.|||
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC
Confidence 4589999975 44445554432 4556899999999998874 24899999876432 11111223456789999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
++ ..+++.... .....|.+|++.. ..+..++.+........|+|||+.|++.... . |...||.+
T Consensus 256 DG-~~la~~~~~--~g~~~Iy~~d~~~----~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~----~-----g~~~Iy~~ 319 (435)
T PRK05137 256 DG-RKVVMSLSQ--GGNTDIYTMDLRS----GTTTRLTDSPAIDTSPSYSPDGSQIVFESDR----S-----GSPQLYVM 319 (435)
T ss_pred CC-CEEEEEEec--CCCceEEEEECCC----CceEEccCCCCccCceeEcCCCCEEEEEECC----C-----CCCeEEEE
Confidence 94 445433222 2234567777755 2344455555556678999999998875321 1 33468888
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCC
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
+..+.....+... .+.+..+.|||||+.++++..... ..+.+||+.+.....+. ......+.|||||++|+......
T Consensus 320 d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 320 NADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred ECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence 8777655555432 455677899999999998653222 37888898665544442 23456789999999988866432
Q ss_pred CC---CeEEEEEccCCEEEEEeeCCCceEEEECCC
Q 013884 259 LP---GDMAFWDYVDGKQLGTTRAECSVTSEWSPD 290 (434)
Q Consensus 259 ~~---g~i~iwd~~~~~~i~~~~~~~~~~~~wspd 290 (434)
.. ..++++|+..+..........+...+|||-
T Consensus 399 ~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 22 478899987664432222224455889873
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=8.8e-16 Score=139.49 Aligned_cols=226 Identities=19% Similarity=0.306 Sum_probs=150.5
Q ss_pred CeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCC-------------CCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 92 GVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 92 ~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~-------------~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.++.+..++-++. +.++|. ..+.|.||++... +..+++.+...|+..-+.+.|||--...+
T Consensus 153 ~~NRvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccceeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4555666665433 344443 3368999997531 23677888888998999999999332211
Q ss_pred EEEEecccccCceeecceeEEEEeeC-CCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTD-GTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---- 230 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---- 230 (434)
. + .|.... +|+.... |.- +.+-...+...|.+++|||..+-++. +++-|+.|+|||++..+
T Consensus 228 l--s--GDc~~~-------I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 228 L--S--GDCVKG-------IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred c--c--Cccccc-------eEeeeeccCceeecCccccccccchhhhccCCccCceEE-eeecCceEEEEEecCCCccce
Confidence 1 1 222222 2222211 110 11111235788999999998765443 57779999999998552
Q ss_pred -EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884 231 -ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 231 -~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
...-|.+.||-|.|+-+-.+||+|+ .+|++.|||++.. +.+..+..| .+++++|+|....++.++..
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 2244888999999999988888887 6699999998854 567777766 67779999976655444443
Q ss_pred eCCcEEEEeecC--------------------ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884 305 IDNGIKIFHHNG--------------------SLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 305 ~D~~i~iw~~~g--------------------~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
|+.|.|||+.= +++|...- .++.++.|+++-|.++-.
T Consensus 369 -D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 369 -DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred -CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 99999999821 13343322 478899999999887754
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=4.1e-15 Score=138.25 Aligned_cols=248 Identities=13% Similarity=0.210 Sum_probs=166.3
Q ss_pred CCCCCCeeeecCCCc-EEEEec-CCeEEEEeCCCCCCce----------eeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884 48 TKTTWPSIRFSSDEA-VACRMA-TNEIQFFDTTDFPKGI----------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~~~~~~~~~----------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
|...+..+++-|... ++|+.. .+.|.|||........ ....|...=.+++|++.....++ +.+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll-----s~~ 197 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL-----SGS 197 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe-----ecc
Confidence 336677788888665 445444 4699999975432111 22333332455788887554544 467
Q ss_pred CCceEEEEEcCCCCC----CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-Cceeee
Q 013884 116 SPASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLV 190 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~----~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v 190 (434)
.++.|++|++..... ..+......|...+-.++|++....|+..+.. |. .|.++++.. ......
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d--d~---------~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD--DG---------KLMIWDTRSNTSKPSH 266 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC--CC---------eEEEEEcCCCCCCCcc
Confidence 788999999986432 22334455667777888999988877554322 22 133333332 112222
Q ss_pred -ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013884 191 -PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA 264 (434)
Q Consensus 191 -~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~ 264 (434)
.-.+.++|++++|+|-+.. ++++|+.|++|.|||+| +.+++.+ |...|.++.|||+-. .|+++| .++.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 2235899999999996643 33489999999999997 4566666 789999999999876 666666 567999
Q ss_pred EEEccCC--------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 265 FWDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 265 iwd~~~~--------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
+||+..- +++....+| .+..+.|+|....++..... ||.++||.+...+..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-----DN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-----DNILQIWQMAENIYN 409 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----CceEEEeeccccccC
Confidence 9998732 234555556 56679999999877665554 999999998766543
No 122
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=8.3e-16 Score=137.03 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=183.6
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce--------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI--------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
.-+.|.+|||||+||+++ .|+-|.||+..++.... ..-...+.|.++.||-| ..++| ++.+++.|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlA-----sGsqDGkI 287 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLA-----SGSQDGKI 287 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhh-----ccCcCCcE
Confidence 344588999999999999 58899999976543111 11223446888888887 34444 57889999
Q ss_pred EEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCe
Q 013884 121 QIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPV 198 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i 198 (434)
++|.+.+ +++++... .|...++++.|+.|+..++.. ..|.+.+ +|-+. .+ .+...+ .+...|
T Consensus 288 KvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvR-------iHGlK--SG-K~LKEfrGHsSyv 351 (508)
T KOG0275|consen 288 KVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVR-------IHGLK--SG-KCLKEFRGHSSYV 351 (508)
T ss_pred EEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEE-------Eeccc--cc-hhHHHhcCccccc
Confidence 9999988 78877665 677889999999999987542 3454443 22221 11 111111 236788
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCE
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~----~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+.+.|++||..++ +.+.|+++++|+.+ ++.+.+| ...++|++..-|.. ..++++...| +|+|.++. |.
T Consensus 352 n~a~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~q-GQ 425 (508)
T KOG0275|consen 352 NEATFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQ-GQ 425 (508)
T ss_pred cceEEcCCCCeEE--EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEecc-ce
Confidence 9999999999988 67789999999986 4445555 35678888887755 5777777555 89999885 45
Q ss_pred EEEEeeC-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcCCCCCCCC
Q 013884 273 QLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 273 ~i~~~~~-----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~~~~~~~~ 342 (434)
.+..+.. .+.+.+..||.|+++...+. |+.++.|.+ +|++-...+. ..+..+.-+|....+.+.
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigE------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGE------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEcc------CcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 6665543 36677899999999999999 999999998 5665544433 346677777776555544
No 123
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=9.7e-14 Score=133.39 Aligned_cols=263 Identities=10% Similarity=0.069 Sum_probs=159.6
Q ss_pred CCCcEEEEEcCC-Cc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeeec-CCeeEE
Q 013884 24 QEKNVILWKTET-GE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLRV-PGVAAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~-g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~~-~~v~~~ 96 (434)
.++.|.+||+.+ |+ .+..+... .....+.++||+++|+.+ .++.|.+|++...... ....... .....+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecC----CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 579999999964 43 44554332 233368999999988765 3579999998632211 1122222 245678
Q ss_pred EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013884 97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~ 175 (434)
.++|++...++. . ...+.|.+|++.... ....+.... .......+.++|+|+++++... +..
T Consensus 86 ~~~~~g~~l~v~-~----~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~-----------~~~ 148 (330)
T PRK11028 86 STDHQGRFLFSA-S----YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL-----------KED 148 (330)
T ss_pred EECCCCCEEEEE-E----cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC-----------CCC
Confidence 999985433322 1 124689999986421 011222111 1223456789999998866421 112
Q ss_pred eEEEEeeCC--Cce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----eeEEEcCC------c-
Q 013884 176 KLNYLTTDG--THE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILELGS------G- 237 (434)
Q Consensus 176 ~l~~l~~~~--~~~----~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-----~~~~~~~~------~- 237 (434)
.+..+++.. ... ..+.+......+.++|+|||++++++ ...++.|.+||++. ..+.++.. +
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 233343322 110 11122223445789999999998875 44467999999852 12222211 1
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
....+.++|+|++|+++..+ .+.|.+|+++.. +.+..... .....+.++|||++|+++... +++|.|
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-----~~~v~v 300 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-----SHHISV 300 (330)
T ss_pred ccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-----CCcEEE
Confidence 12358899999999988532 369999998543 23333322 245569999999999998764 899999
Q ss_pred Eeec
Q 013884 312 FHHN 315 (434)
Q Consensus 312 w~~~ 315 (434)
|+++
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9984
No 124
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=4.3e-15 Score=147.57 Aligned_cols=249 Identities=14% Similarity=0.145 Sum_probs=150.5
Q ss_pred CcEEEEEe-cCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCcee
Q 013884 11 GLIIQTFQ-KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGIL 85 (434)
Q Consensus 11 g~~L~t~~-~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~ 85 (434)
++.|+... +..+..+..|+|||...+. .+.+..+. ..+..++|||||+.|++... .+|.+||+........
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l 243 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFN-QFIVNRSS---QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV 243 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCC-ceEeccCC---CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence 34454333 2223346789999975444 44444332 44568999999999988742 3799999876432111
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
... ......+.|||+ +..+++..... + ...|.+|++.. ..+...+.+......+.|+|||+.|++.... +
T Consensus 244 ~~~-~g~~~~~~wSPD-G~~La~~~~~~-g-~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~ 313 (429)
T PRK01742 244 ASF-RGHNGAPAFSPD-GSRLAFASSKD-G-VLNIYVMGANG----GTPSQLTSGAGNNTEPSWSPDGQSILFTSDR--S 313 (429)
T ss_pred ecC-CCccCceeECCC-CCEEEEEEecC-C-cEEEEEEECCC----CCeEeeccCCCCcCCEEECCCCCEEEEEECC--C
Confidence 111 123456899999 45555433211 1 12344445543 3345555566667789999999998775321 1
Q ss_pred ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEE
Q 013884 166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRW 244 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~ 244 (434)
|...||.++..+.....+ ...+ ...+|||||+.+++..+ + .+.+||+.......+ .......+.|
T Consensus 314 -------g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~--~-~i~~~Dl~~g~~~~lt~~~~~~~~~~ 379 (429)
T PRK01742 314 -------GSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMING--D-NVVKQDLTSGSTEVLSSTFLDESPSI 379 (429)
T ss_pred -------CCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcC--C-CEEEEECCCCCeEEecCCCCCCCceE
Confidence 233578777665533333 2233 46789999999987543 3 566689865433332 2223456889
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEc--cCCEEEEEeeCC--CceEEEECCC
Q 013884 245 NPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLGTTRAE--CSVTSEWSPD 290 (434)
Q Consensus 245 sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~~~~~~--~~~~~~wspd 290 (434)
+|||++|+.++.+ |.+.+|++ .+++.+..+.++ .+..++|||-
T Consensus 380 sPdG~~i~~~s~~---g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 380 SPNGIMIIYSSTQ---GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCEEEEEEcC---CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999998843 45566654 245566666544 3456899984
No 125
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.69 E-value=6.6e-15 Score=133.97 Aligned_cols=269 Identities=14% Similarity=0.182 Sum_probs=177.6
Q ss_pred CCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 52 WPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 52 ~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
+.+++-+ ++++.++ .||.++||+...... .....|...|.+++|--. +..-+.|+ +.+.+.++++|.......
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~Gk~~-~~~~Ght~~ik~v~~v~~-n~~~~~fv--sas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLKGKSI-KTIVGHTGPIKSVAWVIK-NSSSCLFV--SASMDQTLRLWKWNVGEN 181 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecCCceE-EEEecCCcceeeeEEEec-CCccceEE--EecCCceEEEEEecCchh
Confidence 3344444 6777777 689999999876332 344556667777766543 22111222 235677888888765321
Q ss_pred -CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc----eeEEEEee-----------CCCceeeeecC-
Q 013884 131 -SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE----SKLNYLTT-----------DGTHEGLVPLR- 193 (434)
Q Consensus 131 -~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~----~~l~~l~~-----------~~~~~~~v~l~- 193 (434)
...+....+|+..+-++.-+++|..++ +...|.+.+.|.-+ ..+.-... .+.....+.+.
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 223334448999999999999999853 34467777766411 11111111 11222333443
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEE-cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~-~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
|.++|.++.|++.+ .++ +++.|.+|+.||+.... +.. ......+++.++|..++|++|+.+ ..|++||.+++
T Consensus 259 Ht~~Vs~V~w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd---r~irl~DPR~~ 332 (423)
T KOG0313|consen 259 HTEPVSSVVWSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD---RHIRLWDPRTG 332 (423)
T ss_pred cccceeeEEEcCCC-ceE--eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC---CceeecCCCCC
Confidence 67899999999843 333 57889999999997443 333 367889999999999999999854 59999998765
Q ss_pred ---EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecCc--eeeee--ecccceeeEEEcCCCCCCC
Q 013884 272 ---KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGS--LFFKK--MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 272 ---~~i~~~~~~--~~~~~~wspdg~~l~-tas~~~rl~~D~~i~iw~~~g~--~~~~~--~~~~~~~~~w~p~~~~~~~ 341 (434)
-....+.+| .+..+.|+|...+++ ++++ ||++++||+... .+|.. +-+.++.+.|.-. ..+.+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~------D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvS 405 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY------DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVS 405 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEec------CCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEe
Confidence 234555666 556699999888755 5555 999999999443 56665 4578999999753 34444
Q ss_pred C
Q 013884 342 D 342 (434)
Q Consensus 342 ~ 342 (434)
.
T Consensus 406 G 406 (423)
T KOG0313|consen 406 G 406 (423)
T ss_pred c
Confidence 4
No 126
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2e-14 Score=143.01 Aligned_cols=242 Identities=12% Similarity=0.104 Sum_probs=153.6
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.|||...+ ..+.+.... ..+..+.|||||+.|++... ..|.+|++....... ..........+.|||
T Consensus 183 ~~~l~i~D~~g~-~~~~lt~~~---~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 183 RYALQVADSDGY-NPQTILRSA---EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP 257 (433)
T ss_pred eEEEEEECCCCC-CceEeecCC---CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence 457999997544 444444332 44558999999999988742 379999987643211 111112234689999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++..... ....|.+|++.. +. +..++.+......+.|+|||+.|++... .. |...||.+
T Consensus 258 D-G~~l~~~~s~~--g~~~Iy~~d~~~---g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd----~~-----g~~~iy~~ 321 (433)
T PRK04922 258 D-GRRLALTLSRD--GNPEIYVMDLGS---RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSD----RG-----GRPQIYRV 321 (433)
T ss_pred C-CCEEEEEEeCC--CCceEEEEECCC---CC-eEECccCCCCccceEECCCCCEEEEEEC----CC-----CCceEEEE
Confidence 9 45454432221 235788888865 32 3444444445567899999999877632 11 23458888
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecCC
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
+..+....+++.. ......++|||||+.+++...... ..|.+||+.+.....+.. .......|||||++|+......
T Consensus 322 dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 322 AASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC
Confidence 8766544445432 234557899999999998654321 268999987655555532 2345679999999988877544
Q ss_pred CCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884 259 LPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
..+.|+++|+.... ...+.. ..+...+|||
T Consensus 401 g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 401 GRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence 45679999986543 333322 2455688987
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=8.9e-15 Score=137.17 Aligned_cols=285 Identities=10% Similarity=0.106 Sum_probs=186.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp 100 (434)
...++|||+..-+....|.+.... -++.++.|+....+++.. ++..+++|.-.... .....+...+.-.+++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCC-CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 467999999776555455443222 235588999877543332 34578888754421 1111222222111111111
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
. ..+++ ++|..+.|+||++.. ...++.+..|+..+..+.+|-...+|+.... -|+.-||-+
T Consensus 90 ~-S~y~~-----sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~----------gGdiiih~~ 150 (673)
T KOG4378|consen 90 Q-SLYEI-----SGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSD----------GGDIIIHGT 150 (673)
T ss_pred c-ceeee-----ccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEecc----------CCcEEEEec
Confidence 1 11111 467888999999976 6666777778888899999998888765421 133333333
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECCCCC-eEEEEe
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAG 255 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP~g~-~l~~~~ 255 (434)
...- ....+..+....|.-+.+||..+.+.++. +.+|.|++||+.+. +++.+ |..|...|+|||... +|++.|
T Consensus 151 ~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 151 KTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred ccCc-cccceecCCCCeEEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 2211 12223333345667899999888887764 45899999999754 45544 788999999999765 666778
Q ss_pred cCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--eeecccceee
Q 013884 256 FGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--KKMFDKLFQA 330 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~--~~--~~~~~~~~~~ 330 (434)
. |-.|.+||....+....+.. +..+.++|+++|.+|+.|+. .|.|..||+.+.. +. ..+...+..+
T Consensus 229 ~---Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 229 Y---DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred c---cceEEEeecccccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEE
Confidence 4 45999999998776665544 35566999999999999999 9999999997752 22 2344569999
Q ss_pred EEEcCCCCCCC
Q 013884 331 EWKPVSPDKFG 341 (434)
Q Consensus 331 ~w~p~~~~~~~ 341 (434)
+|+|-+ .++.
T Consensus 300 afq~s~-tvlt 309 (673)
T KOG4378|consen 300 AFQPSP-TVLT 309 (673)
T ss_pred Eeeecc-eeee
Confidence 999987 4443
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-13 Score=137.04 Aligned_cols=284 Identities=13% Similarity=0.171 Sum_probs=166.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEE--eCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFF--DTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~--~~~ 78 (434)
|++++|.-||++++..+. ..+.+.+||++..+.+.....- |...++...|-+..-.+++. .||.+++| |..
T Consensus 247 VtslSFrtDG~p~las~~----~~G~m~~wDLe~kkl~~v~~na--h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGR----SNGDMAFWDLEKKKLINVTRNA--HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred eeEEEeccCCCeeEEecc----CCceEEEEEcCCCeeeeeeecc--ccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 789999999999887663 3578999999887765554322 33677788898888888876 46665555 533
Q ss_pred CCCC--ceeeeeecCCeeEEEE---------eCCCCCeEEEE--------------------------------------
Q 013884 79 DFPK--GILYRLRVPGVAAFEV---------SKAPGSHVAVF-------------------------------------- 109 (434)
Q Consensus 79 ~~~~--~~~~~~~~~~v~~~~~---------sp~~~~~ia~~-------------------------------------- 109 (434)
++.. ......|......+.+ |...+..+-.|
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 3211 0011111111111111 11101111000
Q ss_pred -ecCC------------CCCCceEEEEEcCCCCCCCceeeee-e--cccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884 110 -VPES------------KGSPASVQIYACGKDLQSQPLARRS-F--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 110 -~~~~------------~~~~~~v~i~~~~~~~~~~~i~~~~-~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g 173 (434)
..+. .-....++.|++.+...++-+.... + ......+++-++.|++.++..+. |
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----------G 470 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----------G 470 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC----------C
Confidence 0000 0011245566665432111111111 0 12344556666677765554322 2
Q ss_pred ceeEEEEeeCCCceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---------------------
Q 013884 174 ESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--------------------- 230 (434)
Q Consensus 174 ~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--------------------- 230 (434)
...+|.+.. |.+.... .-.+.++|.+++..-.++.++ +++-+|.+.+||.+...
T Consensus 471 ~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~v--sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 471 TIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLV--SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred eEEEEEccc-CeeecccccCccccCceeEEEecCCCceEE--EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 222333321 1111111 113478888888876555555 56667888888754221
Q ss_pred ---------------------EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEE
Q 013884 231 ---------------------ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE 286 (434)
Q Consensus 231 ---------------------~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~ 286 (434)
++.| |...+|.+.|||||++|++++ +|++|++||+-++.+|-.+.-. ..+.+.
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~~lID~~~vd~~~~sls 624 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTGTLIDGLLVDSPCTSLS 624 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCcceeeeEecCCcceeeE
Confidence 1112 677899999999999999999 7789999999999988777554 445599
Q ss_pred ECCCCCEEEEEEcCCceeeC-CcEEEEe
Q 013884 287 WSPDGRYFMTATTAPRLQID-NGIKIFH 313 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D-~~i~iw~ 313 (434)
+||.|.+|||+.. | ++|++|.
T Consensus 625 ~SPngD~LAT~Hv------d~~gIylWs 646 (910)
T KOG1539|consen 625 FSPNGDFLATVHV------DQNGIYLWS 646 (910)
T ss_pred ECCCCCEEEEEEe------cCceEEEEE
Confidence 9999999999998 6 9999997
No 129
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=8.8e-14 Score=137.57 Aligned_cols=264 Identities=9% Similarity=0.015 Sum_probs=156.0
Q ss_pred CcEEEEEecCCC-CC---CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec--C--CeEEEEeCCCC
Q 013884 11 GLIIQTFQKSST-PQ---EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA--T--NEIQFFDTTDF 80 (434)
Q Consensus 11 g~~L~t~~~~~~-~~---d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~--~--~~i~v~~~~~~ 80 (434)
++.++....... .. ...|.+.|...+.. +.+.... .....++|||||+. ++..+ + .+|.+.++...
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~-~~lt~~~---~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g 221 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNL-RPLTQEH---SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP 221 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCc-eEcccCC---CCcccceEccCCCceEEEEEEccCCCceEEEEECCCC
Confidence 566665543211 11 34788888765543 4444332 23347899999975 32232 2 37888888765
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~ 159 (434)
.......+ ........|||| +..|++.....+...-.+.+|++.... .....+++.. ........|+|||+.|++.
T Consensus 222 ~~~~lt~~-~g~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 222 AGKKILAL-QGNQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred CceEeecC-CCCccceEECCC-CCEEEEEECCCCCcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 43221111 223456899999 556665443333333344556665421 1122223322 2334578999999998876
Q ss_pred EEecccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcC-
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG- 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~- 235 (434)
... . |...||.+++.+. ....++ ...+.+...+|||||+.++++.... ...|.+||+.+.....+.
T Consensus 299 s~~----~-----g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~ 368 (428)
T PRK01029 299 SNK----D-----GRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT 368 (428)
T ss_pred ECC----C-----CCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence 422 1 3335777766432 122222 2235677899999999999864332 237999999766655553
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013884 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG 291 (434)
Q Consensus 236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg 291 (434)
...+....|+|||++|+.....+..+.|+++|+.+++........ .....+|||-.
T Consensus 369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 235577999999999887655444578999999887654444333 34558999854
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=1e-13 Score=130.45 Aligned_cols=264 Identities=16% Similarity=0.207 Sum_probs=168.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.|++|.++|..+ |.. .+++|.||+..+.+..++... |..++-++.--.||.+|..+-|..|..|| .+..
T Consensus 249 Vl~v~F~engdvi-TgD-----S~G~i~Iw~~~~~~~~k~~~a---H~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~ 318 (626)
T KOG2106|consen 249 VLCVTFLENGDVI-TGD-----SGGNILIWSKGTNRISKQVHA---HDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYR 318 (626)
T ss_pred EEEEEEcCCCCEE-eec-----CCceEEEEeCCCceEEeEeee---cCCceEEEEEecCccEeecCccceEEecc-cccc
Confidence 7899999999877 444 689999999866665555543 33677688888999999844567999999 3333
Q ss_pred Cceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 82 KGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 82 ~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
+.....+. ...|+.+ .++...++ + -.+ .+.|--=.+.+ .--.....|..+.-.++-+|+...++.+
T Consensus 319 k~r~~elPe~~G~iRtv--~e~~~di~-v--GTt---rN~iL~Gt~~~----~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTV--AEGKGDIL-V--GTT---RNFILQGTLEN----GFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred ccccccCchhcCCeeEE--ecCCCcEE-E--eec---cceEEEeeecC----CceEEEEecccceeeEEcCCChhheeec
Confidence 32222222 1234433 23322211 1 000 01111111111 1111122344455566667776655433
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC--Cc
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--SG 237 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~--~~ 237 (434)
. .|+....|... ....+...+.++.++.|+|.| .+| .|...+...++|.+...+.+++ ..
T Consensus 387 g---qdk~v~lW~~~------------k~~wt~~~~d~~~~~~fhpsg-~va--~Gt~~G~w~V~d~e~~~lv~~~~d~~ 448 (626)
T KOG2106|consen 387 G---QDKHVRLWNDH------------KLEWTKIIEDPAECADFHPSG-VVA--VGTATGRWFVLDTETQDLVTIHTDNE 448 (626)
T ss_pred c---CcceEEEccCC------------ceeEEEEecCceeEeeccCcc-eEE--EeeccceEEEEecccceeEEEEecCC
Confidence 2 34444333211 111111126789999999999 666 4787889999999877666653 78
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+++.++|||+|.+||+|+.++ .|+||-++.. ..+....+..++.+.||+|++||.+-+- |-.|..|.
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~ 519 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWK 519 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEc
Confidence 899999999999999999555 9999987633 3444555556777999999999999998 99999994
Q ss_pred e
Q 013884 314 H 314 (434)
Q Consensus 314 ~ 314 (434)
-
T Consensus 520 ~ 520 (626)
T KOG2106|consen 520 P 520 (626)
T ss_pred c
Confidence 3
No 131
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5e-14 Score=139.83 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=151.0
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .........+.++.|||+ +..+++...+ .....|.+|++.. +.. .....+........|+
T Consensus 177 ~L~~~D~dG~~~-~~l~~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 177 QLQISDADGQNA-QSALSSPEPIISPAWSPD-GTKLAYVSFE--SKKPVVYVHDLAT---GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred EEEEECCCCCCc-eEeccCCCCcccceEcCC-CCEEEEEEcc--CCCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence 777877644221 222223446788999999 4556554332 2234689999876 333 2333344455688999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eeccc
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l--~d~~~ 228 (434)
|||+.|++..+.+ |...||.++..+.....+. ...+.+.+..|+|||+++++.+ ...+...| +++.+
T Consensus 249 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 249 PDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASG 317 (427)
T ss_pred CCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCC
Confidence 9999987754321 3346888877665333322 2234556789999999998753 33344444 45544
Q ss_pred eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884 229 RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
.... .++........|||||++|+..+..+....|++||+.+++............+.|+|||++|+.++.. .
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~-----~ 392 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ-----G 392 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec-----C
Confidence 3322 23333344689999999999876443334799999988765443333334458999999999999872 2
Q ss_pred C--cEEEEeecCceeeee--ecccceeeEEEcC
Q 013884 307 N--GIKIFHHNGSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 307 ~--~i~iw~~~g~~~~~~--~~~~~~~~~w~p~ 335 (434)
+ .+.+-+.+|...... ...++...+|+|.
T Consensus 393 g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 2 255556678765544 3357788888875
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6e-15 Score=137.31 Aligned_cols=264 Identities=13% Similarity=0.137 Sum_probs=181.3
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|.|.-.+|.++ .|++++||.+..........+++. .|....|+|++...+++ .+....+..|++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~-----s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT-----SGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe-----cccceEEEEeecc
Confidence 678899999999888776 578999999876443333444443 58889999985434432 3445578889987
Q ss_pred CCCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884 127 KDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp 205 (434)
... -..+...... ....-.+..++++++|++.. ..+ -|+++..... +-...+..+|.|.+++|+.
T Consensus 289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-----~~G-------~I~lLhakT~-eli~s~KieG~v~~~~fsS 354 (514)
T KOG2055|consen 289 TAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-----NNG-------HIHLLHAKTK-ELITSFKIEGVVSDFTFSS 354 (514)
T ss_pred ccc-cccccCCCCcccchhheeEecCCCCeEEEcc-----cCc-------eEEeehhhhh-hhhheeeeccEEeeEEEec
Confidence 622 1112211111 12334577899999877642 111 2666655443 3333444589999999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE
Q 013884 206 SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG 275 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~ 275 (434)
||+.+.++. .++.|.+||++.. .++.+ +.-.-++++.|++|.|||+|+ ..|-|.|||.++. +.+.
T Consensus 355 dsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 355 DSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchh
Confidence 999888643 3679999999754 34444 223346799999999999998 6789999997653 3444
Q ss_pred EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee------ecccceeeEEEcCCCCCCC
Q 013884 276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~------~~~~~~~~~w~p~~~~~~~ 341 (434)
.+..- .++.+.|+||++.|+.++. .+++.+|+-|+-...++.. ....+.+++|+|.+-.+.-
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 43322 5566999999999999887 3489999999977766653 3457899999997655443
No 133
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=9.9e-15 Score=145.30 Aligned_cols=260 Identities=11% Similarity=0.109 Sum_probs=193.5
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+..+.|.|.--++.++ .++.|++||..=........-|...|+.+.|+|. .+++. ++|.+-.|++|++.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFV-----SGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFV-----SGGDDYKIKVWNYKT- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEE-----ecCCccEEEEEeccc-
Confidence 456678999988877776 6789999997543333344556677999999998 44433 468888999999998
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~ 208 (434)
.+.+.++..|-.-+..+.|++.=-+|+.. ..|++++.|. + .....-.+-..|.-.|.+.+|+|...
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWN-------w--qsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWN-------W--QSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEe-------c--cCCceEEEEecCceEEEeeccCCccc
Confidence 89999999999999999999987776543 3577777542 2 12111122233577889999999887
Q ss_pred EEEEEEccCCCeEEEEeccce----------------------------e----EEEcCCcCeeEEEECCCCCeEEEEec
Q 013884 209 EFAVVYGFMPASATIFNKKCR----------------------------P----ILELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~~~----------------------------~----~~~~~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
.++ +++-|.+|++||+.+- . +.+-|...||-++|+|.--+|++|+.
T Consensus 149 lIV--SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 149 LIV--SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred eEE--EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 777 7888999999996310 0 11226778999999999999999984
Q ss_pred CCCCCeEEEEEccCCE--EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---eeeeeccccee
Q 013884 257 GNLPGDMAFWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQ 329 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~--~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~---~~~~~~~~~~~ 329 (434)
|..|++|-++.-+ .+-+..+| +++++-|+|....|++.+. |.+|+|||++.+. .+...-+++|.
T Consensus 227 ---DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE------DksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 227 ---DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE------DKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred ---cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC------CccEEEEecccccceeeeeccCCeEEE
Confidence 4599999876443 34444555 7778999999999999999 9999999997653 34446678999
Q ss_pred eEEEcCCCCCCCC
Q 013884 330 AEWKPVSPDKFGD 342 (434)
Q Consensus 330 ~~w~p~~~~~~~~ 342 (434)
++=+|.. .+|.+
T Consensus 298 laahP~l-NLfAA 309 (1202)
T KOG0292|consen 298 LAAHPEL-NLFAA 309 (1202)
T ss_pred EEecCCc-ceeee
Confidence 9999874 34443
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.6e-16 Score=159.06 Aligned_cols=283 Identities=15% Similarity=0.256 Sum_probs=193.6
Q ss_pred eEEecCCCc-EEEEEecC---CC--CCCCcEEEEEcC--CCc----EEEEEeecCcCCCCCCeeeecCCCcE----EEEe
Q 013884 4 LLTCLRVGL-IIQTFQKS---ST--PQEKNVILWKTE--TGE----AVYQLFQKNMTKTTWPSIRFSSDEAV----ACRM 67 (434)
Q Consensus 4 ~l~fSP~g~-~L~t~~~~---~~--~~d~~v~iWd~~--~g~----~~~~~~~~~~~~~~~~~~~~S~d~~~----la~~ 67 (434)
.++|||++. ||+++... .. +.+.++-||.+. +.+ .+.++... ..+..++|++.+.. +|.+
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeecccCCCccceeecc
Confidence 368999997 66654421 11 235677777653 332 23333322 56668999997765 6666
Q ss_pred -cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eee
Q 013884 68 -ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSF 139 (434)
Q Consensus 68 -~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~ 139 (434)
.||.|.+|+..... .......|...|..+.|.+..++.+| +++.++.|.|||+.+. ..+..- ...
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~--~tP~~~~~~~ 159 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKP--ETPFTPGSQA 159 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee-----ccCCCCcEEEeccCCc--CCCCCCCCCC
Confidence 57899999986531 11223445667999999999777887 6788899999999874 222222 222
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC---CCCeEEEEECcCCC-EEEEEEc
Q 013884 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGS-EFAVVYG 215 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i~~~~wspdg~-~~av~~g 215 (434)
...++.+++||..-.+|+..++. .|...+|.+.. . ...+.+.. ...++.++|+|+.. ++++.++
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~---------sg~~~iWDlr~--~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSP---------SGRAVIWDLRK--K-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CcccceEeccchhhhHHhhccCC---------CCCceeccccC--C-CcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 55688899999988887654322 13334555532 2 33444443 24488999999875 5555444
Q ss_pred cCCC--eEEEEeccc--eeEE--EcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013884 216 FMPA--SATIFNKKC--RPIL--ELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE 286 (434)
Q Consensus 216 ~~~~--~i~l~d~~~--~~~~--~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ 286 (434)
.|+ .|.+||+|. .++. +.|...+.++.|++.+ ++|+++|. |+.|.+|+.++++.+..+... +...+.
T Consensus 228 -dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 228 -DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred -CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC---CCCeeEecCCCceEeeecCCCCcceeeee
Confidence 344 899999873 3333 4588899999999988 78888884 459999999999999998764 566699
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
|+|..-.++.+.+. ||.|-|+.+.|..
T Consensus 304 w~pr~P~~~A~asf-----dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASF-----DGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhhee-----ccceeeeeeecCC
Confidence 99998855555553 9999999997764
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.2e-15 Score=126.91 Aligned_cols=235 Identities=12% Similarity=0.141 Sum_probs=154.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~ 75 (434)
|..+...--|+.|+|++ .|+.|+|+.+.+. +.+.++.+++ ..+-.+.|.. -|.+||++ .|+.|.||
T Consensus 14 IHda~lDyygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhHhhhhhhcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceEEEE
Confidence 33444455699999999 8999999999754 3455666654 4444899987 89999998 57899999
Q ss_pred eCCCCC--CceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+-.+.. +......|...|++++|.|..-. ++++- +.|
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca----------------------------------------sSD 125 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA----------------------------------------SSD 125 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEe----------------------------------------eCC
Confidence 976642 22333445556677777665211 11110 112
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeeecCCCCCeEEEEECcC---C-----------CEEEEEEccC
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYS---G-----------SEFAVVYGFM 217 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~l~~~~~i~~~~wspd---g-----------~~~av~~g~~ 217 (434)
|+. .+..++.. +-....+...++-.|++++|.|. | ++|+ +|.+
T Consensus 126 G~v--------------------svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGc 183 (299)
T KOG1332|consen 126 GKV--------------------SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGC 183 (299)
T ss_pred CcE--------------------EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee--ccCC
Confidence 221 12222222 11122333345678899999986 4 4577 7999
Q ss_pred CCeEEEEeccce-----eEEEcCCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCc
Q 013884 218 PASATIFNKKCR-----PILELGSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS 282 (434)
Q Consensus 218 ~~~i~l~d~~~~-----~~~~~~~~~~~~i~~sP~g----~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~ 282 (434)
|..|+||+.... ....-|.+-+..++|.|.- .+|++++ .+|++.||-.+.- +++..+.. .+
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~~-~~ 259 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS---QDGTVIIWTKDEEYEPWKKTLLEEFPD-VV 259 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec---CCCcEEEEEecCccCcccccccccCCc-ce
Confidence 999999987542 2223378899999999964 3778787 7789999976521 12222211 34
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
..+.||+.|..|+++.. ||.|.+|.-+.
T Consensus 260 w~vSWS~sGn~LaVs~G------dNkvtlwke~~ 287 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGG------DNKVTLWKENV 287 (299)
T ss_pred EEEEEeccccEEEEecC------CcEEEEEEeCC
Confidence 55999999999999999 99999998543
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=132.29 Aligned_cols=230 Identities=13% Similarity=0.267 Sum_probs=150.8
Q ss_pred eEEecC--CCcEEEEEecCCCCCCCcEEEEEcCC----------------CcEEEEEeecCcCCCCCCeeeecC--CCcE
Q 013884 4 LLTCLR--VGLIIQTFQKSSTPQEKNVILWKTET----------------GEAVYQLFQKNMTKTTWPSIRFSS--DEAV 63 (434)
Q Consensus 4 ~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~----------------g~~~~~~~~~~~~~~~~~~~~~S~--d~~~ 63 (434)
.+.-+| +..++++|+ +.+.|.||++.. .+++.++..+.. .++ .+.||| .|.
T Consensus 156 Rvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy-~LdWSp~~~g~- 226 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGY-GLDWSPIKTGR- 226 (440)
T ss_pred eeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cce-eeecccccccc-
Confidence 344444 446888998 789999999832 234667766643 777 899999 333
Q ss_pred EEEe-cCCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013884 64 ACRM-ATNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 64 la~~-~~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
|+++ ..+.|++|...+..-. .....|...|.++.|||.....++ +.+.++.|+||++... .
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-----ScS~DgsIrIWDiRs~---~------- 291 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-----SCSCDGSIRIWDIRSG---P------- 291 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEE-----eeecCceEEEEEecCC---C-------
Confidence 3344 3469999998764311 112335667888999998766666 3566788999998661 1
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
.-..+++ .. +++.|+.+.|+..-..|| +|..+|
T Consensus 292 ------------~~~~~~~-------------------------kA--------h~sDVNVISWnr~~~lLa--sG~DdG 324 (440)
T KOG0302|consen 292 ------------KKAAVST-------------------------KA--------HNSDVNVISWNRREPLLA--SGGDDG 324 (440)
T ss_pred ------------ccceeEe-------------------------ec--------cCCceeeEEccCCcceee--ecCCCc
Confidence 1011100 11 156788899987776555 799999
Q ss_pred eEEEEeccc----eeE--EEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------EE
Q 013884 220 SATIFNKKC----RPI--LELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------KQ 273 (434)
Q Consensus 220 ~i~l~d~~~----~~~--~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------~~ 273 (434)
.+.|||++. .++ +.+|+.+|++|.|+|+.. .|+++|.|+ +|.|||+.-- ++
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~---QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL 401 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN---QITIWDLSVEADEEEIDQEAAEGLQDLPPQL 401 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC---cEEEEEeeccCChhhhccccccchhcCCcee
Confidence 999999973 333 455999999999999875 566666454 9999997621 12
Q ss_pred EEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 274 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 274 i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+...++. .+-.+.|++.-.-+++.+. -.++.||.
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvsTa------~dGfnVfk 436 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVSTA------IDGFNVFK 436 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEEec------ccceeEEE
Confidence 2222222 3334899998766666655 44566654
No 137
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.4e-14 Score=135.12 Aligned_cols=308 Identities=15% Similarity=0.221 Sum_probs=195.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------------C
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------------N 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------------~ 70 (434)
+-+.|||.|+||+|.. -.-|.+|--++-..++.|.+ ..+..+.|||+++||++-+. .
T Consensus 214 tyv~wSP~GTYL~t~H------k~GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFH------KQGIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEe------ccceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3578999999999987 24699997666666777766 34557899999999998421 4
Q ss_pred eEEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013884 71 EIQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.|.|||+.++........ ....-.-+.||-+ +.++|.... ..|.||+.+. ...+-.++.--..+..+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~------~sisIyEtps---f~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG------NSISIYETPS---FMLLDKKSLKISGIRDF 352 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc------ceEEEEecCc---eeeecccccCCccccCc
Confidence 899999988654332222 1112235789988 666665433 4688999887 34444444455667789
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCC-------
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPA------- 219 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~------- 219 (434)
.|+|.++.|++-+ .+.+.... .+-++.+.....-+. .|- +-.-..+-|-.+|.+||+-......
T Consensus 353 swsP~~~llAYwt-pe~~~~pa------rvtL~evPs~~~iRt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 353 SWSPTSNLLAYWT-PETNNIPA------RVTLMEVPSKREIRTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCCCcceEEEEc-ccccCCcc------eEEEEecCccceeeeccce-eeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 9999988766543 22222111 123344333321111 110 0011246788999999984322111
Q ss_pred -eEEEEeccce--eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C---EEEEEeeCCCceEEEECCCC
Q 013884 220 -SATIFNKKCR--PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G---KQLGTTRAECSVTSEWSPDG 291 (434)
Q Consensus 220 -~i~l~d~~~~--~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~---~~i~~~~~~~~~~~~wspdg 291 (434)
.+.||.++-+ ++-.. -...+...+|-|.|..+++-.......++.+|-.++ . +++..+.......+.|||.|
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG 504 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG 504 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC
Confidence 3445554322 22222 256778899999998776654333467899998873 2 45566665566679999999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCce---eeeeecccceeeEEEcCCCCCCCC
Q 013884 292 RYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~~rl~~D~~i~iw~~~g~~---~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
++++.++... ..+.+..+|.+-.. +.........++.|.|.+.++...
T Consensus 505 ~fvvva~l~s---~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 505 RFVVVAALVS---RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred cEEEEEEecc---cccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence 9999988632 26778888876422 222233457889999999887765
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=3.3e-15 Score=146.83 Aligned_cols=265 Identities=14% Similarity=0.222 Sum_probs=178.7
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+.-.+|-..++.++...+.||.++.........+.. -.+.++.|+.-..++||+.. ..+.|.+|++.
T Consensus 44 AIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-----~nG~i~vWdln 118 (839)
T KOG0269|consen 44 AISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-----TNGVISVWDLN 118 (839)
T ss_pred eEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-----CCCcEEEEecC
Confidence 5666788888888888888999876533211111111 12456677754456666543 34689999996
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY- 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp- 205 (434)
.......+....-|.-.+.++.|++...++++..+ -|.+.+ +|.+...... .........|.+|+|+|
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--QDg~vK-------~~DlR~~~S~--~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS--QDGTVK-------CWDLRSKKSK--STFRSNSESIRDVKFSPG 187 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecC--CCceEE-------EEeeeccccc--ccccccchhhhceeeccC
Confidence 53223333444556777889999999888877543 344554 4555433322 11122357899999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccc----eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC
Q 013884 206 SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA 279 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~----~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~ 279 (434)
.+..|+ +++..|.+++||++. ...+..|.+++.|+.|+|++.+||+||.| ++|+|||..+. +.+.+++.
T Consensus 188 ~~~~F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD---K~vkiWd~t~~~~~~~~tInT 262 (839)
T KOG0269|consen 188 YGNKFA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD---KMVKIWDMTDSRAKPKHTINT 262 (839)
T ss_pred CCceEE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC---ccEEEEeccCCCccceeEEee
Confidence 566777 678889999999973 33334499999999999999999999944 69999998755 34555544
Q ss_pred C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce----eeeeecccceeeEEEcCCCCCCCC
Q 013884 280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL----FFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~----~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
. .+..+.|-|+-++.+..++ +-+|..|+|||+.-.- .+..+.+.+..+.|+-..+.++-.
T Consensus 263 iapv~rVkWRP~~~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred cceeeeeeeccCccchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 4 4455999999887554443 3458999999997653 344566778888898755544433
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.67 E-value=1.9e-14 Score=133.97 Aligned_cols=281 Identities=15% Similarity=0.205 Sum_probs=191.4
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEE
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v 74 (434)
|++++|.|..+ -|+..+ +.-++|-+||+.+.+ .+.-|..+ ...|.++.|+|. .+++.+..||+|+.
T Consensus 189 it~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~h---s~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTPH---SGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEeccC---CccccceEecCCChhheeeeccCceeee
Confidence 78999999876 555443 256899999995322 24444443 377889999994 46667778999999
Q ss_pred EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
-|++......+..+. ...+.++.++......+. .+.-+...+|++... +.....+..|+..++.+..||.
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~------~~~~G~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF------GDNVGNFNVIDLRTD--GSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEE------eecccceEEEEeecC--CccchhhhhhhcccceeecCCC
Confidence 998764332333332 223556666665333222 123347788888764 5667777788889999999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-- 228 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-- 228 (434)
-.++++.+ ..|.+.+ ||.+.-.+.... .-.+++.-.|+++.|||+|-.++ +.+.|..|+|||..+
T Consensus 334 ~p~~laT~--s~D~T~k-------IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~--TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 334 CPWFLATA--SLDQTAK-------IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL--TTCQDNEIRVFDSSCIS 402 (498)
T ss_pred Cchheeec--ccCccee-------eeehhhhcCCCCcceecccccceeeeeEEcCCCCceE--eeccCCceEEeeccccc
Confidence 88876544 3566665 454443343332 44567788999999999988855 566788999999852
Q ss_pred ---eeEEEc-CCc------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc---eE-EEECCCCCEE
Q 013884 229 ---RPILEL-GSG------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS---VT-SEWSPDGRYF 294 (434)
Q Consensus 229 ---~~~~~~-~~~------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~---~~-~~wspdg~~l 294 (434)
.+...+ |.. ..-...|.|+..+|++|.. ...|.|+|-+.++.+..+..+.. .. .+|+|-+..+
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence 122222 211 1224789999999999884 45899999999988888766533 22 8999999988
Q ss_pred EEEEcCCceeeCCcEEEEeecC
Q 013884 295 MTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~~g 316 (434)
++|+.+ .+.|.||.-.+
T Consensus 480 ~aG~~s-----~Gki~vft~k~ 496 (498)
T KOG4328|consen 480 AAGGNS-----SGKIYVFTNKK 496 (498)
T ss_pred eccCCc-----cceEEEEecCC
Confidence 888875 67777776443
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=3.3e-15 Score=138.88 Aligned_cols=227 Identities=21% Similarity=0.281 Sum_probs=154.6
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-------CCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
.|..+..-|....+||. +...+.|.||++..... ..+-..+.+|..+-..+.||+.-...++. .+.
T Consensus 126 EVnRaRymPQnp~iVAt-----~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls--~~~ 198 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVAT-----KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS--GSD 198 (422)
T ss_pred cchhhhhCCCCCcEEEe-----cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee--ccC
Confidence 45556666765556663 44556899999875431 12233677787777889999987665443 334
Q ss_pred cccCceeecceeEEEEeeCCCce-----eeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc--ee---EEE
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHE-----GLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RP---ILE 233 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~-----~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~--~~---~~~ 233 (434)
|.++. +|.+...+... ..+--.++..|.+++|+|-.. .|+ +...|+.+.|||++. .. ...
T Consensus 199 d~~i~-------lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~--sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 199 DHTIC-------LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG--SVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred CCcEE-------EEeccccccCCccccceEEeecCCcceehhhccccchhhhe--eecCCCeEEEEEcCCCCCCCccccc
Confidence 44444 44444333211 111223578999999999654 455 445688999999984 22 223
Q ss_pred cCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884 234 LGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 234 ~~~~~~~~i~~sP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i 309 (434)
-|.++++|++|+|.+.+ ||+|+ .+++|.+||+++. +.+.++.+| .+..+.|||+-..++..+.. |+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----DRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----CCcE
Confidence 37899999999998875 45555 5679999999987 577888887 66679999997765554443 9999
Q ss_pred EEEeecC--c-------------ee--eeeecccceeeEEEcCCCCCCCC
Q 013884 310 KIFHHNG--S-------------LF--FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 310 ~iw~~~g--~-------------~~--~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.|||++. + ++ +-.+...+.++.|+|..|.++..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 9999932 1 22 33466779999999999988765
No 141
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.67 E-value=4.2e-16 Score=140.09 Aligned_cols=237 Identities=11% Similarity=0.196 Sum_probs=167.2
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
+.++...+.+..++-|+|+ |+..++++ -|++|.|||.++.........|...|-++.+.- ..+. ++..+
T Consensus 187 ~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rvii-----sGSSD 256 (499)
T KOG0281|consen 187 LQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIV-----SGSSD 256 (499)
T ss_pred eeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEE-----ecCCC
Confidence 4445444333455658887 44455555 688999999998776566667777777766542 2221 45678
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCC
Q 013884 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG 196 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~ 196 (434)
++|++|++.+ +.++.+.-.|...+..+.++.. + +.++..|.+... |.+...... -.++-..+..
T Consensus 257 sTvrvWDv~t---ge~l~tlihHceaVLhlrf~ng--~---mvtcSkDrsiaV-------Wdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 257 STVRVWDVNT---GEPLNTLIHHCEAVLHLRFSNG--Y---MVTCSKDRSIAV-------WDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred ceEEEEeccC---CchhhHHhhhcceeEEEEEeCC--E---EEEecCCceeEE-------EeccCchHHHHHHHHhhhhh
Confidence 8999999999 8888888778888888888752 3 223335666653 444332221 1223445678
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.|+.+.|+ .++++ +.+.|.++++|+.. ++.+..+ |...+-|+.| .|+++++|+.|+ +|++||++.|++
T Consensus 322 aVNvVdfd--~kyIV--sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~c 392 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIV--SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC 392 (499)
T ss_pred heeeeccc--cceEE--EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc---eEEEEeccccHH
Confidence 89999996 44554 56778999999985 6667776 4556666666 489999999666 999999999999
Q ss_pred EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 274 i~~~~~~~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+..+++|.- -++.| |.+.|++|.. ||+|+|||+...
T Consensus 393 LRvLeGHEeLvRciRF--d~krIVSGaY------DGkikvWdl~aa 430 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRF--DNKRIVSGAY------DGKIKVWDLQAA 430 (499)
T ss_pred HHHHhchHHhhhheee--cCceeeeccc------cceEEEEecccc
Confidence 999999833 33666 6689999999 999999999543
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.1e-14 Score=129.60 Aligned_cols=259 Identities=14% Similarity=0.199 Sum_probs=180.6
Q ss_pred CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.|++||+.|.+||.+ .+|.|.|||...+........|...|.+++||+++..++. ...+..|.+|++.. +
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Llt------sS~D~si~lwDl~~---g 97 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLT------SSRDWSIKLWDLLK---G 97 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeee------ecCCceeEEEeccC---C
Confidence 489999999999998 6789999999998876677788889999999999543332 35667899999988 6
Q ss_pred CceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe----EEEEECcCC
Q 013884 132 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV----HDVQWSYSG 207 (434)
Q Consensus 132 ~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i----~~~~wspdg 207 (434)
.++.+.. |...+....|+|.....++.+..+. .. +.+.........++.+.++.. ....|.+.|
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~--sp---------~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEE--SP---------VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeEEEEEecC--Cc---------EEEEecCCceeeccCCCccccccccccccccCCC
Confidence 6555544 5667888899997776665543321 11 122222121222333322222 223588889
Q ss_pred CEEEEEEccCCCeEEEEeccc-eeEEEc--C-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------E--EE
Q 013884 208 SEFAVVYGFMPASATIFNKKC-RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------K--QL 274 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~-~~~~~~--~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-------~--~i 274 (434)
+++. +|..-|++.+||..+ +.+..+ . ...+..|.++-.|++|++-..| ..|+.|+.+.- + ..
T Consensus 166 ~yIi--tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD---RvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 166 KYII--TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD---RVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred CEEE--EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC---ceEEEEehhhhcccCccCCcChh
Confidence 9888 688889999999853 334444 3 3678899999999999998844 59999997631 1 11
Q ss_pred EEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ec-ccceeeEEEcCCCCCCCC
Q 013884 275 GTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 275 ~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~-~~~~~~~w~p~~~~~~~~ 342 (434)
++++.- .-..|.||-||.|++.++.. ...++||.- .|.++... .. +++.++.|+|..+.+.+-
T Consensus 241 ~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 241 HKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 222111 11238999999999988863 789999998 56665554 33 679999999987776654
No 143
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.8e-14 Score=141.66 Aligned_cols=241 Identities=12% Similarity=0.103 Sum_probs=148.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-c-CCeeEEEE
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-V-PGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~-~~v~~~~~ 98 (434)
...|.+||. +|...+.+.... ..+.+++|||||+.|++... ..|.+||+..... ..+. . ..+....|
T Consensus 175 ~~~L~~~D~-dG~~~~~l~~~~---~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~ 247 (427)
T PRK02889 175 RYQLQISDA-DGQNAQSALSSP---EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAW 247 (427)
T ss_pred ccEEEEECC-CCCCceEeccCC---CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEE
Confidence 457888886 455444443332 45558999999999988742 3699999976542 2222 2 24567899
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
||+ +..+++.... .+...||.+... ...+..++.+........|+|||+.|++... .. |...||
T Consensus 248 SPD-G~~la~~~~~----~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~----~~-----g~~~Iy 311 (427)
T PRK02889 248 SPD-GRTLAVALSR----DGNSQIYTVNAD--GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD----RG-----GAPQIY 311 (427)
T ss_pred CCC-CCEEEEEEcc----CCCceEEEEECC--CCCcEECCCCCCCCcCeEEcCCCCEEEEEec----CC-----CCcEEE
Confidence 999 4555443221 123445544321 2234444444444567889999999877521 11 233578
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEec
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~ 256 (434)
.++..+.....+... .......+|||||+.+++.+... ...|.+||+.......+. ........|+|||++|+.+..
T Consensus 312 ~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 312 RMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred EEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEe
Confidence 887766544445433 23345689999999999754321 126899998765555442 233467899999999998875
Q ss_pred CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCC
Q 013884 257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPD 290 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspd 290 (434)
......+++.+.. ++....+.. ..+...+|||-
T Consensus 391 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 391 QGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred cCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 5434567777774 433333332 24556899873
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.66 E-value=2.5e-15 Score=141.03 Aligned_cols=232 Identities=12% Similarity=0.164 Sum_probs=170.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++..++|||+.|++++ +-.+|.|||+..-..--............ .++.|||.+++.++ .++.|.|||+.+-
T Consensus 468 iRSckL~pdgrtLivGG-----eastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred eeeeEecCCCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccc
Confidence 67888999999999988 67899999997654321111111111333 68899999987665 7899999999987
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
......+.+.+++.++.+|+++-. + | ++|.++.||-||+.. +..+.+.. |...+.++...|.|.+|++.-
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtk-l--W---TGGlDntvRcWDlre---grqlqqhd-F~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTK-L--W---TGGLDNTVRCWDLRE---GRQLQQHD-FSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred eeeecccCCCCCceeEEecCCCce-e--e---cCCCccceeehhhhh---hhhhhhhh-hhhhheecccCCCccceeeec
Confidence 666667788899999999998533 2 2 478899999999987 55554443 466788899999999998752
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~ 238 (434)
.. .+++.+.+.+...-.+ -.++..|.++.|++-|++|+ +..+|.-+..|..- +..+++. +..+
T Consensus 612 en------------s~vevlh~skp~kyql-hlheScVLSlKFa~cGkwfv--StGkDnlLnawrtPyGasiFqskE~Ss 676 (705)
T KOG0639|consen 612 EN------------SNVEVLHTSKPEKYQL-HLHESCVLSLKFAYCGKWFV--STGKDNLLNAWRTPYGASIFQSKESSS 676 (705)
T ss_pred cc------------CcEEEEecCCccceee-cccccEEEEEEecccCceee--ecCchhhhhhccCccccceeeccccCc
Confidence 11 1346666555432222 23578999999999999999 56788888888774 4556655 6789
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
|.++.+|-|.+||++|+.+. ...+|.
T Consensus 677 VlsCDIS~ddkyIVTGSGdk---kATVYe 702 (705)
T KOG0639|consen 677 VLSCDISFDDKYIVTGSGDK---KATVYE 702 (705)
T ss_pred ceeeeeccCceEEEecCCCc---ceEEEE
Confidence 99999999999999988543 455554
No 145
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=3e-14 Score=130.79 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=182.8
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEE
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~ 73 (434)
|..+.|.+++. .|+|++ .|..|+||-+..++ .+.-......|...++++.|+|+|.+||++.| ++|.
T Consensus 16 v~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred eEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 56788888777 999988 89999999885332 22222222335578889999999999999976 5999
Q ss_pred EEeCCC-------------CCCcee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013884 74 FFDTTD-------------FPKGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR 137 (434)
Q Consensus 74 v~~~~~-------------~~~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~ 137 (434)
+|...+ .+...+ ...|.+.|.+++|+|++ ..+.. +..+..+++|++.. ++.++..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s-----~s~dns~~l~Dv~~---G~l~~~~ 161 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVS-----GSVDNSVRLWDVHA---GQLLAIL 161 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeee-----eeccceEEEEEecc---ceeEeec
Confidence 998762 010111 12234678899999994 44432 34567899999988 8889999
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCcee--ecceeEEEEe-------e-CCCceeeeecCCC----CCeEEEEE
Q 013884 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLT-------T-DGTHEGLVPLRKE----GPVHDVQW 203 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~-------~-~~~~~~~v~l~~~----~~i~~~~w 203 (434)
..|...+--++|.|-+++++.+. .|...+.+ .-..-++.+. . .........+-++ .-.+.++|
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred cccccccceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 99999999999999999876543 33322211 0111112111 0 0000111111121 12346889
Q ss_pred CcCCCEEEEEEccC-------CCeEEEEecc--ceeEEEc--CCcCeeEEEE------------------CCCCCeEEEE
Q 013884 204 SYSGSEFAVVYGFM-------PASATIFNKK--CRPILEL--GSGPYNTVRW------------------NPKGKFLCLA 254 (434)
Q Consensus 204 spdg~~~av~~g~~-------~~~i~l~d~~--~~~~~~~--~~~~~~~i~~------------------sP~g~~l~~~ 254 (434)
+|||..++.-+|.- ....++|+-+ ..+...+ ...+...+.| -|.+-.+|+|
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 99998887432221 1244556432 1222222 1222222232 3445556666
Q ss_pred ecCCCCCeEEEEEccCCEEEEEee---CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 255 GFGNLPGDMAFWDYVDGKQLGTTR---AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~~~---~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
..+ .|+|||.++.+.+.... -+.+++++||+||.+|+..++ |+-.-+-.+.+..+.
T Consensus 319 t~~----svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~------DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 319 TKN----SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST------DGFCSLVTFEPWELG 377 (434)
T ss_pred ecc----eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEecc------CCceEEEEEcchhcc
Confidence 533 69999999876555443 347778999999999999999 998888777766554
No 146
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.2e-13 Score=134.55 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=150.2
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .........+....|||+ +..+++...+. ....|.++++.. ++. ...+.+......+.|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPD-G~~La~~s~~~--g~~~L~~~dl~t---g~~-~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPD-GRKLAYVSFEN--RKAEIFVQDIYT---QVR-EKVTSFPGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCC-CCEEEEEEecC--CCcEEEEEECCC---CCe-EEecCCCCCcCCeeEC
Confidence 677777655332 222222345778999999 55565544332 224678888765 332 2233333344578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~ 229 (434)
|||+.|++..+.+ |...||.++..+.....++. ........+|+|||+.+++.+... ...+.++|+.+.
T Consensus 271 PDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 271 PDGKKLALVLSKD---------GQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999988764321 34468888877654333322 234567799999999998754321 226777787654
Q ss_pred eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
....+ .........|||||++|+..+..+....|.++|+.+++..............|+|||++|+.++.. ++
T Consensus 341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-----~g 415 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-----QG 415 (448)
T ss_pred CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec-----CC
Confidence 44333 333334579999999998877544334677789888754332222222346899999999988862 23
Q ss_pred --cEEEEeecCceeeeeec--ccceeeEEEcC
Q 013884 308 --GIKIFHHNGSLFFKKMF--DKLFQAEWKPV 335 (434)
Q Consensus 308 --~i~iw~~~g~~~~~~~~--~~~~~~~w~p~ 335 (434)
.+.+++.+|........ .++....|+|.
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 36777888886655432 35677788774
No 147
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=4.2e-14 Score=125.97 Aligned_cols=269 Identities=12% Similarity=0.160 Sum_probs=174.6
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC------CCCCCceeeeeecCCeeEE
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT------TDFPKGILYRLRVPGVAAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~------~~~~~~~~~~~~~~~v~~~ 96 (434)
.|.+.+||.+++|.|+.+|.++- ..+.++.|++.+.++++++ |.+.+||.. +........... ...
T Consensus 168 ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE----eE~ 240 (481)
T KOG0300|consen 168 ADHTARIWSLESGACLATYTGHT---GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE----EEE 240 (481)
T ss_pred cccceeEEeeccccceeeecccc---cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch----hhh
Confidence 78999999999999999998854 7888999999999999985 569999983 221100000000 000
Q ss_pred EEeCCCCCeEEEEecCCCCCC-ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013884 97 EVSKAPGSHVAVFVPESKGSP-ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~-~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~ 175 (434)
.-| +..... ...+...+ -+| .-++..++.|.+.+....|-..|+.++.. ..|.+-
T Consensus 241 e~s-De~~~d---~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTa---SWDRTA------- 296 (481)
T KOG0300|consen 241 EHS-DEHNRD---TDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTA---SWDRTA------- 296 (481)
T ss_pred hcc-cccccc---cccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeee---eccccc-------
Confidence 001 000000 00000000 111 45666777788888888999888886442 234444
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcCCcCeeEEEECCCCCeE
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFL 251 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~~~~~~~i~~sP~g~~l 251 (434)
+||.++. +....+...++...+.++-+|+-+.++ +.+.|.+.++||.+ ...+++-|...++++.|.-+.+.
T Consensus 297 nlwDVEt--ge~v~~LtGHd~ELtHcstHptQrLVv--TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v- 371 (481)
T KOG0300|consen 297 NLWDVET--GEVVNILTGHDSELTHCSTHPTQRLVV--TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV- 371 (481)
T ss_pred eeeeecc--CceeccccCcchhccccccCCcceEEE--EeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-
Confidence 3444432 211112223466777788888755444 67889999999987 23355558999999999987664
Q ss_pred EEEecCCCCCeEEEEEccCCE-EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee------
Q 013884 252 CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------ 323 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~------ 323 (434)
++++ .+.+|++||+++++ .+.++... .+..++.|-.+..|+.--. ...|+|||++|..+...+
T Consensus 372 VSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 372 VSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred eecC---CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccc
Confidence 4555 44699999999874 45555443 4455888888878777665 678999999998776553
Q ss_pred -cccceeeEEEcCCC
Q 013884 324 -FDKLFQAEWKPVSP 337 (434)
Q Consensus 324 -~~~~~~~~w~p~~~ 337 (434)
...+.+.+|.-..+
T Consensus 443 HrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHP 457 (481)
T ss_pred cceeeeeeeccccCc
Confidence 33588999986654
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.62 E-value=9.2e-14 Score=124.21 Aligned_cols=268 Identities=14% Similarity=0.159 Sum_probs=165.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------CcEE-----EEEeecCcCCCCCCeeee-------cCCCcE
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GEAV-----YQLFQKNMTKTTWPSIRF-------SSDEAV 63 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~~~-----~~~~~~~~~~~~~~~~~~-------S~d~~~ 63 (434)
....|||||+-|++-+ +|..+.+|++.. +..+ .++.-. ....+-...| -|+..+
T Consensus 53 kgckWSPDGSciL~~s-----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLS-----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCceEEeec-----ccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccce
Confidence 4568999999999988 899999999831 1110 011000 0122222334 256677
Q ss_pred EEEec-CCeEEEEeCCCCCCceeee--ee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-
Q 013884 64 ACRMA-TNEIQFFDTTDFPKGILYR--LR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR- 136 (434)
Q Consensus 64 la~~~-~~~i~v~~~~~~~~~~~~~--~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~- 136 (434)
+|... ++-|++||..++......+ -+ +....++.||||+..++| |....|++|++......-++..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-------GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-------GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-------cccceEEEeeccCCCCCCcchhh
Confidence 77664 5799999987755322111 11 235668999999777776 5567889999843210111111
Q ss_pred ----eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884 137 ----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 137 ----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av 212 (434)
+.....-+.+++++|-...++... +|-....||.- .+.....+...+.+.|+.++|.++|+.|.+
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~g---------sY~q~~giy~~--~~~~pl~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVG---------SYGQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeee---------cccceeeeEec--CCCCceeeecccCCCeeeEEeccCcCeecc
Confidence 111234456778888655333221 22222234432 233233333456899999999999999985
Q ss_pred EEccCCCeEEEEecc--ceeEEEc--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--Cc
Q 013884 213 VYGFMPASATIFNKK--CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CS 282 (434)
Q Consensus 213 ~~g~~~~~i~l~d~~--~~~~~~~--~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~ 282 (434)
- ...+.+|..||++ ..++..+ | +..+--....|+|++|++|+ -+|.|.+||+++ +..+..+..+ .+
T Consensus 268 G-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd~v 343 (406)
T KOG2919|consen 268 G-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSDTV 343 (406)
T ss_pred c-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccccc
Confidence 2 3356699999997 3455555 2 34445566789999999887 668999999998 5555555444 44
Q ss_pred eEEEECCCCCEEEEEEc
Q 013884 283 VTSEWSPDGRYFMTATT 299 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~ 299 (434)
..+++.|--..++|++.
T Consensus 344 NgvslnP~mpilatssG 360 (406)
T KOG2919|consen 344 NGVSLNPIMPILATSSG 360 (406)
T ss_pred cceecCcccceeeeccC
Confidence 45999999887777764
No 149
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.6e-13 Score=131.87 Aligned_cols=247 Identities=10% Similarity=0.060 Sum_probs=146.7
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+.|...... ...+.....+.+..|||++.....+|+....+ ...|.+.++.. +. ...++.+........|+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g-~~~I~~~~l~~---g~-~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLG-VPKIFLGSLEN---PA-GKKILALQGNQLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCC-CceEEEEECCC---CC-ceEeecCCCCccceEEC
Confidence 566666654332 11222223456789999965433334443333 35677777765 32 23334455556678999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEE--eeCC---CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYL--TTDG---THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI 223 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l--~~~~---~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l 223 (434)
|||+.|++..+.. |...+|.. +... +....+.-...+.....+|||||+.+++++. .++ .+.+
T Consensus 240 PDG~~Laf~s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~ 309 (428)
T PRK01029 240 PRKKLLAFISDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN-KDGRPRIYI 309 (428)
T ss_pred CCCCEEEEEECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC-CCCCceEEE
Confidence 9999998764321 11123332 2221 1112222121234467899999999998653 234 4555
Q ss_pred Eecc--ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884 224 FNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 224 ~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
+++. +.....+ +...+....|||||++|+..+..+....|++||+.+++........ ......|+|||++|+..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence 5553 2222222 3455678999999999988765443468999999988654443332 445589999999998766
Q ss_pred cCCceeeCCcEEEEeecCceeeeee--cccceeeEEEcCC
Q 013884 299 TAPRLQIDNGIKIFHHNGSLFFKKM--FDKLFQAEWKPVS 336 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~~g~~~~~~~--~~~~~~~~w~p~~ 336 (434)
.. +-+..|.+|++.+....... ..+.....|+|..
T Consensus 390 ~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 52 11356888888776444332 2356788888764
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=134.91 Aligned_cols=220 Identities=11% Similarity=0.142 Sum_probs=145.9
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
.|.||+-+|+|.||+... ..++|++|.+.+|..+..+..| -..++|+.||.||+++.+++ |+.|++|.+.+
T Consensus 83 ~v~al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~~aH---YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVLSAH---YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred ceeeeecCCCceEEEeec-----ccCcEEEEEeccccHHHHHHhh---ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 378999999999999875 5689999999999988877443 37888999999999999995 67999999743
Q ss_pred CC-------Cce--eeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 80 FP-------KGI--LYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~~-------~~~--~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
.- ... ...-|.-.|+++...+++- ..+. +.+.+.++++|++..
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-----TaS~D~t~k~wdlS~---------------------- 207 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-----TASEDRTIKLWDLSL---------------------- 207 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEE-----EecCCceEEEEEecc----------------------
Confidence 10 000 0111122344544444421 1111 123344555555433
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC- 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~- 228 (434)
|.. ...+.-+.++++++.+|.++.+.+ |..+|+|.+.++..
T Consensus 208 ---g~L---------------------------------Llti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 208 ---GVL---------------------------------LLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKL 249 (476)
T ss_pred ---cee---------------------------------eEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcC
Confidence 111 111111567889999998887774 88889888876521
Q ss_pred ----------------eeEEEc--CCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEE
Q 013884 229 ----------------RPILEL--GSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSE 286 (434)
Q Consensus 229 ----------------~~~~~~--~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~ 286 (434)
.++..+ |.+ .|+|+++|-||.+|++|+ .+|++.|||..+.++++++.. ..++.+.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd---~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD---EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC---CCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 112222 444 899999999999999998 678999999999988877763 2445577
Q ss_pred ECCCCCEEEE
Q 013884 287 WSPDGRYFMT 296 (434)
Q Consensus 287 wspdg~~l~t 296 (434)
+.|=-+-++.
T Consensus 327 i~~~~~~~~l 336 (476)
T KOG0646|consen 327 INPLERGIIL 336 (476)
T ss_pred eeccccceec
Confidence 7554333333
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.62 E-value=1.7e-13 Score=133.52 Aligned_cols=312 Identities=16% Similarity=0.210 Sum_probs=180.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEe--ecCcCC-CCCCeeeecCCCcEEEEe-cCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLF--QKNMTK-TTWPSIRFSSDEAVACRM-ATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~--~~~~~~-~~~~~~~~S~d~~~la~~-~~~~i~v~ 75 (434)
|.++.|+|.+.-|++.+ .|+++.||.-.+ |--+.... .-.... .-| ...|+|++..+++- ..|-.++|
T Consensus 270 V~sv~W~p~~~~LLSAS-----aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 270 VYSVWWHPEGLDLLSAS-----ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred eEEEEEccchhhheecc-----cCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEE
Confidence 67899999998888888 899999997543 32222211 111111 345 78999999877665 56899999
Q ss_pred eCCCC---CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC-CCCCceeeeeecccceeEEEECC
Q 013884 76 DTTDF---PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD-LQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 76 ~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~-~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
...+. ........|..+|+++.|+|.+..++++ +.+.+-|||.--.. ..=.++++-..|..+..++++-+
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv------s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV------SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEe------ccccceeeecccccccceeeecccccccccceeeehcc
Confidence 94442 2224456788899999999997655543 23333344332100 00122333333444444444333
Q ss_pred C-CCeEEEEEE-------------------------ec------------ccccCceee------cceeEEEEeeC-CCc
Q 013884 152 G-STGLLAVAQ-------------------------SD------------VDKTNQSYY------GESKLNYLTTD-GTH 186 (434)
Q Consensus 152 ~-G~~l~~~~~-------------------------~~------------~d~~~~~~~------g~~~l~~l~~~-~~~ 186 (434)
. -.++ ..++ .+ ...+++-.+ |...+-..+.. ...
T Consensus 418 ~~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 418 EDLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred CCceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 1 1100 0000 00 001111111 00000000000 000
Q ss_pred ee------------eee--------cCCCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeccc---eeEEEcCCcCee
Q 013884 187 EG------------LVP--------LRKEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKC---RPILELGSGPYN 240 (434)
Q Consensus 187 ~~------------~v~--------l~~~~~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~~---~~~~~~~~~~~~ 240 (434)
.+ ..+ ..|...|++++.+|+|+.+|...-+ ..+-|.||+... .....+|.-.|+
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 00 000 1235678999999999999953322 223789998753 223445888899
Q ss_pred EEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 241 ~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.|.|||||++|++++.|. ++.+|...... .....+.| -+..+.|+||+.+|+|++- |.+|+||..
T Consensus 577 ~l~FSpdg~~LLsvsRDR---t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR------DK~VkVW~~ 647 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR------DKKVKVWEE 647 (764)
T ss_pred EEEECCCCcEEEEeecCc---eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC------CceEEEEec
Confidence 999999999999999665 99999875431 22334555 3445999999999999999 999999998
Q ss_pred cCc---eeee---e-ecccceeeEEEcC
Q 013884 315 NGS---LFFK---K-MFDKLFQAEWKPV 335 (434)
Q Consensus 315 ~g~---~~~~---~-~~~~~~~~~w~p~ 335 (434)
... .+.+ . .-..+..++|.|.
T Consensus 648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 648 PDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred cCchhhhhhhhchhccCCceeeEEeecc
Confidence 543 1211 1 1235667777764
No 152
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.6e-13 Score=126.73 Aligned_cols=288 Identities=11% Similarity=0.135 Sum_probs=194.2
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKA 101 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 101 (434)
-.++.+||+.||..+.+|.+....+.. .+. .=.+.|++++ ....|++|.+....... .+...+ .|..+.-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~--sl~-~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAA--SLT-ALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccch--hhh-hhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCC
Confidence 467999999999998888765211100 000 0134677666 34599999987654322 333344 4677888887
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
+ .+++ .++..+.+.+|.+.+ +..+..+..|--.++++.|+.||.+++.. ..|.....|.- ..+++
T Consensus 93 G-~~l~-----ag~i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW~l---~~lv~ 157 (476)
T KOG0646|consen 93 G-YFLL-----AGTISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVWLL---TDLVS 157 (476)
T ss_pred c-eEEE-----eecccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEEEE---Eeecc
Confidence 4 3333 134667899999998 88888888888899999999999986442 23433333321 11122
Q ss_pred eCCCceeeee----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEe
Q 013884 182 TDGTHEGLVP----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 182 ~~~~~~~~v~----l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~ 255 (434)
.+..+ ...+ -+|.-+|.++...+-|..-.+.+.+.|.++++||+. +..+.++ -...+++++..|-++.+.+|+
T Consensus 158 a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 158 ADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 22221 1111 235678999988876544344477889999999996 4444454 467889999999999999988
Q ss_pred cCCCCCeEEEEEccCC----------------EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 256 FGNLPGDMAFWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~----------------~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.+|.|.+.++.+. ..+..+.+| .+++++.|-||..|++|+. ||.|+|||+.
T Consensus 237 ---~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~------dg~VcvWdi~ 307 (476)
T KOG0646|consen 237 ---EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE------DGKVCVWDIY 307 (476)
T ss_pred ---CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC------CCCEEEEecc
Confidence 6789998876431 233444444 5778999999999999999 9999999996
Q ss_pred Cc-eeeee--ecccceeeEEEcCCCCCCC
Q 013884 316 GS-LFFKK--MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 316 g~-~~~~~--~~~~~~~~~w~p~~~~~~~ 341 (434)
.+ ++... ...++..+..+|..+..+.
T Consensus 308 S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hHHHHHHHhhhccccceeEeeccccceec
Confidence 65 33332 4567888888877665554
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=3e-13 Score=119.54 Aligned_cols=284 Identities=12% Similarity=0.156 Sum_probs=186.2
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc------------EEEEEeecCcCCCCCCeeeecC-CCcEEEEe
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE------------AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM 67 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~------------~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~ 67 (434)
|.+|+.-| .|+|+++++ .|+.+.|||+++.. ++-.-.+.+.|+..+..+.|=| |.-.+.++
T Consensus 46 vNsL~id~tegrymlSGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cceeeeccccceEEeecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 44555555 478998877 89999999996543 1112233344667788899988 44455444
Q ss_pred -cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884 68 -ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 68 -~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
.|.+++|||++..+. ...+..+ .|.+-+|||-.- .+||. +.....|++.++.+ +..-..++.|+..
T Consensus 121 SFDhtlKVWDtnTlQ~--a~~F~me~~VYshamSp~a~sHcLiA~-----gtr~~~VrLCDi~S---Gs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE--AVDFKMEGKVYSHAMSPMAMSHCLIAA-----GTRDVQVRLCDIAS---GSFSHTLSGHRDG 190 (397)
T ss_pred cccceEEEeeccccee--eEEeecCceeehhhcChhhhcceEEEE-----ecCCCcEEEEeccC---CcceeeeccccCc
Confidence 688999999988653 3344433 577788888632 23343 23445899999998 7888899999999
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecc---eeEEEEeeCC-Cceeee--ecCCCCCeEEEEECcCCCEEEEEEccC
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE---SKLNYLTTDG-THEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~---~~l~~l~~~~-~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~ 217 (434)
+..+.|+|...+++... ..|...+.|+-. ..+-.++... .....+ ...+.+.++.++|+.||.+++. ...
T Consensus 191 vlaV~Wsp~~e~vLatg--saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gt 266 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATG--SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGT 266 (397)
T ss_pred eEEEEeccCceeEEEec--CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccC
Confidence 99999999999886554 456666655311 1112222211 111111 1234788999999999999995 455
Q ss_pred CCeEEEEeccc--eeEEEcC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013884 218 PASATIFNKKC--RPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE 286 (434)
Q Consensus 218 ~~~i~l~d~~~--~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ 286 (434)
+.++++|+... +.+..++ .++-..+. +-+...++.-- .+|.|.++++-.+..+..+..| .+.++.
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p---~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFP---NDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEe---cCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 77999998742 2222221 11112233 33333333322 2368999999999888888777 455578
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 287 WSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+-|+=+...++.. |+.|..|-.
T Consensus 343 ~~~~fq~~~tg~~------d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRPDFEQCFTGDM------NGNIYMWSP 364 (397)
T ss_pred ecCchhhhhcccc------CCccccccc
Confidence 8899888888887 888888875
No 154
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.4e-12 Score=125.61 Aligned_cols=230 Identities=9% Similarity=-0.008 Sum_probs=140.4
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+-|...... .... ....+....|||++.. +++|....++. ..|.++++.+ + ....+..+........|+
T Consensus 170 ~l~~~d~dg~~~-~~~~-~~~~~~~p~wSpDG~~-~i~y~s~~~~~-~~Iyv~dl~t---g-~~~~lt~~~g~~~~~~~S 241 (419)
T PRK04043 170 NIVLADYTLTYQ-KVIV-KGGLNIFPKWANKEQT-AFYYTSYGERK-PTLYKYNLYT---G-KKEKIASSQGMLVVSDVS 241 (419)
T ss_pred eEEEECCCCCce-eEEc-cCCCeEeEEECCCCCc-EEEEEEccCCC-CEEEEEECCC---C-cEEEEecCCCcEEeeEEC
Confidence 566655544322 1111 1124567899999543 33443332222 3788888865 3 223333345555567899
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccce
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.++..++....++- ..+......|+|||+.+++++..... .|.++|+.+.
T Consensus 242 PDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 242 KDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CCCCEEEEEEccC---------CCcEEEEEECCCCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999998765331 34568998877764333332 22334567899999999997654322 7888888765
Q ss_pred eEEEcC-CcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013884 230 PILELG-SGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 230 ~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~------~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~r 302 (434)
....+. .+..+ ..|||||++|+....... ...|++.|+++++..............|||||++|+.++..
T Consensus 312 ~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~-- 388 (419)
T PRK04043 312 SVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYL-- 388 (419)
T ss_pred CeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEcc--
Confidence 554432 12223 589999999988765421 14789999988754333333222348999999999988762
Q ss_pred eeeCCcEEEEeecCceeeee
Q 013884 303 LQIDNGIKIFHHNGSLFFKK 322 (434)
Q Consensus 303 l~~D~~i~iw~~~g~~~~~~ 322 (434)
+-...+.+.+++|...+..
T Consensus 389 -~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 389 -GNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred -CCcEEEEEEecCCCeeEEe
Confidence 0022366777888755443
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.7e-13 Score=130.20 Aligned_cols=309 Identities=15% Similarity=0.138 Sum_probs=188.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee--cCcC----CCCCCeeeecCCCcEEEEecCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ--KNMT----KTTWPSIRFSSDEAVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~--~~~~----~~~~~~~~~S~d~~~la~~~~~~i~v~ 75 (434)
|.+|+|+|+|..|++++ .|+.|++||+.++..++.... .... .-.| ++.|-.|+.+++.-+.|+|++|
T Consensus 157 vLslsw~~~~~~i~~Gs-----~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-Sv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGS-----IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-SVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred EEEEEecCCccEEEecc-----cCceEEEEEcCCCceEEEeeecccccccCCceEEE-EEEEeecCcEEEecCCceEEEE
Confidence 67899999999999988 899999999999988772211 1111 1224 4555556655544467999999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC---ceeeeeecccceeEEEECCC
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ---PLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~---~i~~~~~~~~~~~~~~ws~~ 152 (434)
|...+........+...|.+++.+++++..+. .|.++.+..|..... .. ....+.+|..++.+++-.++
T Consensus 231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs------aGvd~~ii~~~~~~~--~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFS------AGVDPKIIQYSLTTN--KSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred cccCcchhhhhhhhhcceeEEEEcCCCCeEEE------ccCCCceEEEEecCC--ccceeeeccccCCcccceeeeeecc
Confidence 99887776777788888999999988544432 355555555555432 11 22344555556555544332
Q ss_pred -----CCe-EEEEEEecccc-------------cCceeecceeE-----------EEEeeC-------CCceeeeecCCC
Q 013884 153 -----STG-LLAVAQSDVDK-------------TNQSYYGESKL-----------NYLTTD-------GTHEGLVPLRKE 195 (434)
Q Consensus 153 -----G~~-l~~~~~~~~d~-------------~~~~~~g~~~l-----------~~l~~~-------~~~~~~v~l~~~ 195 (434)
|.. .+++.....++ ...+-.++..| |.+... -.+-..+.+...
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~ 382 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK 382 (691)
T ss_pred eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence 111 11111110000 00011122222 222111 011122334446
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE---Ec-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~---~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
.-|.+.+.||+|+.+++- +...++||.++..... .. .......+.|+-|+..+++++. ..+.+.+++
T Consensus 383 ~nIs~~aiSPdg~~Ia~s---t~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~e 457 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAIS---TVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFE 457 (691)
T ss_pred cceeeeccCCCCCEEEEe---eccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEE
Confidence 678899999999999963 3558889887642211 11 2345677899999988887773 346888888
Q ss_pred ccCC--EEEEEee----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee---cccceeeEEEcC
Q 013884 268 YVDG--KQLGTTR----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM---FDKLFQAEWKPV 335 (434)
Q Consensus 268 ~~~~--~~i~~~~----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~---~~~~~~~~w~p~ 335 (434)
.++. +.+..+. .+.+..+.-||||+||+++++ ++.|.+|++.+...+... .-.+..+.++|.
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPF 528 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------cceEEEEEcccceeecchhccCcceeeeecccc
Confidence 7754 3333222 235566999999999999999 999999999876444321 123555566643
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9e-13 Score=128.26 Aligned_cols=266 Identities=11% Similarity=0.122 Sum_probs=175.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~ 80 (434)
|.||+||.+.+.||... .|++|-||++..+=.... +.+. ....+..++|++.++++-.+.+++|..||+.+.
T Consensus 28 I~slA~s~kS~~lAvsR-----t~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSR-----TDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eEEEEEeccCCceeeec-----cCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence 78999999999999876 899999999988744433 3333 236777999999899998889999999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~~ 158 (434)
............|.+++.+|. ...+++- ..++.+..++... ......+.+. ++.+.++.|+|+|..|+.
T Consensus 101 k~~~~~d~~gg~IWsiai~p~-~~~l~Ig-----cddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPE-NTILAIG-----CDDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred ceeEEecCCCcceeEEEeCCc-cceEEee-----cCCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEe
Confidence 544444444456888899987 4455542 2445555555544 3333333332 456789999999998655
Q ss_pred EEEecccccCceeecce--eEEEEe--eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---E
Q 013884 159 VAQSDVDKTNQSYYGES--KLNYLT--TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---I 231 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~--~l~~l~--~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~ 231 (434)
.+ .|..++.|.+.. .++.+. +.+... ..+.-|.++.+-.++. ++ +|+.-|+|++||..... -
T Consensus 172 Gs---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k-----~~~~iVWSv~~Lrd~t-I~--sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 172 GS---IDGVIRIWDVKSGQTLHIITMQLDRLSK-----REPTIVWSVLFLRDST-IA--SGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred cc---cCceEEEEEcCCCceEEEeeeccccccc-----CCceEEEEEEEeecCc-EE--EecCCceEEEEcccCcchhhh
Confidence 32 555555554332 233221 111110 0133467777776663 33 58888999999986433 2
Q ss_pred EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE----E--EEeeCCCceEEEECCCCCEEEEEEc
Q 013884 232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ----L--GTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 232 ~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~----i--~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
+..|.+.+.+++-++++..+.++| .++.|.-|...+.+. . ..+..|++-.++..++ .|++|+.
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 334889999999999999999999 667888777665422 1 1223345555665555 4445444
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=122.46 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=159.1
Q ss_pred eeeecCCCcEEEEe-cCCeEEEEeCCCCC--Cc----e----eeeee---cCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013884 54 SIRFSSDEAVACRM-ATNEIQFFDTTDFP--KG----I----LYRLR---VPGVAAFEVSKAP---GSHVAVFVPESKGS 116 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~----~----~~~~~---~~~v~~~~~sp~~---~~~ia~~~~~~~~~ 116 (434)
.+.|||||+.+++. .++.+++|+++... .. . ...++ .+.|.++.|-|-- .+.-.+|.. ...
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SSR 131 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--ccc
Confidence 57899999988776 57899999986421 10 0 01111 1234455554210 111112211 123
Q ss_pred CceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCCceeee
Q 013884 117 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLV 190 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~~v 190 (434)
..-|.+|+.-+ ++.-+....+. ....++.|+|||..|... ...+ |..+++ ..+..+.+
T Consensus 132 ~~PIh~wdaft---G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrc---------irvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFT---GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRC---------IRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccc---cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccce---------EEEeeccCCCCCCcc
Confidence 34577888766 33333333222 123578999999998653 2222 233332 11112222
Q ss_pred --ecCC-----CCCeEEEEECcCCC-EEEEEEccCCCeEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 191 --PLRK-----EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 191 --~l~~-----~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
++.+ .+-|.+++|+|... .+++ |.-...+-||.- ...++..+ |.+.|+.+.|.++|+.|.+|+.-
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk-- 271 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-- 271 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceee--ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC--
Confidence 2222 57889999999554 6664 444557777755 34555555 68899999999999999988753
Q ss_pred CCeEEEEEccCC-EEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC--c--eeeeeeccccee
Q 013884 260 PGDMAFWDYVDG-KQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--S--LFFKKMFDKLFQ 329 (434)
Q Consensus 260 ~g~i~iwd~~~~-~~i~~~~~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g--~--~~~~~~~~~~~~ 329 (434)
+-.|..||++.. ..+..+..| .-+.+...|+|++|+++++ |+.|++||..+ . .++....+-+..
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNg 345 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNG 345 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccc
Confidence 368999998865 444455444 2234788999999999999 99999999965 3 233344556777
Q ss_pred eEEEcCCCCCCC
Q 013884 330 AEWKPVSPDKFG 341 (434)
Q Consensus 330 ~~w~p~~~~~~~ 341 (434)
|+.+|--|-+..
T Consensus 346 vslnP~mpilat 357 (406)
T KOG2919|consen 346 VSLNPIMPILAT 357 (406)
T ss_pred eecCcccceeee
Confidence 888876444333
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7e-13 Score=117.93 Aligned_cols=255 Identities=16% Similarity=0.271 Sum_probs=159.2
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEE
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQ 73 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~ 73 (434)
+|.++.|.+.|+.++|++ .|..|+|||..+.. +......+.. ..| .+.|.+ =|+.+|++ .|.++.
T Consensus 15 lihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~-rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIW-RVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred eeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCC--cEE-EEEecCccccceEEEEecCCcee
Confidence 578999999999999999 89999999964432 3334444432 455 889986 57899988 578999
Q ss_pred EEeCC--CCCC-c-ee---eeee--cCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCCCCCCceeee------
Q 013884 74 FFDTT--DFPK-G-IL---YRLR--VPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKDLQSQPLARR------ 137 (434)
Q Consensus 74 v~~~~--~~~~-~-~~---~~~~--~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~------ 137 (434)
||+-. +.+. + .. ..+. -..|.++.|+|..-. .+|. .+.++.+|||+.++ ...+.+-
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRIYEAPD---PMNLSQWTLQHEI 158 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEEEecCC---ccccccchhhhhh
Confidence 99863 2211 0 11 1111 236899999997432 2332 35678999999876 2222221
Q ss_pred -------eecccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-CCCCCeEEEEECc
Q 013884 138 -------SFFRCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-RKEGPVHDVQWSY 205 (434)
Q Consensus 138 -------~~~~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~~~~i~~~~wsp 205 (434)
..+.....++.|++.- ..|++....+....++. .||-..-.+.. ...-.| ++..||++++|.|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-----~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-----KIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce-----EEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 1244556789999742 23444332222223332 24443333311 111122 4688999999999
Q ss_pred C-CCE-EEEEEccCCCeEEEEeccc---------------------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884 206 S-GSE-FAVVYGFMPASATIFNKKC---------------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 206 d-g~~-~av~~g~~~~~i~l~d~~~---------------------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
+ |+. -.+..+..|| |+||.++. +.+.++ |.+.+-.+.|+=.|..|++.| .|
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG---dD 309 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG---DD 309 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC---CC
Confidence 6 332 2222466677 99998752 112223 678899999999999999988 77
Q ss_pred CeEEEEEcc---CCEEEEEeeCC
Q 013884 261 GDMAFWDYV---DGKQLGTTRAE 280 (434)
Q Consensus 261 g~i~iwd~~---~~~~i~~~~~~ 280 (434)
|.|++|-.. ..+++..+...
T Consensus 310 G~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 310 GCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ceeeehhhhhhhhheeeeEEecc
Confidence 899999643 23566655543
No 159
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.6e-15 Score=144.22 Aligned_cols=249 Identities=10% Similarity=0.143 Sum_probs=179.5
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeee
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~ 88 (434)
-+.+++... .+-.++|||.....+ + ...+.++..-..++.+++++.. .+.+|.+..+......+.
T Consensus 3 ~~~~~m~~~-----~~t~Lr~~~~~~~~~------h---saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~ 68 (825)
T KOG0267|consen 3 GMEFLMKTK-----RATKLRVWDTREFVA------H---SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG 68 (825)
T ss_pred cccccceee-----eeeccccccchhhhh------h---hhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence 344555544 356788898643221 1 1334355555567778877655 666999877665455678
Q ss_pred ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013884 89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN 168 (434)
Q Consensus 89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~ 168 (434)
|...|.++.|++. ..+|+ .+...+.|++||+.. ...+.+++.|....+.+.|+|-|.+. ++...|...
T Consensus 69 hespIeSl~f~~~-E~Lla-----agsasgtiK~wDlee---Ak~vrtLtgh~~~~~sv~f~P~~~~~---a~gStdtd~ 136 (825)
T KOG0267|consen 69 HESPIESLTFDTS-ERLLA-----AGSASGTIKVWDLEE---AKIVRTLTGHLLNITSVDFHPYGEFF---ASGSTDTDL 136 (825)
T ss_pred cCCcceeeecCcc-hhhhc-----ccccCCceeeeehhh---hhhhhhhhccccCcceeeeccceEEe---ccccccccc
Confidence 8888999999987 34443 356678999999998 78889999999999999999998875 333333333
Q ss_pred ceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEE
Q 013884 169 QSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRW 244 (434)
Q Consensus 169 ~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~ 244 (434)
+.|++. -.| |..... +.+.+..+.|+|+|++++ .|..|..++|||+. ++.+.+| |.+.+..+.|
T Consensus 137 ~iwD~R-------k~G---c~~~~~s~~~vv~~l~lsP~Gr~v~--~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 137 KIWDIR-------KKG---CSHTYKSHTRVVDVLRLSPDGRWVA--SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF 204 (825)
T ss_pred eehhhh-------ccC---ceeeecCCcceeEEEeecCCCceee--ccCCcceeeeeccccccccccccccccccccccc
Confidence 333222 111 111111 356788899999999999 58889999999995 5556666 6889999999
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
+|..-+++.|+ .++++.|||+++.+.|...... .+.+..|+|||+.++++-.
T Consensus 205 hp~e~Lla~Gs---~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 205 HPLEVLLAPGS---SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CchhhhhccCC---CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 99988888888 5679999999999988876554 6667999999999988764
No 160
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=5.4e-13 Score=126.00 Aligned_cols=308 Identities=13% Similarity=0.215 Sum_probs=198.3
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe------cCCeEEEE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM------ATNEIQFF 75 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~------~~~~i~v~ 75 (434)
-+.||-+.+|++-.. ...++|+++ ++..- ....+.....++....|||- +..||+- ....++||
T Consensus 136 ~~k~s~~D~y~ARvv------~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~ 207 (561)
T COG5354 136 VLKFSIDDKYVARVV------GSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL 207 (561)
T ss_pred eeeeeecchhhhhhc------cCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence 467788888777543 357899986 44321 11111111155667788885 3455554 22489999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC---CC--CceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK---GS--PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~---~~--~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
.+..........+....-..+.|.+.++.++.......+ .. ...+.|+++... ..-..+ ..+..+..+.|+
T Consensus 208 sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~-~~~~pVhdf~W~ 283 (561)
T COG5354 208 SIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEK-DLKDPVHDFTWE 283 (561)
T ss_pred EccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceec-cccccceeeeec
Confidence 998544433333332222347888885554443333221 11 246788888652 221111 446678899999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccc
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~d~~~ 228 (434)
|.++...++... .+.+.. ..++.+.-...++ ++.-+.+.|||.++++.+ .|. .-+.+-+||..+
T Consensus 284 p~S~~F~vi~g~-~pa~~s---------~~~lr~Nl~~~~P---e~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~ 349 (561)
T COG5354 284 PLSSRFAVISGY-MPASVS---------VFDLRGNLRFYFP---EQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ccCCceeEEecc-ccccee---------ecccccceEEecC---CcccccccccCcccEEEE-ecCCccccceEEeccCC
Confidence 999998776421 222222 1222222111111 455577899999988876 355 335899999865
Q ss_pred ee--EEEcCCcCeeEEEECCCCCeEEEEecC---CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013884 229 RP--ILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 229 ~~--~~~~~~~~~~~i~~sP~g~~l~~~~~~---~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl 303 (434)
+. +..+......-+.|||||+++.++..+ +.|..|.|||+...+.. ..+.+.|.|.|++..|.++.|++
T Consensus 350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h 423 (561)
T COG5354 350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKH 423 (561)
T ss_pred ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCcccceeeccCCCC
Confidence 43 324444444557899999999886432 34668999998543222 44568999999999999999999
Q ss_pred eeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc
Q 013884 304 QIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 304 ~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+.++.++.+..|.+.-+.......+++|+|.++.+++..
T Consensus 424 ~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~ 463 (561)
T COG5354 424 KVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIE 463 (561)
T ss_pred ccccccccccccccccChhhhcccceeEEecCCCccCChh
Confidence 9999999999999998888888999999999999999863
No 161
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.1e-12 Score=130.71 Aligned_cols=244 Identities=13% Similarity=0.100 Sum_probs=150.0
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .....+...+....|||+ +..+++...+. ....|.+|++.+ +.. .....+......+.|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~--~~~~l~~~~l~~---g~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQ--KRPRIFVQNLDT---GRR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCC--CCCEEEEEECCC---CCE-EEccCCCCCcCCeEEC
Confidence 577777765332 222223345788999999 46665543332 234788888866 322 2233333344568999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~ 229 (434)
|||+.|++..+.+ |...||.++..+.....+. ...+......|+|||+.+++.+... ...+.++|+.+.
T Consensus 252 pDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 252 PDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999988764322 2345888887765433332 2234556789999999998764321 236777787644
Q ss_pred eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
....+ .........|||||++|+.....+....|.++|+.+++..............|||||++|+.++.... ..
T Consensus 322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g---~~ 398 (430)
T PRK00178 322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQG---RG 398 (430)
T ss_pred CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCC---ce
Confidence 43332 22233457899999999987754333468999998875433333222234799999999998886200 12
Q ss_pred cEEEEeecCceeeeee--cccceeeEEEcC
Q 013884 308 GIKIFHHNGSLFFKKM--FDKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~~g~~~~~~~--~~~~~~~~w~p~ 335 (434)
.+.+++.+|....... ..++....|+|.
T Consensus 399 ~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 399 VLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 4677778887554332 235677777764
No 162
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.59 E-value=6.3e-13 Score=129.58 Aligned_cols=262 Identities=10% Similarity=0.113 Sum_probs=182.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCe-eeecC--CCcEEEEecCCeEEEEeC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPS-IRFSS--DEAVACRMATNEIQFFDT 77 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~-~~~S~--d~~~la~~~~~~i~v~~~ 77 (434)
+.+.+-+ +..+++.+ .|++++||+-..++.+. .+.++. .-+.+ ++|-+ .++++..+.|..|.+|..
T Consensus 18 r~v~~~~-~~~i~s~s-----Rd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 18 RAVAVTD-GVCIISGS-----RDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred heeEecC-CeEEeecC-----CCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEeecccceEEEEec
Confidence 3444444 33555555 68999999965555443 233221 22222 45543 334555556789999999
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.........+.|...|.+++.--+ ..+. ++..+.++++|.. ++.......|.+.+-.+..-|++++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~--~~~i-----SgSWD~TakvW~~-----~~l~~~l~gH~asVWAv~~l~e~~~-- 154 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGED--GTLI-----SGSWDSTAKVWRI-----GELVYSLQGHTASVWAVASLPENTY-- 154 (745)
T ss_pred CCCCchhhhhccccceeeeecCCc--CceE-----ecccccceEEecc-----hhhhcccCCcchheeeeeecCCCcE--
Confidence 988776777778777876654333 2322 3567789999998 4455557788888888888888753
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--C
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G 235 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~ 235 (434)
.+...|++++.|.|...+..+ .+ |...|..++.-|++. |+ +++.|+.|++|++.++.+.+. |
T Consensus 155 --vTgsaDKtIklWk~~~~l~tf---~g--------HtD~VRgL~vl~~~~-fl--ScsNDg~Ir~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 155 --VTGSADKTIKLWKGGTLLKTF---SG--------HTDCVRGLAVLDDSH-FL--SCSNDGSIRLWDLDGEVLLEMHGH 218 (745)
T ss_pred --EeccCcceeeeccCCchhhhh---cc--------chhheeeeEEecCCC-eE--eecCCceEEEEeccCceeeeeecc
Confidence 234478999988775443222 22 377899999998754 55 467899999999998888877 6
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+..+.++...+++..++++| .|++++||+.. ++...+..+ +++++..-++|. |++|++ ||-||||.
T Consensus 219 tn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT 286 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFT 286 (745)
T ss_pred ceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc------CceEEEEE
Confidence 77888999888999999998 77899999987 555555554 555666666776 567777 99999998
Q ss_pred ec
Q 013884 314 HN 315 (434)
Q Consensus 314 ~~ 315 (434)
..
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 74
No 163
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.58 E-value=2.9e-13 Score=135.64 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=173.0
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+.+|. ++.++....+.+|++|+..+...... ...|..+|..+++.-. +..+. ++..+.++++|++.+
T Consensus 209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lv-----sgS~D~t~rvWd~~s- 280 (537)
T KOG0274|consen 209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLV-----SGSTDKTERVWDCST- 280 (537)
T ss_pred chhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEE-----EEecCCcEEeEecCC-
Confidence 455588888 55555545667999999887554333 5567788999988764 33332 245567999999888
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~ 208 (434)
+..+.....|...+..+...+ .++ .+...|.+.+.|.-++. ..+.+.++ +.++|+++..+ +.
T Consensus 281 --g~C~~~l~gh~stv~~~~~~~---~~~--~sgs~D~tVkVW~v~n~-~~l~l~~~--------h~~~V~~v~~~--~~ 342 (537)
T KOG0274|consen 281 --GECTHSLQGHTSSVRCLTIDP---FLL--VSGSRDNTVKVWDVTNG-ACLNLLRG--------HTGPVNCVQLD--EP 342 (537)
T ss_pred --CcEEEEecCCCceEEEEEccC---ceE--eeccCCceEEEEeccCc-ceEEEecc--------ccccEEEEEec--CC
Confidence 888888888877766665332 222 22346666665543321 12222221 58999999998 55
Q ss_pred EEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceE
Q 013884 209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT 284 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~ 284 (434)
.++ +|..|+.|.+||.. .+.++++ |.+.|.++.+.+. ..++.|+ +|+.|++||+.+. +++.++.+|..+.
T Consensus 343 ~lv--sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 343 LLV--SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred EEE--EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhhhhhhhcCCcccc
Confidence 555 68889999999986 4555555 8899999988776 7888888 6679999999999 9999999986666
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---ccceeeEEE
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---DKLFQAEWK 333 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~---~~~~~~~w~ 333 (434)
-.....+++|++++. |+.|++||. +|+++....- ..+..+.+.
T Consensus 417 ~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 417 SSLLLRDNFLVSSSA------DGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred cccccccceeEeccc------cccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 666778899999999 999999998 4555555433 334444444
No 164
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.8e-12 Score=127.83 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=145.4
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s 99 (434)
..|.++|...... +.+.... ..+..+.|||||+.|+.... ..|.+||+..... ..+. .. ....+.||
T Consensus 198 ~~l~i~d~dG~~~-~~l~~~~---~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 198 YQLMIADYDGYNE-QMLLRSP---EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFS 270 (448)
T ss_pred eEEEEEeCCCCCc-eEeecCC---CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeEC
Confidence 4688888654433 3333322 45557899999999988632 2688888866432 1222 22 23578999
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
|+ +..+++..... ....|.++++.. + .+..++.+........|+|||+.|++.... . +...||.
T Consensus 271 PD-G~~La~~~~~~--g~~~Iy~~dl~t---g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~----~-----g~~~Iy~ 334 (448)
T PRK04792 271 PD-GKKLALVLSKD--GQPEIYVVDIAT---K-ALTRITRHRAIDTEPSWHPDGKSLIFTSER----G-----GKPQIYR 334 (448)
T ss_pred CC-CCEEEEEEeCC--CCeEEEEEECCC---C-CeEECccCCCCccceEECCCCCEEEEEECC----C-----CCceEEE
Confidence 99 45555433221 224567777754 2 334444444556678999999998775321 1 3346888
Q ss_pred EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcCCc-CeeEEEECCCCCeEEEEec
Q 013884 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~~~-~~~~i~~sP~g~~l~~~~~ 256 (434)
++..++....++.. .......+|+|||+.+++.... .+ .|.++|+.+.....+... ......|+|||++|+....
T Consensus 335 ~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 335 VNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEe
Confidence 88776554455432 2223457999999999875432 33 566678876554444322 2234689999999988775
Q ss_pred CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884 257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
....+.++++|.+ +.....+.. ......+|||
T Consensus 413 ~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 413 YQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 4434568888875 433333333 2445588987
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.3e-13 Score=121.92 Aligned_cols=265 Identities=15% Similarity=0.201 Sum_probs=161.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~ 77 (434)
+.+++|||||+.|++++. .|-.|.||.+.|.....- .... ..+..++|.+||++++.+.. +-++|...
T Consensus 94 ls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~~-~~pK---~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYLL-PHPK---TNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred ceeeeECCCcceEeeeec----ceeEEEEEEeccceeEEe-cccc---cCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 467899999999998873 478899999988765432 2222 44567899999999998853 23344333
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
..........+.....+.+.|||+ +..+++|..- ....|.+|.-.. ....+.|+|.++.|+
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPd-g~~laVwd~~---Leykv~aYe~~l---------------G~k~v~wsP~~qfla 226 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPD-GNWLAVWDNV---LEYKVYAYERGL---------------GLKFVEWSPCNQFLA 226 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCC-CcEEEEecch---hhheeeeeeecc---------------ceeEEEeccccceEE
Confidence 332222222333345678999999 6777777321 112233333211 233556666666654
Q ss_pred EEEEecccccCcee-------ecc---------eeEEEE----------------------ee-----C-CCce---eee
Q 013884 158 AVAQSDVDKTNQSY-------YGE---------SKLNYL----------------------TT-----D-GTHE---GLV 190 (434)
Q Consensus 158 ~~~~~~~d~~~~~~-------~g~---------~~l~~l----------------------~~-----~-~~~~---~~v 190 (434)
+.. .|...+.. .|+ ..++.+ +. . ...+ ..+
T Consensus 227 vGs---yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 227 VGS---YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eec---cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 432 22111100 000 000000 00 0 0000 000
Q ss_pred ec-------CC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCC
Q 013884 191 PL-------RK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 191 ~l-------~~---~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
.+ +. .-.+.-++||+|+.++|.....+|..+.+||++...++.. ...++....|.|.-..|++...+.
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence 01 11 2234569999999999988888999999999986665543 578999999999887777665333
Q ss_pred CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEc
Q 013884 259 LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~ 299 (434)
.+++|.......+.... +.++..+.|.-+|.+++..+.
T Consensus 384 ---rLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 384 ---RLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred ---eEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 79999887656665443 346677999999999998876
No 166
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.5e-13 Score=133.82 Aligned_cols=269 Identities=13% Similarity=0.144 Sum_probs=169.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEe
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~ 76 (434)
.+|+.-++-+.|+.+++ ..++|+.+... .+...+..+..-......|.|.. ++++||++. ++.|.+||
T Consensus 43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 35566677777776663 34566654321 22222211110001222456765 678999885 57999999
Q ss_pred CCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884 77 TTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 77 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
+..+.. .....-|...+..+.|++....++. ++++++.|++||+.. .....+.......+..++|+|.-
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili-----SGSQDg~vK~~DlR~---~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI-----SGSQDGTVKCWDLRS---KKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEE-----ecCCCceEEEEeeec---ccccccccccchhhhceeeccCC
Confidence 987321 1234456667999999998544443 578999999999976 33333222234456788999854
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---e
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~ 229 (434)
....+.+ .| . |...+|.|. .-..+.+.+ .|.|+|.++.|+|++.++| +|+.|+.++|||... .
T Consensus 189 ~~~F~s~---~d-s-----G~lqlWDlR--qp~r~~~k~~AH~GpV~c~nwhPnr~~lA--TGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 189 GNKFASI---HD-S-----GYLQLWDLR--QPDRCEKKLTAHNGPVLCLNWHPNREWLA--TGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred CceEEEe---cC-C-----ceEEEeecc--CchhHHHHhhcccCceEEEeecCCCceee--ecCCCccEEEEeccCCCcc
Confidence 4332221 11 1 333345443 222233333 3689999999999998988 788999999999863 4
Q ss_pred eEEEc-CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-C-ceEEEECC-CCCEEEEEEc
Q 013884 230 PILEL-GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-C-SVTSEWSP-DGRYFMTATT 299 (434)
Q Consensus 230 ~~~~~-~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-~-~~~~~wsp-dg~~l~tas~ 299 (434)
.++.+ ...+++.+.|-|.-. +|++++.. .+..|+|||+... -...++..| . ++.++|.. |-..|.+++.
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 45555 367899999999887 55555543 3578999998643 455666666 3 34489965 4556667776
No 167
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.2e-13 Score=131.88 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=178.8
Q ss_pred eEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884 4 LLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 4 ~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
++..+ |.|+||.|++ .|+.|++|++.... .+.++.+|. .-+..+....+++-|++++ |-+|++|
T Consensus 29 ~Lq~da~~~ryLfTgG-----RDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGG-----RDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEecC-----CCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHhhcCCCceEEecCCceEEEe
Confidence 45555 5788899988 78999999984321 234444432 4455566667887777774 5699999
Q ss_pred eCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-------CCCceeeee-eccccee
Q 013884 76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-------QSQPLARRS-FFRCSTV 145 (434)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-------~~~~i~~~~-~~~~~~~ 145 (434)
+..... .....+-|.+-|.+++........++ ++|.+..|.||++.... ......... ..+..++
T Consensus 101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva-----SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA-----SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred ecccCcchhHhhhhcccchheeeeecccCceeEE-----ecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 987653 22344556677888887333244554 57899999999998531 012222222 6678889
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
+++-|+.|.. +++++..+..+.|.....-..+.+. .|..-|..+..++||+++. +++.|+.|++||
T Consensus 176 SLA~N~t~t~---ivsGgtek~lr~wDprt~~kimkLr---------GHTdNVr~ll~~dDGt~~l--s~sSDgtIrlWd 241 (735)
T KOG0308|consen 176 SLAMNQTGTI---IVSGGTEKDLRLWDPRTCKKIMKLR---------GHTDNVRVLLVNDDGTRLL--SASSDGTIRLWD 241 (735)
T ss_pred eeecCCcceE---EEecCcccceEEeccccccceeeee---------ccccceEEEEEcCCCCeEe--ecCCCceEEeee
Confidence 9999999843 2333334444444332221222111 3577899999999999998 788899999999
Q ss_pred cc---ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcC
Q 013884 226 KK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 226 ~~---~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~ 300 (434)
+. |......|...+-++.-+|+=.++.+|+ .+|.|+.=|+.+. ++...++. +.+..+..+-+..-+-+++.
T Consensus 242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~---rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTt- 317 (735)
T KOG0308|consen 242 LGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG---RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTT- 317 (735)
T ss_pred ccccceeeeEEeccCceEEEeeCCCcceEEecC---CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeec-
Confidence 95 3334445888899999999999999998 5579999998874 33332322 23333444433333344555
Q ss_pred CceeeCCcEEEEee
Q 013884 301 PRLQIDNGIKIFHH 314 (434)
Q Consensus 301 ~rl~~D~~i~iw~~ 314 (434)
|..|+-|..
T Consensus 318 -----ds~I~rW~~ 326 (735)
T KOG0308|consen 318 -----DSSIKRWKL 326 (735)
T ss_pred -----cccceecCC
Confidence 777777754
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.57 E-value=5e-13 Score=124.53 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=174.9
Q ss_pred CCCCeeeecCCCc--EEEEec-CCeEEEEeCCC----CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884 50 TTWPSIRFSSDEA--VACRMA-TNEIQFFDTTD----FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 50 ~~~~~~~~S~d~~--~la~~~-~~~i~v~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
..+.+++|.|... ++|.+. .|+|-+||+.. .........|...|..+.|+|.+...+. +...+|++++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~-----ssSyDGtiR~ 261 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY-----SSSYDGTIRL 261 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee-----eeccCceeee
Confidence 5566999999764 555553 47999999842 1122333445557999999998544433 1355688999
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ 202 (434)
.++.... ...+.+..--....+.+.++.+...+++.. -+|..+++.+.+.+..-....+. +..|.+++
T Consensus 262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~----------~~G~f~~iD~R~~~s~~~~~~lh-~kKI~sv~ 329 (498)
T KOG4328|consen 262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGD----------NVGNFNVIDLRTDGSEYENLRLH-KKKITSVA 329 (498)
T ss_pred eeecchh-hHHHhhcCccceeeeeccccCCCccEEEee----------cccceEEEEeecCCccchhhhhh-hcccceee
Confidence 9987632 222222211222234455555555555431 12444566666666532233333 44899999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEecc---cee---EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CC
Q 013884 203 WSYSGSEFAVVYGFMPASATIFNKK---CRP---ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DG 271 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~i~l~d~~---~~~---~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~----~~ 271 (434)
++|-..++.. +++.|.+++|||++ .+. +.++ |...|++++|||.|-.|++.+.|+ +|+|||.. .-
T Consensus 330 ~NP~~p~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 330 LNPVCPWFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKD 405 (498)
T ss_pred cCCCCchhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEeecccccccC
Confidence 9998887776 67889999999986 222 3444 788999999999988888888666 99999984 33
Q ss_pred EEEEEeeCCC-----ce--EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeecccc----eeeEEEcCCCCC
Q 013884 272 KQLGTTRAEC-----SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMFDKL----FQAEWKPVSPDK 339 (434)
Q Consensus 272 ~~i~~~~~~~-----~~--~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~~~~~~~~----~~~~w~p~~~~~ 339 (434)
+...++.+.+ .+ ..+|.||-.+|+++-. -..|-|+|-+|+. +.+.+-++. .-..|+|....+
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence 4444444432 22 2799999999999987 6679999998775 454444332 345799998777
Q ss_pred CCCc
Q 013884 340 FGDI 343 (434)
Q Consensus 340 ~~~~ 343 (434)
+...
T Consensus 480 ~aG~ 483 (498)
T KOG4328|consen 480 AAGG 483 (498)
T ss_pred eccC
Confidence 7664
No 169
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.2e-12 Score=126.36 Aligned_cols=282 Identities=14% Similarity=0.144 Sum_probs=151.6
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
.+.|||||+||.+.+ .|+.|.++|+.+++.+.++.... .. ..+++|+||++++.+ ..+++.|+|..+.+
T Consensus 41 ~~~~s~Dgr~~yv~~-----rdg~vsviD~~~~~~v~~i~~G~---~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 41 GLKFSPDGRYLYVAN-----RDGTVSVIDLATGKVVATIKVGG---NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEE-TT-SSEEEEEE-----TTSEEEEEETTSSSEEEEEE-SS---EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred EEEecCCCCEEEEEc-----CCCeEEEEECCcccEEEEEecCC---Cc-ceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 367999999999988 57899999999999999987653 22 388999999999877 46899999998865
Q ss_pred Cceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCC
Q 013884 82 KGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGS 153 (434)
Q Consensus 82 ~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G 153 (434)
........ ...+..+.-+|.....+. -.-+ .+.|.+.++.. ...+..... ...--....|+|+|
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv-~lkd----~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV-NLKD----TGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE-EETT----TTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTS
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEE-EEcc----CCeEEEEEecc---ccccceeeecccccccccccCccc
Confidence 42222111 124556666776332332 2222 24666667655 333322221 11223467899999
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecC---CCCCeE-------EEEECcC--CCEEEEEEccCCCe
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR---KEGPVH-------DVQWSYS--GSEFAVVYGFMPAS 220 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~---~~~~i~-------~~~wspd--g~~~av~~g~~~~~ 220 (434)
+++++.+.. .+ .+-.++....... .+... +++++. ...|.-. +.......|.. .
T Consensus 184 ry~~va~~~-sn----------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~--~ 250 (369)
T PF02239_consen 184 RYFLVAANG-SN----------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD--P 250 (369)
T ss_dssp SEEEEEEGG-GT----------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----T
T ss_pred ceeeecccc-cc----------eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC--c
Confidence 998764322 11 1222222221100 01110 122222 2224322 22221222332 3
Q ss_pred EEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCCCCE
Q 013884 221 ATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRY 293 (434)
Q Consensus 221 i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspdg~~ 293 (434)
+.++|.. .+.+.++ ..++ ..+.-+|+++++.+..+ +...+.|.++|.++.+.+.++.. . .+.+++|++||++
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 4456653 4455544 3344 77888999999999822 22357999999999988877643 2 3888999999999
Q ss_pred EEEEEcCCceeeCC-cEEEEeec-Cceeee
Q 013884 294 FMTATTAPRLQIDN-GIKIFHHN-GSLFFK 321 (434)
Q Consensus 294 l~tas~~~rl~~D~-~i~iw~~~-g~~~~~ 321 (434)
+..+.-. .+ .|.|+|-. .+++..
T Consensus 330 v~vS~~~-----~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 330 VWVSVWD-----GNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEEEE-------TTEEEEEETTTTEEEEE
T ss_pred EEEEEec-----CCCEEEEEECCCcEEEEE
Confidence 9887763 33 69999874 344443
No 170
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.6e-12 Score=127.03 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=146.3
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s 99 (434)
..|.++|...+. .+.+.... ..+..+.|||||+.|++... ..|.+|++..... ..+. .. .+..+.||
T Consensus 179 ~~l~~~d~~g~~-~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 179 YTLQRSDYDGAR-AVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWS 251 (430)
T ss_pred eEEEEECCCCCC-ceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEEC
Confidence 358888876554 34443322 34458899999999988642 3789999876432 1221 22 34468999
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
|+ +..+++..... ....|.++++.+ + ....++.+........|+|||+.|++.... . |...||.
T Consensus 252 pD-G~~la~~~~~~--g~~~Iy~~d~~~---~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~----~-----g~~~iy~ 315 (430)
T PRK00178 252 PD-GSKLAFVLSKD--GNPEIYVMDLAS---R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDR----G-----GKPQIYK 315 (430)
T ss_pred CC-CCEEEEEEccC--CCceEEEEECCC---C-CeEEcccCCCCcCCeEECCCCCEEEEEECC----C-----CCceEEE
Confidence 99 45555433221 224677778765 2 233344444455678999999998876321 1 2335888
Q ss_pred EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecC
Q 013884 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~ 257 (434)
++..++....+... ........|+|||+.+++..... ...+.++|+.+.....+.. .......|||||++|+.+...
T Consensus 316 ~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 316 VNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence 87766544444432 22334678999999999864322 1268888987655554422 223357899999999888754
Q ss_pred CCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884 258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
...+.|++++...... ..+.. ..+...+|||
T Consensus 395 ~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 395 QGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 4446788888865433 22222 2344578887
No 171
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=6.6e-13 Score=123.84 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=142.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ecCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~ 80 (434)
|.+++.||||+||+|.+ .|..|.||+..+++.++.|.++. ..|.+++|-..-..|.+ +.|..|++|++..+
T Consensus 205 il~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred eEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccc---cceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 57899999999999988 78999999999999999987765 67778999876555544 46789999999987
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...|.++....- ...+.+ ++.+.++++|.++.. .+.+..- +....-++++-.+ .+++.
T Consensus 277 s~vetlyGHqd~v~~IdaL~r-eR~vtV-----GgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~In~-~Hfvs-- 343 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSR-ERCVTV-----GGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFIND-EHFVS-- 343 (479)
T ss_pred HHHHHHhCCccceeeechhcc-cceEEe-----ccccceeEEEecccc--ceeeeeC--CCCCeeeEEEecc-cceee--
Confidence 755556677777877755432 233332 467789999999873 2222211 1111112222211 12111
Q ss_pred EecccccCceeecceeEEEEeeCCCce-eee-----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLV-----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v-----------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
... .|. |+++++..... ... ++..+.-|++++-.|..+.|| +|+.++.|++|-+..
T Consensus 344 -GSd-------nG~--IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~a--sGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 344 -GSD-------NGS--IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLA--SGSWSGCVRLWKIED 411 (479)
T ss_pred -ccC-------Cce--EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEE--ecCCCCceEEEEecC
Confidence 101 122 22222211110 000 111123688999999999888 799999999997643
Q ss_pred -----eeEEEc-CCcCeeEEEECCCCCeEEEE
Q 013884 229 -----RPILEL-GSGPYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 229 -----~~~~~~-~~~~~~~i~~sP~g~~l~~~ 254 (434)
+++.++ -.+.||.|+|+++|++|++|
T Consensus 412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 344444 37889999999999977665
No 172
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=6.7e-12 Score=124.64 Aligned_cols=230 Identities=16% Similarity=0.189 Sum_probs=142.2
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
.|.++|...... .........+....|||+ +..+++..... ....|.+|++.+ +.. .....+......+.|+
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spd-g~~la~~~~~~--~~~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPD-GQKLAYVSFES--GKPEIYVQDLAT---GQR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCC-CCEEEEEEcCC--CCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence 688888754332 212222224778899999 56665543322 236789999876 322 2233344445678999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.++..+.....+. ...+.....+|+|||+.+++.+... ...|.++|+.+.
T Consensus 243 pDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 243 PDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CCCCEEEEEECCC---------CCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999987753221 2335787777665333332 2234455789999999998754321 226788888654
Q ss_pred eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
....+ +......+.|||+|++|+.+..+.....|.+||+.++...............|+|||++|+.++.... ..
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~---~~ 389 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGG---RG 389 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC---cE
Confidence 44333 44556678999999999988755434589999998764433322223344799999999999887210 12
Q ss_pred cEEEEeecCceeee
Q 013884 308 GIKIFHHNGSLFFK 321 (434)
Q Consensus 308 ~i~iw~~~g~~~~~ 321 (434)
.+.+.+.+|.....
T Consensus 390 ~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 390 VLGLVSTDGRFRAR 403 (417)
T ss_pred EEEEEECCCceeeE
Confidence 35566667765443
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=6.7e-12 Score=114.37 Aligned_cols=230 Identities=15% Similarity=0.242 Sum_probs=160.3
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013884 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP 133 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~ 133 (434)
.+.|..|...|..+..+-.++|+...+++..........|...-||.. ++|+... .++..++++++.. ...
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~---~qpr~Lkv~~~Kk---~~~ 80 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSI---KQPRKLKVVHFKK---KTT 80 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEec---CCCceEEEEEccc---Cce
Confidence 556888999999898889999999887652211122223556667644 3444322 4567899999877 677
Q ss_pred eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCeEEEEECcCCCE
Q 013884 134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~~~wspdg~~ 209 (434)
|+...| ...+..++.|. +.|+++... .+|..++... ...-++ ++...+.++..++.+.+
T Consensus 81 ICe~~f-pt~IL~VrmNr--~RLvV~Lee-------------~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 81 ICEIFF-PTSILAVRMNR--KRLVVCLEE-------------SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred EEEEec-CCceEEEEEcc--ceEEEEEcc-------------cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence 777654 55778888876 455555321 1344443332 111111 12344566666667779
Q ss_pred EEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----C
Q 013884 210 FAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----C 281 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~ 281 (434)
+|+-.....|.|.|||+. ..++.. .|.+++-+++|||+|.+||+|+ ..| .|+|+++.+|+.+..+... .
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~v~~G~kl~eFRRG~~~~~ 220 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFSVPEGQKLYEFRRGTYPVS 220 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEEcCCccEeeeeeCCceeeE
Confidence 997655567899999984 444443 4899999999999999999998 445 5789999999999888764 3
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
+..++||||+.+|++++. -.+|+||.+....
T Consensus 221 IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN------TETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence 445999999999999888 8999999987665
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.2e-13 Score=117.41 Aligned_cols=209 Identities=17% Similarity=0.251 Sum_probs=149.0
Q ss_pred CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceee-e
Q 013884 114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-V 190 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v 190 (434)
.+.++.|+|+.+.+..+...+..+..|...+.++.|-. -|+.|+ ++ +|.|..-||.-+ .+..... .
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA---Sc-------sYDgkVIiWke~-~g~w~k~~e 97 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA---SC-------SYDGKVIIWKEE-NGRWTKAYE 97 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee---Ee-------ecCceEEEEecC-CCchhhhhh
Confidence 35567999999988654478899999999999999976 577543 33 344443344322 1111111 1
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCcCeeEEEECCC---C-----------Ce
Q 013884 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KF 250 (434)
Q Consensus 191 ~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~~~~~i~~sP~---g-----------~~ 250 (434)
-..++..|++++|.|.+--|.+.+++.|++|.+++.+.. .+...|.-.+|+++|.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 123578999999999887777778899999999876533 334458889999999996 5 56
Q ss_pred EEEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecCc-----
Q 013884 251 LCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGS----- 317 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg----~~l~tas~~~rl~~D~~i~iw~~~g~----- 317 (434)
|++||.|| .|+||+..++ +.-.++.+| .+.+++|.|.- .+|++++. |+.+.||....+
T Consensus 178 lvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq------Dg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 178 LVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ------DGTVIIWTKDEEYEPWK 248 (299)
T ss_pred eeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC------CCcEEEEEecCccCccc
Confidence 99999776 9999998875 333446666 55669999974 57899998 999999998643
Q ss_pred -eeeeeecccceeeEEEcCCCCCCCC
Q 013884 318 -LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 318 -~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+.+.-.+.+|.++|++-+..|-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEe
Confidence 1111223569999999988665544
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.4e-12 Score=128.84 Aligned_cols=274 Identities=15% Similarity=0.091 Sum_probs=167.1
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc---EEEEe-cCCeEEEEeCCCC
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA---VACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~---~la~~-~~~~i~v~~~~~~ 80 (434)
-.||+|+++|+... +.+|.||.+.||+++..+..+. ..+..+.+-|... ++.+. .+|+|++||-.+.
T Consensus 22 avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccccCCcEEEEee------CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 36999999998765 6789999999999999765543 6666777776443 33344 6799999998875
Q ss_pred CCceeeeeecCCeeEEEEeCCC--CCeEE--------EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 81 PKGILYRLRVPGVAAFEVSKAP--GSHVA--------VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~--~~~ia--------~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
..........+ +....+.|.- ....+ ++...+.....+++-+.++... ....-.+..+.. ...+..+
T Consensus 93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-~~~~d~~~~~~~-~~~I~~~ 169 (792)
T KOG1963|consen 93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-SAKGDFLKEHQE-PKSIVDN 169 (792)
T ss_pred EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-ccchhhhhhhcC-CccEEEc
Confidence 54333222222 2222221210 00000 0111111122222222222210 000000011111 3567788
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCc----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~----~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~ 226 (434)
+.|....+.... . ++.+...... .....+.|...+.++++||+++.+| +|.++|+|.+|.-
T Consensus 170 ~~ge~~~i~~~~----~---------~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d 234 (792)
T KOG1963|consen 170 NSGEFKGIVHMC----K---------IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRD 234 (792)
T ss_pred CCceEEEEEEee----e---------EEEEEecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEec
Confidence 888876654322 1 1222211111 1111223344588999999999999 6999999999943
Q ss_pred -c------ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEE
Q 013884 227 -K------CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 227 -~------~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas 298 (434)
. ...+...|...++++.||++|.+|++|| ..|.+-+|.+.+++.-.... +..+.++.||||+.+.++..
T Consensus 235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred cccccccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe
Confidence 2 2234455899999999999999999999 55799999998875222222 23566699999999999999
Q ss_pred cCCceeeCCcEEEEee
Q 013884 299 TAPRLQIDNGIKIFHH 314 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~ 314 (434)
. ||.|.+-+.
T Consensus 312 ~------DNqI~li~~ 321 (792)
T KOG1963|consen 312 E------DNQIHLIKA 321 (792)
T ss_pred c------CceEEEEec
Confidence 9 999999887
No 176
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=9.3e-13 Score=123.82 Aligned_cols=253 Identities=14% Similarity=0.186 Sum_probs=160.4
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---E--EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---A--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~ 76 (434)
.++.|+... +|++.+. ..|+.+++|. +.|+ . ++...+. .. .|+.-.....|+++++ ++.|+|||
T Consensus 38 ~s~~w~~~n-~lvvas~---~gdk~~~~~~-K~g~~~~Vp~~~k~~gd----~~-~Cv~~~s~S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 38 FSFNWQRRN-FLVVASM---AGDKVMRIKE-KDGKTPEVPRVRKLTGD----NA-FCVACASQSLYEISGGQSGCVKIWD 107 (673)
T ss_pred eeeeccccc-eEEEeec---CCceeEEEec-ccCCCCccceeeccccc----hH-HHHhhhhcceeeeccCcCceeeehh
Confidence 445565543 4776663 3689999996 4444 2 1222111 11 2555555558888875 46999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee-EEEECCCCCe
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV-QLNWNRGSTG 155 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~-~~~ws~~G~~ 155 (434)
+.........+-|...|..+.+.-. +.+||.. ...+.|.|..+.+ ++.-........+++ -+.+++..++
T Consensus 108 l~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsv-----s~gGdiiih~~~t---~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 108 LRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASV-----SDGGDIIIHGTKT---KQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred hHHHHHhhhccCCcceeEEEEecCC-cceeEEe-----ccCCcEEEEeccc---CccccceecCCCCeEEEeecccccce
Confidence 8753222223344556777766654 5666643 2335677888765 333333333333444 7889999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 233 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~ 233 (434)
++.+++. .|..+|| ++.|.. ..... .|..|...++|+|....+.+ +-.+|.+|.+||.+.+...+
T Consensus 179 lL~~asd---------~G~Vtlw--Dv~g~s-p~~~~~~~HsAP~~gicfspsne~l~v-sVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 179 LLSIASD---------KGAVTLW--DVQGMS-PIFHASEAHSAPCRGICFSPSNEALLV-SVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eeEeecc---------CCeEEEE--eccCCC-cccchhhhccCCcCcceecCCccceEE-EecccceEEEeecccccccc
Confidence 8887633 2544444 444542 22222 25789999999997766665 45679999999997554332
Q ss_pred -c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC
Q 013884 234 -L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD 290 (434)
Q Consensus 234 -~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd 290 (434)
+ -..|..+++|+|+|.+||.|. ..|.|..||++.. ..+....+| .+++++|-|.
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eeeecCCcceeeecCCceEEEeec---CCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 2 367889999999999999887 7799999999865 445555555 4666888665
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4e-13 Score=124.23 Aligned_cols=200 Identities=13% Similarity=0.133 Sum_probs=126.4
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
.+++|+++|+.|+|+. .|+.++||+..+...+..+..+ ...+..+.|||||++|++.+.+..+||++.+...
T Consensus 148 k~vaf~~~gs~latgg-----~dg~lRv~~~Ps~~t~l~e~~~---~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-----TDGTLRVWEWPSMLTILEEIAH---HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeecc-----ccceEEEEecCcchhhhhhHhh---cCccccceeCCCCcEEEEecCCceEEEEeccCch
Confidence 3689999999999999 8999999998776655554443 3778899999999999999878999999988532
Q ss_pred ceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 83 GILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 ~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
..... -....+..+.|+.++.. ..+++...... ...+.... --.|+.+ +.+
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~-------------~~l~laa~~~~--~~~v~~~~-------~~~w~~~-~~l---- 272 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQ-------------ETLRLAASQFP--GGGVRLCD-------ISLWSGS-NFL---- 272 (398)
T ss_pred hhhcCCcccchhhhhceecccCCC-------------ceEEEEEecCC--CCceeEEE-------eeeeccc-ccc----
Confidence 11111 00112333333333210 22233222110 00000000 0011111 100
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----EcCC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~~~~ 236 (434)
.....+.....|.+++.|+||+++|+ |.|++.|.+|+...-+.. +.|.
T Consensus 273 --------------------------~~~~~~~~~~siSsl~VS~dGkf~Al--GT~dGsVai~~~~~lq~~~~vk~aH~ 324 (398)
T KOG0771|consen 273 --------------------------RLRKKIKRFKSISSLAVSDDGKFLAL--GTMDGSVAIYDAKSLQRLQYVKEAHL 324 (398)
T ss_pred --------------------------chhhhhhccCcceeEEEcCCCcEEEE--eccCCcEEEEEeceeeeeEeehhhhe
Confidence 00011112458899999999999996 889999999998643333 3488
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..|+.+.|+||.++++..++++ ++.+.-+
T Consensus 325 ~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred eeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 8999999999999999987666 5555543
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=3.8e-11 Score=115.36 Aligned_cols=256 Identities=13% Similarity=0.107 Sum_probs=151.3
Q ss_pred EEEecCCeEEEEeCCCCCC-ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884 64 ACRMATNEIQFFDTTDFPK-GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
++...++.|.+|++..... .....+. ..+...+.++|++ ..+.+-. ...+.|.+|++.....-..+.... ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~-~~lyv~~----~~~~~i~~~~~~~~g~l~~~~~~~-~~ 79 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK-RHLYVGV----RPEFRVLSYRIADDGALTFAAESP-LP 79 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC-CEEEEEE----CCCCcEEEEEECCCCceEEeeeec-CC
Confidence 3334568999999963222 1222332 2457788999984 4443221 124678889986310001122222 22
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
...+.+.++|+|+.|++... .+ +...+|.++.++.....+ .+......+.++++|+|+++++ +...++.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~--~~-------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~ 149 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASY--NA-------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDR 149 (330)
T ss_pred CCceEEEECCCCCEEEEEEc--CC-------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCE
Confidence 34578999999998766421 11 111233332222211111 1222345688999999988876 4667789
Q ss_pred EEEEeccc-eeEE-------Ec-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--C--EEEEEeeCC-------
Q 013884 221 ATIFNKKC-RPIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--G--KQLGTTRAE------- 280 (434)
Q Consensus 221 i~l~d~~~-~~~~-------~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~--~--~~i~~~~~~------- 280 (434)
|.+||++. ..+. .. .......+.|+|+|++++++..+ ++.|.+||++. + +.+..+...
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 99999864 2111 11 12233578999999999888642 47999999873 3 334333211
Q ss_pred -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Ccee---eeeec-ccceeeEEEcCCCCCCCC
Q 013884 281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF---FKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~---~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
....+.++|||++|+++... ++.|.+|+++ +..+ ..... .....+.++|++..+|..
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred ccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence 22348899999999998542 8999999993 3221 11111 134578899999888865
No 179
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=3e-11 Score=119.98 Aligned_cols=255 Identities=13% Similarity=0.097 Sum_probs=149.2
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY 86 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~ 86 (434)
+..++............|.++|...+. .+.+.... ..+..+.|||||++|++... .+|++|++....... .
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~---~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~ 229 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDGAN-PQTITRSR---EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-V 229 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCCCC-CEEeecCC---CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-e
Confidence 444554442222234578899875443 44444332 23447899999999998742 489999987643211 1
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
......+..+.|+|++ ..+++.... .....|.+|++.+ + ....+..+........|+|+|+.|++....
T Consensus 230 ~~~~~~~~~~~~spDg-~~l~~~~~~--~~~~~i~~~d~~~---~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~---- 298 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDG-SKLAVSLSK--DGNPDIYVMDLDG---K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDR---- 298 (417)
T ss_pred ecCCCCccceEECCCC-CEEEEEECC--CCCccEEEEECCC---C-CEEECCCCCCCCCCEEECCCCCEEEEEECC----
Confidence 1112235568999984 444432221 2234677788765 2 233333344444577899999998775321
Q ss_pred cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcC-CcCeeEEEE
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRW 244 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~-~~~~~~i~~ 244 (434)
. +...||.++..+.....+.. ....+..+.|+|+|+.+++.....+ ..|.++|+.......+. ........|
T Consensus 299 ~-----g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~ 372 (417)
T TIGR02800 299 G-----GSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF 372 (417)
T ss_pred C-----CCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence 1 22357888776654333332 2455678999999999987543321 17888888765444442 223455789
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013884 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws 288 (434)
+|||++|+.+..++....+++.+... +....+..+ .+..+.||
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTDG-RFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECCC-ceeeECCCCCCCcCCCCCC
Confidence 99999998887654344677776544 333333322 33335553
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7.1e-12 Score=113.87 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=147.2
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-C---cE--------EEEEeecCcCCCCCCeeeecCCCcEEEEe-
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-G---EA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRM- 67 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-g---~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~- 67 (434)
|.||+|=|.+ +-|+.+. ..-|.||.... + .. ..-+.... | ..|++++|.+||..++++
T Consensus 143 vtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS 214 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTAS 214 (445)
T ss_pred eeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhheeCCC-C-ceeeEEEEcCCCCEEeecc
Confidence 6789999865 4555544 35688997632 1 11 11122222 2 678899999999999988
Q ss_pred -cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884 68 -ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 68 -~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
++..|.|||.+.............++.-+.|||+++.++|. ..++..++|+..+. -....... ....+..
T Consensus 215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA------t~davfrlw~e~q~--wt~erw~l-gsgrvqt 285 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA------TCDAVFRLWQENQS--WTKERWIL-GSGRVQT 285 (445)
T ss_pred cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe------cccceeeeehhccc--ceecceec-cCCceee
Confidence 45699999998876544455667889999999997766664 34567899965431 11111111 2235667
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----------ceeeee--cC------C----CCCeEEEEEC
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------HEGLVP--LR------K----EGPVHDVQWS 204 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~~~~v~--l~------~----~~~i~~~~ws 204 (434)
..|+|+|..|++..+. +..||.+...+. ....+. |. . -|+++.++|.
T Consensus 286 acWspcGsfLLf~~sg-----------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD 354 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSG-----------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD 354 (445)
T ss_pred eeecCCCCEEEEEEcC-----------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC
Confidence 8899999999986543 333443322111 011111 11 0 4788999999
Q ss_pred cCCCEEEEEEccCCC------eEEEEeccceeEEEc------CCcCeeEEEECC---CCCeEEEEecCCCCCeEEEEEc
Q 013884 205 YSGSEFAVVYGFMPA------SATIFNKKCRPILEL------GSGPYNTVRWNP---KGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 205 pdg~~~av~~g~~~~------~i~l~d~~~~~~~~~------~~~~~~~i~~sP---~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
|.|.++|+++-..+. .|.+||.+..+..++ ...+-.-|.|+| +|.+|.++- ..|.+.-|++
T Consensus 355 psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW---sTGriq~ypl 430 (445)
T KOG2139|consen 355 PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW---STGRIQRYPL 430 (445)
T ss_pred CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe---ccCceEeeee
Confidence 999999998866552 466788876665554 122234466666 455666554 3456666654
No 181
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=5.9e-12 Score=111.82 Aligned_cols=255 Identities=13% Similarity=0.101 Sum_probs=169.3
Q ss_pred CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.+.++.||| ...+++.+ =|++|++|++.+.... ....-+...|-++.|+-++ ..+. .++.++.+++|++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf-----~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVF-----SGGCDKQAKLWDL 101 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEE-----eeccCCceEEEEc
Confidence 6677899999 44455344 5899999999874221 1122334468899999885 3333 2567789999999
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp 205 (434)
.+ + .+.+...|.+.+..+.|-+...+-+++ .+..|++.+.|+..+. ....++.-.+.++++..-.
T Consensus 102 ~S---~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~-TGSWDKTlKfWD~R~~----------~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 102 AS---G-QVSQVAAHDAPVKTCHWVPGMNYQCLV-TGSWDKTLKFWDTRSS----------NPVATLQLPERVYAADVLY 166 (347)
T ss_pred cC---C-CeeeeeecccceeEEEEecCCCcceeE-ecccccceeecccCCC----------CeeeeeeccceeeehhccC
Confidence 87 4 667788899999999998877755544 3457888887654321 2222333356666665432
Q ss_pred CCCEEEEEEccCCCeEEEEeccceeEE-Ec----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee
Q 013884 206 SGSEFAVVYGFMPASATIFNKKCRPIL-EL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR 278 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~~~~~-~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~ 278 (434)
.++++ +..+..|.+|+++..+.. .. -+-.+.+|+..+|....++|+ ..|.+.|..++.+ +.-.++.
T Consensus 167 ---pm~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs---iEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 167 ---PMAVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS---IEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ---ceeEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee---ecceEEEEecCCCCccCceeEE
Confidence 24444 344679999999644321 11 244567888888888888888 7789999988765 2222222
Q ss_pred CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-ee--eeecccceeeEEEcCCCC
Q 013884 279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FF--KKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 279 ~~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~--~~~~~~~~~~~w~p~~~~ 338 (434)
.| .+..++|+|.-..|+|+++ ||++..||-+-+. |. +.+...+.+..++-.+..
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 22 2344999999999999999 9999999986542 22 223345666666665543
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.49 E-value=3.9e-12 Score=123.50 Aligned_cols=250 Identities=20% Similarity=0.283 Sum_probs=180.5
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+..++|-|||..|+.+.++.+.+||.+++......+.|.+-|..++||-+ +..+| +++.+..|-+|+-..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFA-----SG~aDK~VI~W~~kl--- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFA-----SGSADKSVIIWTSKL--- 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccC-Cceec-----cCCCceeEEEecccc---
Confidence 344789999999999999999999999998887888889999999999998 45555 567788999998643
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~ 210 (434)
+-..+.-|...+-+|.|||-...|+.++-.+. .+|.-+ . .....-.....|.+.+|..||.+|
T Consensus 85 --EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-----------glWS~~--q--K~V~K~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 85 --EGILKYSHNDAIQCMSFNPITHQLASCSLSDF-----------GLWSPE--Q--KSVSKHKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred --cceeeeccCCeeeEeecCchHHHhhhcchhhc-----------cccChh--h--hhHHhhhhheeEEEeeecCCCcEE
Confidence 12233446677788999998777655432221 122111 0 000011114678899999999999
Q ss_pred EEEEccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCCEEEEEee--
Q 013884 211 AVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDGKQLGTTR-- 278 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~-----~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-- 278 (434)
++ |-.+|+|.|-+..+++...+ ...++-+|+|+|... .+++...+. ++.++.+ +|+.|..-.
T Consensus 148 al--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~L-sG~~Igk~r~L 221 (1081)
T KOG1538|consen 148 AL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQL-SGKQIGKDRAL 221 (1081)
T ss_pred EE--eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEe-cceeecccccC
Confidence 96 77789999988766554333 367899999999642 667776554 7777766 455665332
Q ss_pred CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-ecc-cceeeEEEcCCCC
Q 013884 279 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFD-KLFQAEWKPVSPD 338 (434)
Q Consensus 279 ~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-~~~-~~~~~~w~p~~~~ 338 (434)
+..+.++.+-|+|+|++.|++ |+.+++|.-.|-.+-.. .++ =+|.|.-+|.+..
T Consensus 222 ~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 222 NFDPCCISYFTNGEYILLGGS------DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred CCCchhheeccCCcEEEEccC------CCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence 236677899999999999999 99999999988766543 333 3788888887654
No 183
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=8.8e-13 Score=116.05 Aligned_cols=139 Identities=22% Similarity=0.421 Sum_probs=101.9
Q ss_pred EEEEECcCCCEEEEEEcc-CC-------CeEEEEec--cceeEEE--c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884 199 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~-~~-------~~i~l~d~--~~~~~~~--~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i 265 (434)
-.+.|+|+|+.+++.... .+ +...||.+ +..++.. + ..++|.+++|+|+|+.+|+.. |..+..|.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence 468899999999987652 11 23445544 3333333 3 356799999999999877653 235569999
Q ss_pred EEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013884 266 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 266 wd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
||++ ++.+..+.......+.|||+|++|++|+.. ...+.+.+||+.. +.+...+......+.|+|++..++..
T Consensus 88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 9996 777777877677779999999999999861 1135699999964 45555555678899999999998876
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=2.9e-11 Score=106.98 Aligned_cols=275 Identities=11% Similarity=0.197 Sum_probs=168.0
Q ss_pred cceEEec--CCCc-EEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCc-----EEEEecCCe
Q 013884 2 LLLLTCL--RVGL-IIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEA-----VACRMATNE 71 (434)
Q Consensus 2 V~~l~fS--P~g~-~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-----~la~~~~~~ 71 (434)
+.++.|| |+-+ +|+.++ +.....+.|.|-.+ .+++.+..-... +...++.+.|.||.+ +||+ .++.
T Consensus 47 lya~~Ws~~~~~~~rla~gS-~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLAT-s~D~ 122 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGS-FIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLAT-SSDF 122 (364)
T ss_pred eeeeccccCCCcceeEEEee-eccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhhc-ccCe
Confidence 4567777 4444 444433 22222345555543 455554332111 235666889999874 4443 4579
Q ss_pred EEEEeCCCCCCcee---------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 72 IQFFDTTDFPKGIL---------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 72 i~v~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+++|.+...+.... .......+++|.|.--...+|.+ ...+-++.||++.....+....++-.|..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt-----SSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT-----SSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe-----ecccCeEEEEEEeeccccceeeEEEecCc
Confidence 99999874221110 11112357888887664455553 34556899999987322334667778999
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-cCC-CCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRK-EGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~-~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
++..++|...|..+. ++...|.+.+ ++.|..... ..++- -+. ..+...++|++..-.+.....-...+
T Consensus 198 EV~DIaf~~~s~~~F--ASvgaDGSvR-------mFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVF--ASVGADGSVR-------MFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred ceeEEEeccCccceE--EEecCCCcEE-------EEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 999999999888764 4444555555 444432221 11111 111 45778899998664433212323348
Q ss_pred EEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEE------EEEe-eCCCceEEEEC
Q 013884 221 ATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQ------LGTT-RAECSVTSEWS 288 (434)
Q Consensus 221 i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~------i~~~-~~~~~~~~~ws 288 (434)
|.|.|++ +.++..+ |.+.||.|+|.|+.. .||++|.| .++-|||+...-. +..+ .++.+..+.|+
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS 344 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc---ceEEEEecccccccCCCCchhhhhccceeeeeeec
Confidence 9999997 6666666 899999999999875 89999944 5999999986421 2222 23467779999
Q ss_pred C-CCCEEEEEE
Q 013884 289 P-DGRYFMTAT 298 (434)
Q Consensus 289 p-dg~~l~tas 298 (434)
| .+..|+.+.
T Consensus 345 ~~~~Dwiai~~ 355 (364)
T KOG0290|consen 345 SSQPDWIAICF 355 (364)
T ss_pred ccCCCEEEEEe
Confidence 5 456777665
No 185
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=2.8e-09 Score=102.87 Aligned_cols=261 Identities=15% Similarity=0.215 Sum_probs=159.1
Q ss_pred CCCcEEEEEc--CCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEEeCCCC--CCceeeeee--c
Q 013884 24 QEKNVILWKT--ETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFFDTTDF--PKGILYRLR--V 90 (434)
Q Consensus 24 ~d~~v~iWd~--~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~~~~~~--~~~~~~~~~--~ 90 (434)
..+.|.+|++ .+|+. +..+.... .-. .+.++|++++|.... .+.|..|++... ......... .
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~--~Ps--~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGE--NPS--WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESS--SEC--CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCC--CCc--eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 3478888887 56654 23322221 123 478999999988773 358999998764 211222222 2
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-ee-------------cccceeEEEECCCCCeE
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SF-------------FRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~-------------~~~~~~~~~ws~~G~~l 156 (434)
.....++++|++ .++.+.. -..+.|.++++... ..+... .. ......++.++|+|+++
T Consensus 87 ~~p~~i~~~~~g-~~l~van----y~~g~v~v~~l~~~---g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 87 SSPCHIAVDPDG-RFLYVAN----YGGGSVSVFPLDDD---GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp SCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTT---SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred CCcEEEEEecCC-CEEEEEE----ccCCeEEEEEccCC---cccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 234567888884 4333322 12457888888762 222111 10 12334578999999998
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ce
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR 229 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-----~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~ 229 (434)
++.- - |...|+.++..... ...+.+.....-+.++|+|||+++.++ ....+.|.+|+.. ..
T Consensus 159 ~v~d-l----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 159 YVPD-L----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEEE-T----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTT
T ss_pred EEEe-c----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCC
Confidence 7631 1 22335555543332 122344555667899999999988875 6678899999875 21
Q ss_pred e---EEEc---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CC--EEEEEee--CCCceEEEECCCCC
Q 013884 230 P---ILEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTR--AECSVTSEWSPDGR 292 (434)
Q Consensus 230 ~---~~~~---~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~--~~i~~~~--~~~~~~~~wspdg~ 292 (434)
. +... . ......|.+||||++|.++..+. ..|.+|+++ ++ +.+..+. +..+..++++|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence 1 1111 1 12456799999999999988764 689999984 33 4444443 33577899999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec
Q 013884 293 YFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+|+++... ++.|.+|+++
T Consensus 305 ~l~Va~~~-----s~~v~vf~~d 322 (345)
T PF10282_consen 305 YLYVANQD-----SNTVSVFDID 322 (345)
T ss_dssp EEEEEETT-----TTEEEEEEEE
T ss_pred EEEEEecC-----CCeEEEEEEe
Confidence 99999875 8899999983
No 186
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.47 E-value=3.4e-12 Score=112.91 Aligned_cols=204 Identities=17% Similarity=0.278 Sum_probs=139.7
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC--CC-----cee-----eeeecccceeEEEECCCCC
Q 013884 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ--SQ-----PLA-----RRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~--~~-----~i~-----~~~~~~~~~~~~~ws~~G~ 154 (434)
+.|-..|.++.+-+..+.++. +++.++.+.+|++.+.+. .. .++ ..+.|+..+..+.|-|-.+
T Consensus 40 r~HgGsvNsL~id~tegryml-----SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYML-----SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred ccCCCccceeeeccccceEEe-----ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 344456777777666555544 578888999999876331 00 011 1235667778889999777
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-eeEE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-RPIL 232 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~-~~~~ 232 (434)
.+ .++...|++.+.|+..+ + +..+.+.-++.|++-+|||-.. .-.+..|..+.+|++.|+.. ...+
T Consensus 115 Gm--FtssSFDhtlKVWDtnT-l---------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 115 GM--FTSSSFDHTLKVWDTNT-L---------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred ce--eecccccceEEEeeccc-c---------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 65 34556888888775432 1 2223333478999999999654 44444688888999999963 3344
Q ss_pred Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC--------------C--CceEEEECCCCCE
Q 013884 233 EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--------------E--CSVTSEWSPDGRY 293 (434)
Q Consensus 233 ~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~--------------~--~~~~~~wspdg~~ 293 (434)
.+ |.+.|.++.|||...+++..|. -+|.|++||++.. -+...+.. | .+..++|+.||++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 44 8899999999999997665442 5689999998743 22222221 2 2334999999999
Q ss_pred EEEEEcCCceeeCCcEEEEeec
Q 013884 294 FMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+++.++ |+.+++|+..
T Consensus 261 l~~~gt------d~r~r~wn~~ 276 (397)
T KOG4283|consen 261 LASCGT------DDRIRVWNME 276 (397)
T ss_pred hhhccC------ccceEEeecc
Confidence 999999 9999999983
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.7e-11 Score=121.48 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=161.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--Cc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~ 77 (434)
++|.+|||+++|++++. .||.|.||.--. ++ .-.++.+ -|...+.++.||+||.+|.+|+. +-+.+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d-----~dGrI~vw~d~~~~~~~~t~t~lH--WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGD-----SDGRILVWRDFGSSDDSETCTLLH--WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEec-----cCCcEEEEeccccccccccceEEE--ecccccceeEEecCCceEeecccceEEEEEee
Confidence 57899999999999987 789999995322 21 1222221 13478889999999999999965 68899999
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--------ccceeEEEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------RCSTVQLNW 149 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------~~~~~~~~w 149 (434)
....+...-++ ...|..+.+|||++. .++... +..|.+...++......|...... ..=...+..
T Consensus 281 ~T~~kqfLPRL-gs~I~~i~vS~ds~~-~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 281 ETGKKQFLPRL-GSPILHIVVSPDSDL-YSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred cCCCccccccc-CCeeEEEEEcCCCCe-EEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 87553222222 234889999999544 333332 446666666542211222211111 122234566
Q ss_pred CCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------CCC--
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------MPA-- 219 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~------~~~-- 219 (434)
+|.-+.+++.+ .....+.| |...++|.+.+.+.....-.....-++..++.+-.|..++-+... .++
T Consensus 354 dpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 354 DPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV 430 (792)
T ss_pred cCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence 77333332221 22223333 333344444432211000000012356677777788877743222 222
Q ss_pred eEEEEeccce----eEE-E--c-CC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC------------EEEEEe
Q 013884 220 SATIFNKKCR----PIL-E--L-GS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------KQLGTT 277 (434)
Q Consensus 220 ~i~l~d~~~~----~~~-~--~-~~-~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~------------~~i~~~ 277 (434)
.+++|--..+ .+. . . |. ..+-++..+|-.. .+++++ .+|.++||-..+- +.+..+
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 5667743211 111 1 1 33 3334455555444 677787 5579999987321 233444
Q ss_pred eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.-..++.++||-||..|+ .+. |+.|.|||+..
T Consensus 508 ~k~~i~a~~fs~dGslla-~s~------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLA-VSF------DDTITIWDYDT 539 (792)
T ss_pred ccCcccchhhcCCCcEEE-Eec------CCEEEEecCCC
Confidence 333566699999996554 455 99999999965
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.46 E-value=1.2e-09 Score=106.47 Aligned_cols=295 Identities=16% Similarity=0.238 Sum_probs=196.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeee-cCCCc-EEEEe-c-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRF-SSDEA-VACRM-A-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~-S~d~~-~la~~-~-~~~i~v~~ 76 (434)
|.++.|++.+..++..+ .|+.+.+|+...+. .+..+..... ..+..+.+ ++++. +++.. . ++.+.+|+
T Consensus 68 i~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 68 ITSIAFSPDGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred EEEEEECCCCcEEEEec-----CCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 57889999999999877 78999999998886 5666655321 23334555 88887 44443 3 57999999
Q ss_pred CCC-CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 77 TTD-FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 77 ~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
... .........+...|..+.++|++. .++. . . ..++.+++|++.. ...+.....+...+..+.|+|+|..
T Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~--~-~-~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 141 LSTPGKLIRTLEGHSESVTSLAFSPDGK-LLAS--G-S-SLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred ecCCCeEEEEEecCcccEEEEEECCCCC-EEEe--c-C-CCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcce
Confidence 986 443344556667888999999854 2221 1 1 1578999999976 5677777778889999999999983
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeee-ecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--E
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I 231 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~ 231 (434)
+++ +...|.....| +.... .... .+. +.... ...|+|++..++ .+..++.+++||.+... +
T Consensus 213 ~~~--~~~~d~~i~~w---------d~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 213 LIA--SGSSDGTIRLW---------DLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLA--SGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEE--EecCCCcEEEE---------ECCCC-cEEeeecCCCCcce-eEeECCCCCEEE--EecCCCcEEEeeecCCCcEE
Confidence 322 22344444433 11111 1111 122 12222 228999996666 57789999999986322 2
Q ss_pred EE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CC-C-ceEEEECCCCCEEEEE-EcCCcee
Q 013884 232 LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AE-C-SVTSEWSPDGRYFMTA-TTAPRLQ 304 (434)
Q Consensus 232 ~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~-~-~~~~~wspdg~~l~ta-s~~~rl~ 304 (434)
.. .|...+.++.|+|++..+++++.+ +.+.+||..+........ .+ . +..+.|++++..++.+ ..
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 349 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSD---GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD----- 349 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCC---CcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC-----
Confidence 22 357889999999999988886633 579999998876555544 44 3 5558885454677776 45
Q ss_pred eCCcEEEEeecCce-eeeeecc-cceeeEEEcCC
Q 013884 305 IDNGIKIFHHNGSL-FFKKMFD-KLFQAEWKPVS 336 (434)
Q Consensus 305 ~D~~i~iw~~~g~~-~~~~~~~-~~~~~~w~p~~ 336 (434)
|+.+++|++.... ....... .+..+.|.+ .
T Consensus 350 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 381 (466)
T COG2319 350 -DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D 381 (466)
T ss_pred -CCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence 8889999996665 2222222 277888887 5
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=4.7e-12 Score=120.23 Aligned_cols=198 Identities=12% Similarity=0.161 Sum_probs=134.8
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884 61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+.++++.+||.++|.+-... .......|...+.+-.|+|++...+. .|.++.|++|.-.. -.-.+.--+
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt------~GEDG~iKiWSrsG----MLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLT------AGEDGVIKIWSRSG----MLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeee------ecCCceEEEEeccc----hHHHHHhhc
Confidence 45666777888888764331 11223345556777899999755553 48899999999643 111122234
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
...+.+++|.|+.+.++++... .++.-.. ......+.- .|+|-|.++.|+|.++.++ +|.+|-
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~-------------h~~IKpL-~~n~k~i~WkAHDGiiL~~~W~~~s~lI~--sgGED~ 208 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGG-------------HISIKPL-AANSKIIRWRAHDGLVLSLSWSTQSNIIA--SGGEDF 208 (737)
T ss_pred CceeEEEEECCCCCceEEecCC-------------eEEEeec-ccccceeEEeccCcEEEEeecCcccccee--ecCCce
Confidence 5577899999999998876321 1111111 111122221 2588999999999998888 799999
Q ss_pred eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEE
Q 013884 220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.++||..+..++.- |..++++++|+|+ +.++++++. +++ +.......+..++|||||..++.|
T Consensus 209 kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n----t~R---------~~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 209 RFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN----TAR---------FSSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred eEEeecccCcccccCChhccceeeeeeccc-cceeeeeee----eee---------ecCCCccceEEEEEcCCCceeecc
Confidence 999999998887754 7899999999999 777777653 233 222233466679999999999998
Q ss_pred Ec
Q 013884 298 TT 299 (434)
Q Consensus 298 s~ 299 (434)
+.
T Consensus 275 t~ 276 (737)
T KOG1524|consen 275 TS 276 (737)
T ss_pred cc
Confidence 87
No 190
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=6.5e-13 Score=136.31 Aligned_cols=244 Identities=15% Similarity=0.148 Sum_probs=164.4
Q ss_pred ceEEecCCCcE----EEEEecCCCCCCCcEEEEEcCC---CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEE
Q 013884 3 LLLTCLRVGLI----IQTFQKSSTPQEKNVILWKTET---GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQ 73 (434)
Q Consensus 3 ~~l~fSP~g~~----L~t~~~~~~~~d~~v~iWd~~~---g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~ 73 (434)
..|+|++.|.. |+.+. +|++|.+||... +.....+...+.|...|..+.|++... +||++. +++|.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~-----edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGL-----EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred eeeeecccCCCccceeeccc-----cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 45778887776 55544 899999999854 322222222333558888999999765 999985 57999
Q ss_pred EEeCCCCCCceee-ee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc--ceeEEEE
Q 013884 74 FFDTTDFPKGILY-RL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC--STVQLNW 149 (434)
Q Consensus 74 v~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~--~~~~~~w 149 (434)
|||+++.+..... .. ..+.|..++|.-.-...+| +.+..+++.|||+.. .+++...+.+.. ....+.|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA-----S~s~sg~~~iWDlr~---~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA-----SGSPSGRAVIWDLRK---KKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh-----ccCCCCCceeccccC---CCcccccccCCCccceeeeee
Confidence 9999886543222 11 3457888888766333444 445567899999987 666666555443 4557899
Q ss_pred CCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884 150 NRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK- 227 (434)
Q Consensus 150 s~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~- 227 (434)
+|++..-+++++.+. ....+ +|.+.-... ...+--.|+..|.++.|++.+.++++ ++..|+++.+||.+
T Consensus 215 hP~~aTql~~As~dd~~Pviq-------lWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lll-SsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQ-------LWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLL-SSGKDNRIICWNPNT 285 (1049)
T ss_pred CCCCceeeeeecCCCCCceeE-------eecccccCC-chhhhcccccceeeeccCCCCchhhh-cccCCCCeeEecCCC
Confidence 999877665554332 22222 333322111 11111235778999999999877777 56679999999996
Q ss_pred ceeEEEcC--CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC
Q 013884 228 CRPILELG--SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 228 ~~~~~~~~--~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++.+.++. ...+..+.|.|..- .++++. .+|.|.|+.+...
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~as---fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAAS---FDGKISIYSLQGT 329 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhhe---eccceeeeeeecC
Confidence 56666774 46678899999775 777777 4579999998754
No 191
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.1e-11 Score=112.37 Aligned_cols=229 Identities=13% Similarity=0.150 Sum_probs=148.2
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCc-eeee--------------------eecCCeeEEEEeCCCCCeEEEEecCCCCCCc
Q 013884 61 EAVACRM-ATNEIQFFDTTDFPKG-ILYR--------------------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPA 118 (434)
Q Consensus 61 ~~~la~~-~~~~i~v~~~~~~~~~-~~~~--------------------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~ 118 (434)
|+|+|.+ .+-+|.|||+.-.... .... .|.+.|-+++|.-.-.+.+| +++.+.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa-----SgsaD~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA-----SGSADK 266 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE-----ecCCCc
Confidence 5799998 4669999997532210 0011 11112233444333223333 678889
Q ss_pred eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe
Q 013884 119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
+|.+|++.. +++......|...+.++.|+|....+++.. ..|++.. |+.+...+..... ..-.+.|
T Consensus 267 TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~-------l~D~R~~~~s~~~--wk~~g~V 332 (463)
T KOG0270|consen 267 TVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVA-------LKDCRDPSNSGKE--WKFDGEV 332 (463)
T ss_pred eEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec--cccceEE-------eeeccCccccCce--EEeccce
Confidence 999999999 888888888999999999999876655542 2343333 4433321111111 1226889
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC--
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-- 271 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-- 271 (434)
-.++|.|.....+++ +..+|.++-||+| ++++.++ |.++|.+|++++.-. ++++++ .++.|.+|++..-
T Consensus 333 Ekv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCC
Confidence 999999987766664 7789999999997 4677766 899999999999876 455555 5579999997632
Q ss_pred EEE--EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 272 KQL--GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~~i--~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+.+ +.+.-....+++..|+-.++++.+.. -+.++|||+...
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~-----k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGE-----KAVLRVWDIFTN 451 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCc-----cceEEEeecccC
Confidence 222 12222233447778887766555441 556999998543
No 192
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.2e-10 Score=112.79 Aligned_cols=222 Identities=10% Similarity=0.068 Sum_probs=138.4
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE-EEEe-c---CCeEEEEeCCCCCCceeeeee-cCC-eeEEE
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV-ACRM-A---TNEIQFFDTTDFPKGILYRLR-VPG-VAAFE 97 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~-la~~-~---~~~i~v~~~~~~~~~~~~~~~-~~~-v~~~~ 97 (434)
...|.+-|.. |...+.+... .....+.|||||+. ++.. . ...|.++|+..... ..+. .++ .....
T Consensus 168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~ 239 (419)
T PRK04043 168 KSNIVLADYT-LTYQKVIVKG----GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSD 239 (419)
T ss_pred cceEEEECCC-CCceeEEccC----CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeE
Confidence 4567776643 4434444332 12337899999984 5543 2 23788889866432 2222 333 45678
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
|||++ ..+++.... .....|.++++.. + ....++..........|+|||+.|++.... . +...|
T Consensus 240 ~SPDG-~~la~~~~~--~g~~~Iy~~dl~~---g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr----~-----g~~~I 303 (419)
T PRK04043 240 VSKDG-SKLLLTMAP--KGQPDIYLYDTNT---K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDR----L-----GYPNI 303 (419)
T ss_pred ECCCC-CEEEEEEcc--CCCcEEEEEECCC---C-cEEEcccCCCccCccEECCCCCEEEEEECC----C-----CCceE
Confidence 99994 445443322 2245677777755 3 344444444444567899999999886432 1 34578
Q ss_pred EEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-------CeEEEEeccceeEEEcCCc-CeeEEEECCCCC
Q 013884 178 NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILELGSG-PYNTVRWNPKGK 249 (434)
Q Consensus 178 ~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-------~~i~l~d~~~~~~~~~~~~-~~~~i~~sP~g~ 249 (434)
|.+++.++...++... +. ....|||||+.++++....+ ..|.+.|+.+.....+... ......|||||+
T Consensus 304 y~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 304 FMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred EEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence 9999887755455432 22 23599999999998765431 3788889876666666332 334589999999
Q ss_pred eEEEEecCCCCCeEEEEEccCCEE
Q 013884 250 FLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.|+..........+.+.+++....
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCCee
Confidence 988876544345677888865533
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.44 E-value=7.6e-12 Score=118.95 Aligned_cols=90 Identities=20% Similarity=0.418 Sum_probs=74.7
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++.|+.++|||||+++|.+ +.|+.++|||.....+...- =+...|++|||||+||++||-| .-|.||.+..+
T Consensus 290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED---DLVtVwSf~er 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED---DLVTVWSFEER 364 (636)
T ss_pred cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc---ceEEEEEeccc
Confidence 6789999999999999975 56899999998766554331 2567899999999999999955 48999999999
Q ss_pred EEEEEeeCC--CceEEEECC
Q 013884 272 KQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wsp 289 (434)
+.+..-++| +++.++|.|
T Consensus 365 RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEeccccccceeeEeecc
Confidence 999998888 555677774
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=4.7e-11 Score=109.65 Aligned_cols=208 Identities=15% Similarity=0.193 Sum_probs=155.6
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...|...|-++.|+|-++..|| +++.+.+|.||++|... ...++..+.+|...+-.+.|+|....+++.+.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred ccCccccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3455667889999999888888 57788899999999632 25667888899988899999998887766543
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CCcC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~~~ 238 (434)
.|.+. ..+++..+ +..+.+++..-|+++.|+-||.+|+ +...|.+|++||.+...+ .+. |.+.
T Consensus 152 --~Dn~v---------~iWnv~tg-eali~l~hpd~i~S~sfn~dGs~l~--TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 152 --SDNTV---------SIWNVGTG-EALITLDHPDMVYSMSFNRDGSLLC--TTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred --CCceE---------EEEeccCC-ceeeecCCCCeEEEEEeccCCceee--eecccceeEEEcCCCCcEeeecccccCC
Confidence 23333 33333333 6778888899999999999999999 678899999999975444 333 4444
Q ss_pred ee-EEEECCCCCeEEEEecCC-CCCeEEEEEccCCE---EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 239 YN-TVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK---QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 239 ~~-~i~~sP~g~~l~~~~~~~-~~g~i~iwd~~~~~---~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
.+ .+.|--+|. |++.||.. .+.++-+||..+.+ .+..+... ++.---|.||...+..++.. |+.||-|
T Consensus 218 k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYy 291 (472)
T KOG0303|consen 218 KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYF 291 (472)
T ss_pred CcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEE
Confidence 33 467778888 66777754 46789999987653 23334433 55557899999999888876 9999999
Q ss_pred eecCce
Q 013884 313 HHNGSL 318 (434)
Q Consensus 313 ~~~g~~ 318 (434)
.++...
T Consensus 292 Eit~d~ 297 (472)
T KOG0303|consen 292 EITNEP 297 (472)
T ss_pred EecCCC
Confidence 998765
No 195
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.42 E-value=1.8e-11 Score=118.64 Aligned_cols=286 Identities=14% Similarity=0.135 Sum_probs=166.4
Q ss_pred EEecCC--Cc-EEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013884 5 LTCLRV--GL-IIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT 77 (434)
Q Consensus 5 l~fSP~--g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~ 77 (434)
..|++. -+ .|+.+. +|+.|.++|......- ++|..-..|...+..+.|-|.+..|++. +|.++++||+
T Consensus 55 ~sFs~~~n~eHiLavad-----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVAD-----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccccCCCCccceEEEec-----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 456653 23 344444 7899999998643211 1222222244666688999977778877 4569999999
Q ss_pred CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--------------------CCCcee
Q 013884 78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--------------------QSQPLA 135 (434)
Q Consensus 78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--------------------~~~~i~ 135 (434)
........ ...|...|.+++|+|.+...++ +++.++.+.||++.... +.++..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~-----tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC-----TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCccee-----eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 87543222 4456667999999998433333 57888999999986421 001111
Q ss_pred eee----ecccce---eEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCCceeeeecC--CCCCeEEEEEC
Q 013884 136 RRS----FFRCST---VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLR--KEGPVHDVQWS 204 (434)
Q Consensus 136 ~~~----~~~~~~---~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~--~~~~i~~~~ws 204 (434)
.+. .....+ +.+.+..|...|+. ....|..++.|+-..+ .|..+-.+. ..++.. +.-.+.++...
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS--aga~D~~iKVWDLRk~~~~~r~ep~~~--~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLAS--AGAADSTIKVWDLRKNYTAYRQEPRGS--DKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeee--ccCCCcceEEEeecccccccccCCCcc--cCccCcccceeeeEEEEec
Confidence 100 000111 22334444444322 2335777776542211 000000000 001111 12345566666
Q ss_pred cCCCEEEEEEccCCCeEEEEeccc---eeEEEcCCcC----eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013884 205 YSGSEFAVVYGFMPASATIFNKKC---RPILELGSGP----YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT 276 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~~---~~~~~~~~~~----~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~ 276 (434)
..|.++.+ ..+|+.|++||+.. .++..+.... .+.-..||||.+|++|+ .+...++|.+++.+. ...
T Consensus 281 ssGt~L~A--sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS---sd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 281 SSGTYLFA--SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS---SDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred CCCCeEEE--EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC---CCcceeeeeecCccCChhh
Confidence 67788774 56699999999863 3333332222 23445799999999998 566999999987643 333
Q ss_pred eeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeec
Q 013884 277 TRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+.+| .++.++|.|.- .-++|++. |..++||++.
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcSd------D~~~kiW~l~ 391 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCSD------DFRVKIWRLS 391 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeecc------CcceEEEecc
Confidence 4444 55669997753 34666677 9999999983
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.41 E-value=7.6e-11 Score=104.33 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=169.7
Q ss_pred CCcEEEEEeecCcCCCCCCeeeec--CCCc-EEEEec-----CCeEEEEeCCCCCCceeeee--ecC-CeeEEEEeCCCC
Q 013884 35 TGEAVYQLFQKNMTKTTWPSIRFS--SDEA-VACRMA-----TNEIQFFDTTDFPKGILYRL--RVP-GVAAFEVSKAPG 103 (434)
Q Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~S--~d~~-~la~~~-----~~~i~v~~~~~~~~~~~~~~--~~~-~v~~~~~sp~~~ 103 (434)
.++.++.|...- ... ++.|| +|.+ +||.++ .|.|+|-.+.........+- ..+ .++.+-|.|+..
T Consensus 34 r~~eiy~Y~ap~---~ly-a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~ 109 (364)
T KOG0290|consen 34 RRKEIYTYNAPW---PLY-AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSK 109 (364)
T ss_pred ccceEEEecCCC---cee-eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcc
Confidence 345566665432 222 66787 3333 455442 36888877654332222221 122 366778888742
Q ss_pred C----eEEEEecCCCCCCceEEEEEcCCCC-CCCceee-----eeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884 104 S----HVAVFVPESKGSPASVQIYACGKDL-QSQPLAR-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 104 ~----~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g 173 (434)
. .+| .....+|||.+.... ...+.+. .+-|.+..+++.||.-...++...+-| .
T Consensus 110 g~~pdlLA-------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD---------T 173 (364)
T KOG0290|consen 110 GVYPDLLA-------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID---------T 173 (364)
T ss_pred ccCcchhh-------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc---------C
Confidence 1 122 223478999987421 1111111 234567788999998777766554332 2
Q ss_pred ceeEEEEeeC-CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----EEEc--CCcCeeEEEECC
Q 013884 174 ESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILEL--GSGPYNTVRWNP 246 (434)
Q Consensus 174 ~~~l~~l~~~-~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~----~~~~--~~~~~~~i~~sP 246 (434)
.-++|.++.. ..+....-+.|+.+|++++|...|..++. +.+.||.+++||++... +.+- ...+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA-SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA-SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE-EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 2245666543 22233444567889999999997765444 44558999999997433 2222 245667789998
Q ss_pred CC-CeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCcee--
Q 013884 247 KG-KFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLF-- 319 (434)
Q Consensus 247 ~g-~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~~~-- 319 (434)
+. +++|+-..+. ..|.|.|++.- ..+..++.| .+..++|.|.. .+|+||+. |..+-|||++....
T Consensus 253 qDpnymATf~~dS--~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 253 QDPNYMATFAMDS--NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPREN 324 (364)
T ss_pred CCchHHhhhhcCC--ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccC
Confidence 66 5777655443 58999998754 567777777 45559999975 58889998 99999999954322
Q ss_pred ------eeeecccceeeEEEcCCCC
Q 013884 320 ------FKKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 320 ------~~~~~~~~~~~~w~p~~~~ 338 (434)
.-.--.|+.++.|+|..+.
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCchhhhhccceeeeeeecccCCC
Confidence 1113368999999987544
No 197
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=1.2e-11 Score=120.03 Aligned_cols=243 Identities=13% Similarity=0.141 Sum_probs=163.8
Q ss_pred eeeec-CCCcEEEEec-CCeEEEEeCCCCCCc------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 54 SIRFS-SDEAVACRMA-TNEIQFFDTTDFPKG------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 54 ~~~~S-~d~~~la~~~-~~~i~v~~~~~~~~~------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
.++.+ |.++||.+++ |+.|++|+....... .....|.+-|.++.+.-.+...|.+ ..+-+|++|+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~------SsDtTVK~W~~ 102 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA------SSDTTVKVWNA 102 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe------cCCceEEEeec
Confidence 45555 4677788875 689999998653321 1123344556666666554444543 44568999998
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE-EEe-eCCCceeeeecCCCCCeEEEEE
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLT-TDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~-~~~~~~~~v~l~~~~~i~~~~w 203 (434)
.... .-.+.++.-|+..+.+++.-...+.+ .++...|+.+..|.-....- .+. .+....+........+|++++-
T Consensus 103 ~~~~-~~c~stir~H~DYVkcla~~ak~~~l--vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 103 HKDN-TFCMSTIRTHKDYVKCLAYIAKNNEL--VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred ccCc-chhHhhhhcccchheeeeecccCcee--EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 7632 24555666677778888774334444 34455666655442211100 000 0001111111234678999999
Q ss_pred CcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
.++|. .+++|+..+.+++||.+ +..+..+ |+..|..+..++||+.+++++ .+|+|++||+...+++.++..|
T Consensus 180 N~t~t--~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 180 NQTGT--IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred CCcce--EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEec
Confidence 99994 44478888999999986 4444444 889999999999999999999 6789999999999999998877
Q ss_pred --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 --~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+..+.-+|+=.++.+|+. |+.|..=++..
T Consensus 255 ~e~VWaL~~~~sf~~vYsG~r------d~~i~~Tdl~n 286 (735)
T KOG0308|consen 255 KEGVWALQSSPSFTHVYSGGR------DGNIYRTDLRN 286 (735)
T ss_pred cCceEEEeeCCCcceEEecCC------CCcEEecccCC
Confidence 5666888899999999999 99998887744
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.40 E-value=2.8e-11 Score=115.02 Aligned_cols=174 Identities=15% Similarity=0.169 Sum_probs=126.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.|-.|||||.=|+|.+ +|+.|+||. .+|-.-.++.+.. ..+.|++|.|+++-++++..+.+.|=-+.-..
T Consensus 107 ~~~gRW~~dGtgLlt~G-----EDG~iKiWS-rsGMLRStl~Q~~---~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAG-----EDGVIKIWS-RSGMLRSTVVQNE---ESIRCARWAPNSNSIVFCQGGHISIKPLAANS 177 (737)
T ss_pred hhhcccCCCCceeeeec-----CCceEEEEe-ccchHHHHHhhcC---ceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence 56778999999999998 999999998 6675433333322 67779999999999988888888776665544
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
+....+.|..-|-++.|+|. ...|+ ++|.+-..++||-- ++.+.+-..+...+++++|+|+-.++ +.+
T Consensus 178 k~i~WkAHDGiiL~~~W~~~-s~lI~-----sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd~~~~--v~S 245 (737)
T KOG1524|consen 178 KIIRWRAHDGLVLSLSWSTQ-SNIIA-----SGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPEKDYL--LWS 245 (737)
T ss_pred ceeEEeccCcEEEEeecCcc-cccee-----ecCCceeEEeeccc----CcccccCChhccceeeeeecccccee--eee
Confidence 44455666666889999998 45554 57888899999964 57777778888899999999993332 221
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
| +.+. +.-...|.|..++|||||.+++. |...|.+
T Consensus 246 ---------~------nt~R--------~~~p~~GSifnlsWS~DGTQ~a~--gt~~G~v 280 (737)
T KOG1524|consen 246 ---------Y------NTAR--------FSSPRVGSIFNLSWSADGTQATC--GTSTGQL 280 (737)
T ss_pred ---------e------eeee--------ecCCCccceEEEEEcCCCceeec--cccCceE
Confidence 1 1111 11122689999999999999995 4444544
No 199
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.7e-12 Score=127.24 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=159.2
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~ 82 (434)
++..=..++.+++++ +|..+-+|.+..-..+.+|.++. ..+.++.|++++.+|+.+. +++|+|||+.....
T Consensus 33 ~lk~~~s~r~~~~Gg-----~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGG-----EDEKVNLWAIGKPNAITSLTGHE---SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred eeeeeccceeeccCC-----CceeeccccccCCchhheeeccC---CcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 333333456677666 77888899887666677776654 7888999999999999885 57999999986543
Q ss_pred ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884 83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
......+...+.++.|+|-+ .|. .++..+..+.+|++.. ..++..+..|...+-.+.++|+|.++...
T Consensus 105 vrtLtgh~~~~~sv~f~P~~-----~~~-a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g--- 172 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYG-----EFF-ASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLRLSPDGRWVASG--- 172 (825)
T ss_pred hhhhhccccCcceeeeccce-----EEe-ccccccccceehhhhc---cCceeeecCCcceeEEEeecCCCceeecc---
Confidence 34455667788889999973 222 3456677899999976 66777777777777889999999986443
Q ss_pred cccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc--CCcC
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGP 238 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~--~~~~ 238 (434)
..|.+.+.|..... ...-.+. +++.++.+.|+|..-.++ .|+.|+.+.+||++.-. +.+. ....
T Consensus 173 ~ed~tvki~d~~ag----------k~~~ef~~~e~~v~sle~hp~e~Lla--~Gs~d~tv~f~dletfe~I~s~~~~~~~ 240 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAG----------KLSKEFKSHEGKVQSLEFHPLEVLLA--PGSSDRTVRFWDLETFEVISSGKPETDG 240 (825)
T ss_pred CCcceeeeeccccc----------ccccccccccccccccccCchhhhhc--cCCCCceeeeeccceeEEeeccCCccCC
Confidence 23566665443221 1111122 478999999999764444 89999999999998544 4333 3577
Q ss_pred eeEEEECCCCCeEEEEecC
Q 013884 239 YNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~ 257 (434)
+.+..|+|+|+.+++|-..
T Consensus 241 v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 241 VRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeecCCceeeecCchh
Confidence 8999999999998877533
No 200
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=2.8e-09 Score=100.33 Aligned_cols=145 Identities=16% Similarity=0.255 Sum_probs=108.4
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 189 ~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i 265 (434)
.+++.+.+.|.=..+.-+++.+++ |..|+ .+-+||.++..+..+ .-+.+..+..+|+|++++++. .++.|.+
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---dr~el~v 427 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---DRFELWV 427 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc---CceEEEE
Confidence 455667788888888888876664 66677 999999998776666 457889999999999999886 5679999
Q ss_pred EEccCCE--EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeeccc--ceeeEEEcCCCCCC
Q 013884 266 WDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDK--LFQAEWKPVSPDKF 340 (434)
Q Consensus 266 wd~~~~~--~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~--~~~~~w~p~~~~~~ 340 (434)
.|++++. .+-..+..-++.+.|||++++||-+-- .--+-..|+|+|+.|..++....+. =+.-+|.|++..|+
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 9999884 444444446677999999999998754 2223568999999998777765442 34455677766654
No 201
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.39 E-value=2.2e-09 Score=104.62 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=181.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEE-ecCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACR-MATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~-~~~~~i~v~~~~~ 79 (434)
|.++.|+|++.++++... .|+.+++|++.++..+..+..+. ..+.++.|+|++. +++. ..++.|++|+...
T Consensus 158 v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 158 VTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred EEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 568999999998887651 38999999999888877776633 6677999999998 5665 3578999998774
Q ss_pred CCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 80 FPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 80 ~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
..... ....+.... ...|+|++ ..++ ..+.++.+++|++.... ..+.....+...+..+.|+|++..++.
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 231 GKLLRSTLSGHSDSV-VSSFSPDG-SLLA-----SGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CcEEeeecCCCCcce-eEeECCCC-CEEE-----EecCCCcEEEeeecCCC--cEEEEEecCCccEEEEEECCCCCEEEE
Confidence 33222 122222332 22788885 3333 34566789999998632 223333445667788899998887655
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEcC
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELG 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~~ 235 (434)
... |..... + +.......... ..+...+..+.|.+++..+++ .+..++.+.+|+..... .....
T Consensus 302 -~~~--d~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~ 368 (466)
T COG2319 302 -GSS--DGTVRL-------W--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS-GGSDDGTIRLWDLRTGKPLKTLE 368 (466)
T ss_pred -eeC--CCcEEE-------E--EcCCCceEEEeeecccCCceEEEEECCCCCEEEE-eecCCCcEEeeecCCCceeEEec
Confidence 322 222222 2 11111111111 233457899999433245554 33456788889886544 22222
Q ss_pred Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 236 SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 236 ~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
.. .+..+.+++ . ....+ ....++.+.+|+............. .+..+.+++++.+++.++. ++.+++|
T Consensus 369 ~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 439 (466)
T COG2319 369 GHSNVLSVSFSP-D-GRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS------DNTIRLW 439 (466)
T ss_pred CCceEEEEEECC-C-CCEEE-EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC------CCcEEEE
Confidence 22 278999999 6 44443 1115579999999988777766664 5566999999999999888 9999999
Q ss_pred eecC
Q 013884 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
+...
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9877
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.3e-10 Score=104.16 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=156.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEecCCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~ 81 (434)
+.++|.+.=.-++... .|..|+|||-++ ++...+... .+..+.+++|-|.+ +-|+.+...-|.||......
T Consensus 102 r~~aWhqH~~~fava~-----nddvVriy~kss-t~pt~Lks~--sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVAT-----NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred eeEeechhhhhhhhhc-----cCcEEEEeccCC-CCCceecch--hhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 3455555333333333 789999999766 555555544 34888899999955 67777778899999975321
Q ss_pred Cc-ee---------eeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884 82 KG-IL---------YRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 82 ~~-~~---------~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
.. .. .-+.. --|+++.|.+| +..++...+ .++.|.||+... ++.+..+.+.......++
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdt---g~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASF----GSSSIMIWDPDT---GQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCC-CCEEeeccc----CcceEEEEcCCC---CCcccccccCCCceeeEE
Confidence 10 10 01111 24889999998 444443222 346899999988 555544445556777899
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--
Q 013884 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-- 226 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-- 226 (434)
|||||.+++..+ .|..-. ||...-.-..+.- .+. .+.|...+|+|+|+.+.+..... -++|.+
T Consensus 246 wSPdgd~lfaAt---~davfr-------lw~e~q~wt~erw-~lg-sgrvqtacWspcGsfLLf~~sgs---p~lysl~f 310 (445)
T KOG2139|consen 246 WSPDGDVLFAAT---CDAVFR-------LWQENQSWTKERW-ILG-SGRVQTACWSPCGSFLLFACSGS---PRLYSLTF 310 (445)
T ss_pred EcCCCCEEEEec---ccceee-------eehhcccceecce-ecc-CCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence 999999876543 333322 2211000011111 122 56999999999999887754332 233322
Q ss_pred --cc------------eeEEEc-----------CCcCeeEEEECCCCCeEEEEecCCC-----CCeEEEEEccCC---EE
Q 013884 227 --KC------------RPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNL-----PGDMAFWDYVDG---KQ 273 (434)
Q Consensus 227 --~~------------~~~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~~-----~g~i~iwd~~~~---~~ 273 (434)
+. ..+.++ -.+...+++|.|.|.+|++.-.+.. .+.|.+||...- +.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 10 011111 1456788999999999998644331 356777887654 22
Q ss_pred E--EEeeCCCceEEEECC---CCCEEEEEEc
Q 013884 274 L--GTTRAECSVTSEWSP---DGRYFMTATT 299 (434)
Q Consensus 274 i--~~~~~~~~~~~~wsp---dg~~l~tas~ 299 (434)
+ ....+.....+.|+| +|++|..+=+
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEec
Confidence 2 223333444566665 4555555554
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.39 E-value=3.2e-11 Score=105.34 Aligned_cols=272 Identities=15% Similarity=0.170 Sum_probs=166.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|+++.|-.+++ |.+.. .-+.|++|++.+...+..+.... ...+..++--|+++++.-+-|..+.+|++....
T Consensus 17 v~s~~fqa~~r-L~sg~-----~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 17 VTSVLFQANER-LMSGL-----SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred heehhhccchh-hhccc-----ccceEEEEEeecCccchhhhhhc--cceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence 56666766666 44443 66899999999887776665332 245556777788776666677899999987633
Q ss_pred CceeeeeecC--CeeEEEEeCCCCCe--EEEEecCC---------CCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884 82 KGILYRLRVP--GVAAFEVSKAPGSH--VAVFVPES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 82 ~~~~~~~~~~--~v~~~~~sp~~~~~--ia~~~~~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
-.....+... +.-.++++++..+. +.. .|.. .+.+-.+++-+-+.. .. .....+..
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~-yp~rgsde~h~~D~g~~tqv~i~dd~~~---~K-------lgsvmc~~ 157 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLE-YPSRGSDETHKQDGGDTTQVQIADDSER---SK-------LGSVMCQD 157 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhhee-cCCcccchhhhhccCccceeEccCchhc---cc-------cCceeeee
Confidence 2222222222 22234555553332 222 2221 122223333322211 00 11223344
Q ss_pred EC-CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-----------CCCCCeEEEEECcCCCEEEEEEcc
Q 013884 149 WN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-----------RKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 149 ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-----------~~~~~i~~~~wspdg~~~av~~g~ 216 (434)
|. .++++++.++..+. |+..+|.++.. +..+.+ .++++|.++.+.+.-..=+ .|.
T Consensus 158 ~~~~c~s~~lllaGyEs--------ghvv~wd~S~~---~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi--sgg 224 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYES--------GHVVIWDLSTG---DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI--SGG 224 (323)
T ss_pred ccccccceEEEEEeccC--------CeEEEEEccCC---ceeeccccccccccchhhccCcceeeeechhhcCCc--CCC
Confidence 43 35667666654322 33344554332 222222 2478999999886433323 355
Q ss_pred CCCeEEEEeccce-------eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884 217 MPASATIFNKKCR-------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 217 ~~~~i~l~d~~~~-------~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
-+.++..|++.-. ....+.+-.++.+.+-||++.+|++| -||.|+||+.+++..+..+.-| .+..++|
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrtl~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence 5558888876421 12334566788899999999999999 5569999999999887777665 6667999
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+||...+|.|+. |..|-+|++
T Consensus 302 spd~~lmAaask------D~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASK------DARISLWKL 322 (323)
T ss_pred CCCCchhhhccC------CceEEeeec
Confidence 999999999999 999999985
No 204
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.38 E-value=1.4e-10 Score=113.52 Aligned_cols=249 Identities=9% Similarity=0.106 Sum_probs=168.1
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee--ecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL--RVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~--~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+..+...++...+..+-+++++||+-...+-.....+ +..-|.. +++.+..+..+. .++.+..+.+|.+.
T Consensus 15 ~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~-----~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 15 SDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV-----VGGMDTTIIVFKLS 89 (745)
T ss_pred cchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE-----eecccceEEEEecC
Confidence 556667766665444444578999999765432111111 1111221 333322122222 25677889999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. ..++..+..|+..+|++.-..++. +.++..|.+.+.|--..-.+. ...|...|.+++.-|.
T Consensus 90 ~---~~P~~~LkgH~snVC~ls~~~~~~----~iSgSWD~TakvW~~~~l~~~-----------l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 90 Q---AEPLYTLKGHKSNVCSLSIGEDGT----LISGSWDSTAKVWRIGELVYS-----------LQGHTASVWAVASLPE 151 (745)
T ss_pred C---CCchhhhhccccceeeeecCCcCc----eEecccccceEEecchhhhcc-----------cCCcchheeeeeecCC
Confidence 8 889999999999999999888887 234446777765532211111 2235789999999998
Q ss_pred CCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--e
Q 013884 207 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS--V 283 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~--~ 283 (434)
+ .|+ +|+.|..|++|.-. ...++..|+.-|..+++-|++.+|- ++ .+|.|++||+ +++++....+|.. .
T Consensus 152 ~-~~v--TgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS-cs---NDg~Ir~w~~-~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 152 N-TYV--TGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS-CS---NDGSIRLWDL-DGEVLLEMHGHTNFVY 223 (745)
T ss_pred C-cEE--eccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe-ec---CCceEEEEec-cCceeeeeeccceEEE
Confidence 7 444 79999999999763 3334445888999999999887764 55 6789999999 7788888877733 3
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCC
Q 013884 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVS 336 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~ 336 (434)
++.-.+++..|++++. |++++||+.. .+...... ..+|.+..-+.+
T Consensus 224 sis~~~~~~~Ivs~gE------DrtlriW~~~-e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGE------DRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred EEEecCCCCeEEEecC------CceEEEeecC-ceEEEEecCccceEEEEEeeCC
Confidence 3777788999999999 9999999976 55444433 367777665543
No 205
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.38 E-value=5.8e-11 Score=104.98 Aligned_cols=249 Identities=12% Similarity=0.212 Sum_probs=158.5
Q ss_pred CCeEEEEeCCCCCCce---eeeeecCCeeEEEEeCCCCCeEEEEecCCCCC--CceEEEEEcCCCCCC------Cceeee
Q 013884 69 TNEIQFFDTTDFPKGI---LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS--PASVQIYACGKDLQS------QPLARR 137 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~--~~~v~i~~~~~~~~~------~~i~~~ 137 (434)
+|+|++.+........ ....+...|..++-+|-...+++......++. .-..-||.+|..-.. ..++.+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4788888876543211 12223456888888998666666554433332 235679999863211 111122
Q ss_pred e-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce--eeeecC----CCCCeEEEEECc--CCC
Q 013884 138 S-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLR----KEGPVHDVQWSY--SGS 208 (434)
Q Consensus 138 ~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~----~~~~i~~~~wsp--dg~ 208 (434)
. ..-..+.++.|.|++..++.++ |.. |.+++...... ..+... ......+-+||| ||+
T Consensus 119 dteavg~i~cvew~Pns~klasm~----dn~---------i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD----DNN---------IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec----cCc---------eEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 1 2223567899999999988774 222 33333322211 111111 133456788999 899
Q ss_pred EEEEEEccCCCeEEEEeccce----eEEEcCCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCC-EEEEEeeCC--
Q 013884 209 EFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-- 280 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~~~----~~~~~~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-- 280 (434)
+++.. .++++..||+++. .+...|...+..+.|+|+-+++ +++| .+|.|+|||++.- ..+..+.+|
T Consensus 186 qv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 186 QVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred eEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCccccccCCCce
Confidence 99952 3679999999743 2334467778999999998854 4555 5689999998754 556666654
Q ss_pred CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc-------------------------e-------eeeeecccc
Q 013884 281 CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS-------------------------L-------FFKKMFDKL 327 (434)
Q Consensus 281 ~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~-------------------------~-------~~~~~~~~~ 327 (434)
.+..+.|.|-- +.|+++++ |..|.+|-...- + -+..+-+.+
T Consensus 260 WvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred EEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 77889999964 56677777 999999965110 0 122244579
Q ss_pred eeeEEEcCCCCCCCC
Q 013884 328 FQAEWKPVSPDKFGD 342 (434)
Q Consensus 328 ~~~~w~p~~~~~~~~ 342 (434)
|.++|+...|.+|..
T Consensus 334 Y~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 334 YALAWSSADPWIFAS 348 (370)
T ss_pred EEEeeccCCCeeEEE
Confidence 999999999999986
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.38 E-value=5.3e-11 Score=109.70 Aligned_cols=253 Identities=13% Similarity=0.137 Sum_probs=136.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--------C-----Cc---EEEEEeecCcCCCCCCeeeecCCCcEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--------T-----GE---AVYQLFQKNMTKTTWPSIRFSSDEAVAC 65 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--------~-----g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la 65 (434)
|+++.|||+|..|++++ .++.|.+|... + .+ ....+.. |...+-.++|++|+.+++
T Consensus 68 VN~vRf~p~gelLASg~-----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGG-----DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---HRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred eEEEEEcCCcCeeeecC-----CCceEEEEEecCcCCccccchhhhCccceEEEEEecc---cccchhhhhccCCCceee
Confidence 78999999999999988 78999999765 2 10 0112222 224444899999999999
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC------CCce---EE--EEEcCCCCCCCc
Q 013884 66 RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG------SPAS---VQ--IYACGKDLQSQP 133 (434)
Q Consensus 66 ~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~------~~~~---v~--i~~~~~~~~~~~ 133 (434)
++ .++.+++||+..+.......-|..-+..++|.|- +.+++.-..+... .... +. +.....+.++..
T Consensus 140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred eeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 98 6899999999886654444444556788888886 3333322111100 0000 00 000000000111
Q ss_pred eeeeeecccc----eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECc---
Q 013884 134 LARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSY--- 205 (434)
Q Consensus 134 i~~~~~~~~~----~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wsp--- 205 (434)
...+-||... -..++|+|+|..|+.-+.. .+..+... .+.-|..+-.........+.. ..++..+.++|
T Consensus 219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~-~~~g~~~~--~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL-FKVGGGVF--RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred ceeeeeecCchhhhhhhcccCCCCcEEEcccce-eeeCCcee--eceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 1111111111 1256899999976542211 11111110 001122211000001111111 23444455443
Q ss_pred ---------------CCCEEEEEEccCCCeEEEEeccc-eeEE---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 206 ---------------SGSEFAVVYGFMPASATIFNKKC-RPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 206 ---------------dg~~~av~~g~~~~~i~l~d~~~-~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
-+-.||+.+ -..+.+||.++ .++. .+|-..++.++||+||.+|++.+ .||...+.
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS---~DGyCS~v 369 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS---TDGFCSLV 369 (434)
T ss_pred EeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec---cCCceEEE
Confidence 233455433 23799999874 3433 45788999999999999999998 56677666
Q ss_pred EccCCE
Q 013884 267 DYVDGK 272 (434)
Q Consensus 267 d~~~~~ 272 (434)
-.+..+
T Consensus 370 tfe~~e 375 (434)
T KOG1009|consen 370 TFEPWE 375 (434)
T ss_pred EEcchh
Confidence 555443
No 207
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.2e-10 Score=104.14 Aligned_cols=191 Identities=12% Similarity=0.198 Sum_probs=127.6
Q ss_pred CcceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884 1 MLLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
.|+++.|+|+-. .|++++ +|+.|.||++..-+++.++..+. ..|+.+...|.|++.++.+ |..++.||+
T Consensus 85 sitaL~F~~~~S~shLlS~s-----dDG~i~iw~~~~W~~~~slK~H~---~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGS-----DDGHIIIWRVGSWELLKSLKAHK---GQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred ceEEEEecCCcchhheeeec-----CCCcEEEEEcCCeEEeeeecccc---cccceeEecCCCceEEEEcCCceeeeehh
Confidence 478999999886 899888 89999999999989999987765 4588999999999988874 569999998
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-.+....+..+... .. .+.|+|.|.+.+
T Consensus 157 V~Gr~a~v~~L~~~-at---------------------------------------------------~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNK-AT---------------------------------------------------LVSWSPQGDHFV 184 (362)
T ss_pred hcCccceeeccCCc-ce---------------------------------------------------eeEEcCCCCEEE
Confidence 66443222222111 11 245555555444
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-- 234 (434)
++..... .+|.++...- ...+..+..+.++.|- ++..++ .|..++.+.+||.. ..+.+.|
T Consensus 185 v~~~~~i-----------~i~q~d~A~v---~~~i~~~~r~l~~~~l-~~~~L~--vG~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 185 VSGRNKI-----------DIYQLDNASV---FREIENPKRILCATFL-DGSELL--VGGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EEeccEE-----------EEEecccHhH---hhhhhccccceeeeec-CCceEE--EecCCceEEEeccCCCccceeeec
Confidence 4321100 1222221110 0011112346666665 345555 37778999999986 4444444
Q ss_pred CCcCeeEEE--ECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 235 GSGPYNTVR--WNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 235 ~~~~~~~i~--~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
|...|..+. -.|++.+|++++ .+|.|++||++..
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaS---SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTAS---SDGFIKVWDIDME 283 (362)
T ss_pred chhheeeeEEEecCCceEEEEec---cCceEEEEEcccc
Confidence 788888877 378899999999 6789999998754
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=4.8e-12 Score=125.77 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=181.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|+|+.|...|.|++|.+ .|.-|+||.++++.++.++.+++ ..++.++-+.+..++|.++.+ .|++|.+.+.
T Consensus 193 Vyca~fDrtg~~Iitgs-----dd~lvKiwS~et~~~lAs~rGhs---~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGS-----DDRLVKIWSMETARCLASCRGHS---GDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred eeeeeeccccceEeecC-----ccceeeeeeccchhhhccCCCCc---cccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 78999999999999998 88999999999999999988865 566678888888888888654 8999999998
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~ 159 (434)
....+...|...|++++|||-. +.+.++++++|+..-....-+-.-..+. +.-++.+.+-..|...+.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T- 333 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT- 333 (1113)
T ss_pred chHHHHhccccceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc-
Confidence 7777788888899999999962 4577889999998521000000000000 001111111111111110
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~ 236 (434)
+ +-.++...|.+...-.+ ...+.-+..+.|...+.+ +...+..+.+|++- +...+.+ |.
T Consensus 334 --------g-s~d~ea~n~e~~~l~~~--------~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 334 --------G-SRDGEARNHEFEQLAWR--------SNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred --------c-cCCcccccchhhHhhhh--------ccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhcccc
Confidence 0 01122222222111110 111112222223333333 23334466778774 3333333 56
Q ss_pred cCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEe--eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 237 GPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~--~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
..+..+.++|....++. +| .+|...|||+-.+-.+... .+...++..||+||..++..-. -|.+.|..
T Consensus 396 d~~yvLd~Hpfn~ri~msag---~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~------hgql~i~g 466 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAG---YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD------HGQLYILG 466 (1113)
T ss_pred cceeeeeecCCCcHhhhhcc---CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC------CCceEEec
Confidence 77888999997765554 55 5689999999877444333 2335667999999999998776 78899988
Q ss_pred e-cCceeeeeecccceeeEEEcCCCCCC
Q 013884 314 H-NGSLFFKKMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 314 ~-~g~~~~~~~~~~~~~~~w~p~~~~~~ 340 (434)
. .|+.......+.++--.++|.-+...
T Consensus 467 ~gqs~s~k~ak~dqffl~dyrplirdTn 494 (1113)
T KOG0644|consen 467 TGQSKSQKKAKYDQFFLGDYRPLIRDTN 494 (1113)
T ss_pred cCCCccccccccceEeecCccccccccc
Confidence 7 34444444556666666776544433
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3e-10 Score=104.24 Aligned_cols=278 Identities=10% Similarity=0.084 Sum_probs=169.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|.+|.||.+|++|++++ .|..++||++... +.+.-...+ |...+-|+.|.....++.++. +++|..
T Consensus 59 iNAlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~--H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHP--HRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred cceeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceeccCc--cccceEEEEEccCCeeEecCCCcceeEe
Confidence 78999999999999988 8899999998532 333332222 446666999998888888885 469999
Q ss_pred EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECC
Q 013884 75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
.|+...+...+.... -..|..+..+|. ++++++.. ..+.|.+|+..... ...++ ...........+.|+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t-----~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVT-----RAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHP 204 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCC-CceEEEEe-----cCceEEEEeccCCCCCCcee-eecCCCccceeeeecC
Confidence 998875433322211 225888889998 66665543 34688999986521 11222 2222334456778999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCC----ceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~ 226 (434)
.--.|+..++.. +..+||.+..... ......|.. ...-..+.|+|+|++|..+....+ -.+||+
T Consensus 205 ~~P~Li~~~~~~---------~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~--P~~~D~ 273 (609)
T KOG4227|consen 205 ETPALILVNSET---------GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC--PLYFDF 273 (609)
T ss_pred CCceeEEecccc---------CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC--CEEeee
Confidence 888776654321 2223444322110 001111221 223357899999999986543332 334555
Q ss_pred cc--eeEEEcC--------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-----C------------------EE
Q 013884 227 KC--RPILELG--------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-----G------------------KQ 273 (434)
Q Consensus 227 ~~--~~~~~~~--------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-----~------------------~~ 273 (434)
-. -.++++. ...+.+++|--|-. +++|+ .+-.|++|-+-. | +.
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGS---DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccC---cccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 32 2233332 12345577766544 66665 335899997541 1 12
Q ss_pred EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 274 i~~~~~~~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+..+.+|.. ..+.|+|....|++.+- .+.|+||.-
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGV------E~~~KlWS~ 386 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGV------ENSFKLWSD 386 (609)
T ss_pred eEEEecccccccceeecCCcceEeccch------hhheecccc
Confidence 334566633 34999999888888877 999999963
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.36 E-value=3.7e-11 Score=116.21 Aligned_cols=235 Identities=15% Similarity=0.225 Sum_probs=157.6
Q ss_pred ecCCCcEEEEe---cCCeEEEEeCCCCCCcee---ee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884 57 FSSDEAVACRM---ATNEIQFFDTTDFPKGIL---YR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 57 ~S~d~~~la~~---~~~~i~v~~~~~~~~~~~---~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
|..+.+++|.- ..+.|-||++........ -. .....|+++.|.|-.+..+|+ .+.++.|+||.++...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV-----a~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV-----ATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee-----cccCceEEEEEeccCC
Confidence 44455555542 457999999987543221 11 223468999999987777876 3567899999997643
Q ss_pred ----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884 130 ----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 130 ----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp 205 (434)
...+...++.|...++.+.|+|-...++..++ .|.+++ ||.+..... ..--..|.+.|.+++|||
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~-------lWDl~~~~~--~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIE-------LWDLANAKL--YSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceee-------eeehhhhhh--hheeccCcCceeEEEECC
Confidence 24566778889999999999997766655432 333433 554433222 122234678999999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccce--eEEEcCCcCe----eEEEECCCCCeEEEEecCC-CCCeEEEEEccCCE--EEEE
Q 013884 206 SGSEFAVVYGFMPASATIFNKKCR--PILELGSGPY----NTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK--QLGT 276 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~~--~~~~~~~~~~----~~i~~sP~g~~l~~~~~~~-~~g~i~iwd~~~~~--~i~~ 276 (434)
||+++|. -..|+++++|+-+.. ++.+ +.+++ -.|.|.-||+++++.||+. ...+|.+||.++.. .+.+
T Consensus 731 dGr~~At--VcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t 807 (1012)
T KOG1445|consen 731 DGRRIAT--VCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT 807 (1012)
T ss_pred CCcceee--eecCceEEEeCCCCCCCcccc-CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence 9999995 457899999988643 3333 23333 3589999999999999986 35689999977542 2222
Q ss_pred e---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 277 T---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 ~---~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
. .++.+..-.+.+|...|+..+.. |..|.+|.+.
T Consensus 808 ~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~ 844 (1012)
T KOG1445|consen 808 QVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVI 844 (1012)
T ss_pred eeecccCccccccccCCCceEEEecCC-----CceEEEEEec
Confidence 1 12234445678887765554443 8999999873
No 211
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1.7e-08 Score=95.79 Aligned_cols=258 Identities=12% Similarity=0.054 Sum_probs=151.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeecC---
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRVP--- 91 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~~--- 91 (434)
++|.|.|..+++.+.++.... .+....|||++.|+.+. ++.|.|||..+... ...+..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCc
Confidence 789999999999988887642 22345999999777653 37999999988653 3333321
Q ss_pred ------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC--------CCCCeEE
Q 013884 92 ------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN--------RGSTGLL 157 (434)
Q Consensus 92 ------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws--------~~G~~l~ 157 (434)
....+.+||++ ..+.++. ....+.|.+.|+.. ++.+.....-. ...-+.++ .||..+.
T Consensus 100 ~~~~~~~~~~~~ls~dg-k~l~V~n---~~p~~~V~VvD~~~---~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDN-KTLLFYQ---FSPSPAVGVVDLEG---KAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred hhhccCccceEEECCCC-CEEEEec---CCCCCEEEEEECCC---CcEEEEEeCCC-CcEEEEecCCccEEEeecCceEE
Confidence 23378999994 4443321 12246899999988 66666554421 11111222 2222221
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccee------
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP------ 230 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~------ 230 (434)
+. .|..++... ....+... ...++. ..| .+++ +|+++.+ .+. +.|.+.|+.+..
T Consensus 172 v~----~d~~g~~~~-----~~~~vf~~--~~~~v~-~rP----~~~~~dg~~~~v--s~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 172 VG----YGTKGNPKI-----KPTEVFHP--EDEYLI-NHP----AYSNKSGRLVWP--TYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EE----ecCCCceEE-----eeeeeecC--Cccccc-cCC----ceEcCCCcEEEE--ecC-CeEEEEecCCCcceecce
Confidence 11 111111100 00000000 000010 122 4455 8877775 333 899999963221
Q ss_pred EEEc---------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCC-
Q 013884 231 ILEL---------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGR- 292 (434)
Q Consensus 231 ~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~- 292 (434)
+..+ ..+...-++++|+|+.+.++..+. ..+.|.++|..+++.+..+. +..+..+++||||+
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence 1111 122233499999999888754221 12489999999999998876 45677799999999
Q ss_pred EEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 293 YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+|+++... ++.|.|.|. +++.+...
T Consensus 313 ~lyvtn~~-----s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTG-----DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCC-----CCcEEEEECcCCeEEeee
Confidence 76666532 788999998 44455543
No 212
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=2.2e-10 Score=106.84 Aligned_cols=236 Identities=12% Similarity=0.161 Sum_probs=154.0
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEe----------e-----cCcCCCCCCeeeecCCC-cEEEEe-cC
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVY---QLF----------Q-----KNMTKTTWPSIRFSSDE-AVACRM-AT 69 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~----------~-----~~~~~~~~~~~~~S~d~-~~la~~-~~ 69 (434)
.|+|+|.+. .|..|.|||+.--..+. ++. + .+.|...+..+.|..+- ..||++ .|
T Consensus 191 ~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 378999887 88999999984222111 110 0 01244555678888765 467777 46
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
.+|.+||+...........+...|..++|+|.....+. +++.+++|.++++... ......=-+.+++-.+.|
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL-----sGs~D~~V~l~D~R~~---~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL-----SGSYDGTVALKDCRDP---SNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE-----eccccceEEeeeccCc---cccCceEEeccceEEEEe
Confidence 79999999987765555566778999999998544443 4677889999998641 111111124567778999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
++......++. ++ | | .+|.+++........++. |+++|..+++++.-..+.+ ++..++.+.+|++..
T Consensus 338 ~~~se~~f~~~-td-d-------G--~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 338 DPHSENSFFVS-TD-D-------G--TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-TASTDKVVKLWKFDV 405 (463)
T ss_pred cCCCceeEEEe-cC-C-------c--eEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-eccccceEEEEeecC
Confidence 99877655543 21 1 1 355555544434444443 6889999999987776665 577899999998752
Q ss_pred e-----eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 229 R-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 229 ~-----~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
. ..+++.-+...|.++.|+--++++.|. ..+.++|||+.+..
T Consensus 406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG--~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG--EKAVLRVWDIFTNS 452 (463)
T ss_pred CCCcccccccccccceeecccCCCcceEEEecC--ccceEEEeecccCh
Confidence 2 223444445667778887765444332 44689999987764
No 213
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6e-10 Score=99.50 Aligned_cols=250 Identities=17% Similarity=0.231 Sum_probs=158.8
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC----CceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEE
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP----KGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~ 121 (434)
|++.+.++.|.+-|+.+|+++ |.+|.|||..+.. .....+.|...|..+.|.+-. +..+|+.. .+.++.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-----~Drtv~ 86 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-----YDRTVS 86 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-----cCCcee
Confidence 446778999999999999984 6799999964322 223345566778888886543 45666543 346789
Q ss_pred EEEcCCCCCC----Cc--eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCCce-eeeec
Q 013884 122 IYACGKDLQS----QP--LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHE-GLVPL 192 (434)
Q Consensus 122 i~~~~~~~~~----~~--i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~-~~v~l 192 (434)
||.-...+.. += ...+.-.+..+..+.|.|.--.|. ++....|...+.|..-.- |-...+..... ...+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk-lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK-LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE-EEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9986322111 11 122333467788899999655443 344457777776643211 11111111100 01112
Q ss_pred C-CCCCeEEEEECcC---CCEEEEEEccCC-----CeEEEEec-----cceeEEEc--CCcCeeEEEECCC-CC---eEE
Q 013884 193 R-KEGPVHDVQWSYS---GSEFAVVYGFMP-----ASATIFNK-----KCRPILEL--GSGPYNTVRWNPK-GK---FLC 252 (434)
Q Consensus 193 ~-~~~~i~~~~wspd---g~~~av~~g~~~-----~~i~l~d~-----~~~~~~~~--~~~~~~~i~~sP~-g~---~l~ 252 (434)
. ...+..++.|+|. ...||+ |++. +++.||.. +...+.++ ++.+|..|+|+|+ |+ +||
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAv--gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAV--GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ccccCcceEEeeccccccCceEEE--EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 1 2567789999974 235665 4433 27778743 23334444 6899999999996 33 677
Q ss_pred EEecCCCCCeEEEEEccC--------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 253 LAGFGNLPGDMAFWDYVD--------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~--------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
+|. .+| |+||.+.. -+.+..+..| .+..+.|.-.|..|.+++. ||++|
T Consensus 244 vA~---kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd------DG~VR 313 (361)
T KOG2445|consen 244 VAT---KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD------DGCVR 313 (361)
T ss_pred Eee---cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC------Cceee
Confidence 777 557 99999872 1355566666 4677999999999999999 99999
Q ss_pred EEeec
Q 013884 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
+|..+
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99863
No 214
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.9e-08 Score=97.11 Aligned_cols=262 Identities=15% Similarity=0.143 Sum_probs=151.4
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEe
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~ 76 (434)
..|++||++++|.+..... ..++.|..|++.. |+. +.+...... ... .+..+||+++|+.+ .++.|.+|+
T Consensus 40 s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~p~-~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGS--SPC-HIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSS--CEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCC--CcE-EEEEecCCCEEEEEEccCCeEEEEE
Confidence 4688999999999887321 2357888888765 433 333332211 223 68899999999887 468999999
Q ss_pred CCCCCCceee--ee------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---ee-
Q 013884 77 TTDFPKGILY--RL------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RS- 138 (434)
Q Consensus 77 ~~~~~~~~~~--~~------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~- 138 (434)
+......... .. .......+.++|++ .++. +++.+ ...|.+|++.... ..+.. ..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~--v~dlG--~D~v~~~~~~~~~--~~l~~~~~~~~ 188 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVY--VPDLG--ADRVYVYDIDDDT--GKLTPVDSIKV 188 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEE--EEETT--TTEEEEEEE-TTS---TEEEEEEEEC
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEE--EEecC--CCEEEEEEEeCCC--ceEEEeecccc
Confidence 9774321111 11 12346788999984 4432 22222 2478999987631 11222 11
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCCcee--eee-cC--C--CCCeEEEEECcCCCEE
Q 013884 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEG--LVP-LR--K--EGPVHDVQWSYSGSEF 210 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~--~v~-l~--~--~~~i~~~~wspdg~~~ 210 (434)
.....-..+.|+|+|+++.++.. .+.+.. ++.++. .+.... .+. +. . .....+++++|||+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~-------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNE--LSNTVS-------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEET--TTTEEE-------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecC--CCCcEE-------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence 12344568999999999877532 222221 222221 111111 111 11 1 2257899999999988
Q ss_pred EEEEccCCCeEEEEeccc--ee---EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEEEE---Eee
Q 013884 211 AVVYGFMPASATIFNKKC--RP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLG---TTR 278 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~--~~---~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~---~~~ 278 (434)
.+ +......|.+|+++. .. +..+ ....-..+.++|+|++|+++..+. +.|.+|++ +++++.. ...
T Consensus 260 yv-snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf~~d~~tG~l~~~~~~~~ 336 (345)
T PF10282_consen 260 YV-SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS--NTVSVFDIDPDTGKLTPVGSSVP 336 (345)
T ss_dssp EE-EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEEE
T ss_pred EE-EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--CeEEEEEEeCCCCcEEEeccccc
Confidence 87 455567999999831 12 2222 233346799999999999998654 68999876 4665432 245
Q ss_pred CCCceEEEE
Q 013884 279 AECSVTSEW 287 (434)
Q Consensus 279 ~~~~~~~~w 287 (434)
.+.++++.|
T Consensus 337 ~~~p~ci~f 345 (345)
T PF10282_consen 337 IPSPVCIVF 345 (345)
T ss_dssp SSSEEEEEE
T ss_pred CCCCEEEeC
Confidence 567777665
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.7e-09 Score=97.17 Aligned_cols=237 Identities=15% Similarity=0.206 Sum_probs=149.2
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee--EEEEeCCCCCeEEEEecC--CCCCCceEEEEEcCCCC
Q 013884 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA--AFEVSKAPGSHVAVFVPE--SKGSPASVQIYACGKDL 129 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~--~~~~sp~~~~~ia~~~~~--~~~~~~~v~i~~~~~~~ 129 (434)
++.|+.|..-++.+.+.-.+||+.+-+...........++. .+-+= .+++|+.-.. ..-.+..|.|||--.
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k-- 84 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK-- 84 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc--
Confidence 68999999999999999999999876543222223333311 11111 2334433211 123467899999433
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcC-C
Q 013884 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYS-G 207 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspd-g 207 (434)
..++...+| ..++..+...++ .|+++. ... ||.+.-...-.....++. ..|---.+..|. +
T Consensus 85 -~~~i~el~f-~~~I~~V~l~r~--riVvvl----~~~---------I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 85 -ERCIIELSF-NSEIKAVKLRRD--RIVVVL----ENK---------IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred -CcEEEEEEe-ccceeeEEEcCC--eEEEEe----cCe---------EEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence 666766665 446677777664 454432 112 232221111111111110 111113344453 2
Q ss_pred CEEEEEEccCCCeEEEEeccce-----eEEEcCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC-
Q 013884 208 SEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE- 280 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~-----~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~- 280 (434)
+.+.+.-|...|.|+|-|+... .+...|...+.+++.+-+|..||+++ ..| -|+|||..+++.+..+...
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEEcCCCcEeeeeecCC
Confidence 3444445777889999998532 23345899999999999999999998 334 5899999999988877543
Q ss_pred ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee
Q 013884 281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~ 321 (434)
.+.+++||||+.+|++++. -++++|+.+.+....+
T Consensus 225 d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTENTE 262 (346)
T ss_pred chheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCCCCc
Confidence 5566999999999999999 9999999997755443
No 216
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1e-09 Score=98.14 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=162.6
Q ss_pred CCCCeeeecCCCcEE-EEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVA-CRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~l-a~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
+.+..+.|+|.++.| +++=|+++++|++...+.... --+...+.+.+|.+. ..+. .++.++.|+.+|+..
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d~--~~~~-----~G~~dg~vr~~Dln~- 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFADE--STIV-----TGGLDGQVRRYDLNT- 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccCC--ceEE-----EeccCceEEEEEecC-
Confidence 677789999876655 455689999999987653222 222335777777764 2222 357889999999976
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~ 208 (434)
....++.-|...+.++..++.-..+ .++..|++.+.|.+.+. .....++....|+++..+ |+
T Consensus 85 ---~~~~~igth~~~i~ci~~~~~~~~v---IsgsWD~~ik~wD~R~~----------~~~~~~d~~kkVy~~~v~--g~ 146 (323)
T KOG1036|consen 85 ---GNEDQIGTHDEGIRCIEYSYEVGCV---ISGSWDKTIKFWDPRNK----------VVVGTFDQGKKVYCMDVS--GN 146 (323)
T ss_pred ---CcceeeccCCCceEEEEeeccCCeE---EEcccCccEEEEecccc----------ccccccccCceEEEEecc--CC
Confidence 3334455577778888888644432 23446777776654321 111223335577777765 66
Q ss_pred EEEEEEccCCCeEEEEeccceeE-EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC
Q 013884 209 EFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA 279 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~~~~~-~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~ 279 (434)
.|+| |..+.++.+||++.... ++. -+-.+.+++.-|++.=.++++ .+|.|.+=..+.. +.-..+..
T Consensus 147 ~LvV--g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 147 RLVV--GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred EEEE--eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEe
Confidence 7775 66688999999974322 111 245678999999888777777 5677665433322 22222222
Q ss_pred C-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec--ccceeeEEEcCCCCCCC
Q 013884 280 E-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF--DKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 280 ~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~--~~~~~~~w~p~~~~~~~ 341 (434)
| .+..++|+|-...|+||+. ||-|-+||...+ .+.+.+. ..+..++++-++..|.-
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence 2 3455999999999999999 999999998654 3333322 34777777777655443
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.31 E-value=1.7e-09 Score=108.13 Aligned_cols=261 Identities=13% Similarity=0.178 Sum_probs=157.4
Q ss_pred CcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCCCCCcee------eeeecCCeeEE
Q 013884 26 KNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTDFPKGIL------YRLRVPGVAAF 96 (434)
Q Consensus 26 ~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~~~~~~~------~~~~~~~v~~~ 96 (434)
..+.||++.+- ..-..+... ..++++.|+|. ..+||.| .+|+|.+||+........ ..-|.+.+..+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47999999776 333334333 56779999994 5666666 468999999876543111 11223456666
Q ss_pred EEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---------ecccceeEEEECCCCCeEEEEEEeccc
Q 013884 97 EVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---------FFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 97 ~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---------~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
.|-.+..+ .+. ...++.|..|++............. --......++|.+......++. ++
T Consensus 298 vW~~~~~~~~f~s------~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG-Te-- 368 (555)
T KOG1587|consen 298 VWLQNEHNTEFFS------LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG-TE-- 368 (555)
T ss_pred EEeccCCCCceEE------EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE-cC--
Confidence 66654333 222 2347889999887643211111111 1123445667766544433321 11
Q ss_pred ccCceeecceeEEEEeeCCCce--------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc-
Q 013884 166 KTNQSYYGESKLNYLTTDGTHE--------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL- 234 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~--------~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~- 234 (434)
.|..+.| .-.+... ......+.++|+.+.++|=+..+....| |-.++||... ..++..+
T Consensus 369 -~G~v~~~-------~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 369 -EGKVYKG-------CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred -CcEEEEE-------eccCCcccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhh
Confidence 1222221 1111111 1122335799999999998887776555 6799999765 5566655
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l~tas~~~rl~~D~~i 309 (434)
+...+.+++|||----+...+. .+|+|.|||+... +.+.+.. ......+.|+++|+.|++|.. .|.+
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~------~G~~ 510 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA------NGTT 510 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC------CCcE
Confidence 4566899999997654444443 5699999998643 2333222 223344899999999999998 8999
Q ss_pred EEEeecCc
Q 013884 310 KIFHHNGS 317 (434)
Q Consensus 310 ~iw~~~g~ 317 (434)
++|++...
T Consensus 511 ~~~~l~~~ 518 (555)
T KOG1587|consen 511 HILKLSES 518 (555)
T ss_pred EEEEcCch
Confidence 99997544
No 218
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.29 E-value=2.9e-10 Score=100.66 Aligned_cols=246 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred cceEEecCCC-cEEEEEecCCCCC--CCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQ--EKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~--d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|+.|+=||-. +.|+|+-...++. -....||.+... +++..+.... ...+.|+.|-||+.-|+++.+
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea--vg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA--VGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH--hCceeeEEEcCCCCeeEEecc
Confidence 5667777744 5555654322111 135789988432 2233333221 246679999999999999999
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
+.|.+|++.+.... ...+ .++. +.+ +.....+-+|
T Consensus 144 n~i~l~~l~ess~~-vaev---------~ss~-----------s~e------------------------~~~~ftsg~W 178 (370)
T KOG1007|consen 144 NNIVLWSLDESSKI-VAEV---------LSSE-----------SAE------------------------MRHSFTSGAW 178 (370)
T ss_pred CceEEEEcccCcch-heee---------cccc-----------ccc------------------------ccceeccccc
Confidence 99999998774431 1100 1111 000 0111224467
Q ss_pred CC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 150 NR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 150 s~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
|| +|+.++.. .|.+ |..+++... .+...+. +...|.++.|.|+-..+.+ ++..|+.|+|||
T Consensus 179 spHHdgnqv~tt----~d~t---------l~~~D~RT~-~~~~sI~dAHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD 243 (370)
T KOG1007|consen 179 SPHHDGNQVATT----SDST---------LQFWDLRTM-KKNNSIEDAHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWD 243 (370)
T ss_pred CCCCccceEEEe----CCCc---------EEEEEccch-hhhcchhhhhcceeeeccCCCCceEEEE-EcCCCccEEEEe
Confidence 77 67766553 2333 333333222 1111221 2456889999998776665 677899999999
Q ss_pred cc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC---------------------E-------
Q 013884 226 KK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG---------------------K------- 272 (434)
Q Consensus 226 ~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~---------------------~------- 272 (434)
.+ ..+++++ |..-+-++.|+|.-. +|+++|.| ..|.+|...+- +
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD---s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD---SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCC---ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 97 4567777 567789999999654 66666644 47887764320 0
Q ss_pred -EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 273 -QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 273 -~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+.++..| .+..++||.-...+...-++ ||.+.|=.+.-.
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSY-----DGRviIs~V~r~ 363 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSY-----DGRVIISSVPRF 363 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEecc-----CceEEeecCChh
Confidence 22334444 44459999877765554443 777777655443
No 219
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.7e-08 Score=89.77 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=154.3
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCC--CCceeeeeec--CCeeE
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDF--PKGILYRLRV--PGVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~--~~~~~~~~~~--~~v~~ 95 (434)
+++.|.+|++.+.+--.+..+.-.......-+.|+|+.++|.++. .+.|-.|.++.. ......+... ..-..
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 578899999863321111111111124455789999999888872 357877777642 2111111111 22356
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc----------eeEEEECCCCCeEEEEEEeccc
Q 013884 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----------TVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----------~~~~~ws~~G~~l~~~~~~~~d 165 (434)
+++++++ .++.+.. =..+.|.++.+.....-....+...|... .....+.|+|++|++.. -
T Consensus 94 vsvd~~g-~~vf~An----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L--- 164 (346)
T COG2706 94 VSVDEDG-RFVFVAN----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L--- 164 (346)
T ss_pred EEECCCC-CEEEEEE----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-c---
Confidence 7777773 3332211 11246777776542111112122222222 45667899999987642 1
Q ss_pred ccCceeecceeEEEEeeCCCceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEE------c-
Q 013884 166 KTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILE------L- 234 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~------~- 234 (434)
++.+. .+|.++ +|...... .+.....-..+.|+|+++...++ ..-+++|.+|..+. ..+.. +
T Consensus 165 G~Dri-----~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRI-----FLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceE-----EEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 12221 244444 33222111 12234456789999999877665 66688999987643 22221 1
Q ss_pred ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEe--eCCCceEEEECCCCCEEEEEEcCCcee
Q 013884 235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 235 ----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~--~~~~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
+....-.|..+|||++|.++..+. ..|.+|.+. +++ .+... .+...-.+.++|+|++|+++...
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~---- 311 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK---- 311 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence 234456799999999999987764 367777665 343 22222 23356679999999999999884
Q ss_pred eCCcEEEEeecC
Q 013884 305 IDNGIKIFHHNG 316 (434)
Q Consensus 305 ~D~~i~iw~~~g 316 (434)
++.|.||..+.
T Consensus 312 -sd~i~vf~~d~ 322 (346)
T COG2706 312 -SDNITVFERDK 322 (346)
T ss_pred -CCcEEEEEEcC
Confidence 56799998844
No 220
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=6.5e-08 Score=91.89 Aligned_cols=244 Identities=10% Similarity=0.092 Sum_probs=137.4
Q ss_pred ecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCeEE
Q 013884 7 CLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNEIQ 73 (434)
Q Consensus 7 fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~i~ 73 (434)
+||||++|..+..+. +..+..|.|||+.+++.+..+..... -...+ .+++||||++|.... ++.|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~-~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW-MTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc-eEEECCCCCEEEEecCCCCCEEE
Confidence 999999999887521 23468899999999999988764321 01223 678999999988663 57999
Q ss_pred EEeCCCCCCceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE----E
Q 013884 74 FFDTTDFPKGILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL----N 148 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~----~ 148 (434)
|.|+.... ....+..++-.. +..+.+ ..++ .+ .+ +......+.... .....+..+|..+..-+ .
T Consensus 132 VvD~~~~k--vv~ei~vp~~~~vy~t~e~-~~~~-~~-~D-----g~~~~v~~d~~g-~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 132 VVDLEGKA--FVRMMDVPDCYHIFPTAND-TFFM-HC-RD-----GSLAKVGYGTKG-NPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EEECCCCc--EEEEEeCCCCcEEEEecCC-ccEE-Ee-ec-----CceEEEEecCCC-ceEEeeeeeecCCccccccCCc
Confidence 99998754 333444443222 222221 1111 11 11 111111121110 11111222222111000 1
Q ss_pred -ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecC------CCCCeEEEEECcCCCEEEEEE-
Q 013884 149 -WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR------KEGPVHDVQWSYSGSEFAVVY- 214 (434)
Q Consensus 149 -ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~------~~~~i~~~~wspdg~~~av~~- 214 (434)
+..+|+++.+.. . ..++.++..+... ..++.. ..+.+.-++++|+|+++.|..
T Consensus 201 ~~~~dg~~~~vs~-----------e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 201 YSNKSGRLVWPTY-----------T--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred eEcCCCcEEEEec-----------C--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 233777655431 1 1355555322110 011111 133445599999999998842
Q ss_pred cc------CC-CeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 215 GF------MP-ASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 215 g~------~~-~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+. ++ ..|.++|.+... +..+. ......+++||||+ +|++... ..+.|.++|..+++.+..+
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeEEeee
Confidence 21 11 389999997554 34443 45677899999999 6665543 2468999999999999887
No 221
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.4e-10 Score=111.08 Aligned_cols=247 Identities=11% Similarity=0.108 Sum_probs=155.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--------CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--------GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEI 72 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--------g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i 72 (434)
|+++.|.|-...|+|++ +|+.|++|+++. -+.+.+|..+. ..|.|+..++++.++.++ .|++|
T Consensus 297 ir~l~~~~sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred hhhhhcCCCCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEecCCceEEEeeccCcee
Confidence 67888999999999999 999999999922 14567777654 788899999999999998 58899
Q ss_pred EEEeCCCCC----------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 73 QFFDTTDFP----------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 73 ~v~~~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+.|+++... .......|.+.+..+++|+..+.++.+ ..+++|++|.... ..+ ++...-+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc------s~DgTvr~w~~~~---~~~-~~f~~~~e 438 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC------SSDGTVRLWEPTE---ESP-CTFGEPKE 438 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee------cCCceEEeeccCC---cCc-cccCCccc
Confidence 999764211 012244566778889999885554432 5568999999876 333 11111111
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-----ec-CCCCCeEEEEECcCCCEEEEEEcc
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PL-RKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l-~~~~~i~~~~wspdg~~~av~~g~ 216 (434)
...-+...-.+..++.+. .+... +...++.+++... ...+ +. .....+.-+.|+|++...+ ++.
T Consensus 439 ~g~Plsvd~~ss~~a~~~---~s~~~----~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~--~~h 508 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSL---ASFRF----GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITF--TAH 508 (577)
T ss_pred cCCcceEeeccchhHhhh---hhccc----ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeE--ecc
Confidence 111111111111111110 00000 1111221111110 0000 00 0124577899999886555 578
Q ss_pred CCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 217 ~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
.+..|++||.+ +..+++. |...++++++-|+|-+|+++. .+|.+.+|......++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s---~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS---HDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccceecceeecCCCceEEeec---CCceeehhhccchheeecccc
Confidence 89999999985 5556554 788899999999999999998 556999998876655554433
No 222
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.2e-09 Score=92.01 Aligned_cols=262 Identities=8% Similarity=0.086 Sum_probs=161.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---------c-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---------E-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|.+-++||.++||+... .++.|.+..+.+. + .+-.+.. |...+-.+.|. ..+|++++++.
T Consensus 13 vf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~--d~~Lls~gdG~ 82 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFH--DDFLLSGGDGL 82 (325)
T ss_pred HHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeee--hhheeeccCce
Confidence 34557899999999988 7899999987432 1 1222222 33455567776 56777888899
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
|+=|.-..+... .+. -++|.+.. +...-...--++..|...|
T Consensus 83 V~gw~W~E~~es----~~~-----------------------------K~lwe~~~-----P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 83 VYGWEWNEEEES----LAT-----------------------------KRLWEVKI-----PMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred EEEeeehhhhhh----ccc-----------------------------hhhhhhcC-----ccccCcccCCccceeEecc
Confidence 998887664321 000 01111110 0000000001223444455
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP- 230 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~- 230 (434)
..+.|++.. |+..+|.+++..+...+.--.+...||++.--....++. +|.+|+++++||.++..
T Consensus 125 ~enSi~~Ag------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil--sG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 125 SENSILFAG------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL--SGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCCcEEEec------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee--ecCCCccEEEEeccccce
Confidence 555554432 333577777766655555556688999998844344555 69999999999997543
Q ss_pred EEEcCC-cCeeE---------EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEc
Q 013884 231 ILELGS-GPYNT---------VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATT 299 (434)
Q Consensus 231 ~~~~~~-~~~~~---------i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~ 299 (434)
+..++. ..-++ .+..-+..+|++|+.- .+.+|++.+.+....+.-+.... +.|--| .++.++.
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp----~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP----KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEeccCceEEecCCC----ceeEEeccCCCceEEEecccceeEeeeecc--eEEEecc
Confidence 333210 01111 2233355677776533 69999999998888877664443 777554 6777777
Q ss_pred CCceeeCCcEEEEeecCceeeeeecc--cceeeEEEcCCC
Q 013884 300 APRLQIDNGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSP 337 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~ 337 (434)
.|.+.-|.++|.+-...+.+ -++...|+-.|-
T Consensus 265 ------g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 265 ------GNHVQSYTLNGVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred ------ccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence 89999999999987776654 577888887763
No 223
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.25 E-value=1.9e-09 Score=99.28 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=139.2
Q ss_pred cCCCCCCeeeecC-CCcEEEEecCC-eEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884 47 MTKTTWPSIRFSS-DEAVACRMATN-EIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 47 ~~~~~~~~~~~S~-d~~~la~~~~~-~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
.|...+..+.|.| ++..+|+++++ +|.||+++.... ......|...|..++|+|.-.+.++ +.+.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLl-----sag~D 153 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLL-----SAGSD 153 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHh-----hccCC
Confidence 3668888999999 77888998765 999999976432 1234456677889999997444443 45778
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC-C
Q 013884 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-G 196 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~ 196 (434)
..|.||++.+ +..+.++. |..-+.++.||-+|..++.. ..|+..+.+.....-..-+. ..++ .
T Consensus 154 n~v~iWnv~t---geali~l~-hpd~i~S~sfn~dGs~l~Tt---ckDKkvRv~dpr~~~~v~e~---------~~heG~ 217 (472)
T KOG0303|consen 154 NTVSIWNVGT---GEALITLD-HPDMVYSMSFNRDGSLLCTT---CKDKKVRVIDPRRGTVVSEG---------VAHEGA 217 (472)
T ss_pred ceEEEEeccC---CceeeecC-CCCeEEEEEeccCCceeeee---cccceeEEEcCCCCcEeeec---------ccccCC
Confidence 8999999988 66666666 88889999999999986543 37777776543322111100 1112 2
Q ss_pred CeEEEEECcCCCEEEEEEcc---CCCeEEEEecc----ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 197 PVHDVQWSYSGSEFAVVYGF---MPASATIFNKK----CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~----~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
.-..+.|-.+|+.|. +|+ .+.++.|||.+ .....++ ....+.--.|.||..+|.++|.|. |.|+.|.+
T Consensus 218 k~~Raifl~~g~i~t--TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD--~~IRYyEi 293 (472)
T KOG0303|consen 218 KPARAIFLASGKIFT--TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD--SSIRYFEI 293 (472)
T ss_pred CcceeEEeccCceee--eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC--cceEEEEe
Confidence 234566777888433 565 34589999864 2233444 345667778999999999998765 89999998
Q ss_pred cCCE
Q 013884 269 VDGK 272 (434)
Q Consensus 269 ~~~~ 272 (434)
.+-.
T Consensus 294 t~d~ 297 (472)
T KOG0303|consen 294 TNEP 297 (472)
T ss_pred cCCC
Confidence 7653
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=7.2e-10 Score=100.38 Aligned_cols=264 Identities=14% Similarity=0.226 Sum_probs=155.8
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC---CcE-EEE-EeecCc---------CCCCCCeeeecCCCc---E
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET---GEA-VYQ-LFQKNM---------TKTTWPSIRFSSDEA---V 63 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~-~~~-~~~~~~---------~~~~~~~~~~S~d~~---~ 63 (434)
+|.+|.|...|.||+|+. .++.|.++.-.. |+. .++ |+.+.. -.+.+..+.|-+++. +
T Consensus 27 iis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred ceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 588999999999999988 678888885322 211 222 222211 013456788988775 4
Q ss_pred EEEecCCeEEEEeCCCCCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Cceee--
Q 013884 64 ACRMATNEIQFFDTTDFPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLAR-- 136 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~~-- 136 (434)
|++..+.+|++|.+....... ...+..+ +.++.+.-..+|...+. .....
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~-----------------------~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEE-----------------------GPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred EEecCCcceeeeeeecccccccccccccc-----------------------CCCCccceeeceeeccccceeeeeeeee
Confidence 555567799999987643211 0000000 01111111111111000 00011
Q ss_pred -eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC------CCCeEEEEECcCCCE
Q 013884 137 -RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSE 209 (434)
Q Consensus 137 -~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~ 209 (434)
...|...+.++..|.|+..++.. .|.. .+||.+++....-.+|.+.. ..-|++..|+|....
T Consensus 159 ~aNaHtyhiNSIS~NsD~Et~lSA----DdLR-------INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn 227 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDKETFLSA----DDLR-------INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN 227 (433)
T ss_pred ccccceeEeeeeeecCccceEeec----ccee-------eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence 12345566788889988875442 1222 24666655443333443321 346788999996544
Q ss_pred EEEEEccCCCeEEEEeccceeEE-------EcC------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-
Q 013884 210 FAVVYGFMPASATIFNKKCRPIL-------ELG------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV- 269 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~~~~~~-------~~~------------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~- 269 (434)
+.+ |.+.-|.|+|.|++...+- +.. ...|..+.||+.|+||++-.+- +|.+||++
T Consensus 228 ~f~-YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~nm 302 (433)
T KOG1354|consen 228 VFV-YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLNM 302 (433)
T ss_pred EEE-EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEeccc
Confidence 333 5667889999999833221 111 2345679999999999986543 79999985
Q ss_pred CCEEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 270 DGKQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 270 ~~~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
..+.+.+++-| ++ ..|+||-++.+++||+. .|-+++++.
T Consensus 303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy------~n~frvf~~ 358 (433)
T KOG1354|consen 303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY------NNVFRVFNL 358 (433)
T ss_pred cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc------cceEEEecC
Confidence 33444443322 22 23899999999999999 999999995
No 225
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.24 E-value=1.8e-10 Score=103.64 Aligned_cols=240 Identities=13% Similarity=0.172 Sum_probs=146.3
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEE
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEV 98 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~ 98 (434)
.-+.|+|.|+.++++...+.++. ..+..+.|-|+. +++++++ |..|++|++.+.....+. ..|-..|-++.|
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ceeEEEEEecchhhhccceeccC---ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 34789999999999988887765 677789999976 5666664 569999999886543222 335567999999
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
+++++ .|+ +.|.+-++.+|+++.. .+...-...+.|+|+++..=+-+ ... .+.
T Consensus 190 ~~~gd-~i~-----ScGmDhslk~W~l~~~---------~f~~~lE~s~~~~~~~t~~pfpt-----~~~-------~fp 242 (385)
T KOG1034|consen 190 SLDGD-RIA-----SCGMDHSLKLWRLNVK---------EFKNKLELSITYSPNKTTRPFPT-----PKT-------HFP 242 (385)
T ss_pred cCCCC-eee-----ccCCcceEEEEecChh---------HHhhhhhhhcccCCCCccCcCCc-----ccc-------ccc
Confidence 99965 554 4688899999999741 12222334567777776421110 000 000
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-c--------------ceeEEEc--CCcCee-
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-K--------------CRPILEL--GSGPYN- 240 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~--------------~~~~~~~--~~~~~~- 240 (434)
.+..... |..+|-++.|-- + |++..+. .+.|..|-. + +..+.++ ....+-
T Consensus 243 ~fst~di--------HrnyVDCvrw~g--d-~ilSksc-enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 243 DFSTTDI--------HRNYVDCVRWFG--D-FILSKSC-ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred ccccccc--------ccchHHHHHHHh--h-heeeccc-CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 0000011 123333444432 1 2221222 224444422 0 1111222 233333
Q ss_pred -EEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 241 -TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 241 -~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
..+|.|-+++||+|+ ..|+|++||++..+. ..++.++ .+-..+||-||..|+.... |+.|.-||
T Consensus 311 irf~~d~~~~~la~gn---q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd------d~~Vwrwd 381 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGN---QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD------DGTVWRWD 381 (385)
T ss_pred EEEeecHHHHHHhhcc---CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC------CCcEEEEE
Confidence 356678889999887 668999999987643 2222222 3444999999999999998 99999998
Q ss_pred e
Q 013884 314 H 314 (434)
Q Consensus 314 ~ 314 (434)
.
T Consensus 382 r 382 (385)
T KOG1034|consen 382 R 382 (385)
T ss_pred e
Confidence 5
No 226
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.24 E-value=1.3e-08 Score=98.60 Aligned_cols=276 Identities=12% Similarity=0.116 Sum_probs=155.1
Q ss_pred cCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884 8 LRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 8 SP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
||||+|++....... +..+.+.|+|+.+++........ .....+.|||||+++|...++.|.+++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-- 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-- 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE--
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc----cccccceeecCCCeeEEEecCceEEEECCCCC--
Confidence 899999997542111 12467999999998754433321 34447899999999999999999999875532
Q ss_pred eeeeee--------------------cCCeeEEEEeCCCCCeEEEEecC-C----------------------------C
Q 013884 84 ILYRLR--------------------VPGVAAFEVSKAPGSHVAVFVPE-S----------------------------K 114 (434)
Q Consensus 84 ~~~~~~--------------------~~~v~~~~~sp~~~~~ia~~~~~-~----------------------------~ 114 (434)
..++. +..-..+-|||+ +..|+++.-+ + +
T Consensus 75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred -eEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 12222 123456789999 4555554211 1 0
Q ss_pred CCCc--eEEEEEcCCCCCCCceeee---eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884 115 GSPA--SVQIYACGKDLQSQPLARR---SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 115 ~~~~--~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
.... .+.++++.+.. ...+... ..-......+.|.+++..+++.... .+... ..+..++...+....
T Consensus 153 ~~np~v~l~v~~~~~~~-~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n-R~q~~------~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGK-TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN-RDQNR------LDLVLCDASTGETRV 224 (353)
T ss_dssp S---EEEEEEEESSSTC-CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE-TTSTE------EEEEEEEECTTTCEE
T ss_pred CcCCceEEEEEECCCCc-EEEeeeccccCCCccCcccceecCCCcEEEEEEcc-cCCCE------EEEEEEECCCCceeE
Confidence 1111 34445554421 0011111 0112344678999999866665433 22211 124455543322111
Q ss_pred -eecCCCCC---eEEEEEC-cCCCEEEEEEccCCC--eEEEEeccceeEEEcC--CcCee-EEEECCCCCeEEEEecCC-
Q 013884 190 -VPLRKEGP---VHDVQWS-YSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYN-TVRWNPKGKFLCLAGFGN- 258 (434)
Q Consensus 190 -v~l~~~~~---i~~~~ws-pdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~--~~~~~-~i~~sP~g~~l~~~~~~~- 258 (434)
.....++- -..+.|. +++..|+.++- .++ .|.+++..+.....+. .-.|+ -+.|+++++.|...+...
T Consensus 225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred EEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 11111222 2356665 89998888765 666 6777788877766664 44454 478999998776555432
Q ss_pred -CCCeEEEEEcc-CCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013884 259 -LPGDMAFWDYV-DGKQLGTTRAECSV-TSEWSPDGRYFMTATTA 300 (434)
Q Consensus 259 -~~g~i~iwd~~-~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~ 300 (434)
..-.|+..+++ .++........... .+.|||||++++...+.
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 23456666777 55554444333333 79999999999987764
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.23 E-value=7.9e-09 Score=100.04 Aligned_cols=296 Identities=15% Similarity=0.189 Sum_probs=162.1
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~ 89 (434)
+++++..++ .++.|.|.|..+.+.+..+.... ..-..+.|||||+++.... ++.|.++|+.+.. ...++.
T Consensus 5 ~~l~~V~~~----~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 5 GNLFYVVER----GSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GGEEEEEEG----GGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred ccEEEEEec----CCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence 345555553 57899999999999999987642 1111468999999887764 6899999998865 334444
Q ss_pred c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------cceeEEEECCCCCeEEEEEE
Q 013884 90 V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 90 ~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~ 161 (434)
. .....+++|+++. ++.+- ...++.+.++|..+ .+++....... ...+.+.-++.+...++.
T Consensus 76 ~G~~~~~i~~s~DG~-~~~v~----n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~-- 145 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGK-YVYVA----NYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN-- 145 (369)
T ss_dssp -SSEEEEEEE--TTT-EEEEE----EEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE--
T ss_pred cCCCcceEEEcCCCC-EEEEE----ecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEE--
Confidence 3 3467899999954 43321 12345899999877 55666554332 123455556666643332
Q ss_pred ecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CC-
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GS- 236 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~- 236 (434)
...++ .++.++....... ...+......++..|+|++++|++. .....++.++|.+...+ ..+ +.
T Consensus 146 --lkd~~-------~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 146 --LKDTG-------EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp --ETTTT-------EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred --EccCC-------eEEEEEeccccccceeeecccccccccccCcccceeeec-ccccceeEEEeeccceEEEEeecccc
Confidence 11122 3555553332111 1122335678999999999999874 44455999999864432 222 11
Q ss_pred ---cCee-------EEEECCC--CCeE-EEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc-CC
Q 013884 237 ---GPYN-------TVRWNPK--GKFL-CLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT-AP 301 (434)
Q Consensus 237 ---~~~~-------~i~~sP~--g~~l-~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~-~~ 301 (434)
.+.. ...|.-. +.+. ...+. +.+.+||..+.+.+..+... ....+.-+||++++.+... .|
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~----~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~ 291 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT----DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP 291 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S
T ss_pred ccccccccccCCCcceEEeeccccceecccccC----CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC
Confidence 1111 1223222 2222 22222 24667888888888887754 3355889999999999822 22
Q ss_pred ceeeCCcEEEEeecCce-eeeee-cc--cceeeEEEcCCCCCCCC
Q 013884 302 RLQIDNGIKIFHHNGSL-FFKKM-FD--KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~~-~~~~~-~~--~~~~~~w~p~~~~~~~~ 342 (434)
. .+.|.|+|..... +.... .. .+..+.|.|++..++-+
T Consensus 292 ~---~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 292 D---ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp S---HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred C---CceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 2 6899999986643 33321 12 37788888888877654
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.8e-10 Score=104.09 Aligned_cols=194 Identities=15% Similarity=0.236 Sum_probs=128.7
Q ss_pred eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884 94 AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 94 ~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g 173 (434)
..++++++ +..++ .++.++.+|+|+.|+ ...+.....+..++-++.|+|||+.|+.+. .| ....|.-
T Consensus 148 k~vaf~~~-gs~la-----tgg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLA-----TGGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVWSV 214 (398)
T ss_pred eEEEEcCC-CCEee-----eccccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEEEe
Confidence 34556655 44555 367889999999998 677777777888999999999999877653 22 2332221
Q ss_pred ceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEecc---c-ee--EEEc--CCcCeeEE
Q 013884 174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-RP--ILEL--GSGPYNTV 242 (434)
Q Consensus 174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg---~~~av~~g~~~~~i~l~d~~---~-~~--~~~~--~~~~~~~i 242 (434)
.+. ..+ ...-+.+++.....+.|+-|+ ..++.......+.+..+|+. . +. ..+. ....+.++
T Consensus 215 ~~g-~~~------a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 215 NTG-AAL------ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred ccC-chh------hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 111 111 111123345556677888776 22222122222355555542 1 11 1111 34578999
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+.|+||+++++|+ ++|.|-|++..+.+++.... +| .++.++|+||.+++++.+. |+.+.|..+..
T Consensus 288 ~VS~dGkf~AlGT---~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v 355 (398)
T KOG0771|consen 288 AVSDDGKFLALGT---MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV 355 (398)
T ss_pred EEcCCCcEEEEec---cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence 9999999999999 67899999999988776654 34 5566999999999999777 99999988865
No 229
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=4.7e-10 Score=100.44 Aligned_cols=235 Identities=13% Similarity=0.169 Sum_probs=162.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc------CC------------------------------C----cEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT------ET------------------------------G----EAVYQ 41 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~------~~------------------------------g----~~~~~ 41 (434)
|.+|.|+|.|.+++|.+ .|.+-+||.. .. | .++..
T Consensus 193 VNsikfh~s~~L~lTaS-----GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 193 VNSIKFHNSGLLLLTAS-----GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred eeeEEeccccceEEEcc-----CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 78999999999999988 6777777751 11 0 01223
Q ss_pred EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884 42 LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
+.+ |...+.+..|-..|+.+++++ |.+..+||+...+.......|....+.++-+|. ..++.. ...+.+.
T Consensus 268 ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvT-----sSrDtTF 338 (481)
T KOG0300|consen 268 LTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVT-----SSRDTTF 338 (481)
T ss_pred eec---cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-ceEEEE-----eccCcee
Confidence 333 335565778888999999886 679999999987765556666666777777775 233322 2445689
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
++|++... -+.+.....|...+.+..|+.+.+ +.+...|.+.+.| .+. .......++....+++.
T Consensus 339 RLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~----vVSgSDDrTvKvW-------dLr--NMRsplATIRtdS~~NR 403 (481)
T KOG0300|consen 339 RLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR----VVSGSDDRTVKVW-------DLR--NMRSPLATIRTDSPANR 403 (481)
T ss_pred Eeccchhh--cceeeeecccccceeEEEEecCCc----eeecCCCceEEEe-------eec--cccCcceeeecCCccce
Confidence 99998642 455666677888888999998776 3445567777644 332 22233444445789999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-------CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEEccC
Q 013884 201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-------GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 201 ~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-------~~~~~~~i~~sP~g--~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
++.+..+..+++ ...+..|+|||+.++-+..+ |..-+.|++|+.+- .-|+++|||. .+.=|.+..
T Consensus 404 vavs~g~~iIAi--PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR---~v~gW~in~ 477 (481)
T KOG0300|consen 404 VAVSKGHPIIAI--PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR---MVAGWKINT 477 (481)
T ss_pred eEeecCCceEEe--ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc---eeeeeEecc
Confidence 999987777775 44556999999988765544 45567899997654 3567788776 777787653
No 230
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.21 E-value=2.8e-10 Score=102.44 Aligned_cols=226 Identities=11% Similarity=0.140 Sum_probs=130.6
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
|..|.|.|+. ++|++++ +|..|++|+++++.++.-|.+-..|...+.++.|+.||.+++++ .|.+|++|+++.
T Consensus 138 INeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred chhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 6678899975 6888888 89999999999999999988877788999999999999999988 567999999985
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE------CCCC
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW------NRGS 153 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w------s~~G 153 (434)
.+.. -+++ .++.|+|++...- | |. ..+.+.+.. +...|...+-++.| |..+
T Consensus 213 ~~f~----~~lE--~s~~~~~~~t~~p--f-pt-----~~~~fp~fs---------t~diHrnyVDCvrw~gd~ilSksc 269 (385)
T KOG1034|consen 213 KEFK----NKLE--LSITYSPNKTTRP--F-PT-----PKTHFPDFS---------TTDIHRNYVDCVRWFGDFILSKSC 269 (385)
T ss_pred hHHh----hhhh--hhcccCCCCccCc--C-Cc-----ccccccccc---------ccccccchHHHHHHHhhheeeccc
Confidence 3211 1111 1245666531100 0 00 001111110 11112211111111 2222
Q ss_pred CeEEEEEEecccccCceeecceeEEEEe-eCCCc--eeeeecCCCCCeEE--EEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLT-TDGTH--EGLVPLRKEGPVHD--VQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~-~~~~~--~~~v~l~~~~~i~~--~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
..-++++... +... .++.+. ..... -..+.++ ...|.- ++|.|-++.+| .|...+++.+||++.
T Consensus 270 enaI~~w~pg--kl~e------~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la--~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 270 ENAIVCWKPG--KLEE------SIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLA--LGNQSGKVYVWDLDN 338 (385)
T ss_pred CceEEEEecc--hhhh------hhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHh--hccCCCcEEEEECCC
Confidence 1112222110 0000 011000 00000 0001111 344544 45556677777 488899999999974
Q ss_pred eeE-------EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 229 RPI-------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 229 ~~~-------~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
..- +......|...+||-||.+|++.. .+|+|.-||.-
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc---dd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC---DDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEe---CCCcEEEEEee
Confidence 322 222456788899999999998887 66899999964
No 231
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=3e-09 Score=96.31 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=160.1
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-C-cEEEE-ecCCeEEEEeCCCCCCceeeeee-cCCeeEEEEe
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-E-AVACR-MATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVS 99 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~-~~la~-~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~s 99 (434)
..+.|+|||..+|+.+..|.... .....++|..+ + ..+.+ +.||+|++||+............ .++-..+.+.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred cCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 46899999999999999998765 34446677664 2 33444 46889999999875543222222 1212222333
Q ss_pred CC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884 100 KA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 100 p~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
-+ .+..+++- .+..+..+.|.+|++... .+.+.+. .-|..++++++|+|....+++..+.| |-.+|
T Consensus 125 ~nck~~ii~~G-tE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD---------GLvnl 192 (376)
T KOG1188|consen 125 LNCKKNIIACG-TELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD---------GLVNL 192 (376)
T ss_pred ccCcCCeEEec-cccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEeeccc---------ceEEe
Confidence 22 23444432 344567789999999873 3335443 45788999999999998887765543 44445
Q ss_pred EEEeeCCCceeee-ecCCCCCeEEEEECcCC--CEEEEEEccCCCeEEEEecc-ceeEEEcCCcCe---------eE---
Q 013884 178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSG--SEFAVVYGFMPASATIFNKK-CRPILELGSGPY---------NT--- 241 (434)
Q Consensus 178 ~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg--~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~---------~~--- 241 (434)
|.+......+..+ .+.+...|+.+.|..++ +.+++ .. .....+|+++ +.....+....+ ++
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl--TH-~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL--TH-METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE--Ec-cCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 5554433322222 23346679999999988 55554 23 3578889874 222222211100 00
Q ss_pred E-EECC-CCCeEEEEecCCCCCeEEEE-EccCC---EEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 242 V-RWNP-KGKFLCLAGFGNLPGDMAFW-DYVDG---KQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 242 i-~~sP-~g~~l~~~~~~~~~g~i~iw-d~~~~---~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
| ..+| ++..+++++.+...|.+... |..++ +.+..++++ .++ .+.|.-.+.++.||+. |+.+++|
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE------DG~l~~W 343 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE------DGLLQAW 343 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC------CceEEEE
Confidence 1 2334 44566666643322333333 33433 345555553 233 3888889999999999 9999999
Q ss_pred ee
Q 013884 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
..
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 97
No 232
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.19 E-value=3.1e-09 Score=103.39 Aligned_cols=240 Identities=16% Similarity=0.188 Sum_probs=144.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE--EeecCcCCCCCCeeeecCCCc-EEEEe-cCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ--LFQKNMTKTTWPSIRFSSDEA-VACRM-ATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~--~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~i~v~~~ 77 (434)
|..+.|-|....|++.+ .|.++++||+++++++.. +.++ ...+.+++|.+++. .|++| -|++|.|||+
T Consensus 103 ifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH---~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGH---TGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred eEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeeccc---ccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 55677889777888888 899999999999988776 5554 47888999999775 56666 4689999997
Q ss_pred CCCCC---------------c-------eeeeee-----cCCeeE---EEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 78 TDFPK---------------G-------ILYRLR-----VPGVAA---FEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 78 ~~~~~---------------~-------~~~~~~-----~~~v~~---~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
..... . ...+.+ ...|.+ +.+.-| +.+|+. .+..++.|++||+..
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaS----aga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLAS----AGAADSTIKVWDLRK 249 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeee----ccCCCcceEEEeecc
Confidence 42110 0 000000 001221 222223 222221 234588999999975
Q ss_pred CC---CCCceeeeeec-----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe-
Q 013884 128 DL---QSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV- 198 (434)
Q Consensus 128 ~~---~~~~i~~~~~~-----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i- 198 (434)
.. ..++.....++ ....++|.....|++|++-+. |. .||.+++.+.....+.+-....+
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~---------sIy~ynm~s~s~sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DN---------SIYFYNMRSLSISPVAEFSGKLNS 317 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CC---------cEEEEeccccCcCchhhccCcccc
Confidence 21 02223222222 234566777778898866542 32 24555544432222211111111
Q ss_pred ---EEEEECcCCCEEEEEEccCCCeEEEEeccce---e-EEEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013884 199 ---HDVQWSYSGSEFAVVYGFMPASATIFNKKCR---P-ILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 199 ---~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~-~~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~ 270 (434)
..-..+||+..++ +|..|..+++|.+..- + +...|...+++++|.|.-. -+++++ .|..+.||++.+
T Consensus 318 sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS---dD~~~kiW~l~~ 392 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS---DDFRVKIWRLSN 392 (720)
T ss_pred eeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeec---cCcceEEEeccC
Confidence 1245789998888 7999999999988522 1 2233778899999988543 345556 345999999875
Q ss_pred C
Q 013884 271 G 271 (434)
Q Consensus 271 ~ 271 (434)
+
T Consensus 393 ~ 393 (720)
T KOG0321|consen 393 G 393 (720)
T ss_pred c
Confidence 4
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.3e-08 Score=93.76 Aligned_cols=212 Identities=17% Similarity=0.227 Sum_probs=141.3
Q ss_pred CCcEEEEecCCeEEEEeCCCCCC--ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCce
Q 013884 60 DEAVACRMATNEIQFFDTTDFPK--GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPL 134 (434)
Q Consensus 60 d~~~la~~~~~~i~v~~~~~~~~--~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i 134 (434)
||.++.+..+|.+++|....... .....+ ..+++..+.-+|....++| .+|.. ..+.||++.. .+++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva-----~GGke~~n~lkiwdle~---~~qi 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVA-----TGGKENINELKIWDLEQ---SKQI 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEe-----cCchhcccceeeeeccc---ceee
Confidence 77888888889999999875431 111122 2345666666666444444 24444 6788999866 2222
Q ss_pred eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC--CCEEEE
Q 013884 135 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEFAV 212 (434)
Q Consensus 135 ~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd--g~~~av 212 (434)
-+- . |...++| .-++ .--+.++.|-|. ...|+.
T Consensus 187 w~a-----K------NvpnD~L------------------------------~LrV----PvW~tdi~Fl~g~~~~~fat 221 (412)
T KOG3881|consen 187 WSA-----K------NVPNDRL------------------------------GLRV----PVWITDIRFLEGSPNYKFAT 221 (412)
T ss_pred eec-----c------CCCCccc------------------------------ccee----eeeeccceecCCCCCceEEE
Confidence 110 0 1111111 0011 112345667666 667775
Q ss_pred EEccCCCeEEEEecc--ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEE
Q 013884 213 VYGFMPASATIFNKK--CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTS 285 (434)
Q Consensus 213 ~~g~~~~~i~l~d~~--~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~ 285 (434)
+..-+.+++||.+ -.++.+ +...++.++..-|.|++|++|. ..|++..||++.++.+.. +.+- .+..+
T Consensus 222 --~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 222 --ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred --EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCceeeccccCCccCCcceE
Confidence 4445799999986 345544 4688999999999999999887 668999999999988876 4443 56669
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcC
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~ 335 (434)
.-+|.+++|++++. |+-+||+|... +++++... ..+..+..++.
T Consensus 297 h~hp~~~~las~GL------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 297 HCHPTHPVLASCGL------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEcCCCceEEeecc------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999999999999 99999999977 55665433 45666666665
No 234
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.18 E-value=4.1e-09 Score=105.41 Aligned_cols=244 Identities=15% Similarity=0.124 Sum_probs=145.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEe-ecCcCCCCCCeeeecCCC---cEEEEecCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLF-QKNMTKTTWPSIRFSSDE---AVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~-~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~ 75 (434)
|.|+.|+|....|+.++- .+|.|.+||+..+.. ...+. ....|...+..+.|..+. .++..+.||.|..|
T Consensus 245 v~~~~f~p~~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred eeEEEeccCCcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 789999997666665542 689999999987754 21111 112244666688897654 35555579999999
Q ss_pred eCCCCCCcee-----ee-------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---EEcCCC--CCCCceeeee
Q 013884 76 DTTDFPKGIL-----YR-------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---YACGKD--LQSQPLARRS 138 (434)
Q Consensus 76 ~~~~~~~~~~-----~~-------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---~~~~~~--~~~~~i~~~~ 138 (434)
++........ .. -...++..++|.|.....+.+-. ..|.|.- ..+... ...+.+....
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-----e~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-----EEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-----CCcEEEEEeccCCccccccccccccccc
Confidence 9865432110 01 11235778888887443332211 1122221 111110 0012234455
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccC
Q 013884 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~ 217 (434)
.|...+..+.+||=+..+...+ .|-+.+.| .... .......+. ....|++++|||...-+.+ ++.+
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~---gDW~vriW-------s~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~-~~d~ 462 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSV---GDWTVRIW-------SEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFA-TVDG 462 (555)
T ss_pred ccCcceEeeecCCCccceeeee---ccceeEec-------cccC--CCCcchhhhhccceeeeeEEcCcCceEEE-EEcC
Confidence 5677888999999877654432 23333322 2110 111112222 2445999999997654444 5788
Q ss_pred CCeEEEEecc---ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 218 PASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 218 ~~~i~l~d~~---~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+|.+.|||+. ..++.+. +....+.+.|++.|++|++|. ..|++.+|++..
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd---~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD---ANGTTHILKLSE 517 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec---CCCcEEEEEcCc
Confidence 9999999985 3333332 455667899999999999998 678999999863
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.1e-09 Score=102.18 Aligned_cols=271 Identities=14% Similarity=0.170 Sum_probs=163.8
Q ss_pred CcEEEEEcCCCcEEEEEeecC---------------------cCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCCCCC
Q 013884 26 KNVILWKTETGEAVYQLFQKN---------------------MTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTDFPK 82 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~---------------------~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~~~~ 82 (434)
+.|+||+++.|+.+..+.... .....-+.+..||||+||...+. -.|++||+.+.+.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL 86 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL 86 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee
Confidence 568888887776543332200 01133447889999999876643 4999999998775
Q ss_pred ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---------EEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884 83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---------YACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---------~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
.....+..+.|.-.-+|-| -.-+++..- +..|.+ ..+|.+ . ..|+.+.-.
T Consensus 87 KFERhlDae~V~feiLsDD-~SK~v~L~~-----DR~IefHak~G~hy~~RIP~~------------G---RDm~y~~~s 145 (703)
T KOG2321|consen 87 KFERHLDAEVVDFEILSDD-YSKSVFLQN-----DRTIEFHAKYGRHYRTRIPKF------------G---RDMKYHKPS 145 (703)
T ss_pred eeeecccccceeEEEeccc-hhhheEeec-----CceeeehhhcCeeeeeecCcC------------C---ccccccCCC
Confidence 4444444555554444543 111111111 112221 112211 1 123333333
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL 232 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~ 232 (434)
.-|++.++. ..+|.+++..+ .-..++.. .++++.+..++-...|+ +|..++.+.+||.++....
T Consensus 146 cDly~~gsg------------~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla--~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 146 CDLYLVGSG------------SEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA--CGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred ccEEEeecC------------cceEEEEcccc-ccccccccccccceeeeecCccceEE--ecccCceEEEecchhhhhh
Confidence 334443322 13677776554 22334443 48899999999777777 5888999999998754322
Q ss_pred ---Ec------C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC--CCE
Q 013884 233 ---EL------G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD--GRY 293 (434)
Q Consensus 233 ---~~------~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd--g~~ 293 (434)
.. + ...++++.|+.+|-.+++|. ..|.+.|||+.+.+.+..-.+. .+..+.|-+. +..
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 11 1 12388999999999999988 6689999999988766544443 4455899776 334
Q ss_pred EEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEcCCCCCCCC
Q 013884 294 FMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
+++.. ...++|||- +|+.+... +...+..++.-|..-.+|.+
T Consensus 288 v~S~D-------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 288 VVSMD-------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred EEecc-------hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 44432 568999996 66655544 34568888888876665554
No 236
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.1e-09 Score=105.70 Aligned_cols=236 Identities=15% Similarity=0.169 Sum_probs=159.3
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
..+.|...|.+++..|. +..++ +++.+++|+||.+.+ +.++....+- ..+.+++|+|.++.-++.+..+.
T Consensus 395 vyrGHtg~Vr~iSvdp~-G~wla-----sGsdDGtvriWEi~T---gRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPS-GEWLA-----SGSDDGTVRIWEIAT---GRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eEeccCCeEEEEEecCC-cceee-----ecCCCCcEEEEEeec---ceEEEEEeec-ceeEEEEecCCCCceeEEEEecC
Confidence 34566677899999996 45555 578899999999998 7888776654 47889999998876544444332
Q ss_pred cc--cCceeec--------cee---------------EEEEee--CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC
Q 013884 165 DK--TNQSYYG--------ESK---------------LNYLTT--DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 165 d~--~~~~~~g--------~~~---------------l~~l~~--~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~ 217 (434)
.. .+-. .| ... .|.-.. .......+.+.+..+|.++.|+-.|.+|+++.+..
T Consensus 465 ~~~ivnp~-~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 CVLIVNPI-FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred ceEEeCcc-ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 20 0000 11 000 000000 00111234455677899999999999999876643
Q ss_pred C-CeEEEEeccceeE---EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC
Q 013884 218 P-ASATIFNKKCRPI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG 291 (434)
Q Consensus 218 ~-~~i~l~d~~~~~~---~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg 291 (434)
. ..|.|+++..... +....+.+.++.|+|.-.+|+++... .|+|||+...+++..+... .+..++.+|.|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 3 3788888853322 22357889999999999999988743 6999999887665554433 56669999999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc--eeee--eecccceeeEEEcCCCCCCC
Q 013884 292 RYFMTATTAPRLQIDNGIKIFHHNGS--LFFK--KMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 292 ~~l~tas~~~rl~~D~~i~iw~~~g~--~~~~--~~~~~~~~~~w~p~~~~~~~ 341 (434)
..|+.++. |+.+..+|++-. .... .+...+..|.+++.-+.+.+
T Consensus 620 Dnli~gs~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas 667 (733)
T KOG0650|consen 620 DNLILGSY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS 667 (733)
T ss_pred CeEEEecC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Confidence 99999999 999999998533 2222 23456788888887554443
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=110.35 Aligned_cols=130 Identities=20% Similarity=0.487 Sum_probs=98.9
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--c---------------------------eeEE--EcCCcCeeEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--C---------------------------RPIL--ELGSGPYNTVR 243 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~---------------------------~~~~--~~~~~~~~~i~ 243 (434)
...|.++.|-|.+..++++ ...++.+.+||.. + +++. .+..+.+|.++
T Consensus 219 ktsvT~ikWvpg~~~~Fl~-a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLV-AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEE-EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 4688999999976655442 4557788888642 0 1111 12467889999
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee
Q 013884 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF 320 (434)
Q Consensus 244 ~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~ 320 (434)
|||||++||+.+ .||.++|||..+.+++...... ...+++|||||+||+|++. |.-|.||.+..+ ++.
T Consensus 298 FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE------DDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 298 FSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE------DDLVTVWSFEERRVVA 368 (636)
T ss_pred EcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC------cceEEEEEeccceEEE
Confidence 999999999999 6789999999998877666553 6778999999999999999 999999999554 444
Q ss_pred ee--ecccceeeEEEc
Q 013884 321 KK--MFDKLFQAEWKP 334 (434)
Q Consensus 321 ~~--~~~~~~~~~w~p 334 (434)
.. +..=+..|+|.|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 43 445577888876
No 238
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.14 E-value=1.1e-10 Score=112.97 Aligned_cols=108 Identities=20% Similarity=0.456 Sum_probs=87.4
Q ss_pred CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc----------eeEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCe
Q 013884 195 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGD 262 (434)
Q Consensus 195 ~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~----------~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~ 262 (434)
..-|.+++|.| |..++|| +..|+.|.||.+.. +.+.+.|...|.++.|+|-. ..|++++++. +
T Consensus 627 gt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~---T 701 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS---T 701 (1012)
T ss_pred CceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc---e
Confidence 34678999999 7778886 56789999997642 23556688899999999965 5778888554 9
Q ss_pred EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
|++||+.+++....+.+| .+..++|||||+.++|.+. |+.+++|.
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK------Dg~~rVy~ 748 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK------DGTLRVYE 748 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec------CceEEEeC
Confidence 999999999888888887 6677999999999999999 66555554
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.14 E-value=3.8e-10 Score=105.84 Aligned_cols=246 Identities=13% Similarity=0.190 Sum_probs=158.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
..+.|+.+|++|+..+ ..+.|..+|..++.....+... +.+..++|-.+++|+|.+-.+-+.|||...-+.
T Consensus 133 Y~~~ytrnGrhlllgG-----rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGG-----RKGHLAAFDWVTKKLHFEINVM----ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecC-----Cccceeeeecccceeeeeeehh----hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 3578999999999887 5688999999999887777554 667789999999999999999999999765332
Q ss_pred ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884 83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
...+- ...|..+.|-|- ..+++ +.+..+.+.--|+.. ++.++.
T Consensus 204 -HClk~-~~~v~rLeFLPy-HfLL~-----~~~~~G~L~Y~DVS~---GklVa~-------------------------- 246 (545)
T KOG1272|consen 204 -HCLKR-HIRVARLEFLPY-HFLLV-----AASEAGFLKYQDVST---GKLVAS-------------------------- 246 (545)
T ss_pred -eehhh-cCchhhhcccch-hheee-----ecccCCceEEEeech---hhhhHH--------------------------
Confidence 11111 223555555554 11111 111112222222222 111100
Q ss_pred cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCe
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPY 239 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~ 239 (434)
+. ...|.+..+.-+|-.-.+. .|...|.|.+|.-.. +++..+ |.+++
T Consensus 247 ---------------------------~~-t~~G~~~vm~qNP~NaVih--~GhsnGtVSlWSP~skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 247 ---------------------------IR-TGAGRTDVMKQNPYNAVIH--LGHSNGTVSLWSPNSKEPLVKILCHRGPV 296 (545)
T ss_pred ---------------------------HH-ccCCccchhhcCCccceEE--EcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence 00 0145556666666554444 588889999998753 444443 89999
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--c-
Q 013884 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--N- 315 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~--~- 315 (434)
++|++.|+|+|++++| +|..|.|||+++...+.++.. +....+++|--| ++.++. ...+.||.= .
T Consensus 297 ~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~------G~~v~iw~d~~~~ 365 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSY------GDHVQIWKDALKG 365 (545)
T ss_pred ceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCcccccccccc--ceeeec------CCeeeeehhhhcC
Confidence 9999999999999999 455999999998877766655 455568888765 444555 678899963 2
Q ss_pred -C--ceeeeee--cccceeeEEEcC
Q 013884 316 -G--SLFFKKM--FDKLFQAEWKPV 335 (434)
Q Consensus 316 -g--~~~~~~~--~~~~~~~~w~p~ 335 (434)
| +..|..+ ...+-.+.|.|.
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred CCCCCcchhhhccCcccccceeccH
Confidence 1 1222211 135667777775
No 240
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.12 E-value=7.2e-09 Score=93.20 Aligned_cols=228 Identities=11% Similarity=0.149 Sum_probs=145.1
Q ss_pred CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.+.|.+|++|...+|.+-+ ++|+||...... .......|...|+.+.|+|..+.++.+ +.+..-.+|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc------s~drnayVw~~ 84 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC------SHDRNAYVWTQ 84 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc------cCCCCcccccc
Confidence 56679999999999998854 599999986644 223344455678999999986555543 45556688888
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce--eecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w 203 (434)
+....=++...+--++.....+.|+|.++.+++... -+.... |.+++. |-+ ...+.......|.+++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg---ar~isVcy~E~ENd-WWV------sKhikkPirStv~sldW 154 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG---ARLISVCYYEQEND-WWV------SKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccC---ccEEEEEEEecccc-eeh------hhhhCCccccceeeeec
Confidence 543222344444445667789999999998766421 111111 112222 111 11122222578899999
Q ss_pred CcCCCEEEEEEccCCCeEEEEec-----c--------------ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 204 SYSGSEFAVVYGFMPASATIFNK-----K--------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~d~-----~--------------~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
+|++-.++ .|+.|++.++|.. + +..+.++ ..+.+..+.|||+|..|+..+.+ +.
T Consensus 155 hpnnVLla--aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~ 229 (361)
T KOG1523|consen 155 HPNNVLLA--AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---ST 229 (361)
T ss_pred cCCcceec--ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---Cc
Confidence 99998777 6888999999853 1 1112223 35678999999999999999954 59
Q ss_pred EEEEEccCCE-EEEEeeC--CCceEEEECCCCCEEEEEEc
Q 013884 263 MAFWDYVDGK-QLGTTRA--ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 263 i~iwd~~~~~-~i~~~~~--~~~~~~~wspdg~~l~tas~ 299 (434)
+.+-|..... .+..... -....+.|-.+.. ++.|+.
T Consensus 230 v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~ 268 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY 268 (361)
T ss_pred eEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence 9999876553 2222221 2334467765544 444444
No 241
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.12 E-value=2.8e-08 Score=97.47 Aligned_cols=191 Identities=15% Similarity=0.226 Sum_probs=125.0
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
..+....|+|+ ...++++.-+.+ .+..+.++++.. +......+ +........|+|||+.|++....+
T Consensus 193 ~~~~~p~ws~~-~~~~~y~~f~~~-~~~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd------- 259 (425)
T COG0823 193 SLILTPAWSPD-GKKLAYVSFELG-GCPRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD------- 259 (425)
T ss_pred cceeccccCcC-CCceEEEEEecC-CCceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC-------
Confidence 34666789998 444544433322 226788888876 33333333 444556789999999998875433
Q ss_pred eecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccceeEEEc--CCcCeeEEEECC
Q 013884 171 YYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNP 246 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~~~~~--~~~~~~~i~~sP 246 (434)
|...||.++..+..... |.. .+.-..-.|+|||+.+++++..... .|.++|.++.....+ ..+.-..-.|||
T Consensus 260 --g~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 260 --GSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred --CCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence 44568888887765333 332 3444578999999999987543222 677788876654433 333344789999
Q ss_pred CCCeEEEEecCCCCCe--EEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013884 247 KGKFLCLAGFGNLPGD--MAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTA 300 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~--i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~ 300 (434)
||++|+..+.. .|. |.+.|+.++..+..+...... ...|+|+|+.|+..+..
T Consensus 336 dG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 336 DGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 99999988732 344 777787766544444443322 37999999999998874
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=3.2e-08 Score=101.50 Aligned_cols=284 Identities=12% Similarity=0.121 Sum_probs=166.4
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~~ 79 (434)
..+.|+|-...+++.. +...|+|||.+.++.+..|.....-...|..+.+=. |..++.++ .||.|+||+.-.
T Consensus 1068 k~~~~hpf~p~i~~ad-----~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAAD-----DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred ceeeecCCCceeEEcC-----CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3567888888888865 456899999999999888876543334555555532 44555555 678999998533
Q ss_pred CC-CceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC-
Q 013884 80 FP-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR- 151 (434)
Q Consensus 80 ~~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~- 151 (434)
.. ......-...++.+....+.+...+.-|.-.+ .|....|+|||... ...+....+.. .-++.+.-+-
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCCccceeeccccc
Confidence 21 11111111112222222222222222221111 34567899999976 34444333221 1122222222
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--C--CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K--EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~--~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~ 227 (434)
.|+.++.. -.|.+.+ +|....... ++.+..- + ..+|..+.+.+.|-. -+++|+.+|.|.+||++
T Consensus 1220 ~gn~i~AG---faDGsvR-------vyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1220 HGNIIAAG---FADGSVR-------VYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CCceEEEe---ecCCceE-------EeecccCCc-cccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecc
Confidence 24443332 2444444 444333222 2222221 2 234888889887754 23379999999999998
Q ss_pred ceeEEEc-----C--Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------C---CCceEEEECCC
Q 013884 228 CRPILEL-----G--SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------A---ECSVTSEWSPD 290 (434)
Q Consensus 228 ~~~~~~~-----~--~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~---~~~~~~~wspd 290 (434)
......+ + -+ ..+++..+++...+|+|+. +.|.||++... .+..+. + ..+++++|+|-
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~----q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA----QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCCeeeecCc----ceEEEEecChh-hhcccccCcccccCcCCCcceeeecch
Confidence 6432221 1 13 4899999999999999873 58999998643 222211 1 24577999999
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 291 GRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 291 g~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
--.++.|.. |+.|.||..+..
T Consensus 1363 ~~llAaG~~------Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSA------DSTVSIYSCEKP 1383 (1387)
T ss_pred hHhhhhccC------CceEEEeecCCc
Confidence 888888877 999999987543
No 243
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=1.7e-07 Score=86.12 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee-EEEEeCCCC-
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA-AFEVSKAPG- 103 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~- 103 (434)
+.++|.+...+..++.+... ..+.++.+. -+.|+.+-...|.|||+.+...........++.. -+++||+.+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFP----TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred ceEEEEEcccCceEEEEecC----CceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 56888888888877776654 345466664 4455556556699999998765433333222222 345565533
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
.++|+ |++ ...+.|.||++.+ -+++..+..|+....++++|++|..|+.. ++....++.+ .+.
T Consensus 142 ~ylAy--p~s-~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~llATA--SeKGTVIRVf---------~v~ 204 (391)
T KOG2110|consen 142 CYLAY--PGS-TTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGTLLATA--SEKGTVIRVF---------SVP 204 (391)
T ss_pred ceEEe--cCC-CCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCCEEEEe--ccCceEEEEE---------EcC
Confidence 35553 332 3478999999998 78899999999999999999999987543 1111122222 111
Q ss_pred CCceeeeecCC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-CeEEEEecCCC
Q 013884 184 GTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNL 259 (434)
Q Consensus 184 ~~~~~~v~l~~---~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~ 259 (434)
.+ +....+.. ...|++++|+||+.+++. .+...+|.+|-++........ .+ -.|.+-. .+.-.+..-..
T Consensus 205 ~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--sS~TeTVHiFKL~~~~~~~~~-~p---~~~~~~~~~~sk~~~sylp 277 (391)
T KOG2110|consen 205 EG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA--SSNTETVHIFKLEKVSNNPPE-SP---TAGTSWFGKVSKAATSYLP 277 (391)
T ss_pred Cc-cEeeeeeCCceeeEEEEEEECCCCCeEEE--ecCCCeEEEEEecccccCCCC-CC---CCCCcccchhhhhhhhhcc
Confidence 11 12222211 346889999999998885 344569999977543311111 00 0111100 00000000000
Q ss_pred CCeEEEEEccCCEEEEEeeCCCc-eEEEEC--CCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 260 PGDMAFWDYVDGKQLGTTRAECS-VTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~~-~~~~ws--pdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
...-.+||....--...+..... ..+.++ +...++..|+. ||.+.+|.+
T Consensus 278 s~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~------dG~~y~y~l 329 (391)
T KOG2110|consen 278 SQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY------DGHLYSYRL 329 (391)
T ss_pred hhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc------CCeEEEEEc
Confidence 11223355443211122222222 235555 57889999999 999999998
No 244
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.03 E-value=6e-09 Score=93.68 Aligned_cols=153 Identities=16% Similarity=0.289 Sum_probs=111.1
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013884 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL-RKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l-~~~~~i~~~~wspdg~~~av~~g 215 (434)
+....+++.+||+|++.+++.... ..++..+..+.. +..-++ ++...|+.++|+|.+++++ ++
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~------------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--tc 73 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNN------------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--TC 73 (361)
T ss_pred eccCceeeeeecCCCceEEeccCC------------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--Ec
Confidence 355678899999999998876432 123444333331 222233 2578999999999999998 68
Q ss_pred cCCCeEEEEec-c---ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCce
Q 013884 216 FMPASATIFNK-K---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSV 283 (434)
Q Consensus 216 ~~~~~i~l~d~-~---~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~~ 283 (434)
..|...++|.. + ..+...+ +....+++.|+|.+..+++|+... .|.||-.+.. +.|..--...++
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCcccccee
Confidence 88999999977 3 2333333 578889999999999999998554 8888876643 223332233667
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+++|.|.+-.|+++++ |+..||+..
T Consensus 151 sldWhpnnVLlaaGs~------D~k~rVfSa 175 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGST------DGKCRVFSA 175 (361)
T ss_pred eeeccCCcceeccccc------CcceeEEEE
Confidence 7999999999999999 999999975
No 245
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=102.05 Aligned_cols=114 Identities=10% Similarity=0.151 Sum_probs=84.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~ 78 (434)
|.||.|+.||.+|++++ .|-.+.|||....+.++.+... |...+-++.|-| ++++++++ +|..|++||+.
T Consensus 53 VN~LeWn~dG~lL~SGS-----DD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGS-----DDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ecceeecCCCCEEeecC-----CcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 78999999999999988 8999999999988888887665 447777999988 56677777 56799999997
Q ss_pred CCCC----------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 79 DFPK----------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 79 ~~~~----------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.... ......|...|+.++..|++... +|. .+.++.++-|++..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht--fws---asEDGtirQyDiRE 179 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT--FWS---ASEDGTIRQYDIRE 179 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCce--EEE---ecCCcceeeecccC
Confidence 5211 11223345678888888874332 222 24567888888854
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=1.6e-07 Score=88.85 Aligned_cols=133 Identities=11% Similarity=0.166 Sum_probs=96.1
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCe
Q 013884 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH 105 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 105 (434)
.|-|+|..+|+. ..+.. .. ..+.++.-++||++++.+.++ +|.++|+.+.......+-...-|..+.|||+ ...
T Consensus 383 ~l~iyd~~~~e~-kr~e~-~l--g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~ 457 (668)
T COG4946 383 KLGIYDKDGGEV-KRIEK-DL--GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRW 457 (668)
T ss_pred eEEEEecCCceE-EEeeC-Cc--cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-cee
Confidence 788999887764 33322 11 566689999999999988765 9999999986653444455567999999998 678
Q ss_pred EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884 106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
+|+-.|+. --...|++|++.. ..+...+-..+...+.+|.|||++|.++.....|.+..
T Consensus 458 iAYafP~g-y~tq~Iklydm~~----~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~D 516 (668)
T COG4946 458 IAYAFPEG-YYTQSIKLYDMDG----GKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSND 516 (668)
T ss_pred EEEecCcc-eeeeeEEEEecCC----CeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCC
Confidence 88877742 3345789999876 33444444555666788999999999987666655543
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.00 E-value=2.9e-06 Score=76.72 Aligned_cols=227 Identities=11% Similarity=0.174 Sum_probs=130.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEecC--------CeEE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRMAT--------NEIQ 73 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~~~--------~~i~ 73 (434)
.++|..|-.=++.+. |.-.+||+..--++.. .+.... ..+..+-| -.++||..++ |.|.
T Consensus 10 svs~NQD~ScFava~------~~Gfriyn~~P~ke~~~r~~~~~G---~~~veMLf--R~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVAT------DTGFRIYNCDPFKESASRQFIDGG---FKIVEMLF--RSNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred EEEEccCCceEEEEe------cCceEEEecCchhhhhhhccccCc---hhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence 466776666555443 5668899876432211 111111 11112222 3456665432 5899
Q ss_pred EEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 74 FFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
|||-.... ....+. ...|.++.++++ .|++.. +..|.+|..++. -+.++... ..-||.
T Consensus 79 IWDD~k~~--~i~el~f~~~I~~V~l~r~---riVvvl------~~~I~VytF~~n--~k~l~~~e--------t~~NPk 137 (346)
T KOG2111|consen 79 IWDDLKER--CIIELSFNSEIKAVKLRRD---RIVVVL------ENKIYVYTFPDN--PKLLHVIE--------TRSNPK 137 (346)
T ss_pred EEecccCc--EEEEEEeccceeeEEEcCC---eEEEEe------cCeEEEEEcCCC--hhheeeee--------cccCCC
Confidence 99943322 333333 235888888876 233322 347899999842 33333322 122455
Q ss_pred CCeEEEEEEecccccCcee----ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecc
Q 013884 153 STGLLAVAQSDVDKTNQSY----YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK 227 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~----~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~ 227 (434)
| |+.+... ..+..-.+ .|..+|..+.........+--.|+..|.+++.+-+|..+| +++..| -|+|||..
T Consensus 138 G--lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA--TaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 G--LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA--TASTKGTLIRIFDTE 212 (346)
T ss_pred c--eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE--EeccCcEEEEEEEcC
Confidence 5 3222211 11111111 1333444443222211223334688999999999999999 566566 68999985
Q ss_pred -ceeEEEcC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 228 -CRPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 228 -~~~~~~~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+..+.++. ...+.+|+|||++.+||+++ ..|++.|+.++.
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS---dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS---DKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEc---CCCeEEEEEeec
Confidence 66677773 56788999999999999998 668999998764
No 248
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=7e-07 Score=79.84 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=52.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
+.++.+.||+.||... |..|.|=...+. ..+....-.+...-.|+.++||||+.+||.+ +.++|+|||+..
T Consensus 1 W~~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 1 WHLALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred CceeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 3578899999999876 666777665443 3334443333233679999999999999999 568999999865
No 249
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.00 E-value=3.8e-08 Score=86.42 Aligned_cols=262 Identities=13% Similarity=0.137 Sum_probs=159.5
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.++.|-.+++++.....|.|++|.+.........+ .+...|..+..-|+ +... +.|.+..+.+|++..
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~------tqgRd~~L~lw~ia~- 86 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLD------TQGRDPLLILWTIAY- 86 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchh------hcCCCceEEEEEccC-
Confidence 66778889888886665577999999998755434444 22334666665664 1111 245666777888764
Q ss_pred CCCCceeeee--ecccceeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCCceeeee------cCCCCC
Q 013884 129 LQSQPLARRS--FFRCSTVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGP 197 (434)
Q Consensus 129 ~~~~~i~~~~--~~~~~~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~ 197 (434)
..-+...+ .....-|.++..+.++.. +..-+...|. ++..+. +....+. ..+.|.
T Consensus 87 --s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----------~h~~D~--g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 87 --SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----------THKQDG--GDTTQVQIADDSERSKLGS 152 (323)
T ss_pred --cceEEEeeeeccccccccceeccCCCcchhheecCCcccch----------hhhhcc--CccceeEccCchhccccCc
Confidence 22222211 112223344444444422 1111110111 121211 1111221 224677
Q ss_pred eEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEEEc------------CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884 198 VHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 198 i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~~~------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
+.+..|.- ++++|.++.|++++.+.+||+..+ .+.+| |.+++.++.|.+.-..=+.++. +-.+
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga---~dkl 229 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA---DDKL 229 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc---cccc
Confidence 77777553 577888889999999999999653 22222 6788999999875444344443 3367
Q ss_pred EEEEccC--C----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee--eeecccceeeEEEc
Q 013884 264 AFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF--KKMFDKLFQAEWKP 334 (434)
Q Consensus 264 ~iwd~~~--~----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~--~~~~~~~~~~~w~p 334 (434)
..|+++. + ....+++.+++..+..-||++.+|||+- |+.||||++ +++.+. +.+..-+..++|+|
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW------D~RiRVyswrtl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc------CCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence 7777653 3 2334556678888999999999999999 999999999 445443 34567899999999
Q ss_pred CCCCCCCC
Q 013884 335 VSPDKFGD 342 (434)
Q Consensus 335 ~~~~~~~~ 342 (434)
+.+-+..+
T Consensus 304 d~~lmAaa 311 (323)
T KOG0322|consen 304 DCELMAAA 311 (323)
T ss_pred CCchhhhc
Confidence 96555444
No 250
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.2e-08 Score=96.58 Aligned_cols=289 Identities=15% Similarity=0.186 Sum_probs=170.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee---cCCCcEEEEecCCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF---SSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~---S~d~~~la~~~~~~i~v~~~~ 78 (434)
|..|.|...|..|++.+ .|..|.+||...+..+..|... |...+-.-.| +.|...+-++.++++++=.+.
T Consensus 145 VntV~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SG--H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESG--HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cceeeecccCceeeccC-----ccceEEeehhhccCcccccccc--cccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 67789999999999988 8999999999999888777554 3244333334 445555555578888887765
Q ss_pred CCCCce-eee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013884 79 DFPKGI-LYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~-~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~ 152 (434)
.-.... ... -|...|..+++-|+....+. +.+.++.|.-+++....+......+.... .....++-+|.
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~-----S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL-----SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCccc-----ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 432111 111 22334666666666322221 34666777777765533222222222211 13345566666
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeee--ec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK- 227 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l--~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~- 227 (434)
..+.+.+ ...|...+.|.+.. +..-...+...... .+ +..-.|.+++++.++..+.+ .+.|..|+||...
T Consensus 293 nt~~faV--gG~dqf~RvYD~R~-~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 293 NTNEFAV--GGSDQFARVYDQRR-IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM 367 (559)
T ss_pred Ccccccc--CChhhhhhhhcccc-hhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence 5544322 12333333333211 11101111000000 11 12346789999988888875 4556689999532
Q ss_pred --c----------eeEEEcCCcCee-----EE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884 228 --C----------RPILELGSGPYN-----TV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 228 --~----------~~~~~~~~~~~~-----~i-~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
+ ..+...-++.+| .+ .|-|...|+++|+ .-|.|.||+.++++.|..+++. -+.+++=
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS---DCGhIFiW~K~t~eii~~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS---DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP 444 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC---ccceEEEEecchhHHHHHhhcccceEeccCC
Confidence 2 111111122222 22 5899999998876 5699999999999887766653 4445888
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+|--..||+++. |.-||||.-.+
T Consensus 445 HP~~PvLAsSGi------d~DVKIWTP~~ 467 (559)
T KOG1334|consen 445 HPHLPVLASSGI------DHDVKIWTPLT 467 (559)
T ss_pred CCCCchhhccCC------ccceeeecCCc
Confidence 899899999998 99999999744
No 251
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=4.9e-08 Score=88.61 Aligned_cols=240 Identities=12% Similarity=0.114 Sum_probs=143.6
Q ss_pred ceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEE
Q 013884 3 LLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFF 75 (434)
Q Consensus 3 ~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~ 75 (434)
..+.|.- .+.-+.+++ .|+.|++||+.+......+...++......+++-...+.+++++. +-.|.+|
T Consensus 74 N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 74 NGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLW 148 (376)
T ss_pred cceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEE
Confidence 3455654 234455555 799999999988766544443332223444555555788888873 2389999
Q ss_pred eCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884 76 DTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 76 ~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
|+..... .....-|.+.|+.+.|+|.+..+++ ++..++.|.||++....+...+.+.-.+...+..+.|..++
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl-----SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL-----SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEE-----eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 9977553 1233457788999999999666665 46778999999997654344444444456677889999888
Q ss_pred -CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC----------C-CeEEE-EECcCCCEEEEEEccCCCe
Q 013884 154 -TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE----------G-PVHDV-QWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 154 -~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~----------~-~i~~~-~wspdg~~~av~~g~~~~~ 220 (434)
+.|.+++..+ +- .+|.++ .+ ...+.++.. . .-+-+ ..+|.+..++.+.|..-++
T Consensus 224 ykrI~clTH~E---tf-------~~~ele--~~-~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 224 YKRIMCLTHME---TF-------AIYELE--DG-SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK 290 (376)
T ss_pred cceEEEEEccC---ce-------eEEEcc--CC-ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc
Confidence 3465555332 11 133332 21 111222110 0 00011 1235444444444554556
Q ss_pred EEEEecc-------ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 221 ATIFNKK-------CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 221 i~l~d~~-------~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..++-+. ...+..+ |..-+.++.|.-.+.++.+|| .+|.+.+|-.
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG---EDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG---EDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC---CCceEEEEec
Confidence 6665332 1122223 344567888998899999999 8899999975
No 252
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.92 E-value=9.4e-06 Score=77.05 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=135.5
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~ 84 (434)
+|.+||+.|+..+.. ....++.+.|+.+++..+-..+.. .......+|++++.++... +.+|.-.|+.......
T Consensus 42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 589999999987742 235789999999997654333221 2233567899999887764 4689999988865434
Q ss_pred eeeeecCCeeEEEEeCCCCC-eE-EEEecCCC----------------CCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884 85 LYRLRVPGVAAFEVSKAPGS-HV-AVFVPESK----------------GSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~-~i-a~~~~~~~----------------~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
+..+...-+....|+.+.+. .+ .+...... ..+..|...++.+ ++. ...---..-...
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t---G~~-~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT---GER-KVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E-EEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---Cce-eEEEecCccccC
Confidence 44444444444566544333 22 22221111 1122333344433 221 111111111235
Q ss_pred EEECCCCCeEEEEE-EecccccCceeecceeEEEEeeCCCceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCC---eE
Q 013884 147 LNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPA---SA 221 (434)
Q Consensus 147 ~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~-~i~~~~wspdg~~~av~~g~~~~---~i 221 (434)
+.++|....++..+ .+..+... ..||.++.+|.....+.-..++ .+..=-|.|||..+.+......+ -|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd------~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVD------QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-------SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred cccCCCCCCEEEEeccCCcceec------eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 66777555554443 33334433 1378888877654444221122 23344599999998875432222 44
Q ss_pred EEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCC-------------CCCeEEEEEccCCEEEEEeeC--------
Q 013884 222 TIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA-------- 279 (434)
Q Consensus 222 ~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~-------------~~g~i~iwd~~~~~~i~~~~~-------- 279 (434)
.-+|.+......+. .....-+--|+||++++-=|.+. .+-.|++++++.++......+
T Consensus 267 ~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~ 346 (386)
T PF14583_consen 267 AGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD 346 (386)
T ss_dssp EEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred EeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence 55676543322221 22344566789999887544321 012577788887754332222
Q ss_pred -C-Cce--EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 280 -E-CSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 280 -~-~~~--~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+ .+. ...|||||++++..+.. .|...||-
T Consensus 347 ~~~q~~hPhp~FSPDgk~VlF~Sd~-----~G~~~vY~ 379 (386)
T PF14583_consen 347 GDRQVTHPHPSFSPDGKWVLFRSDM-----EGPPAVYL 379 (386)
T ss_dssp TBSSTT----EE-TTSSEEEEEE-T-----TSS-EEEE
T ss_pred CCCccCCCCCccCCCCCEEEEECCC-----CCCccEEE
Confidence 1 122 38999999999999974 55555553
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=3.5e-05 Score=71.22 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=151.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
++-|+|+|++++|.+...+. .++.|.-|.+.. |+.- .+.........-..++.++|++++.++ ..+.|.++.+
T Consensus 42 ptyl~~~~~~~~LY~v~~~~--~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPG--EEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred CceEEECCCCCEEEEEEecC--CcCcEEEEEEcCCCCeEE-EeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence 35689999999999988542 246677776653 6531 111111111222378999999999888 4579999998
Q ss_pred CCCCCc-ee--eeeecC----------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecc
Q 013884 78 TDFPKG-IL--YRLRVP----------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFR 141 (434)
Q Consensus 78 ~~~~~~-~~--~~~~~~----------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~ 141 (434)
...... .. ...+.. .+....+.|+ +.++++-..+ ..+|.+|++... ....... .-.
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG----~Dri~~y~~~dg---~L~~~~~~~v~~G 190 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLG----TDRIFLYDLDDG---KLTPADPAEVKPG 190 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecC----CceEEEEEcccC---ccccccccccCCC
Confidence 653221 11 111222 2666778887 4444432222 247889998752 2111111 223
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeee---c----CCCCCeEEEEECcCCCEEEEE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVP---L----RKEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~---l----~~~~~i~~~~wspdg~~~av~ 213 (434)
+.-..|.|+|+|+.+.++.. .+.+... |.++.. +..+.... + .......++..+|||+++.+.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~E--L~stV~v-------~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNE--LNSTVDV-------LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred CCcceEEEcCCCcEEEEEec--cCCEEEE-------EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 45568999999998766642 3333322 222221 22122211 1 124456789999999988863
Q ss_pred EccCCCeEEEEecc--ceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEE---eeCCC
Q 013884 214 YGFMPASATIFNKK--CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGT---TRAEC 281 (434)
Q Consensus 214 ~g~~~~~i~l~d~~--~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~---~~~~~ 281 (434)
......|.+|.+. +..+... +...-..+.|+|.|++|++++-+. .+|.+|.++ +|++-.. ...+.
T Consensus 262 -NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~~TG~L~~~~~~~~~p~ 338 (346)
T COG2706 262 -NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDKETGRLTLLGRYAVVPE 338 (346)
T ss_pred -cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcCCCceEEecccccCCCC
Confidence 4444488888663 2222211 222235688999999999988654 468887654 6654332 33456
Q ss_pred ceEEEEC
Q 013884 282 SVTSEWS 288 (434)
Q Consensus 282 ~~~~~ws 288 (434)
.+++.|.
T Consensus 339 Pvcv~f~ 345 (346)
T COG2706 339 PVCVKFL 345 (346)
T ss_pred cEEEEEc
Confidence 6666653
No 254
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.88 E-value=2.3e-07 Score=91.03 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=115.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--C--eEEEEeCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTT 78 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~ 78 (434)
..-.|||+|..|+..+-..+. -..+.++|+.+|+.......... .. .++|||||+.|+.... + .|.++|+.
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~--~~--~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGN--NG--APAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCc--cC--CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 345689999998877532111 15799999998865443332211 22 5799999999998743 3 45555544
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.... .++ +-..+..+.-.|+|||++|++
T Consensus 271 ~~~~---~~L-------------------------------------------------t~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 271 GKNL---PRL-------------------------------------------------TNGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred CCcc---eec-------------------------------------------------ccCCccccCccCCCCCCEEEE
Confidence 3220 000 000111124568999999888
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe--EEEEecccee-EEEcC
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS--ATIFNKKCRP-ILELG 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~--i~l~d~~~~~-~~~~~ 235 (434)
.. |.. |...+|.++..+....+++....+.. ...|||||+++++.. ...+. +.++|+.... +..+.
T Consensus 299 ~S----dr~-----G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 299 TS----DRG-----GRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred Ee----CCC-----CCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence 73 333 33368888888876666666533333 788999999999975 33444 6666664333 44443
Q ss_pred -CcCeeEEEECCCCCeEEEEec
Q 013884 236 -SGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 236 -~~~~~~i~~sP~g~~l~~~~~ 256 (434)
......-.|.|+|+.+...+.
T Consensus 368 ~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 368 STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccccCCCCCcCCCCceEEEecc
Confidence 333446789999998887654
No 255
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=2.4e-06 Score=91.82 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=145.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEE----EcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILW----KTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iW----d~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|.++.|=++..-|+.+. .+|.|.+. +..+. +.+.++. .++.+++||||+.+|+... +++|.+
T Consensus 78 ivs~~yl~d~~~l~~~~-----~~Gdi~~~~~~~~~~~~~~E~VG~vd------~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 78 IVSFQYLADSESLCIAL-----ASGDIILVREDPDPDEDEIEIVGSVD------SGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred EEEEEeccCCCcEEEEE-----CCceEEEEEccCCCCCceeEEEEEEc------CcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 44556666666555555 56778777 44433 3334332 5677999999999999885 457766
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEE-E-ecC-----CCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAV-F-VPE-----SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~-~-~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.. .+++......++.+... .+..+.+ | ..+ +.|..+.-.+- -|... .......+ .....+.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~-------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~-~p~~~-~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG-------ESKHVSVGWGKKETQFHGSAGKAAARQLR-DPTVP-KVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC-------CCceeeeccCcccCccCcchhhhhhhhcc-CCCCC-ccccCccc-cCCCceEE
Confidence 64 44443222222211100 0111111 1 000 11111000000 00000 00112233 45567899
Q ss_pred EECCCCCeEEEEEEeccc---ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEE
Q 013884 148 NWNRGSTGLLAVAQSDVD---KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATI 223 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d---~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l 223 (434)
+|-.||.++++..-.... ...+.|.-+..|... - -...|--..++|.|.|+.+|.+....+ ..|.+
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~st---------S-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQST---------S-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCCceEEec---------c-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 999999998776432111 222222221111110 0 011344467999999999997544222 26778
Q ss_pred EeccceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC-CceEEEECCCCC
Q 013884 224 FNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE-CSVTSEWSPDGR 292 (434)
Q Consensus 224 ~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~-~~~~~~wspdg~ 292 (434)
|.-+|-.-.+| ....+..+.||+|+..||+.-.+ .|.+|-+.++. ..-.+... ....+.|+|...
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 87665443333 24578999999999999996532 59999999874 22233332 334499999644
Q ss_pred -EEEEEEcCCceeeCCcEEEEee
Q 013884 293 -YFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 293 -~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.|...+. ++.+.++++
T Consensus 362 ~~L~v~t~------~g~~~~~~~ 378 (928)
T PF04762_consen 362 LRLHVLTS------NGQYEIYDF 378 (928)
T ss_pred CEEEEEec------CCcEEEEEE
Confidence 4566665 566665554
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.2e-06 Score=84.83 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=146.5
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~ 81 (434)
+.|..||||+||+..+. .-..|++||+.+-.. .|.-+- ..+.+...-.|.|=+-++.. .|.+|.+.....
T Consensus 55 t~ik~s~DGqY~lAtG~----YKP~ikvydlanLSL--KFERhl-Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G-- 125 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGT----YKPQIKVYDLANLSL--KFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-- 125 (703)
T ss_pred ceeEecCCCcEEEEecc----cCCceEEEEccccee--eeeecc-cccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence 46789999999987663 457899999986543 222221 12444333445565555554 455776654322
Q ss_pred CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
....++++. -.++.++--... +|.. +....|.-+++.. +.-+.....-......+..|+-...|++.+
T Consensus 126 --~hy~~RIP~~GRDm~y~~~scD---ly~~---gsg~evYRlNLEq---GrfL~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 126 --RHYRTRIPKFGRDMKYHKPSCD---LYLV---GSGSEVYRLNLEQ---GRFLNPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred --eeeeeecCcCCccccccCCCcc---EEEe---ecCcceEEEEccc---cccccccccccccceeeeecCccceEEecc
Confidence 223333331 122222211111 1111 1122344444544 333333222234445566666555443322
Q ss_pred EecccccCceeecce--eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---
Q 013884 161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--- 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~--- 234 (434)
.+.....|.... .+-.++....-....-.+..-.|+++.|+-||-.++| |...|.+.|||++.. ++..-
T Consensus 195 ---~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 195 ---EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred ---cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCceeecccC
Confidence 222222222110 0111111111000000011235899999999988885 888899999999743 33322
Q ss_pred CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884 235 GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
..-++..+.|.+.+. .|++.. ...++|||-.+++.+..++-. .+..+++-|++-+|++|-.
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CccceeeecccccCCCceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 367899999988744 444432 257999999999988877643 5666899999999999987
No 257
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.80 E-value=2.4e-05 Score=84.29 Aligned_cols=289 Identities=17% Similarity=0.256 Sum_probs=159.9
Q ss_pred eEEecCCCcEEEEEecCCCC-CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTP-QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTT 78 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~-~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~ 78 (434)
.|+|=.||.|+|+-+..... .-+.++||+ ..|+. .+....-. .--.+++|.|.|+++|+... ..|.+|+-+
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L-~stSE~v~--gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGEL-QSTSEPVD--GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceE-EeccccCC--CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 57888999999987642222 247899999 44764 33222211 22237899999999998732 489999976
Q ss_pred CCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeeeecc-cceeEEEECC
Q 013884 79 DFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRSFFR-CSTVQLNWNR 151 (434)
Q Consensus 79 ~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~~~~-~~~~~~~ws~ 151 (434)
....+ ...++ ...|..+.|+++ ...+|++..+ .|++|...++. .++.+ .+.. .....+.|+|
T Consensus 290 GLrhg-eF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~------~vqLWt~~NYHWYLKqei---~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 290 GLRHG-EFTLRFDPEEEKVIELAWNSD-SEILAVWLED------RVQLWTRSNYHWYLKQEI---RFSSSESVNFVKWDP 358 (928)
T ss_pred CcEee-eEecCCCCCCceeeEEEECCC-CCEEEEEecC------CceEEEeeCCEEEEEEEE---EccCCCCCCceEECC
Confidence 64432 23333 236899999999 7888887743 29999988742 01111 1111 1223488998
Q ss_pred CCCe-EEEEEEecccccCcee-----ecc------eeEEEEeeCCCceeeee--------------cCCCCCeEEEEECc
Q 013884 152 GSTG-LLAVAQSDVDKTNQSY-----YGE------SKLNYLTTDGTHEGLVP--------------LRKEGPVHDVQWSY 205 (434)
Q Consensus 152 ~G~~-l~~~~~~~~d~~~~~~-----~g~------~~l~~l~~~~~~~~~v~--------------l~~~~~i~~~~wsp 205 (434)
.... |.+++..+. .....| .+. .. ...-++|..-...+ +.-+.+|.+++|++
T Consensus 359 e~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g-~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~ 436 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNG-TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP 436 (928)
T ss_pred CCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCce-EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence 6443 333332110 000000 000 00 01112232211111 22367899999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccceeE-----------E----------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884 206 SGSEFAVVYGFMPASATIFNKKCRPI-----------L----------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~~~~-----------~----------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~ 264 (434)
++..+++++. ++.+.+|....... . .........+.|..+..++++...+.....+.
T Consensus 437 ~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 437 SNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred CCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9988887654 66788886421110 0 01233456788888777777766542346888
Q ss_pred EEEccCCE---EEEEee-CCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 265 FWDYVDGK---QLGTTR-AECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 265 iwd~~~~~---~i~~~~-~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+++....+ .+.... ...... +...++...++.-+. ||.+...+..+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~------~G~v~~~~~~~~ 566 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTN------DGKVFQLSSDGE 566 (928)
T ss_pred EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEEC------CCEEEEeecCCC
Confidence 88874331 222222 222222 555555554555555 666665555444
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=7.7e-06 Score=89.58 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=76.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE--------------EcCC--c--------CeeEEEECCCCCeEE
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS--G--------PYNTVRWNPKGKFLC 252 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~--------------~~~~--~--------~~~~i~~sP~g~~l~ 252 (434)
..+.++++|+|+.+.++ ...+++|++||++..... .++. + .-..++++|+|++++
T Consensus 741 ~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 34679999999977764 556789999998643211 1110 0 124789999998554
Q ss_pred EEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 253 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+ ..+| +.|.+||..++........ ..+..+++++||+.+++-+. ++.|++||....
T Consensus 820 A-Ds~N--~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 820 A-DSYN--HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred E-ECCC--CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 4 4333 7999999988765533211 13456899999997776666 899999999664
Q ss_pred e
Q 013884 318 L 318 (434)
Q Consensus 318 ~ 318 (434)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 259
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=5e-07 Score=93.04 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=142.1
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEc-CC----CcEEEEEeecCcC-----CCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKT-ET----GEAVYQLFQKNMT-----KTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~-~~----g~~~~~~~~~~~~-----~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|-..|+|++ .|+.|+||+- .+ -+.+..+..-+.. ..+. -+.|-....+|.+.+ -..|+|||..
T Consensus 1122 D~aLlLtas-----~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1122 DDALLLTAS-----SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred chhheeeec-----cCceEEEecccccccCCceeEEeeccccccCccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecc
Confidence 345666777 8999999964 22 2445544332210 1222 568887655555554 5799999987
Q ss_pred CCCCceeeeeecC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEEECCCC
Q 013884 79 DFPKGILYRLRVP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGS 153 (434)
Q Consensus 79 ~~~~~~~~~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~ws~~G 153 (434)
.... ...+... .+++++-+-..+..++. +-.+|.|++||.....+...+....-|... ++.+.+++.|
T Consensus 1196 ~E~~--~~diP~~s~t~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 KEQV--VADIPYGSSTLVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ccee--EeecccCCCccceeecccccCCceEEE-----eecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 6432 2222222 34443322222344442 346689999998664334566666666666 7888888877
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCC-CceeeeecCC----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLRK----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~l~~----~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
-.-++.++++ |+ +++++... ..+..+++.. .+..+++..++....+| +|+. ..|.||++.+
T Consensus 1269 ~~elvSgs~~---------G~--I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA--sGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQD---------GD--IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA--SGSA-QLIKIYSLSG 1334 (1387)
T ss_pred CcceeeeccC---------Ce--EEEEecccCcccccceeeeccccCccceeeeeccCCCeee--ecCc-ceEEEEecCh
Confidence 6644444332 33 33444333 2223333322 22488999999998888 6765 7999999987
Q ss_pred eeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 229 RPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 229 ~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
+++..+ ..+.+.|++|+|.--++|+|..| ..|.||...+.
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D---s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD---STVSIYSCEKP 1383 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC---ceEEEeecCCc
Confidence 765543 24667899999998888877644 49999976543
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=3.2e-07 Score=82.46 Aligned_cols=273 Identities=11% Similarity=0.164 Sum_probs=154.3
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-E----EEEEeecCcC---------CCCCCeeeecCCCc---E
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-A----VYQLFQKNMT---------KTTWPSIRFSSDEA---V 63 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~----~~~~~~~~~~---------~~~~~~~~~S~d~~---~ 63 (434)
+|+++.|-..|.||+|+. ..+.|.++.-+.-. | ...|+.+... .+.+..+.|-.++. +
T Consensus 28 ~ItaVefd~tg~YlatGD-----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 28 KITAVEFDETGLYLATGD-----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred eeeEEEeccccceEeecC-----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 488999999999999976 56888888643321 1 1123322210 13455778877653 6
Q ss_pred EEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----ee-
Q 013884 64 ACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RR- 137 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~- 137 (434)
|++..+.+|++|.+-......+.. .+...---+|-+++... +..+++=++... ...++ ..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~---nnls~~~~~~~~g~~~s---------~~~l~lprls~h--d~iiaa~p~rvya 168 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAE---NNLSDSFHSPMGGPLTS---------TKELLLPRLSEH--DEIIAAKPCRVYA 168 (460)
T ss_pred EEecCCceeeeeeeecccchhhhc---cccccccccccCCCcCC---------HHHhhccccccc--ceEEEeccceecc
Confidence 676778899999986533211111 11111111222111110 011111111110 00111 11
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC------CCCeEEEEECcCCCEEE
Q 013884 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFA 211 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~~a 211 (434)
..|...+.++.++.|...++.. .|.. .+||.+++..+.-.++.+.. ...|++..|+|....+.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa----DdLr-------INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA----DDLR-------INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred ccceeEeeeeeecCchheeeec----ccee-------eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 2344556678888887765432 1111 23555554333333333321 24678899999654433
Q ss_pred EEEccCCCeEEEEeccceeE-------EEc------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013884 212 VVYGFMPASATIFNKKCRPI-------LEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 271 (434)
Q Consensus 212 v~~g~~~~~i~l~d~~~~~~-------~~~------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~- 271 (434)
. |.+..|.|.+-|++...+ +.. -...+..+.|||+|++|++-.+- ++.|||++..
T Consensus 238 m-YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~k 312 (460)
T COG5170 238 M-YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMAK 312 (460)
T ss_pred E-EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEeccccc
Confidence 3 566678999999873221 111 12456779999999999876543 7999998754
Q ss_pred EEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 272 KQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 272 ~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.++.++.-| .+ ..+.||-|..++++|+. .|.+-|+-.
T Consensus 313 ~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy------~NNfgiyp~ 366 (460)
T COG5170 313 NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY------SNNFGIYPT 366 (460)
T ss_pred CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc------ccceeeecc
Confidence 455555322 22 23899999999999999 888888764
No 261
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.71 E-value=3.6e-06 Score=88.22 Aligned_cols=257 Identities=15% Similarity=0.215 Sum_probs=140.3
Q ss_pred EEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc-eee--ee--e--cCCeeEEEEeCC
Q 013884 31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG-ILY--RL--R--VPGVAAFEVSKA 101 (434)
Q Consensus 31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~-~~~--~~--~--~~~v~~~~~sp~ 101 (434)
|+. .|..+..+..++ ..+..++-+++ +.++++++ ||+|++|+....... ... .+ + ...+..+...+.
T Consensus 1034 W~p-~G~lVAhL~Ehs---~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHS---SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCc-cceEeehhhhcc---ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 663 466776665544 33335666654 49999995 579999998654321 111 11 1 123444444444
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCce----eeeeecc-cceeEE-EECC-CCCeEEEEEEecccccCceeecc
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPL----ARRSFFR-CSTVQL-NWNR-GSTGLLAVAQSDVDKTNQSYYGE 174 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i----~~~~~~~-~~~~~~-~ws~-~G~~l~~~~~~~~d~~~~~~~g~ 174 (434)
+..+|+ ++.+|.|++.++......... ......+ ...+.| .+.. .+..+++. .+. . +
T Consensus 1110 -~~~~Av-----~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~--~------~- 1173 (1431)
T KOG1240|consen 1110 -GDQFAV-----STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATD--L------S- 1173 (1431)
T ss_pred -CCeEEE-----EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEe--c------c-
Confidence 344444 256788999888752111111 1111111 111222 1111 22212211 110 0 1
Q ss_pred eeEEEEeeCCCcee-eeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECC--
Q 013884 175 SKLNYLTTDGTHEG-LVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNP-- 246 (434)
Q Consensus 175 ~~l~~l~~~~~~~~-~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP-- 246 (434)
.+..+++...+.. +... ...|.|.+++.+|-+..+++ |..-|.+.+||++.+ ++.+. +..+++.+...|
T Consensus 1174 -~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi--Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1174 -RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI--GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred -ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE--ecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence 1233332221110 0111 12689999999999998884 888899999999954 44444 245555555444
Q ss_pred -CCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C--------------------ceEEEECCCCCEEEEEEcCCce
Q 013884 247 -KGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C--------------------SVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 247 -~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~--------------------~~~~~wspdg~~l~tas~~~rl 303 (434)
....+++++. ++ +.|.+|++.++.+-..+-.. . ...+.+.--+.+++++++
T Consensus 1251 ~~~S~~vs~~~~~~--nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs---- 1324 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSN--NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS---- 1324 (1431)
T ss_pred CCCceEEEecccCC--CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----
Confidence 4457777776 44 79999999988433332211 1 112344444668888888
Q ss_pred eeCCcEEEEeecCce
Q 013884 304 QIDNGIKIFHHNGSL 318 (434)
Q Consensus 304 ~~D~~i~iw~~~g~~ 318 (434)
|..|+.||...-.
T Consensus 1325 --d~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1325 --DMKIRKWDPTRPE 1337 (1431)
T ss_pred --ccceeeccCCCcc
Confidence 9999999986543
No 262
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.68 E-value=2.6e-05 Score=75.65 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=144.1
Q ss_pred cCCCcEEEEe----------cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 58 SSDEAVACRM----------ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 58 S~d~~~la~~----------~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
|||+++++.. ..+.+.|||+..... .........+....|||+ +..+++... ..|.+.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-~~l~~~~~~~~~~~~sP~-g~~~~~v~~------~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-TPLTPPPPKLQDAKWSPD-GKYIAFVRD------NNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-EESS-EETTBSEEEE-SS-STEEEEEET------TEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-EECcCCccccccceeecC-CCeeEEEec------CceEEEECCC
Confidence 6889888873 235889999988432 111112456889999999 566654332 3566666544
Q ss_pred CCCCCceeeeeecc------------------cceeEEEECCCCCeEEEEEEecccccC----------------cee-e
Q 013884 128 DLQSQPLARRSFFR------------------CSTVQLNWNRGSTGLLAVAQSDVDKTN----------------QSY-Y 172 (434)
Q Consensus 128 ~~~~~~i~~~~~~~------------------~~~~~~~ws~~G~~l~~~~~~~~d~~~----------------~~~-~ 172 (434)
+ ...+++... .....+-|||||++|+++.-.+..... ..+ |
T Consensus 73 ---~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y 148 (353)
T PF00930_consen 73 ---G-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY 148 (353)
T ss_dssp ---S-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred ---C-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence 2 222222211 123568899999999887543321100 000 0
Q ss_pred -------cceeEEEEeeCCCceeeeecC-----CCCCeEEEEECcCCCEEEEEEccCCC---eEEEEeccc---eeEEEc
Q 013884 173 -------GESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVYGFMPA---SATIFNKKC---RPILEL 234 (434)
Q Consensus 173 -------g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wspdg~~~av~~g~~~~---~i~l~d~~~---~~~~~~ 234 (434)
....|+.+++.++....+.+. ....+..+.|+++++.|++..-.... .+.++|... ..+...
T Consensus 149 Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 149 PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp -BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 223456666655543333322 35567899999999967765444333 455667642 222222
Q ss_pred -CCcCe---eEEEEC-CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-ceE-EEECCCCCEEEEEEcCCceeeCC
Q 013884 235 -GSGPY---NTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-SVT-SEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 -~~~~~---~~i~~s-P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~~~-~~wspdg~~l~tas~~~rl~~D~ 307 (434)
..+.+ ..+.|. ++|..++.....+.-..|+++|...+.......+.. +.. +.|+++++.|...+.... ..
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~---p~ 305 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN---PG 305 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG---TT
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC---CC
Confidence 22222 345554 777755554433223467778888877555555543 333 899999998876665311 12
Q ss_pred cEEEEee--c-Cceeeeeeccc--ceeeEEEcCCCCCC
Q 013884 308 GIKIFHH--N-GSLFFKKMFDK--LFQAEWKPVSPDKF 340 (434)
Q Consensus 308 ~i~iw~~--~-g~~~~~~~~~~--~~~~~w~p~~~~~~ 340 (434)
.-.||.+ . +..+....... -+.+.++|++..++
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 3445544 5 44444443321 26899999876544
No 263
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3.9e-07 Score=87.93 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=142.7
Q ss_pred CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC---C-----CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013884 49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF---P-----KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS 119 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~---~-----~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~ 119 (434)
...++.++|-+-+-.|+++ .++.|.+|++... . .....+.|...|-++.+++.+...+ ++|.++.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y------sgg~Dg~ 367 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY------SGGIDGT 367 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE------eeccCce
Confidence 3566678888888888888 5789999999321 1 0111223333455555555422211 3688999
Q ss_pred EEEEEcCCCC-------CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884 120 VQIYACGKDL-------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 120 v~i~~~~~~~-------~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
|+.|++|... +......+.+|...+..+.++..-..|+.+ +.|.+.+.| ...+...+.+..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w---------~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLW---------EPTEESPCTFGE 435 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEee---------ccCCcCccccCC
Confidence 9999987310 011112344566666677888877775443 344444433 222221122222
Q ss_pred CC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc---------CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013884 193 RK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 193 ~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g 261 (434)
.+ .+.-..+.+--..-...+ +.+.-+...+++.+... +..+ ....+|.+.+.|.+.+.+.+. .++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~ 511 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDR 511 (577)
T ss_pred ccccCCcceEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCC
Confidence 22 222234444322111121 12212222333333221 1111 124578899999998888777 668
Q ss_pred eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.|+++|..+++.+....+| .++.+++.|.|-+|++++. |+.+++|...-+.
T Consensus 512 ~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 512 SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVKT 564 (577)
T ss_pred ceecccccccccchheeeccceecceeecCCCceEEeecC------Cceeehhhccchh
Confidence 9999999999998888777 5556999999999999999 9999999985543
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=4.5e-06 Score=81.24 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=89.3
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+.++|..+.|+.+-..|. ++..+.++-.|+.+...+. .+ ....+.+++++|||+.+++|+ ++|.+||+++
T Consensus 101 h~~~v~~~~~~~~~~ciy--S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~ 173 (541)
T KOG4547|consen 101 HYGNVNEILDAQRLGCIY--SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET 173 (541)
T ss_pred CCCcceeeecccccCceE--ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC
Confidence 588999999998877777 5666789999998654433 33 466778999999999999987 5899999999
Q ss_pred CEEEEEeeCC--CceEEEECCC-----CCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 271 GKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspd-----g~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
++.+.+|.+| .+.+++|--+ |.||++.... +..+.+|-..+
T Consensus 174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~-----~r~i~~w~v~~ 221 (541)
T KOG4547|consen 174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA-----ERGITVWVVEK 221 (541)
T ss_pred ceEEEEecCCCcceEEEEEEEeccccccceeeecccc-----ccceeEEEEEc
Confidence 9999999998 3344777766 8888887664 78888898755
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=3e-05 Score=81.65 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=140.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.++.|--+++-|+... .++.|.+-|.++... .+.+. -..++.+.+||||++.|+...+....++...++.
T Consensus 71 i~s~~fl~d~~~i~v~~-----~~G~iilvd~et~~~--eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVIT-----ALGDIILVDPETLEL--EIVGN--VDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred eEEEEEecccceEEEEe-----cCCcEEEEcccccce--eeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 45667777777776666 678888888877643 22221 1156668999999999999887666666666655
Q ss_pred CceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 82 KGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 82 ~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
......++.+ ....+-|--.. ..+ . |..++....+.... .+.+... -.....+++.|--||.++
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke-Tqf----r---gs~gr~~~~~~~~~--ek~~~~~-~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE-TQF----R---GSEGRQAARQKIEK--EKALEQI-EQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred chhccccccccccccccceecccccc-eee----e---cchhhhcccccccc--cccccch-hhccCCceEEEccCCcEE
Confidence 4333333221 11222221110 000 0 00011000000000 0000001 012345689999999998
Q ss_pred EEEEEec-cc-ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEE
Q 013884 157 LAVAQSD-VD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILE 233 (434)
Q Consensus 157 ~~~~~~~-~d-~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~ 233 (434)
++..-.. .+ +..+.|.. .|.. ..+.-...+-=++++|-|.|..++.+.... +..|.+|.-++-.-.+
T Consensus 211 AVs~~~~~~~~RkirV~dr---------Eg~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDR---------EGAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred EEEEEeccCCceeEEEecc---------cchh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 7743221 12 22333322 2211 111111245557899999999999875443 3369999765433222
Q ss_pred c------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE--EEeeCCCceEEEECCCCC
Q 013884 234 L------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL--GTTRAECSVTSEWSPDGR 292 (434)
Q Consensus 234 ~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i--~~~~~~~~~~~~wspdg~ 292 (434)
| ....++.++|+.++..|++-........|++|-+.++.-. ..+.-+....+.|+|.-.
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~ 347 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTE 347 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCc
Confidence 2 2445899999999999998433213346999999887422 222222333378888543
No 266
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=6.7e-05 Score=69.27 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=134.5
Q ss_pred eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013884 4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMAT------NEIQFF 75 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~------~~i~v~ 75 (434)
.++.+| ++..++...|| -.-+.+||..+|+.+..+..... |-.. .-.||+||++|.+..+ +.|-||
T Consensus 9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 578899 45555555554 24588999999998776644321 1111 3479999999998732 589999
Q ss_pred eCC-CCCCceeeeeecC--CeeEEEEeCCCCCeEEEEe------cCCCC-------CCceEEEEEcCCCCCCCceeeeee
Q 013884 76 DTT-DFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFV------PESKG-------SPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 76 ~~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~------~~~~~-------~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
|.. .+.. ...+... +-..+.+.|++ ..+++-. |+++. ....+...+..+ +..+.+..+
T Consensus 83 d~~~~~~r--i~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s---G~ll~q~~L 156 (305)
T PF07433_consen 83 DAARGYRR--IGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS---GALLEQVEL 156 (305)
T ss_pred ECcCCcEE--EeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCC---Cceeeeeec
Confidence 998 3222 2223323 34578889984 4444432 22211 112333344444 555555333
Q ss_pred ----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC------CCCCeEEEEECcCCCE
Q 013884 140 ----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSE 209 (434)
Q Consensus 140 ----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~~~wspdg~~ 209 (434)
++.++..|.|+++|..++.+ +...+.... ..-+.... .+..-..+... -.+.|-+|+++++|..
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~----~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAM-QYQGDPGDA----PPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred CccccccceeeEEecCCCcEEEEE-ecCCCCCcc----CCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 66778889999999864332 222221110 01112221 11111111111 1578999999999999
Q ss_pred EEEEEccCCCeEEEEeccceeEE-EcCCcCeeEEEECCCCCeEEEEec
Q 013884 210 FAVVYGFMPASATIFNKKCRPIL-ELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~~~~~~-~~~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
+++ ++-..+.+.+||.....+. ...-..+..++-.+++ ++++.|.
T Consensus 231 ia~-tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 231 IAV-TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEE-ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCC
Confidence 987 5666779999998755444 3344455566666766 6666653
No 267
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1e-06 Score=81.43 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------c-eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~------~-~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
.+.|.|+++.||.++++|+ +|..|..+.+|++. . +++... |...|-++.|.-..++|.+|+ ..|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~--SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA--SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEe--ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccce
Confidence 3479999999999988888 78889999999874 2 344333 457788999999999999888 5679
Q ss_pred EEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-----eeeeee-cccceeeEE
Q 013884 263 MAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKKM-FDKLFQAEW 332 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-----~~~~~~-~~~~~~~~w 332 (434)
|.+.|+++.+.+..+.+. .+..+.-+|....|++.+. ++-|.|||.... ++.-.+ ...++.+.|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~------~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR------AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEec------CceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 999999999988887664 4556999999999999998 999999998443 322223 357999999
Q ss_pred EcCCCCCCCC
Q 013884 333 KPVSPDKFGD 342 (434)
Q Consensus 333 ~p~~~~~~~~ 342 (434)
+|..|.|+..
T Consensus 203 ~P~~P~Li~~ 212 (609)
T KOG4227|consen 203 HPETPALILV 212 (609)
T ss_pred cCCCceeEEe
Confidence 9988877643
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=5.7e-06 Score=82.17 Aligned_cols=237 Identities=17% Similarity=0.208 Sum_probs=136.3
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
.|.+++|.-||+.++..- +|++|.|=.+. |..+..-..+. .....+.||+|.+.+... .++++++||...
T Consensus 117 vV~SmsWn~dG~kIcIvY-----eDGavIVGsvd-GNRIwgKeLkg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVY-----EDGAVIVGSVD-GNRIWGKELKG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred EEEEEEEcCCCcEEEEEE-----ccCCEEEEeec-cceecchhcch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 377899999999998877 78998886654 44443222222 112257999999888776 568999999754
Q ss_pred -CCCc------eeeeee----cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884 80 -FPKG------ILYRLR----VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 80 -~~~~------~~~~~~----~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
|... ...+.. ...|..+.|..+. .+.+++... .+.++|+.-.+. ..|+..-+.
T Consensus 188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-----nGr~QiMR~eND--~~Pvv~dtg-- 258 (1189)
T KOG2041|consen 188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-----NGRMQIMRSEND--PEPVVVDTG-- 258 (1189)
T ss_pred cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc-----CceehhhhhcCC--CCCeEEecc--
Confidence 2110 000000 1124445554321 234443322 246777776653 344443333
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
..++..+||++|..|+++. .+.|.... ...+.++++...|..-..+.++ ...|..++|...|-++|+.. ++.|
T Consensus 259 m~~vgakWnh~G~vLAvcG-~~~da~~~--~d~n~v~Fysp~G~i~gtlkvp-g~~It~lsWEg~gLriA~Av---dsfi 331 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCG-NDSDADEP--TDSNKVHFYSPYGHIVGTLKVP-GSCITGLSWEGTGLRIAIAV---DSFI 331 (1189)
T ss_pred cEeecceecCCCcEEEEcc-CcccccCc--cccceEEEeccchhheEEEecC-CceeeeeEEcCCceEEEEEe---cceE
Confidence 4567889999999887753 22222221 1223467777667655555444 46899999999998888743 4567
Q ss_pred EEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 222 TIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 222 ~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.+=+++.+-..-.- -+++.|--.+ .+....-|.|||..+.+
T Consensus 332 yfanIRP~ykWgy~---e~TvVy~y~~-------~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYI---EETVVYVYQK-------EELPQYGIMFWDTKTNE 372 (1189)
T ss_pred EEEeecccceEEEe---eeEEEEEEcc-------CCCcceEEEEEecccCh
Confidence 76666543222110 1222222222 12134569999988764
No 269
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.48 E-value=3.1e-07 Score=92.29 Aligned_cols=257 Identities=11% Similarity=0.083 Sum_probs=164.7
Q ss_pred CCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 49 KTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
...|-|..|-..|.++.+++|+ -++||.+.+..+....+.|...|++++.+-. +.++| ....+..|++|.++.
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~ia-----aaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIA-----AASNDKVIRVWRLPD 263 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhh-----hcccCceEEEEecCC
Confidence 3445588899999999999876 8999998887666666777778888888765 34444 234556799999999
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg 207 (434)
+.++..+..|.+.++.+.|+|-- ++..|.+-..|... ++..---..........-+-++.|..++
T Consensus 264 ---~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r-----~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 264 ---GAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDAR-----LEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred ---CchHHHHhccccceeeeccCccc-------cCCCCCceEecccc-----ccccccCCCCCCcccccceeeeeccccc
Confidence 89999999999999999999843 22233333322211 0000000000111123455677787788
Q ss_pred CEEEEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013884 208 SEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT 284 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~ 284 (434)
..|+ +|..++....|...+..-++ ....-+.++.|- .+.+++-++ -.+.+|++.++.+.+...+| .+..
T Consensus 329 ~~f~--Tgs~d~ea~n~e~~~l~~~~---~~lif~t~ssd~~~~~~~ar~~---~~~~vwnl~~g~l~H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 329 DRFL--TGSRDGEARNHEFEQLAWRS---NLLIFVTRSSDLSSIVVTARND---HRLCVWNLYTGQLLHNLMGHSDEVYV 400 (1113)
T ss_pred cccc--cccCCcccccchhhHhhhhc---cceEEEeccccccccceeeeee---eEeeeeecccchhhhhhcccccceee
Confidence 8888 78888777777654221111 111112222222 344445433 47899999999877776665 4555
Q ss_pred EEECCCCCE-EEEEEcCCceeeCCcEEEEee-cCcee--eeeecccceeeEEEcCCCCCC
Q 013884 285 SEWSPDGRY-FMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 285 ~~wspdg~~-l~tas~~~rl~~D~~i~iw~~-~g~~~--~~~~~~~~~~~~w~p~~~~~~ 340 (434)
+.++|=... .++++. |+..-|||+ .|..+ |.....++.+-+|++++..+.
T Consensus 401 Ld~Hpfn~ri~msag~------dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGY------DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred eeecCCCcHhhhhccC------CCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence 899986554 456666 999999998 44433 333445788888998876543
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=0.00073 Score=61.92 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=126.2
Q ss_pred eeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|.+ ++.++.+- ..++|+.|+.... .......+....+.+. ++ +..+.+ . . ..+.+++..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~~~G~~~~~~~-g~l~v~-~--~----~~~~~~d~~~g~- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPGPNGMAFDRPD-GRLYVA-D--S----GGIAVVDPDTGK- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSSEEEEEEECTT-SEEEEE-E--T----TCEEEEETTTTE-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCCCceEEEEccC-CEEEEE-E--c----CceEEEecCCCc-
Confidence 578888 66666555 4579999998763 2233455557777777 55 333322 1 1 233555655411
Q ss_pred CCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884 131 SQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 131 ~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg 207 (434)
-+.+..... .......+.+.++|+ |.+ ++........ .....+|.++..+. .......-...+.++|+||+
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~-t~~~~~~~~~--~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LYV-TDSGGGGASG--IDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS--EEE-EEECCBCTTC--GGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCC-EEE-EecCCCcccc--ccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence 122222210 122345688899998 333 3222211111 00035777776632 22222223456899999999
Q ss_pred CEEEEEEccCCCeEEEEecc--ce------eEEEcCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 208 SEFAVVYGFMPASATIFNKK--CR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~--~~------~~~~~~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+.|.++ ....+.|..|++. .. .+..+... ....+++..+|++.++.- + .+.|.++|.+ ++.+..+
T Consensus 146 ~~lyv~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~--~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G--GGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T--TTEEEEEETT-SCEEEEE
T ss_pred hheeec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C--CCEEEEECCC-ccEEEEE
Confidence 988874 5566789998874 22 22334333 256799999998666443 3 3799999987 7766655
Q ss_pred eC--CCceEEEE-CCCCCEEEEEEc
Q 013884 278 RA--ECSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 278 ~~--~~~~~~~w-spdg~~l~tas~ 299 (434)
.- ..++.|+| -||.+.|...+.
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCCCEEEEEEECCCCCEEEEEeC
Confidence 44 47778999 578777766553
No 271
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.47 E-value=0.00033 Score=69.51 Aligned_cols=254 Identities=11% Similarity=0.042 Sum_probs=134.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec------------CC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA------------TN 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~------------~~ 70 (434)
..+.+||||++|+..-...|.+...|+|.|+.+|+.+....... ... .+.|++|++.|.... ..
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESE-EEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccc-eEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 36789999999997655555556789999999998765432221 111 389999988776652 22
Q ss_pred eEEEEeCCCCCCc--eeeeeecC-C-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeee-cccce
Q 013884 71 EIQFFDTTDFPKG--ILYRLRVP-G-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSF-FRCST 144 (434)
Q Consensus 71 ~i~v~~~~~~~~~--~~~~~~~~-~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~-~~~~~ 144 (434)
.|..|++...... .+...... . ...+..|++ +.++.+....... ...+.+.++.... .......... .....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 4788887664322 12222222 2 457788888 4555554443322 3677777776520 0112222221 22222
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-- 219 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-- 219 (434)
..+... |..+.+.+..+ .. ...|..+++..... ..+-+.....+.--.++..+++|++.+ ..++
T Consensus 281 ~~v~~~--~~~~yi~Tn~~--a~------~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~-~~~~~~ 349 (414)
T PF02897_consen 281 YYVDHH--GDRLYILTNDD--AP------NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY-RENGSS 349 (414)
T ss_dssp EEEEEE--TTEEEEEE-TT---T------T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE-EETTEE
T ss_pred EEEEcc--CCEEEEeeCCC--CC------CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE-EECCcc
Confidence 223222 56666554311 11 11355555443321 112233333233333344567777643 3344
Q ss_pred eEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCEEE
Q 013884 220 SATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 220 ~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~--~~~~~~~g~i~iwd~~~~~~i 274 (434)
.|.++|+. +...... ..+.+..+...+++..+.+ .++- ..++++-||+.+++..
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~-~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT-TPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT-EEEEEEEEETTTTCEE
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC-CCCEEEEEECCCCCEE
Confidence 78899998 7666654 3444566666677764433 3432 4678999999988543
No 272
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.44 E-value=5.3e-07 Score=85.13 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=117.1
Q ss_pred CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC
Q 013884 114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~ 193 (434)
+|..+.|-.+|..+ ....+.+.. ...+..+.|-...+++++.- +.| +|.++-.|. ..--+.
T Consensus 147 gGrKGHlAa~Dw~t---~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ--------K~y-----~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 147 GGRKGHLAAFDWVT---KKLHFEINV-METVRDVTFLHNEQFFAVAQ--------KKY-----VYVYDNNGT--ELHCLK 207 (545)
T ss_pred cCCccceeeeeccc---ceeeeeeeh-hhhhhhhhhhcchHHHHhhh--------hce-----EEEecCCCc--EEeehh
Confidence 46667777777765 333333322 22344566666556654420 111 344443332 122233
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
...+|..+.|-|-- |.++++++.+-+..-|+.. +.+.++ ..+.+..+.-+|..-.+.+|. .+|+|.+|....
T Consensus 208 ~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s 282 (545)
T KOG1272|consen 208 RHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS 282 (545)
T ss_pred hcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCC
Confidence 35678889999854 5555788888999999864 444455 567778888999888888776 668999999988
Q ss_pred CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+.+..+..| .+..+++.++|+|++|++. |+.++|||+..
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~------Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGL------DRKVKIWDLRN 324 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeeccc------ccceeEeeecc
Confidence 8766665555 5566999999999999999 99999999955
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.3e-05 Score=77.97 Aligned_cols=260 Identities=13% Similarity=0.163 Sum_probs=152.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---------------EEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---------------VYQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---------------~~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
..|++|.....|++.++ .|+-++|-.+.+... -+++.+ |...|..+.|..+.+-|-+
T Consensus 17 L~c~~WNke~gyIAcgG-----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGG-----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred EEEEEEcccCCeEEecc-----ccceeEEEEccccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence 35888999999999887 899999987754321 012223 4477878999998888887
Q ss_pred e-cCCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCC----CCCceEEEEEcCCCCCCCceeeeee
Q 013884 67 M-ATNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESK----GSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 67 ~-~~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~----~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
+ .+|-|.||-+-..+-.. ...-...-|.+++|..+ +..|++...+.. ..++ -+||.-..
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdG-NRIwgKeL------------ 154 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDG-NRIWGKEL------------ 154 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeecc-ceecchhc------------
Confidence 7 45799999875533110 00111234789999998 455554433321 1111 14554332
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecC-----CCCCeEEEEEC----
Q 013884 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR-----KEGPVHDVQWS---- 204 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~-----~~~~i~~~~ws---- 204 (434)
-......+.|++|.+.+++.-. .|+. ++.+..|.+. +.+... ....|-.+.|.
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~a----------nge~--hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKA----------NGET--HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred chheccceeecccHHHHHhhhc----------CCcE--EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 1112236789998776654210 0322 2222223221 212111 02234556664
Q ss_pred ----cCCCEEEEEEccCCCeEEEEecc--ceeEEEcCCcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCE
Q 013884 205 ----YSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGK 272 (434)
Q Consensus 205 ----pdg~~~av~~g~~~~~i~l~d~~--~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~------~g~i~iwd~~~~~ 272 (434)
||...|+|++ ..|.+.|.... .+++.--..-.+..+.|+|+|..|+++|++.. ...|.||.. -|+
T Consensus 223 ~~v~pdrP~lavcy--~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~ 299 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCY--ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGH 299 (1189)
T ss_pred ccCCCCCCEEEEEE--cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chh
Confidence 5777888755 45677776442 23332222355677899999999999997641 235666643 345
Q ss_pred EEEEeeC--CCceEEEECCCCCEEEEEE
Q 013884 273 QLGTTRA--ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 273 ~i~~~~~--~~~~~~~wspdg~~l~tas 298 (434)
.+.+++- .+++.++|-..|-.++.|.
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEEe
Confidence 6666654 4777799998888888776
No 274
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1e-05 Score=70.57 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=81.9
Q ss_pred eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-------ceeEEE---------cCCcCeeEEEECCCCC
Q 013884 187 EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------CRPILE---------LGSGPYNTVRWNPKGK 249 (434)
Q Consensus 187 ~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-------~~~~~~---------~~~~~~~~i~~sP~g~ 249 (434)
...++ -.+++||++++|.. . |.+ ++. |+.|+=|.-+ ++.+.+ .+--.||++..-|...
T Consensus 53 ~~iv~eqahdgpiy~~~f~d--~-~Ll-s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en 127 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHD--D-FLL-SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN 127 (325)
T ss_pred cceeeccccCCCeeeeeeeh--h-hee-ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence 34444 33689999999982 2 333 233 4777665321 111111 1234689999999998
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013884 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~ 320 (434)
-|+++| -|+.++-||+++|+....+.+| +.++ +.--.....+++++. |+++||||. +++.+.
T Consensus 128 Si~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E------DGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 128 SILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE------DGTVRVWDTKTQKHVS 192 (325)
T ss_pred cEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC------CccEEEEeccccceeE
Confidence 888888 4479999999999999999988 3333 444234456889999 999999999 455443
No 275
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=0.00046 Score=68.03 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=98.9
Q ss_pred EEEECCCCCeEEEEEEecccccCcee------ecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEcc-
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSY------YGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGF- 216 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~------~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~- 216 (434)
.+.+|+..+.+++-+....+. ..-| +...+|+++...+.. +....+..++...++.||- +..++..+.-.
T Consensus 150 ~l~~N~~qDl~ivWW~~~~~e-~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~ 228 (545)
T PF11768_consen 150 HLSVNSSQDLVIVWWPSAQDE-VWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSI 228 (545)
T ss_pred eEeeccCCCEEEEEecCCCCC-cCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEec
Confidence 566666666555544332211 1111 122356676665542 2222233355667888886 33444433211
Q ss_pred -CCC----eEEEEeccce-----eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEE
Q 013884 217 -MPA----SATIFNKKCR-----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS 285 (434)
Q Consensus 217 -~~~----~i~l~d~~~~-----~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~ 285 (434)
.++ ...+|+...+ .+..+ ....+.++++||+...+++|- .||.|.+||...+.....-..--++.+
T Consensus 229 s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~i 305 (545)
T PF11768_consen 229 SVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTLI 305 (545)
T ss_pred CCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceEE
Confidence 122 4556766322 23334 467889999999999999998 778999999877633332222356679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+|+|+|..|++++. .|.+.+||+
T Consensus 306 aWHp~gai~~V~s~------qGelQ~FD~ 328 (545)
T PF11768_consen 306 AWHPDGAIFVVGSE------QGELQCFDM 328 (545)
T ss_pred EEcCCCcEEEEEcC------CceEEEEEe
Confidence 99999999999998 899999998
No 276
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.35 E-value=0.00073 Score=64.41 Aligned_cols=255 Identities=14% Similarity=0.091 Sum_probs=116.4
Q ss_pred EcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeec---CCeeEEEEeCCC
Q 013884 32 KTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRV---PGVAAFEVSKAP 102 (434)
Q Consensus 32 d~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~---~~v~~~~~sp~~ 102 (434)
|..||..|.++..... |..=...-+|++||+.|++.++ + .+.+.|+.+.. ..++.. .+.....+||+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~~- 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSPD- 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-TT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEecC-
Confidence 6778877777665432 1111224579999988877643 3 77777877743 333332 22334567777
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCce--------ee
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQS--------YY 172 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~--------~~ 172 (434)
+..+.++..+ ..|+-.++.+ .+.-....+...-+-...| +.+++.++.+.....|...-. |+
T Consensus 92 ~~~~~Yv~~~-----~~l~~vdL~T---~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 92 DRALYYVKNG-----RSLRRVDLDT---LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp SSEEEEEETT-----TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred CCeEEEEECC-----CeEEEEECCc---CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4444333222 2556666655 2222222222222223455 567777666554433332111 11
Q ss_pred --cceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE-EEEEE-ccC---CCeEEEEeccceeEEEcCCc----CeeE
Q 013884 173 --GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-FAVVY-GFM---PASATIFNKKCRPILELGSG----PYNT 241 (434)
Q Consensus 173 --g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~-~av~~-g~~---~~~i~l~d~~~~~~~~~~~~----~~~~ 241 (434)
-...|+.+++.++ +..+.+....-+..+.|||.... +++|. |.. +.+|.+.|.++.....++.. .+.-
T Consensus 164 a~p~~~i~~idl~tG-~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTG-ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp C---EEEEEEETTT---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred hCCCceEEEEECCCC-ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 1235677777765 44444444567788999996554 44433 211 23555556666555544322 2223
Q ss_pred EEECCCCCeEEEEec--CCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 242 VRWNPKGKFLCLAGF--GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 242 i~~sP~g~~l~~~~~--~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
=.|+|||..|..-+. +..+..|.-+|..+++.......+..+.+--++||+.|+-=++
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCC
Confidence 469999997665332 2234467778888886544445556667888999998865444
No 277
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=7.7e-05 Score=69.41 Aligned_cols=201 Identities=12% Similarity=0.159 Sum_probs=118.5
Q ss_pred EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C--CeEEEEeCCCCCCce
Q 013884 13 IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T--NEIQFFDTTDFPKGI 84 (434)
Q Consensus 13 ~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~--~~i~v~~~~~~~~~~ 84 (434)
+|+|+- .++++.+|.++.+. .+..+... ...-.+.=++.. .++|+++ . +.+.|||+.... .
T Consensus 117 ~Litc~-----~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q 185 (412)
T KOG3881|consen 117 TLITCV-----SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q 185 (412)
T ss_pred EEEEEe-----cCCcEEEEeccCCccccccceeeecC----CceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence 455555 67999999988554 22222222 112134445544 4555554 3 689999987642 1
Q ss_pred eeee----------ecC-CeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 85 LYRL----------RVP-GVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 85 ~~~~----------~~~-~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+... .++ -++++.|-++.. ..++. ...-+.|++|+.... ++|+.+..+......++...|+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat-----~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT-----ITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEE-----EecceeEEEecCccc--CcceeEeccccCcceeeeecCC
Confidence 1111 111 244555555421 22322 234468999999754 8999999999989999999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP- 230 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~- 230 (434)
|+.|++.. ..+ .|..++..+..-....+. -.|.|.++.-+|++..++ ++.-|..++|||++...
T Consensus 259 gn~Iy~gn-----~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la--s~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 259 GNFIYTGN-----TKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA--SCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CcEEEEec-----ccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEE--eeccceeEEEeecccchh
Confidence 99876532 111 133333333221111122 268999999999999888 56779999999998743
Q ss_pred EEE-cCCcCeeEEEEC
Q 013884 231 ILE-LGSGPYNTVRWN 245 (434)
Q Consensus 231 ~~~-~~~~~~~~i~~s 245 (434)
++. +-....|+|.+.
T Consensus 325 l~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 325 LHKVYVKSRLTFILLR 340 (412)
T ss_pred hhhhhhhccccEEEec
Confidence 222 134444444443
No 278
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=1.4e-05 Score=76.21 Aligned_cols=278 Identities=13% Similarity=0.076 Sum_probs=158.9
Q ss_pred CCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCC-ceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013884 48 TKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPK-GILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~ 124 (434)
|...+..+.|...|..|++++++ .|.+||-..... ......|..+|-...|-|..+ ..++ ..+.++.|++-.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-----~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-----TSSRDGQVRVSE 215 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-----eccccCceeeee
Confidence 45778889999999999999876 999999755332 111223444444445555432 2222 345667777777
Q ss_pred cCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee--CCCceeeeecCC-C---CCe
Q 013884 125 CGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLRK-E---GPV 198 (434)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~--~~~~~~~v~l~~-~---~~i 198 (434)
+.............-|...+..++--|+..+-+..+.. |.. +..++. .......+.-.. + -..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~---------v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAV---------VFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCccccccc--ccc---------eeeeeeccCCccceeeeeccCCccceee
Confidence 65421111123334455566666666655544333221 111 111211 111111111111 1 245
Q ss_pred EEEEECcCCC-EEEEEEccCCCeEEEEecc-------ceeEEEc--------CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 199 HDVQWSYSGS-EFAVVYGFMPASATIFNKK-------CRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 199 ~~~~wspdg~-~~av~~g~~~~~i~l~d~~-------~~~~~~~--------~~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
++++..|-.. +||| |.+|.-+++||.+ +..+..| ..-.|++++||.+|.-|+++= .+-.
T Consensus 285 ~~Ia~~P~nt~~faV--gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~ 359 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAV--GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDED 359 (559)
T ss_pred eeEecCCCCcccccc--CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccc
Confidence 7889998655 7884 8889999999875 2223333 134578999997776554443 2337
Q ss_pred EEEEEcc--CC----------EEEEE-eeCC-C--ce-E-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--
Q 013884 263 MAFWDYV--DG----------KQLGT-TRAE-C--SV-T-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK-- 321 (434)
Q Consensus 263 i~iwd~~--~~----------~~i~~-~~~~-~--~~-~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~-- 321 (434)
|+++... .| ..+.. +++| + .+ . --|-|..+|+++|+. =|.|-||+-.+. ++.-
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHHhh
Confidence 9998533 22 12222 5555 1 11 1 468999999999997 688999998654 3332
Q ss_pred eecccceeeEEEcCCCCCCCCc-hhhhhccCc
Q 013884 322 KMFDKLFQAEWKPVSPDKFGDI-SELIKSVGS 352 (434)
Q Consensus 322 ~~~~~~~~~~w~p~~~~~~~~~-~~~~~~~~~ 352 (434)
.....+.++.=+|.-|-|.+.+ .+.+|.|.|
T Consensus 434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cccceEeccCCCCCCchhhccCCccceeeecC
Confidence 2334677888788877777664 555544443
No 279
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=0.00017 Score=71.06 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=59.6
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+..+..|.+.+++|+...|++ |..|+.+.+||......... ..-..+.++|+|+|.++++|+ .+|.+.+||+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A 329 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVL--GCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA 329 (545)
T ss_pred EecCCcceEEecCcccceEEE--EecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence 334788999999999999995 88999999999875543322 334457899999999999998 77899999976
No 280
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.33 E-value=0.0018 Score=60.01 Aligned_cols=235 Identities=13% Similarity=0.165 Sum_probs=141.1
Q ss_pred eeeecC-CCcEEEEec--CCeEEEEeCCCCCCceeeeeecC-C---eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 54 SIRFSS-DEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP-G---VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~-d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~-~---v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+..+| +...++++- .....+||..+.... ..+..+ + .-.-.|||++..+++ --.+.....+.|-||+..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~Lyt-TEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYT-TENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEE-eccccCCCcEEEEEEECc
Confidence 466788 455555553 348889998775532 222222 1 112478888543222 122224456799999997
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc---Cce----eecceeEEEEee-CCCceeeeecC---CC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT---NQS----YYGESKLNYLTT-DGTHEGLVPLR---KE 195 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~---~~~----~~g~~~l~~l~~-~~~~~~~v~l~---~~ 195 (434)
.. -+.+.....+...-..+.|.|||..|++. ....... ++. -.-..+|-+++. .|.......+. +.
T Consensus 86 ~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RG--YRRIGEFPSHGIGPHELLLMPDGETLVVA-NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred CC--cEEEeEecCCCcChhhEEEcCCCCEEEEE-cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 31 46666677777777889999999887664 2211111 110 011224555633 33323333342 35
Q ss_pred CCeEEEEECcCCCEEEEEEccC------CCeEEEEeccceeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFM------PASATIFNKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~------~~~i~l~d~~~~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
-.|..+++.++|.-++-. -++ +.-+.+++.... +..+ -.+.+-+|+++++|.++++.+...
T Consensus 163 lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG-- 238 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG-- 238 (305)
T ss_pred cceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC--
Confidence 679999999998755421 111 113445543321 2222 146778999999999888776533
Q ss_pred CeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
|.+.+||..+++.+....-.++.-++-.+++ ++++.+.
T Consensus 239 g~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCC
Confidence 6899999999999998887777778888887 5555443
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.28 E-value=3.7e-06 Score=91.12 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=125.7
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.++++|..+.=+|....++ ++++++.|++|.-... .+.++-++...+.+..+.++.+|+..-+. +.|.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yl------tgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYL------TGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDG 2273 (2439)
T ss_pred ecccCceeeecCCCCCceEE------ecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeee---ccCC
Confidence 34456677776666532222 3577889999998762 34455566666777888999999875442 2333
Q ss_pred cCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCCEEEEEEc--cCCCeEEEEecc----ceeEEEcCCcC
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYG--FMPASATIFNKK----CRPILELGSGP 238 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~~~av~~g--~~~~~i~l~d~~----~~~~~~~~~~~ 238 (434)
... +|... ...+.- -++...+++.|--. .++- .| ..++.+.+||.- ...++..|.+.
T Consensus 2274 ~l~-------l~q~~-----pk~~~s~qchnk~~~Df~Fi~s--~~~t-ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2274 DLS-------LWQAS-----PKPYTSWQCHNKALSDFRFIGS--LLAT-AGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred cee-------ecccC-----CcceeccccCCccccceeeeeh--hhhc-cccCCCCCcccchhcccCcccceeeeecCCC
Confidence 322 22221 001110 12345566776542 2232 12 244589999963 33466779999
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.++++|-|.-++|++|| .+|.|++||++..+++++++. |. ...+|++++. .+.++||++++-
T Consensus 2339 aT~l~~~P~~qllisgg---r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGG---RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEF 2400 (2439)
T ss_pred ceEEEEcCcceEEEecC---CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEcccc
Confidence 99999999999999999 668999999998888877765 55 6678999998 999999999774
No 282
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=6.2e-06 Score=79.56 Aligned_cols=140 Identities=13% Similarity=0.157 Sum_probs=102.2
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc---CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEE
Q 013884 193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~---~~~~~~~i~~sP~g--~~l~~~~~~~~~g~i~iw 266 (434)
.+.|.|+++.|+.||..|+ +|+.|-.+.|||. +.+.++.+ |.+.|-++.|-|.. +++++|+.| ..|+++
T Consensus 48 GH~GCVN~LeWn~dG~lL~--SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD---k~i~lf 122 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLA--SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD---KLIKLF 122 (758)
T ss_pred cccceecceeecCCCCEEe--ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc---ceEEEE
Confidence 3589999999999999998 7999999999997 45555555 67778899999954 466666634 599999
Q ss_pred EccCC----------EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc--eee---------ee
Q 013884 267 DYVDG----------KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS--LFF---------KK 322 (434)
Q Consensus 267 d~~~~----------~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~--~~~---------~~ 322 (434)
|+... +.+..+..| .+-.++-.|++ ..|.+|+. ||+|+-+|+..- +-. ..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE------DGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE------DGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC------CcceeeecccCCccCCccccccHHHHHh
Confidence 99852 223333333 33348889999 77888888 999999999441 111 11
Q ss_pred --ecccceeeEEEcCCCCCCCCc
Q 013884 323 --MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 --~~~~~~~~~w~p~~~~~~~~~ 343 (434)
..-++.++.-+|..+.+|.-+
T Consensus 197 ~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred chhhheeeeeeecCCCCceEEec
Confidence 224788999999888877543
No 283
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.26 E-value=0.00012 Score=77.19 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=116.6
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC----ceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ----PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~----~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
..+..++.++....+++ +++.+|+|++|++....... ...+.........++..-+.|+.+++.+ .|
T Consensus 1049 ~~v~k~a~s~~~~s~Fv-----sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~D- 1119 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFV-----SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KD- 1119 (1431)
T ss_pred ccccceeecCCCCceEE-----EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CC-
Confidence 34556667766444444 45778999999986532110 0111111122223333334444444431 11
Q ss_pred cCceeecceeEEEEeeCCC-c-----eeeeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccee-----EEEc
Q 013884 167 TNQSYYGESKLNYLTTDGT-H-----EGLVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-----ILEL 234 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~-~-----~~~v~l~~~~~i~~~-~wspdg~~~av~~g~~~~~i~l~d~~~~~-----~~~~ 234 (434)
|...++.++.... + .....+.+.|.+.++ ++........++++..-+.+..||.+... ..+.
T Consensus 1120 ------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1120 ------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred ------CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 2222333332111 0 111123345555443 33332233344467777899999986432 2234
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEE---ECCCCCEEEEEEcCCceeeCCc
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSE---WSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~---wspdg~~l~tas~~~rl~~D~~ 308 (434)
..|.+++++.+|.+.++++|. ..|.+.+||++=+..+.....+ .+..+. ..|.....++++.. ..|.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGt---s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~ne 1266 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGT---SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNE 1266 (1431)
T ss_pred cccceeEEEecCCceEEEEec---CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCc
Confidence 678999999999999999998 6689999999987777766654 333333 34444566655542 2789
Q ss_pred EEEEeecCcee
Q 013884 309 IKIFHHNGSLF 319 (434)
Q Consensus 309 i~iw~~~g~~~ 319 (434)
+-+|++.+...
T Consensus 1267 vs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1267 VSTWNMETGLR 1277 (1431)
T ss_pred eeeeecccCcc
Confidence 99999976543
No 284
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.25 E-value=0.0014 Score=61.47 Aligned_cols=252 Identities=13% Similarity=0.135 Sum_probs=132.1
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecC---cC-CCCCCeeeecCCCcEEEEec-C--Ce
Q 013884 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKN---MT-KTTWPSIRFSSDEAVACRMA-T--NE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~---~~-~~~~~~~~~S~d~~~la~~~-~--~~ 71 (434)
.+..||||+.+.+.+-+- +.-+.-|.+||..|-.....+.-.. .. ...-..++.|.||+++.... . ..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999999765321 1224579999999988776544331 10 01112578999999998773 2 58
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eeccccee----E
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTV----Q 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~----~ 146 (434)
|.|-|+.... ....+..++...+--++. ..+... ..++.+....+... +++.... .+|..+.- .
T Consensus 120 VtVVDl~~~k--vv~ei~~PGC~~iyP~~~--~~F~~l-----C~DGsl~~v~Ld~~--Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 120 VTVVDLAAKK--VVGEIDTPGCWLIYPSGN--RGFSML-----CGDGSLLTVTLDAD--GKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp EEEEETTTTE--EEEEEEGTSEEEEEEEET--TEEEEE-----ETTSCEEEEEETST--SSEEEEEEEESSTTTS-B-S-
T ss_pred EEEEECCCCc--eeeeecCCCEEEEEecCC--CceEEE-----ecCCceEEEEECCC--CCEeEeeccccCCCCcccccc
Confidence 9999987732 455666777655443332 112111 12345555555532 2332111 12211110 1
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee---ecC---------CCCCeEEEEECcCCCEEEEE-
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR---------KEGPVHDVQWSYSGSEFAVV- 213 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~---------~~~~i~~~~wspdg~~~av~- 213 (434)
-.+...+..+++. +|.| .+|.++..+...... .+- ..|.-.-+++++..++|.+.
T Consensus 189 ~~~~~~~~~~~F~----------Sy~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 189 PAYSRDGGRLYFV----------SYEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp -EEETTTTEEEEE----------BTTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cceECCCCeEEEE----------ecCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1222233333332 2333 356655555421111 111 03444568888766655543
Q ss_pred EccCC-----C--eEEEEeccce-eEEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 214 YGFMP-----A--SATIFNKKCR-PILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 214 ~g~~~-----~--~i~l~d~~~~-~~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
....+ + .|++||++.. .+..++ ..++++|..|-+.+ +|+.... .++.|.+||..+++.+...+.-
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE---
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhcc
Confidence 22111 1 6788898644 444553 46788999999988 4443332 3479999999999999888754
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.24 E-value=0.0027 Score=58.10 Aligned_cols=223 Identities=11% Similarity=0.049 Sum_probs=118.9
Q ss_pred eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCcEEEEecCCeEEEEeCCCCC
Q 013884 4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
++.|.+ +|+++.+ .. ..+.|..|+..+++.. .+... . ...+.+. ++++++++.. +.+.++|.....
T Consensus 4 gp~~d~~~g~l~~~-D~----~~~~i~~~~~~~~~~~-~~~~~----~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DI----PGGRIYRVDPDTGEVE-VIDLP----G-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEE-ET----TTTEEEEEETTTTEEE-EEESS----S-EEEEEEECTTSEEEEEET-TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEE-Ec----CCCEEEEEECCCCeEE-EEecC----C-CceEEEEccCCEEEEEEc-CceEEEecCCCc
Confidence 567888 5555554 31 4578999998887542 23222 2 2266777 6777766654 555666876643
Q ss_pred Cceeeee-----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
....... ......++.+.|++.-++..-..........=.+|.+.. ...+......-.....+.|+|+|+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~---~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP---DGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET---TSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC---CCeEEEEecCcccccceEECCcchhe
Confidence 3222333 223467889999854222211111111110024444433 21111111111233579999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeC--CC----ceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTD--GT----HEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~----~~~~v~l~~~-~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~ 229 (434)
++.- + ....|+.++.. +. ......+... +..-.+++..+|+.++ +....+.|.+||.+++
T Consensus 149 yv~d-s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v--a~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 149 YVAD-S----------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV--ADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEE-T----------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE--EEETTTEEEEEETTSC
T ss_pred eecc-c----------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE--EEcCCCEEEEECCCcc
Confidence 6632 1 11124555443 22 0112223322 2366799999998666 3445679999999987
Q ss_pred eEEEc--CCcCeeEEEE-CCCCCeEEEE
Q 013884 230 PILEL--GSGPYNTVRW-NPKGKFLCLA 254 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~-sP~g~~l~~~ 254 (434)
.+..+ .....++++| -|+.+.|.+.
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 66654 4457788888 4776655544
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.00023 Score=75.15 Aligned_cols=259 Identities=13% Similarity=0.259 Sum_probs=138.7
Q ss_pred CCCeeeecCCCcEEEE-ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884 51 TWPSIRFSSDEAVACR-MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
.+.+++|-.|...++. ...|.|.+-|...... ........+|...+|||+ ...+++.... .++-+... +
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~D-ee~l~liT~~-----~tll~mT~-~-- 139 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPD-EELLALITGR-----QTLLFMTK-D-- 139 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCC-CcEEEEEeCC-----cEEEEEec-c--
Confidence 3447788776654444 4667888877766442 223334568999999999 5555543321 13333222 1
Q ss_pred CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884 130 QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 130 ~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws 204 (434)
-.++..+.. -....+.+-|....+.+-. ..++---++. +-.....+. + .....=..+.|-
T Consensus 140 -f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg-------s~gr~~~~~~-~~~ek~~~~----~--~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 140 -FEPIAEKPLDADDERKSKFVNVGWGRKETQFRG-------SEGRQAARQK-IEKEKALEQ----I--EQDDHKTSISWR 204 (1265)
T ss_pred -ccchhccccccccccccccceecccccceeeec-------chhhhccccc-ccccccccc----h--hhccCCceEEEc
Confidence 223332222 1222234444443322110 0000000000 000000000 0 001223469999
Q ss_pred cCCCEEEEEE---ccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEE
Q 013884 205 YSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLG 275 (434)
Q Consensus 205 pdg~~~av~~---g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~ 275 (434)
-||.+|||.+ .....++++||.++. +... ..+.-.+++|-|.|..+++-.....+++|.|+..+.. +...
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l 283 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL 283 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence 9999999832 111259999998732 2222 2344568999999999998776656779999987532 2222
Q ss_pred EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee---eecccceeeEEEcCCCC
Q 013884 276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~---~~~~~~~~~~w~p~~~~ 338 (434)
.+... .+..++|+.++..|++-++.-. ...|++|....-..|- ..+++..-+.|+|..+.
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e---~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~ 348 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLE---NSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEK 348 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccc---cceEEEEEecCeEEEEEEEEeccccccccccCCCce
Confidence 22221 2566999999999998444110 3349999976544332 34444444888885443
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.23 E-value=9.2e-05 Score=66.52 Aligned_cols=132 Identities=13% Similarity=0.146 Sum_probs=92.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-----cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEc
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-----~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
+.++....|+-....+++ +|..|+.+..||++.-..+. .|...|.+|.=|| .+.+|++|++|. .|++||+
T Consensus 165 e~E~Wta~f~~~~pnlvy-tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~Dt 240 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVY-TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDT 240 (339)
T ss_pred ceeeeeeecccCCCceEE-ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeeh
Confidence 567777888876666665 79999999999998222222 2667788888777 577999999876 9999999
Q ss_pred cCC-EEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee--------eeecccceeeEEEcC
Q 013884 269 VDG-KQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF--------KKMFDKLFQAEWKPV 335 (434)
Q Consensus 269 ~~~-~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~--------~~~~~~~~~~~w~p~ 335 (434)
++. +.+.... +.++..+.|+|--...+.+.. |-++++|-+++..... +.+..-.|...|+-.
T Consensus 241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred hcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeeccccccc
Confidence 854 5554332 348888999997654444433 2799999998554222 233446788888443
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.22 E-value=9.3e-05 Score=73.14 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=92.7
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l 223 (434)
...+.+||+|+.+++... |+-.||. ..+..... .|.-.+++|++ ...||+... ..+|.+
T Consensus 35 p~~ls~npngr~v~V~g~-----------geY~iyt--~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~--~~~I~I 93 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD-----------GEYEIYT--ALAWRNKA-----FGSGLSFVWSS-RNRYAVLES--SSTIKI 93 (443)
T ss_dssp -SEEEE-TTSSEEEEEET-----------TEEEEEE--TTTTEEEE-----EEE-SEEEE-T-SSEEEEE-T--TS-EEE
T ss_pred CeeEEECCCCCEEEEEcC-----------CEEEEEE--ccCCcccc-----cCceeEEEEec-CccEEEEEC--CCeEEE
Confidence 458899999999988421 2222333 11211111 35667899999 556886533 568998
Q ss_pred E-eccceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCC
Q 013884 224 F-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 224 ~-d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~ 301 (434)
| +.+...+..+. ...+..|.. |.+|++.+. +.|.+||.++++.+..+....+..+.||++|.+++..+
T Consensus 94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp EETTEE-TT-----SS-EEEEE----SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----
T ss_pred EEcCccccceEEcCCcccceEEc---CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---
Confidence 6 55444433332 223455555 898888763 26999999999999999887778899999999999987
Q ss_pred ceeeCCcEEEEeecCc------------eeee-ee-cccceeeEEEcCCCCCCCC
Q 013884 302 RLQIDNGIKIFHHNGS------------LFFK-KM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~------------~~~~-~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
+..+.|++++-. .+.. .+ ...+....|.-+ -.+|+.
T Consensus 164 ----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 164 ----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp ----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred ----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence 679999988666 2222 22 457888888876 455554
No 289
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.20 E-value=4.2e-05 Score=70.04 Aligned_cols=247 Identities=11% Similarity=0.176 Sum_probs=138.2
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc-ee----ee-----------ee-cCCeeEEEEeCCCCCeEEEEec
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG-IL----YR-----------LR-VPGVAAFEVSKAPGSHVAVFVP 111 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~-~~----~~-----------~~-~~~v~~~~~sp~~~~~ia~~~~ 111 (434)
+.+.++.|..+|.+||+|. +|.|.+|.-...... .. .. +. .+.|..+.|.++++.. .|..
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a--~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA--EFLL 103 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc--EEEE
Confidence 5566899999999999994 579988875443221 00 00 11 1257777888764422 2211
Q ss_pred CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee--
Q 013884 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-- 189 (434)
Q Consensus 112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-- 189 (434)
.+.+.++++|.+... ... + +...+.+..+-..+ + .|. +.+.+..+..
T Consensus 104 --stNdktiKlWKi~er---~~k--~-----~~~~~~~~~~~~~~---~---------------~lr-~p~~~~~~~~ve 152 (433)
T KOG1354|consen 104 --STNDKTIKLWKIRER---GSK--K-----EGYNLPEEGPPGTI---T---------------SLR-LPVEGRHDLEVE 152 (433)
T ss_pred --ecCCcceeeeeeecc---ccc--c-----ccccccccCCCCcc---c---------------eee-ceeeccccceee
Confidence 134568899998662 111 1 11122221110000 0 000 0000111110
Q ss_pred ------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ce---eEEEcC-------CcCeeEEEECCCCC-eE
Q 013884 190 ------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CR---PILELG-------SGPYNTVRWNPKGK-FL 251 (434)
Q Consensus 190 ------v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~---~~~~~~-------~~~~~~i~~sP~g~-~l 251 (434)
..-.|...|+++.++.|+..|. + ..|=+|.||+++ .. -+.+.. +.-+++..|+|.-- .+
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~l--S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFL--S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEe--e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence 0112356788999999988887 3 345699999885 22 233331 23467788999765 44
Q ss_pred EEEecCCCCCeEEEEEccCCE-------EEEEeeC-----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 252 CLAGFGNLPGDMAFWDYVDGK-------QLGTTRA-----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~-------~i~~~~~-----------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+..+ ..|+|++.|++... +...... ..++++.||++|+|+++-.. .+|+|||
T Consensus 230 ~YSS---SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-------ltvk~wD 299 (433)
T KOG1354|consen 230 VYSS---SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-------LTVKLWD 299 (433)
T ss_pred EEec---CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------ceeEEEe
Confidence 4444 55899999987321 1111111 14456999999999998764 8999999
Q ss_pred ec--Cceeeeeec--------------c---cceeeEEEcCCCCCCCC
Q 013884 314 HN--GSLFFKKMF--------------D---KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 314 ~~--g~~~~~~~~--------------~---~~~~~~w~p~~~~~~~~ 342 (434)
++ .+.+...+. + .-+++.|+-.+..+++.
T Consensus 300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 83 332222111 1 24678899887777765
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.18 E-value=0.00048 Score=63.33 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=57.2
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+.+++.+..|.|....+. +|..+.++.+||+-+.. .. .++...+..+.+-+.-+.+.+++ .+|.|.+||.+
T Consensus 196 h~~~~~~l~Wd~~~~~Lf--Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn 270 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLF--SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN 270 (404)
T ss_pred cccceEEEEEcCCCcEEE--eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence 478999999998776666 68889999999985432 22 33677888888888888888888 67899999987
Q ss_pred C
Q 013884 270 D 270 (434)
Q Consensus 270 ~ 270 (434)
.
T Consensus 271 ~ 271 (404)
T KOG1409|consen 271 V 271 (404)
T ss_pred c
Confidence 4
No 291
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00068 Score=68.42 Aligned_cols=121 Identities=15% Similarity=0.245 Sum_probs=79.9
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-------------EE--EcCCcCeeEEEECCCCCeEEEEecCCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-------------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
....+.+.+||||+++++ ++.....+.++|++... +. .++.+|. ..+|.++|....+.- .
T Consensus 320 GKsPHGV~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf---~ 394 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLF---L 394 (635)
T ss_pred CCCccceEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEe---e
Confidence 446789999999999987 57777899999985422 11 2245553 357889987554444 4
Q ss_pred CCeEEEEEccC----------CEEEEEeeCC-CceEEE------ECCCCCEEEEEEcCCceee-------CCcEEEEeec
Q 013884 260 PGDMAFWDYVD----------GKQLGTTRAE-CSVTSE------WSPDGRYFMTATTAPRLQI-------DNGIKIFHHN 315 (434)
Q Consensus 260 ~g~i~iwd~~~----------~~~i~~~~~~-~~~~~~------wspdg~~l~tas~~~rl~~-------D~~i~iw~~~ 315 (434)
+..|..||+.+ ...+..+.-| .+-++. -.|||++|++.....+-|. -..-++.|++
T Consensus 395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIs 474 (635)
T PRK02888 395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDIS 474 (635)
T ss_pred cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEcc
Confidence 46999999875 2344444433 233333 3899999999876554321 2356788888
Q ss_pred Cceee
Q 013884 316 GSLFF 320 (434)
Q Consensus 316 g~~~~ 320 (434)
|..+.
T Consensus 475 gdkM~ 479 (635)
T PRK02888 475 GDKMK 479 (635)
T ss_pred CCeeE
Confidence 87543
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.17 E-value=0.0012 Score=72.59 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=50.2
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCc---------------CeeEEEECCCCCeEEEEecCCCCCe
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSG---------------PYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~---------------~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
..++++++|+.++ +...+++|++||.++..+..+ +.+ ....|+++|+|+++++-. + ++.
T Consensus 807 ~Gvavd~dG~LYV--ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt-~--Nn~ 881 (1057)
T PLN02919 807 LGVLCAKDGQIYV--ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT-N--NSL 881 (1057)
T ss_pred ceeeEeCCCcEEE--EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-C--CCE
Confidence 5899999997544 566678999999976555433 111 245789999998655444 3 369
Q ss_pred EEEEEccCCEE
Q 013884 263 MAFWDYVDGKQ 273 (434)
Q Consensus 263 i~iwd~~~~~~ 273 (434)
|++||+++++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999998754
No 293
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00022 Score=69.74 Aligned_cols=189 Identities=10% Similarity=0.062 Sum_probs=111.8
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee--------------------cCCCcEEEE
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF--------------------SSDEAVACR 66 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~--------------------S~d~~~la~ 66 (434)
|+|-+.|+|... .|+.++|||+.+++.-..|.........-.+..| +-|-..++.
T Consensus 1 ~~~~~~~~A~~~-----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 1 SPPALDYFALST-----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred CCchhheEeecC-----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 356677888766 7999999999988765555432111111113333 224445666
Q ss_pred ec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884 67 MA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
+. .+.|.+|++...+...... .|..+|..+.++.+-. ++ .+.+.+..+..|+... ...++.....+..
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ci---yS~~ad~~v~~~~~~~---~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CI---YSVGADLKVVYILEKE---KVIIRIWKEQKPL 146 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---ce---EecCCceeEEEEeccc---ceeeeeeccCCCc
Confidence 64 5799999988755322111 2345677777665411 12 2346677888888766 5555555555566
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC-----CCEEEEEEccC
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS-----GSEFAVVYGFM 217 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd-----g~~~av~~g~~ 217 (434)
..++..+|||..+++. + . .|..+++... +....+ .|.++|..++|--+ |.+|... ..+
T Consensus 147 ~~sl~is~D~~~l~~a-s----~---------~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~ 210 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTA-S----R---------QIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAA 210 (541)
T ss_pred cceEEEcCCCCEEEec-c----c---------eEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeec-ccc
Confidence 6788899998876652 1 1 2444444443 333333 35899999999876 6666642 223
Q ss_pred CCeEEEEe
Q 013884 218 PASATIFN 225 (434)
Q Consensus 218 ~~~i~l~d 225 (434)
..-+.+|=
T Consensus 211 ~r~i~~w~ 218 (541)
T KOG4547|consen 211 ERGITVWV 218 (541)
T ss_pred ccceeEEE
Confidence 44555553
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00038 Score=65.21 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=58.1
Q ss_pred CcceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013884 1 MLLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~ 77 (434)
.|+.|+|||..+ .|..++ -+..|+|.|+++..++.+|...+ ..| +++|--|+...++++ +|.|.|||+
T Consensus 195 ~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~~---~~w-SC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAYN---QIW-SCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhhhhccCccccceeeeec-----cCceEEEEecccceeeeheeccC---Cce-eeeeccCCcceeEEeccCceEEEEEc
Confidence 378899999988 555555 67899999999999999988764 678 889998887666654 479999999
Q ss_pred CCCC
Q 013884 78 TDFP 81 (434)
Q Consensus 78 ~~~~ 81 (434)
...+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 7754
No 295
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.0049 Score=62.42 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeccc-----e-eEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--
Q 013884 203 WSYSGSEFAVVYGFMPASATIFNKKC-----R-PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-- 273 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~i~l~d~~~-----~-~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-- 273 (434)
+.++|+...+ + +++|.++|.+. . .+..+. ...-..+.+||||+++++++. +..++.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V--~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 284 AVKAGKFKTI--G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hhhCCCEEEE--C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhh
Confidence 4467876554 2 45899999875 2 233332 333467999999999998874 457999999987542
Q ss_pred ----------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 274 ----------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 274 ----------i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+...+ +....+.+|+++|..+.|--. |..|..|++..
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~------dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL------DSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEee------cceeEEEehHH
Confidence 33332 336778899999986555555 99999999854
No 296
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.09 E-value=0.0078 Score=59.73 Aligned_cols=249 Identities=13% Similarity=0.040 Sum_probs=128.9
Q ss_pred eeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEE
Q 013884 54 SIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQI 122 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i 122 (434)
.+.+||||++||.+.+ | +|+|+|+.+... ....+.......+.|++++..++..-.++. .+.+..|..
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 3578999999998721 2 799999987532 112222222234999998443333323332 223778999
Q ss_pred EEcCCCCCCCceeeeeecc-cc-eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-----ceeeeecCCC
Q 013884 123 YACGKDLQSQPLARRSFFR-CS-TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-----HEGLVPLRKE 195 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~-~~-~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-----~~~~v~l~~~ 195 (434)
|.+.+.. ........... .- .+.+.+++||++|++......+ +..+|+++.... .-..+.....
T Consensus 207 ~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--------~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 207 HKLGTPQ-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--------ESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp EETTS-G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--------EEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred EECCCCh-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--------CCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 9986521 11011111111 12 5678899999998776543221 135788877653 1222222234
Q ss_pred CCeEEEEECcCCCEEEEEEccC--CCeEEEEecccee----E-EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP----I-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~----~-~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
+..+.+... |..|.+.+... .++|...++.... . .-+ +...+.-..++..+.+|++....+....|.++|
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 444455544 66666655432 2366666664211 1 112 333334445556678888876666667899999
Q ss_pred ccCCEEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 268 YVDGKQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 268 ~~~~~~i~~~~~~--~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+..+......... . +..+...+++..+....+++.. -.++..||+..
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t 405 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLAT 405 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE--EEEEEEEETTT
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCC
Confidence 9844444433332 2 2335555666655554442211 34566666633
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.05 E-value=1.5e-05 Score=50.06 Aligned_cols=36 Identities=28% Similarity=0.631 Sum_probs=31.8
Q ss_pred EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
+++..+.+| .+..++|+|++.+|++++. |+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence 567778777 5667999999999999999 99999997
No 298
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.0014 Score=65.00 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=72.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
.+.|+++|+|++++.++ |+.-.|+.....+. ..+.. .. .+.|+++++|++.-.+++|.|+......
T Consensus 35 p~~ls~npngr~v~V~g------~geY~iyt~~~~r~-k~~G~------g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG------DGEYEIYTALAWRN-KAFGS------GL-SFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEEEE------TTEEEEEETTTTEE-EEEEE-------S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEEEc------CCEEEEEEccCCcc-cccCc------ee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence 46799999999999965 78888887544433 22221 12 6789998887777778899998543322
Q ss_pred CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
....+..+. +..+ -+ +..+++-. ...|.+||..+ ++.+++..... +..+.||++|+.+++++
T Consensus 101 --~~k~i~~~~~~~~I--f~--G~LL~~~~------~~~i~~yDw~~---~~~i~~i~v~~--vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 101 --VVKSIKLPFSVEKI--FG--GNLLGVKS------SDFICFYDWET---GKLIRRIDVSA--VKYVIWSDDGELVALVT 163 (443)
T ss_dssp --TT-----SS-EEEE--E---SSSEEEEE------TTEEEEE-TTT-----EEEEESS-E---EEEEE-TTSSEEEEE-
T ss_pred --cceEEcCCcccceE--Ec--CcEEEEEC------CCCEEEEEhhH---cceeeEEecCC--CcEEEEECCCCEEEEEe
Confidence 112333332 2222 11 34444321 23699999988 77777766542 57899999999988874
No 299
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.03 E-value=0.00084 Score=68.99 Aligned_cols=164 Identities=12% Similarity=0.182 Sum_probs=88.1
Q ss_pred CCeeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884 91 PGVAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
..+.+.++||++ ..+++.. ......+..-.||-.+. +......+... ......|+|+|..|.+..... ....
T Consensus 350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~---gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~--~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL---GGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGN--TVVR 422 (591)
T ss_pred cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC---CCcceeeecCC-CCCCceECCCCCceEEEecCc--ceEE
Confidence 457788999984 4444432 21122222334444432 12222332222 367889999999887764211 0000
Q ss_pred e--eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE---Eecc-ce-eE---EEc--C-C
Q 013884 170 S--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI---FNKK-CR-PI---LEL--G-S 236 (434)
Q Consensus 170 ~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l---~d~~-~~-~~---~~~--~-~ 236 (434)
. ..+...+|.+.+.+..... ...+.|.++.|||||.+++++.+ ++|.+ -... +. .+ ..+ . .
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccC
Confidence 0 0133457777666543222 22568999999999999999864 46666 3322 22 11 112 1 2
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.....+.|.+++.++ ++..+ .+..++..++.
T Consensus 497 ~~~~~l~W~~~~~L~-V~~~~-~~~~v~~v~vD 527 (591)
T PRK13616 497 DTAVSLDWRTGDSLV-VGRSD-PEHPVWYVNLD 527 (591)
T ss_pred CccccceEecCCEEE-EEecC-CCCceEEEecC
Confidence 235789999999965 44432 22334444444
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.01 E-value=0.0025 Score=56.83 Aligned_cols=217 Identities=10% Similarity=0.084 Sum_probs=113.5
Q ss_pred CCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013884 25 EKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFE 97 (434)
Q Consensus 25 d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~ 97 (434)
.-+|-+|++.+.- .+..+.+ .+.|.| ..-+||.+ ..++..+|.....+. . .++....+.++.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~---------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h-~~~cd~snn~v~ 119 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYT---------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-H-LYQCDVSNNDVT 119 (344)
T ss_pred eeeeEeccccCCchhhEEeee---------cccccchHhhccccEEEeccccceeeeecccCccc-c-eeeecccccchh
Confidence 3467788875542 2333322 234544 23345544 568999999875332 1 122111122222
Q ss_pred EeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013884 98 VSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK 176 (434)
Q Consensus 98 ~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~ 176 (434)
+.... +...-+++ ...+.+++++.+.....+..+ .+.......+..++|++++.++. |. .+
T Consensus 120 ~~~r~cd~~~~~~i---~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vg----ds-~~------- 181 (344)
T KOG4532|consen 120 LVKRYCDLKFPLNI---ASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVG----DS-RR------- 181 (344)
T ss_pred hhhhhcccccceee---ccCCcceeEEEEecCccccee---eccccceeeeEEcCCCceEEEec----CC-Cc-------
Confidence 21110 00000111 123345566666542212222 12222355788899999876642 21 11
Q ss_pred EEEEeeCCCceeeee--cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EE------EcCCcCeeEEEEC
Q 013884 177 LNYLTTDGTHEGLVP--LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL------ELGSGPYNTVRWN 245 (434)
Q Consensus 177 l~~l~~~~~~~~~v~--l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~------~~~~~~~~~i~~s 245 (434)
++++.++...+..+. +. .+..=....|+.....||+ +..|+.+.|||++... .. .-|.+.+..+.||
T Consensus 182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv--~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 182 VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV--VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE--EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 233333332222221 11 2333457889999999996 6789999999997432 11 1268899999999
Q ss_pred CCCC--eEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 246 PKGK--FLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 246 P~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
|.|- +|...- .-+.+.+.|+++++...
T Consensus 260 l~g~lDLLf~sE---hfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 260 LYGLLDLLFISE---HFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred CCCcceEEEEec---CcceEEEEEcccCceee
Confidence 9775 333332 23579999999885433
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=3.1e-05 Score=70.97 Aligned_cols=136 Identities=12% Similarity=0.162 Sum_probs=97.7
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eE-EEcCCcCeeEEEECC-C
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PI-LELGSGPYNTVRWNP-K 247 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~-~~~~~~~~~~i~~sP-~ 247 (434)
.+-++++.+++...+. ..+.|.+.+|.-.++.+. .|...+.|..+|+++. +. .-+|...++++..-. +
T Consensus 235 qv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 235 QVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred eeEEEEeecccccccc--cchhHHHHHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 3444555555433332 467888889987666555 5899999999999754 23 334888888876655 5
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEE---EEEeeCCC-c---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013884 248 GKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAEC-S---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 319 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~---i~~~~~~~-~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~ 319 (434)
+++|++.+ ++|+|.+||.+--++ +..+++|- . .-+...+....+++++. |--.|||.+ +|.++
T Consensus 311 ~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 311 QQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGHLL 381 (425)
T ss_pred cceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCcee
Confidence 77888777 889999999875555 88888872 2 22667788889999888 999999999 46666
Q ss_pred eeeec
Q 013884 320 FKKMF 324 (434)
Q Consensus 320 ~~~~~ 324 (434)
...++
T Consensus 382 ~tipf 386 (425)
T KOG2695|consen 382 CTIPF 386 (425)
T ss_pred eccCC
Confidence 65543
No 302
>PRK10115 protease 2; Provisional
Probab=97.95 E-value=0.014 Score=61.60 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=123.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-------CeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-------NEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-------~~i~v 74 (434)
+..+.+||||++|+......+.+.-.|+|-|+.+|+.+...... .. ..+.|++|++.|+.... ..|..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 45678999999999877555555678999999998643222111 12 25899999987766521 36777
Q ss_pred EeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 75 FDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+++.+.. ...+.........-..+.+..+..+.+.. ..+..+.+.+++.+... .........-......+ ...
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 278 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL--ASATTSEVLLLDAELAD-AEPFVFLPRRKDHEYSL--DHY 278 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE--ECCccccEEEEECcCCC-CCceEEEECCCCCEEEE--EeC
Confidence 7777652 11122211111221223332234433222 23344567777753311 22111111111111112 122
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCC--CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~ 228 (434)
+..+.+.+..+.. ...|..+.+.. .....++-.....|.++.++ ++.+++. ...++ .+.++|..+
T Consensus 279 ~~~ly~~tn~~~~--------~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 279 QHRFYLRSNRHGK--------NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKT 347 (686)
T ss_pred CCEEEEEEcCCCC--------CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCC
Confidence 3555554322111 11244444331 11222222123467788887 5566654 44455 556667654
Q ss_pred eeEEEcC-Cc--CeeEEEEC--CCCC-eEEEEecCCCCCeEEEEEccCCE
Q 013884 229 RPILELG-SG--PYNTVRWN--PKGK-FLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 229 ~~~~~~~-~~--~~~~i~~s--P~g~-~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
..+..+. .. .+..+.++ +++. +++..+.-...+.++.+|..+++
T Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4444443 22 22333455 4444 44444433457899999998764
No 303
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.94 E-value=0.00016 Score=75.10 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=91.5
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE---EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 191 ~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~---~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
...++|.|.++.|+-||++++ +.++|..+++|++..... ..| |...+-.+.|.|+ .|++++ .+-+.++|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~--s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g---edctcrvW 243 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIA--SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG---EDCTCRVW 243 (967)
T ss_pred ecccCCceEEEEEccCCcEEE--EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec---cceEEEEE
Confidence 456799999999999999999 467899999999875443 234 7888899999999 888998 44599999
Q ss_pred EccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 267 DYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 267 d~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
+.+ ++.+..+..| .+..++.+++...++|++. |+++++|++.+..
T Consensus 244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG 291 (967)
T ss_pred ecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence 654 4555566655 5566899999999999999 9999999997653
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.018 Score=54.06 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=135.8
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec----
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV---- 90 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~---- 90 (434)
..+.|.|..+++.+..+... -...+..|||++.++... .+-|.+||..+........+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 57999999999988877653 233577899999887542 1479999998864322222221
Q ss_pred ---CCeeEEEEeCCCCCeEEEE--ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE-EECCCCCeEEEEEEecc
Q 013884 91 ---PGVAAFEVSKAPGSHVAVF--VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL-NWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 91 ---~~v~~~~~sp~~~~~ia~~--~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~-~ws~~G~~l~~~~~~~~ 164 (434)
.....+.+|++ +..+.++ .|. ..|.|.|+.. ++.+.....-. ...+ -+.++ .+..++ .
T Consensus 92 ~~~~~~~~~~ls~d-gk~~~V~N~TPa-----~SVtVVDl~~---~kvv~ei~~PG--C~~iyP~~~~-~F~~lC----~ 155 (342)
T PF06433_consen 92 QVVPYKNMFALSAD-GKFLYVQNFTPA-----TSVTVVDLAA---KKVVGEIDTPG--CWLIYPSGNR-GFSMLC----G 155 (342)
T ss_dssp -BS--GGGEEE-TT-SSEEEEEEESSS-----EEEEEEETTT---TEEEEEEEGTS--EEEEEEEETT-EEEEEE----T
T ss_pred eecccccceEEccC-CcEEEEEccCCC-----CeEEEEECCC---CceeeeecCCC--EEEEEecCCC-ceEEEe----c
Confidence 12334678887 5555554 444 3688888876 44444332211 1111 11111 111111 2
Q ss_pred cccCceeecceeEEEEeeCCCce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-----Ec-
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----EL- 234 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~----~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-----~~- 234 (434)
|.+.. ...++..|... ..+..+.+-.+..-+++..+..+.++ .+ .|.|+-.|+.+.... ++
T Consensus 156 DGsl~-------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy-~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 156 DGSLL-------TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SY-EGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TSCEE-------EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BT-TSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceE-------EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ec-CCEEEEEeccCCcccccCccccc
Confidence 22111 11222222211 11111112222345566566566553 23 567777776543221 11
Q ss_pred ---------CCcCeeEEEECCCCCeEEEE-ec---CC-CC--CeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013884 235 ---------GSGPYNTVRWNPKGKFLCLA-GF---GN-LP--GDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 235 ---------~~~~~~~i~~sP~g~~l~~~-~~---~~-~~--g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ta 297 (434)
..+...-+++++....|.+. .. ++ .+ -.|.++|+.+++.+..+... .+..++.|.|.+=++.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 12334558888755544432 11 11 12 35788899999999988753 55578999998855544
Q ss_pred -EcCCceeeCCcEEEEee-cCceeeee
Q 013884 298 -TTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 298 -s~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+.. ++.+.|||. +|+++...
T Consensus 307 ~~~~-----~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 307 LSAG-----DGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETT-----TTEEEEEETTT--EEEEE
T ss_pred EcCC-----CCeEEEEeCcCCcEEeeh
Confidence 332 678999998 77776654
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.93 E-value=0.0033 Score=56.71 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
....+-.+..||||.+|++.. ..|.|.+|++-+.++....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih---~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIH---FSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEE---cCCeEEEEecCcchhhccc
Confidence 356678899999999999998 6689999999877655543
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.92 E-value=0.00023 Score=66.59 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=64.6
Q ss_pred eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 187 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 187 ~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
.+...+.+..-+.+++||||+++++ +.+.|.+|++-..- +..+..| |+..|..++.-++ +.|+++|. |++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG---D~t 216 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG---DKT 216 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC---CCc
Confidence 4455566777889999999997777 78889999886542 3334443 6788888888765 45777773 459
Q ss_pred EEEEEccCCEEEEEeeC
Q 013884 263 MAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~ 279 (434)
|++||..+++++.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999988876654
No 307
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.89 E-value=0.00065 Score=70.68 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=115.6
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~ 84 (434)
+.-+.+.++.+. .++.+.|||...+..+........ .-....-+.++++.-+++++ .-++|.+|+........
T Consensus 95 l~~e~k~i~l~~-----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 95 LFEENKKIALVT-----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred hhhhcceEEEEE-----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 344556677766 667888998877765544333210 00011134567777788877 45788888876322212
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....|...+-++.+|-+ +.+++.+.. +..+|+|.+.+.
T Consensus 170 ~l~GHeG~iF~i~~s~d-g~~i~s~Sd-----DRsiRlW~i~s~------------------------------------ 207 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLD-GRYIASVSD-----DRSIRLWPIDSR------------------------------------ 207 (967)
T ss_pred eecccCCceEEEEEccC-CcEEEEEec-----Ccceeeeecccc------------------------------------
Confidence 13334444445555544 333333222 234455555431
Q ss_pred cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--C-CcCeeE
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G-SGPYNT 241 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~-~~~~~~ 241 (434)
.. ..-+-+.+...|.++.+.|+ +++ +...|-+.++|+..+.++..+ | ...+-.
T Consensus 208 -------------------~~-~~~~~fgHsaRvw~~~~~~n--~i~--t~gedctcrvW~~~~~~l~~y~~h~g~~iw~ 263 (967)
T KOG0974|consen 208 -------------------EV-LGCTGFGHSARVWACCFLPN--RII--TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK 263 (967)
T ss_pred -------------------cc-cCcccccccceeEEEEeccc--eeE--EeccceEEEEEecccceehhhhhhhhcceeE
Confidence 10 01122345788999999998 455 577889999998887766655 2 456788
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++..++...+++++ .||.+++||+...
T Consensus 264 ~~~~~~~~~~vT~g---~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 264 IAVPIGVIIKVTGG---NDSTLKLWDLNGR 290 (967)
T ss_pred EEEcCCceEEEeec---cCcchhhhhhhcc
Confidence 99999888888888 5579999998753
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.86 E-value=5.7e-05 Score=47.33 Aligned_cols=32 Identities=31% Similarity=0.732 Sum_probs=28.6
Q ss_pred EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 233 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 233 ~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
.-|.+.+++|+|+|++++|++++ .|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGS---SDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence 34789999999999999999999 556999997
No 309
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.83 E-value=0.00022 Score=78.09 Aligned_cols=196 Identities=11% Similarity=0.145 Sum_probs=122.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.++.=+|..-|-+|.+ .|+.|++|....++.+..+..... ..+..+.|+..|.-+..+ +||.|-+|.....
T Consensus 2211 v~r~~sHp~~~~Yltgs-----~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGS-----QDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eeeecCCCCCceEEecC-----CCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 34555567777777777 899999999999988888866543 667788999999877766 6789999998732
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
. ....+.|..+..+|.|-.. .++ ..+.....+.+.+||.-.
T Consensus 2284 ~-~~s~qchnk~~~Df~Fi~s---~~~--tag~s~d~~n~~lwDtl~--------------------------------- 2324 (2439)
T KOG1064|consen 2284 P-YTSWQCHNKALSDFRFIGS---LLA--TAGRSSDNRNVCLWDTLL--------------------------------- 2324 (2439)
T ss_pred c-eeccccCCccccceeeeeh---hhh--ccccCCCCCcccchhccc---------------------------------
Confidence 1 1122333334444443321 011 111112222333333211
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEcCCcCe
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPY 239 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~~~~~~ 239 (434)
.+. ...+..-|.+.++.+++-|.-..|+ +|+.+|.|.+||++..++ +.+..
T Consensus 2325 ----------------------~~~-~s~v~~~H~~gaT~l~~~P~~qlli--sggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2325 ----------------------PPM-NSLVHTCHDGGATVLAYAPKHQLLI--SGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred ----------------------Ccc-cceeeeecCCCceEEEEcCcceEEE--ecCCcCcEEEeehHHHHHHHHhhh---
Confidence 010 1111222367788899999776665 799999999999986543 33322
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+. .-.+++++. .+|+|.||++.....+.++..
T Consensus 2377 ----~~-~~~~f~~~s---s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGS---SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ----hh-hhheeeccC---cccceEEEEccccchhhcCch
Confidence 33 345677666 778999999988777766644
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00029 Score=70.67 Aligned_cols=285 Identities=11% Similarity=0.114 Sum_probs=157.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCC---cEEEEecCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDE---AVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~~~ 77 (434)
+.++..+|.|+=+|++++. .+.|-|+.. +...+-+.+. ..-.+..++||+.. ..++.-+...-.+|++
T Consensus 27 ~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--CcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 4578889999998888743 366667654 3333322221 11233467888754 3455445556778886
Q ss_pred CCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 78 TDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 78 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
...+. ......|..+|+++-|.|.....++. ...+..|..|++.+. ..++...........+++||-..-
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlat-----csvdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT-----CSVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceee-----ccccccceeeeccCC--CcceeeeecccccCceeeecccCc
Confidence 43221 12334456689999999985555553 233456788998663 566665555556667899987655
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---e
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---P 230 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~ 230 (434)
.+++... |. .++.++...+......+. +-..|+.++|..--... +.+..+|+++.+||-... .
T Consensus 172 ~vlassh-----------g~-~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~-~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 172 NVLASSH-----------GN-DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE-IMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred chhhhcc-----------CC-ceEEEeccCCCcceEEecccceeeehHHHhhhhhhh-hcccCCCCceeeeccccccccc
Confidence 5433211 11 122333222222222222 12344555554321111 225788999999987422 2
Q ss_pred EEEc-CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEE---------ccCC-EEEEEeeCCC--ceEEEECCCCC----
Q 013884 231 ILEL-GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWD---------YVDG-KQLGTTRAEC--SVTSEWSPDGR---- 292 (434)
Q Consensus 231 ~~~~-~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd---------~~~~-~~i~~~~~~~--~~~~~wspdg~---- 292 (434)
-+.. ...++---+|-|-|+-.++- ..|. ..+.+++ +.++ ..++.+.+|. +..+.|--.++
T Consensus 239 ~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~--n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 239 KRTVTTNFPIWRGRYLPFGEGYCIMPMVGG--NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGD 316 (1081)
T ss_pred ceeccccCcceeccccccCceeEeccccCC--eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCC
Confidence 2222 34566667788877744332 1111 1333333 3333 5688888883 33355544332
Q ss_pred ------EEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013884 293 ------YFMTATTAPRLQIDNGIKIFHHNGSLFFKK 322 (434)
Q Consensus 293 ------~l~tas~~~rl~~D~~i~iw~~~g~~~~~~ 322 (434)
.|+|-+. |..+|+|-+....+...
T Consensus 317 ~d~rdfQLVTWSk------D~~lrlWpI~~~i~~~~ 346 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSK------DQTLRLWPIDSQIQRLC 346 (1081)
T ss_pred CCccceeEEEeec------CCceEeeeccHHHHHhh
Confidence 5788888 99999999876544433
No 311
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.74 E-value=0.0013 Score=67.59 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=91.4
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------ 216 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~------ 216 (434)
.......+|+|+.+++.... .|.... ....||.....+.. ..+.. ........|+|||+.++++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEE
Confidence 34567889999999887643 222211 23457877754432 33322 2347889999999988765421
Q ss_pred ----CCCeEEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEE---EEccCCE-EEE---Ee-eC-CC-c
Q 013884 217 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLG---TT-RA-EC-S 282 (434)
Q Consensus 217 ----~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i---wd~~~~~-~i~---~~-~~-~~-~ 282 (434)
..+.+.+.++++.....-..+.+..+.|||||..|++.. .|.|++ -....++ .+. .+ .. .. +
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 112333334443222211245799999999999888765 257877 4444553 121 11 11 12 4
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
..+.|..++..+ +++..+ +..+..-.++|..
T Consensus 500 ~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~ 530 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSN 530 (591)
T ss_pred ccceEecCCEEE-EEecCC----CCceEEEecCCcc
Confidence 669999999954 555411 3334444456653
No 312
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0067 Score=54.87 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeccc---e--eEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEcc-C
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R--PILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYV-D 270 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~--~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~-~ 270 (434)
..++.|++.|..+++ +...+.+.+-+.+. + +..+-|....-++.|+-.. +++.+|| .+|.+..||++ .
T Consensus 124 ~lslD~~~~~~~i~v--s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFV--SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEE--EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence 457889999998774 55566666443321 1 1222366667777777655 4666666 56899999998 4
Q ss_pred CEEEEE---eeCCCceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeeeec-ccceeeEEEcCCC
Q 013884 271 GKQLGT---TRAECSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP 337 (434)
Q Consensus 271 ~~~i~~---~~~~~~~~~~ws-pdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~~~~-~~~~~~~w~p~~~ 337 (434)
++.+.. ....+++++.=| |++.+|+||+. |..|++||.. |+.++.... .-+|.+.|.|.-.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY------De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY------DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEecc------ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 444433 122255554444 56889999999 9999999984 777776654 5799999999754
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0015 Score=62.13 Aligned_cols=246 Identities=16% Similarity=0.201 Sum_probs=142.0
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcC--CCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCce
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTE--TGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~ 84 (434)
..+|+.+++ .|+.++.|.-. +|.. +..|.. |...+.++.-|-|+.++++.. +..+++||+.++....
T Consensus 19 ka~fiiqAS-----lDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin 90 (558)
T KOG0882|consen 19 KAKFIIQAS-----LDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN 90 (558)
T ss_pred hhheEEeee-----cchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence 356777777 89999999732 2221 222222 335555777888999999864 5699999998876543
Q ss_pred eeeee-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884 85 LYRLR-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 85 ~~~~~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
..++. +++.....-+|+.. ..+++-.. ..+.+.+++-.... .+....+.+|...+..+..++-|...+..
T Consensus 91 miKL~~lPg~a~wv~skGd~~s~IAVs~~----~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSi--- 162 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWVTSKGDKISLIAVSLF----KSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSI--- 162 (558)
T ss_pred hcccccCCCceEEecCCCCeeeeEEeecc----cCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeec---
Confidence 33332 44555555555421 12333221 22456666643321 35566677788888899999988865432
Q ss_pred cccccCceeecceeEEEEee----CCCc-eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-E--
Q 013884 163 DVDKTNQSYYGESKLNYLTT----DGTH-EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-E-- 233 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~----~~~~-~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~-- 233 (434)
+...-..-|.++..+...+. .-.+ .-...+. ......++.|+|+|.++..+ ..|.+|++|+.++..+. .
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchhhhhhh
Confidence 11112222222211111000 0000 0011111 14566799999999999964 36789999987643221 1
Q ss_pred --------------------c-------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 234 --------------------L-------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 234 --------------------~-------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+ +...-..+.|...|++|+.+..= -|++.++.+++++..+
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~----gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL----GIKVINLDTNTVVRIL 313 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce----eEEEEEeecCeEEEEe
Confidence 0 01122458899999999988743 3899999888766554
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0033 Score=63.82 Aligned_cols=259 Identities=9% Similarity=0.038 Sum_probs=135.3
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC------C-----c-EEEEe-cC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD------E-----A-VACRM-AT 69 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d------~-----~-~la~~-~~ 69 (434)
.++.|||.| .|+.++ ...|.|-|..+-+.+.++..++ ..+..+.|+|- + . ++|++ ..
T Consensus 19 ~A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred cccccCccc-eEEEec------CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEecccc
Confidence 356788866 344433 4678888998888888877654 67778999862 1 2 23333 34
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC---CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG---SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
|.|.+||............+.+.+.++.|-|..+ ..++.. ..+..+.+|+..+ ++.+=..+.....-.+
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI-----h~ss~lvLwntdt---G~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI-----HGSSTLVLWNTDT---GEKFWKYDYSHEILSC 160 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe-----cCCcEEEEEEccC---CceeeccccCCcceee
Confidence 7999999765443233334445677777776532 223222 2345788888776 4433322222222223
Q ss_pred EEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE-----EEEEEccCCCe
Q 013884 147 LNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-----FAVVYGFMPAS 220 (434)
Q Consensus 147 ~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~-----~av~~g~~~~~ 220 (434)
+.+.| |.++++++.+.. -+...+..+..+ ..++.+.++.+.+-.. ...++|..
T Consensus 161 f~~DPfd~rh~~~l~s~g------------~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns--- 219 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKG------------FVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNS--- 219 (1062)
T ss_pred eeeCCCCcceEEEEccCc------------eEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhcccc---
Confidence 44444 233333332110 011111112111 1223333333222111 11111100
Q ss_pred EEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCC--EEEE
Q 013884 221 ATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGR--YFMT 296 (434)
Q Consensus 221 i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~--~l~t 296 (434)
...+..-..|.. ..-.++|+|.-+.++...+.. .+.++|++-..++....- .++-.+.|-||++ .|..
T Consensus 220 ----~ts~~~sa~fit-y~a~faf~p~~rn~lfi~~pr---ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 220 ----TTSTPASAYFIT-YCAQFAFSPHWRNILFITFPR---ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred ----ccCCCcchhHHH-HHHhhhcChhhhceEEEEecc---ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE
Confidence 000111111100 023468899998877777554 899999987766665543 3555689999876 3444
Q ss_pred EEcCCceeeCCcEEEEee
Q 013884 297 ATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 297 as~~~rl~~D~~i~iw~~ 314 (434)
.-. ||.+-||--
T Consensus 292 lH~------nG~ltirvr 303 (1062)
T KOG1912|consen 292 LHS------NGRLTIRVR 303 (1062)
T ss_pred Eec------CCeEEEEEe
Confidence 444 898999865
No 315
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.075 Score=52.53 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=52.2
Q ss_pred EEecCCCcEEEEEecCCC-----CCCC-cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013884 5 LTCLRVGLIIQTFQKSST-----PQEK-NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~-----~~d~-~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
++.+|.|.-+|.....+. .... .|.||+ ..|+.+.++.-.. ..+-.+.|+.++.+++...+|.+++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 566788888887753311 1123 499998 6688888876654 44459999999999998999999999975
Q ss_pred C
Q 013884 79 D 79 (434)
Q Consensus 79 ~ 79 (434)
.
T Consensus 110 G 110 (410)
T PF04841_consen 110 G 110 (410)
T ss_pred C
Confidence 3
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0015 Score=66.70 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=76.3
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG 83 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~ 83 (434)
.+|+|..-+++..+ .+....+.|.|+- .+|++-+..... -...+++|.|..-.|+.+ .-+.+.||.....+..
T Consensus 21 ~SWHPsePlfAVA~-fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVAS-FSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccCCCCceeEEEE-ecCCCCceEEEEe-cCCCCCcccccc----eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 46889888888765 2223457899984 788754322111 223378999999888888 4589999998774432
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+..-|...|..+.||++++..+. ...++.|.+|.+..
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t------~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMT------LDNPGSVHLWRYDV 132 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEE------cCCCceeEEEEeee
Confidence 233334557889999999654443 46788999999874
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.0052 Score=62.45 Aligned_cols=301 Identities=12% Similarity=0.127 Sum_probs=158.0
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCCCCC
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~~~~ 81 (434)
++|||.=+.++... .-..+.|+|++-..++....-.. ...+.++|-||.+ .|.++ .+|.+.||-.....
T Consensus 236 faf~p~~rn~lfi~-----~prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 236 FAFSPHWRNILFIT-----FPRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred hhcChhhhceEEEE-----eccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 46788655444433 33679999998888888776654 5666789999875 44444 67888888754321
Q ss_pred Cceee---eeecC---CeeEEEEeCCCCCeEEEEecCCCC------CCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884 82 KGILY---RLRVP---GVAAFEVSKAPGSHVAVFVPESKG------SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 82 ~~~~~---~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
..... .+..+ .+..+..--.--+.++..+|.+.. ..+.+.+|++.+.. -..-....+-..... |
T Consensus 308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r--i~~~~~s~~iel~~p--f 383 (1062)
T KOG1912|consen 308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR--IHLDYRSSSIELVLP--F 383 (1062)
T ss_pred ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC--cCccccccccccccc--c
Confidence 11111 11111 111111000001222233332211 22455677776521 111001101111111 2
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE--EEE-ECcCCCE-----EEEEEccCCCeE
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQ-WSYSGSE-----FAVVYGFMPASA 221 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~~~-wspdg~~-----~av~~g~~~~~i 221 (434)
+-.+..+++ +++.+..+..+|.+..-..+.+-.++- .+. --|.|+. -.+.-|...|+|
T Consensus 384 ~f~~~~~~v--------------~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 384 DFNLSTKLV--------------GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred cccCceeeh--------------hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 222222222 233344444444332222221111111 111 1122221 122248888999
Q ss_pred EEEeccceeEE---EcCCcCeeEEEECCCCCeEEEEecC-C-----CCCeEEEEEccCCE--EEEEeeCC---CceEEEE
Q 013884 222 TIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFG-N-----LPGDMAFWDYVDGK--QLGTTRAE---CSVTSEW 287 (434)
Q Consensus 222 ~l~d~~~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~-~-----~~g~i~iwd~~~~~--~i~~~~~~---~~~~~~w 287 (434)
-++|+..+.+. ..|.+.|.++.|--..+++-.+-.. | ....+.+-|+.+|. .+...+.+ .+..+.-
T Consensus 450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv 529 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV 529 (1062)
T ss_pred EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence 99999877654 3488999999998777665443211 0 23467888999883 33333332 4445899
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEE-cCCC
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWK-PVSP 337 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~-p~~~ 337 (434)
|.-|+||+..-. |.-+-|||+.+..+... ...-+..+.|. |.-+
T Consensus 530 S~~~~yLai~Fr------~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~ 577 (1062)
T KOG1912|consen 530 SSSGRYLAILFR------REPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHP 577 (1062)
T ss_pred cccCceEEEEec------ccchHHHhhccchHHHHHhhcCCcEEEEeecccCCC
Confidence 999999999998 99999999966544332 44568899998 5433
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00021 Score=73.04 Aligned_cols=268 Identities=11% Similarity=0.105 Sum_probs=154.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---CeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---NEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---~~i~v~~~~ 78 (434)
.+|++||-+.++|+.+. ..+.|+++++.+|....++..++ ..++.+.=|-||..+.+.+. --..+|+..
T Consensus 1104 fTc~afs~~~~hL~vG~-----~~Geik~~nv~sG~~e~s~ncH~---SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGS-----HAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred eeeEEeecCCceEEeee-----ccceEEEEEccCccccccccccc---cccccccccCCcceeeeeccccCchHHHhccc
Confidence 57999999999999988 78999999999998877776654 77778888999998887743 257899987
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-ee---ecccceeEEEECCCCC
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RS---FFRCSTVQLNWNRGST 154 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~---~~~~~~~~~~ws~~G~ 154 (434)
.-. ...+ .+..-..+.||...... +-+..+ ....||++.+ ..++.+ .+ ..........|||+.+
T Consensus 1176 s~~-~~~H--sf~ed~~vkFsn~~q~r----~~gt~~--d~a~~YDvqT---~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STG-GPRH--SFDEDKAVKFSNSLQFR----ALGTEA--DDALLYDVQT---CSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccc-Cccc--cccccceeehhhhHHHH----Hhcccc--cceEEEeccc---CcHHHHhcCcchhhhhhccccccCCCcc
Confidence 622 1222 23333445555331100 111122 3567889877 333322 11 1112234677899877
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~ 233 (434)
.+ +.. | -||.+.... .+-.+++-.--..-.|+|.|.++++. ..|||+++ ..++.
T Consensus 1244 LI--lnd-----------G--vLWDvR~~~---aIh~FD~ft~~~~G~FHP~g~eVIIN-------SEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1244 LI--LND-----------G--VLWDVRIPE---AIHRFDQFTDYGGGGFHPSGNEVIIN-------SEIWDMRTFKLLHS 1298 (1516)
T ss_pred eE--eeC-----------c--eeeeeccHH---HHhhhhhheecccccccCCCceEEee-------chhhhhHHHHHHhc
Confidence 54 211 1 244443221 11111111111123589999999873 36899874 34444
Q ss_pred cCCcCeeEEEECCCCCeEEEEec--CC------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884 234 LGSGPYNTVRWNPKGKFLCLAGF--GN------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 234 ~~~~~~~~i~~sP~g~~l~~~~~--~~------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
.+.-....+.|+..|..+...-. +. .-...+-+|..++..|.++... ++.+++-+|...++.+-.
T Consensus 1299 VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred CccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 44455567889998886653320 00 0012233455556666776654 555677788878877765
Q ss_pred cCCce---eeCCcEEEEee
Q 013884 299 TAPRL---QIDNGIKIFHH 314 (434)
Q Consensus 299 ~~~rl---~~D~~i~iw~~ 314 (434)
.-... +++...|++.+
T Consensus 1379 ~~~~~d~dq~sT~~r~yEI 1397 (1516)
T KOG1832|consen 1379 MEDQEDMDQFSTSARMYEI 1397 (1516)
T ss_pred ccChhhhhhhhhhhhhhhh
Confidence 42111 12345666665
No 319
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.42 E-value=0.0028 Score=59.47 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|-.-+..++||||+++|+++..| ..|++-....--.+..+ -+| .+..++.-++ +.|++++. |+++++
T Consensus 150 hvSml~dVavS~D~~~IitaDRD---EkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG------D~tlr~ 219 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRD---EKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG------DKTLRL 219 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCC---ceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC------CCcEEE
Confidence 45667899999999999999854 58988655433233222 223 4555666544 56899998 999999
Q ss_pred Eee-cCceeeeeec
Q 013884 312 FHH-NGSLFFKKMF 324 (434)
Q Consensus 312 w~~-~g~~~~~~~~ 324 (434)
||+ +|++++..+.
T Consensus 220 Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 220 WDITSGKLLDTCDL 233 (390)
T ss_pred EecccCCcccccch
Confidence 999 7887765544
No 320
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.41 E-value=0.0047 Score=55.16 Aligned_cols=115 Identities=7% Similarity=-0.032 Sum_probs=78.6
Q ss_pred ccCCCeEEEEeccceeEEE-cC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-E-EEEEeeCC---CceEEE
Q 013884 215 GFMPASATIFNKKCRPILE-LG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K-QLGTTRAE---CSVTSE 286 (434)
Q Consensus 215 g~~~~~i~l~d~~~~~~~~-~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~-~i~~~~~~---~~~~~~ 286 (434)
...|.+++++++....... .| .-..+++.+|||++++++.|..+ .|.+|.+.+. + .+....+. ...+..
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEecccCCCceeee
Confidence 4456677777765433222 12 23389999999999999998544 8999987643 3 33323332 334589
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeee------ecccceeeEEEcCCCC
Q 013884 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKK------MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~~------~~~~~~~~~w~p~~~~ 338 (434)
||.....||+++. |+.+.|||+. +.++..+ +...+..+.|.|.++.
T Consensus 211 ~s~~~~~FAv~~Q------dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 211 FSENDLQFAVVFQ------DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eccCcceEEEEec------CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 9999999999999 9999999983 3444332 2346888888886554
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.00019 Score=73.44 Aligned_cols=201 Identities=14% Similarity=0.221 Sum_probs=132.7
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
....+.++||-+ ..++++ +...|.|++|++.+ +......+.|+..++.+.=+.+|..++...+...
T Consensus 1101 ~~~fTc~afs~~-~~hL~v-----G~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~----- 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGG-TNHLAV-----GSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS----- 1166 (1516)
T ss_pred ccceeeEEeecC-CceEEe-----eeccceEEEEEccC---ccccccccccccccccccccCCcceeeeeccccC-----
Confidence 456788888877 555554 34557899999988 7888888889999988988999998766532211
Q ss_pred eeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc------CCcCeeEE
Q 013884 170 SYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL------GSGPYNTV 242 (434)
Q Consensus 170 ~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~------~~~~~~~i 242 (434)
.-..||.+...++. +.. -..-+.+.|+.. .++.++ |..-..+.+||+. +.++.++ ..-..|..
T Consensus 1167 ---PlsaLW~~~s~~~~--~Hs---f~ed~~vkFsn~-~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 ---PLSALWDASSTGGP--RHS---FDEDKAVKFSNS-LQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred ---chHHHhccccccCc--ccc---ccccceeehhhh-HHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 11134544322221 111 123456788865 455554 4444589999996 4444442 12345889
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCcee----------eCCcEEE
Q 013884 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQ----------IDNGIKI 311 (434)
Q Consensus 243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl~----------~D~~i~i 311 (434)
.|||+..+|+- +| .+||++..+.|+.|....... =.|+|.|..++.-+.-+.+| .|.+-..
T Consensus 1237 ~FsP~D~LIln------dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1237 HFSPCDTLILN------DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVT 1308 (1516)
T ss_pred ccCCCcceEee------Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEE
Confidence 99999998872 23 589998887787776654322 57999999999888644433 2666677
Q ss_pred EeecCceeeee
Q 013884 312 FHHNGSLFFKK 322 (434)
Q Consensus 312 w~~~g~~~~~~ 322 (434)
|+-+|..+|..
T Consensus 1309 FNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1309 FNSTGDVMYAM 1319 (1516)
T ss_pred eccCccchhhh
Confidence 77778776654
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.41 E-value=0.043 Score=49.99 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=100.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|+.|+|.|+.+.|.+... +.+.|...+. +|+.++.+..... .....+.+..++.|+++.. ++.|.++++...
T Consensus 24 ~SGLTy~pd~~tLfaV~d----~~~~i~els~-~G~vlr~i~l~g~--~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD----EPGEIYELSL-DGKVLRRIPLDGF--GDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEET----TTTEEEEEET-T--EEEEEE-SS---SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEEC----CCCEEEEEcC-CCCEEEEEeCCCC--CCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 578999999888887772 3566777775 6888888766543 4455789999998888774 678999988443
Q ss_pred CCc----eeeeee--c-----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--------eeeecc
Q 013884 81 PKG----ILYRLR--V-----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--------RRSFFR 141 (434)
Q Consensus 81 ~~~----~~~~~~--~-----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--------~~~~~~ 141 (434)
... ...++. . .++..++|.|..+..+++ +...|.. ||.+........+. ....+-
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPKR--LYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSEE--EEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCChh--hEEEccccCccceeecccccccccccee
Confidence 211 111122 1 257889999985554443 2233433 44443210011111 112233
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC--------CCeEEEEECcCCCEEEEE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~~~wspdg~~~av~ 213 (434)
.+...+.++|....|+++.+ .+.+ |..++..|.......|... ..--.|+|.++|+.+++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~----es~~-------l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv- 238 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSD----ESRL-------LLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV- 238 (248)
T ss_dssp S---EEEEETTTTEEEEEET----TTTE-------EEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-
T ss_pred ccccceEEcCCCCeEEEEEC----CCCe-------EEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-
Confidence 45667888888888877732 2222 4444444443444444421 13567999999976664
Q ss_pred EccCCCeEEEE
Q 013884 214 YGFMPASATIF 224 (434)
Q Consensus 214 ~g~~~~~i~l~ 224 (434)
++|...++|
T Consensus 239 --sEpNlfy~f 247 (248)
T PF06977_consen 239 --SEPNLFYRF 247 (248)
T ss_dssp --ETTTEEEEE
T ss_pred --cCCceEEEe
Confidence 347665554
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.056 Score=55.91 Aligned_cols=226 Identities=11% Similarity=0.067 Sum_probs=116.9
Q ss_pred eecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-c
Q 013884 56 RFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-P 133 (434)
Q Consensus 56 ~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~ 133 (434)
.|++.+..++.+. +|.|.+++-.- ....-.+.....+..+-+.-+....++....+..+.+..++||++.....+. |
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 5888888888774 56777776432 1101122222233333344432234443333334467789999987642222 3
Q ss_pred eee--eeec-------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee--ecCCCCCeEEEE
Q 013884 134 LAR--RSFF-------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQ 202 (434)
Q Consensus 134 i~~--~~~~-------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~ 202 (434)
.+. ...+ ......++.+.+-+.+++.- .+...--|.| ++.+....++ ....++||+.++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~~~~G-------Di~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVICYKG-------DILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEEEEcC-------cchhccccceeeeccCCCCceeeE
Confidence 332 1111 12223444444433322211 1111111111 2222222222 333478999999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEecccee----EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884 203 WSYSGSEFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~i~l~d~~~~~----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
+.-+++..+++.. ...|.+|.++++. +.+-+..+.||..+++-...+++++. .-+++||......-..+.
T Consensus 179 ~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~----e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 179 LRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS----EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC----ceEEEEcCCCcceeeeec
Confidence 9999988333222 3488999887554 22336778899999986663444442 269999988665545555
Q ss_pred CCCceEEEECCCCCEEEEEE
Q 013884 279 AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 279 ~~~~~~~~wspdg~~l~tas 298 (434)
-..--.+-|..-|..|++..
T Consensus 253 ~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 253 VGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred CCCeEEEEEEecCEEEEEEc
Confidence 22223355555566655543
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00051 Score=70.04 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=80.7
Q ss_pred EEEECcCCCEEEEEEc--cCCCeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884 200 DVQWSYSGSEFAVVYG--FMPASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 200 ~~~wspdg~~~av~~g--~~~~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
-..|+|....|+|.+= ...|.++||--.+++..+.. .-.+.+++|+|..-.|+.+- ..|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeeee
Confidence 4679999999998642 24468999966666554442 33456799999765555543 448999999888765544
Q ss_pred eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cce
Q 013884 277 TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL 318 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~ 318 (434)
...| .+..+.|||||..++|+.. -+.+.+|.++ |+.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI 136 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence 4434 5556999999999999988 8899999986 653
No 325
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.34 E-value=0.18 Score=49.28 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=58.9
Q ss_pred ccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCC
Q 013884 215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPD 290 (434)
Q Consensus 215 g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspd 290 (434)
+..++.+..||.+ ++.+............ .++..+++++ .+|.|..+|..+++.+..... . ...... ..
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~ 319 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPA--VV 319 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCE--EE
Confidence 3446789999985 3444433222222222 2456666665 558999999999987765532 1 111111 24
Q ss_pred CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 291 g~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|.+|++++. |+.+.++|. +|+++.+.
T Consensus 320 g~~l~~~~~------~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 320 GGYLVVGDF------EGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCEEEEEeC------CCEEEEEECCCCCEEEEE
Confidence 678888888 999999998 57766543
No 326
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.12 Score=48.64 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=72.3
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--------eeEEEc--CCcCeeEEEEC
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL--GSGPYNTVRWN 245 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--------~~~~~~--~~~~~~~i~~s 245 (434)
.||.++..+.. ..+..+.-..-+.++||||++.|.++ -...+.+.-|++.. .....+ +.+.--.++.-
T Consensus 144 ~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 144 SLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred eEEEEcCCCCE-EEeecCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 58888754432 22222112233689999999988873 55567888876641 111111 23444456666
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE-CCCCCEEEEEEc
Q 013884 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w-spdg~~l~tas~ 299 (434)
-+|.+.+.+..+. +.|.+|+.+ ++++..+.-+ .++.++| .|+.+.|...+.
T Consensus 222 adG~lw~~a~~~g--~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 222 ADGNLWVAAVWGG--GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCEEEecccCC--ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 6777765443221 389999988 8888777665 5555666 577777776666
No 327
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.26 E-value=0.2 Score=49.01 Aligned_cols=92 Identities=10% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013884 206 SGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
++..+++ +..++.+..+|.. ++.+... ......+... .|..|++++ .+|.|+++|..+++.+..+..+.
T Consensus 278 ~~~~vyv--~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 278 DDNRLYV--TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred eCCEEEE--ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCC
Confidence 3455554 4467899999985 4444333 1111222222 466777776 56899999999999998877543
Q ss_pred --ceE-EEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 282 --SVT-SEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 282 --~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
+.. .... + ..|+.++. |+.|..|
T Consensus 351 ~~~~~sp~~~-~-~~l~v~~~------dG~l~~~ 376 (377)
T TIGR03300 351 SGIASPPVVV-G-DGLLVQTR------DGDLYAF 376 (377)
T ss_pred CccccCCEEE-C-CEEEEEeC------CceEEEe
Confidence 111 2222 3 35777777 8877765
No 328
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0062 Score=55.01 Aligned_cols=129 Identities=18% Similarity=0.313 Sum_probs=85.6
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccee-EEEcC----CcCeeEEEECCCCCeEEEE--ecCCCCCeEEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRP-ILELG----SGPYNTVRWNPKGKFLCLA--GFGNLPGDMAFW 266 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~-~~~~~----~~~~~~i~~sP~g~~l~~~--~~~~~~g~i~iw 266 (434)
....|+++++|....-++ ....|+ -..+||..+.. ...+. ....--=.|||||++|... ++++.+|.|-||
T Consensus 67 paR~Hgi~~~p~~~rava-fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 67 PARGHGIAFHPALPRAVA-FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred ccccCCeecCCCCcceEE-EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 567789999997765443 356677 46778886432 22221 1111224699999999875 455678999999
Q ss_pred EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcC-------Cc--ee---eCCcEEEEe-ecCceeeeeec
Q 013884 267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTA-------PR--LQ---IDNGIKIFH-HNGSLFFKKMF 324 (434)
Q Consensus 267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~-------~r--l~---~D~~i~iw~-~~g~~~~~~~~ 324 (434)
|...+ ..+..+..+ ..-.+.|.+||+.++.+... -| |+ |.-++.+-| .+|.++.+...
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 98754 677777776 44459999999999987531 11 22 334667777 68887766533
No 329
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.12 E-value=0.011 Score=53.92 Aligned_cols=235 Identities=11% Similarity=0.131 Sum_probs=122.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-Cce-------ee--------eee-cCCeeEEEEeCCCCC-eEEEEe
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-KGI-------LY--------RLR-VPGVAAFEVSKAPGS-HVAVFV 110 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-~~~-------~~--------~~~-~~~v~~~~~sp~~~~-~ia~~~ 110 (434)
+.++++.|-.-|.||+++. +|.|.+|.-.... +.. .. .+. .+.|..+.|-.+.+. .+.+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl-- 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL-- 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE--
Confidence 5567889999999999995 5689888754321 100 00 111 125667777655332 2222
Q ss_pred cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884 111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190 (434)
Q Consensus 111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v 190 (434)
.+.+.++++|.+-... -+.+++-.... .+. +|.|-.+ +++..-...+. .+-. .++ -...+++
T Consensus 105 ---stNdktiKlWKiyekn-lk~va~nnls~----~~~-~~~~g~~---~s~~~l~lprl--s~hd-~ii---aa~p~rv 166 (460)
T COG5170 105 ---STNDKTIKLWKIYEKN-LKVVAENNLSD----SFH-SPMGGPL---TSTKELLLPRL--SEHD-EII---AAKPCRV 166 (460)
T ss_pred ---ecCCceeeeeeeeccc-chhhhcccccc----ccc-cccCCCc---CCHHHhhcccc--cccc-eEE---Eecccee
Confidence 1445689999986521 12222211110 111 2222111 00000000000 0000 000 0112222
Q ss_pred e-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcC-------CcCeeEEEECCCCCeEEEEecCC
Q 013884 191 P-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 191 ~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
- -.+...|+++.+..|...|. ...+=+|.+|++. +-.+.++. +.-+++..|+|.-..+..-+.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~l---SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-- 241 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLL---SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-- 241 (460)
T ss_pred ccccceeEeeeeeecCchheee---eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--
Confidence 2 12355678899988776666 3345689999875 22233331 234678889997654433222
Q ss_pred CCCeEEEEEccCC------EEEE--EeeC----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 259 LPGDMAFWDYVDG------KQLG--TTRA----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 259 ~~g~i~iwd~~~~------~~i~--~~~~----------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
..|+|++-|++.. +.+. .+.+ ..++.+.||+.||||++-.. .+++|||++-
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvnm 310 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVNM 310 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEeccc
Confidence 4589999998732 1110 0010 14456999999999998764 8999999843
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0052 Score=61.11 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=66.9
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~-~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
..|.-+.|+|.-..+|. +...+.+.++.+....+.++ +...+. +++|.|||++|++|= .+|+|.+.|++++.
T Consensus 21 ~~i~~~ewnP~~dLiA~--~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIAT--RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhhe--eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence 46778999999888985 56678888888776666666 455565 999999999999886 55999999999987
Q ss_pred EEEEeeC---CCceEEEEC
Q 013884 273 QLGTTRA---ECSVTSEWS 288 (434)
Q Consensus 273 ~i~~~~~---~~~~~~~ws 288 (434)
.+..... ..++..-|+
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 7765322 144446665
No 331
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.81 E-value=0.046 Score=54.46 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=86.8
Q ss_pred CCeeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEE
Q 013884 52 WPSIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 52 ~~~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~ 124 (434)
+..++|+.-.+.+.+. .++++++=|. ..-..++.|..+.|+|-.. .++|+ .....|.+|.
T Consensus 22 vhGlaWTDGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWq 88 (671)
T PF15390_consen 22 VHGLAWTDGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQ 88 (671)
T ss_pred ccceEecCCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEE------eccceEEEEE
Confidence 3368898444444443 3455554331 1234467799999999632 24444 2234789999
Q ss_pred cCCCC--CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCC
Q 013884 125 CGKDL--QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 197 (434)
Q Consensus 125 ~~~~~--~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~ 197 (434)
+--.. ..+.+...+- +..-.-...|+|....|.+++..|+. -++.+..+.. ...+.+...|.
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS----------V~~sV~~d~s-rVkaDi~~~G~ 157 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS----------VLPSVHCDSS-RVKADIKTSGL 157 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee----------EeeeeeeCCc-eEEEeccCCce
Confidence 85210 0222221111 11111234699999988888765431 1344443333 34455666899
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~ 226 (434)
||+.+|.+||.+++|..|+. =.-++||-
T Consensus 158 IhCACWT~DG~RLVVAvGSs-LHSyiWd~ 185 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVGSS-LHSYIWDS 185 (671)
T ss_pred EEEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence 99999999999999987762 25567774
No 332
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.81 E-value=0.16 Score=46.63 Aligned_cols=143 Identities=17% Similarity=0.279 Sum_probs=85.2
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
......++++|+.++++... + +...|+.....+..... + ....+....|+++|...++..+ +....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~--~-------~~~~L~~~~~~~~~~~~--~-~g~~l~~PS~d~~g~~W~v~~~--~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG--D-------GGRSLYVGPAGGPVRPV--L-TGGSLTRPSWDPDGWVWTVDDG--SGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEc--C-------CCCEEEEEcCCCcceee--c-cCCccccccccCCCCEEEEEcC--CCceE
Confidence 45678899999988876511 1 23346665544332111 1 2347788999999877775433 33334
Q ss_pred EE-e-ccc--eeE-EEcC-C-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC--EEE----EEe--eCCCceE
Q 013884 223 IF-N-KKC--RPI-LELG-S-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT 284 (434)
Q Consensus 223 l~-d-~~~--~~~-~~~~-~-~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~--~~i----~~~--~~~~~~~ 284 (434)
++ + ..+ ..+ .... . +.|..+.+||||..+++...+...+.|++--+. .+ ..+ ... ....++.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 33 2 222 111 1121 2 289999999999988887654445788876543 22 111 111 1235667
Q ss_pred EEECCCCCEEEEEEc
Q 013884 285 SEWSPDGRYFMTATT 299 (434)
Q Consensus 285 ~~wspdg~~l~tas~ 299 (434)
++|.+++..++.+..
T Consensus 171 v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRS 185 (253)
T ss_pred eeecCCCEEEEEeCC
Confidence 999999998777765
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.66 Score=45.44 Aligned_cols=283 Identities=13% Similarity=0.149 Sum_probs=161.8
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCC
Q 013884 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAP 102 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~ 102 (434)
++.+++..+......+... ..+..+...+++..+.... .+.+.+.+.. ... ........ .-..+.+++.+
T Consensus 12 ~~~v~~~~~~~~~~~~~~~----~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~-~~~~~~~g~~~p~~i~v~~~~ 85 (381)
T COG3391 12 DVSVINTGTNKVTAAISLG----RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT-VTQSLSVGGVYPAGVAVNPAG 85 (381)
T ss_pred ceEEEeecccEEEEEeecC----CCCceeEEcCccCEEEEEeecCceeeecccc-cce-eeeeccCCCccccceeeCCCC
Confidence 3777777666655555443 2444778889885554442 3344444433 111 11111111 12344555553
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
..... . ......|.+.+... ...+....... .-..+.++++|+.+.+.-... +...+..++.
T Consensus 86 ~~vyv---~--~~~~~~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~---------~~~~vsvid~ 147 (381)
T COG3391 86 NKVYV---T--TGDSNTVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN---------GNNTVSVIDA 147 (381)
T ss_pred CeEEE---e--cCCCCeEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEeccc---------CCceEEEEeC
Confidence 32222 1 12245777777655 33333333332 556889999999887743211 2223445544
Q ss_pred CCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE------cCC-cCeeEEEECCCCCeEEEE
Q 013884 183 DGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGS-GPYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 183 ~~~~~~~-v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~------~~~-~~~~~i~~sP~g~~l~~~ 254 (434)
....... ++.. ..| ..++++|+|..+.+. ...++.+.++|.+...+.. ... ..-..+.++|+|.++.+.
T Consensus 148 ~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~-~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 148 ATNKVTATIPVG-NTP-TGVAVDPDGNKVYVT-NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred CCCeEEEEEecC-CCc-ceEEECCCCCeEEEE-ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 3332211 2222 235 899999999988875 4557799999987766653 211 122568999999988887
Q ss_pred ecCCCCCeEEEEEccCCEEEEE-ee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec----c
Q 013884 255 GFGNLPGDMAFWDYVDGKQLGT-TR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF----D 325 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~-~~-~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~--~~----~ 325 (434)
...+.++.+...|..++..... .. .. ....+..+|+|.++.++... .+.+.+-|.....+... .. .
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V~vid~~~~~v~~~~~~~~~~~~ 299 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTVSVIDGATDRVVKTGPTGNEALG 299 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeEEEEeCCCCceeeeecccccccc
Confidence 6555557899999998876654 22 22 34568999999999998763 47777777654333321 11 1
Q ss_pred cceeeEEEcCCCCCCC
Q 013884 326 KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~ 341 (434)
..+.+.+.+.......
T Consensus 300 ~~~~~~~~~~~~~~~~ 315 (381)
T COG3391 300 EPVSIAISPLYDTNYV 315 (381)
T ss_pred cceeccceeecccccc
Confidence 3556666655444333
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.022 Score=58.31 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=78.8
Q ss_pred CcCCCEEEEEEccCCCeEEEEecc-cee--EEEcCCcCeeEEEECCC-----CCeEEEEecCCCCCeEEEEEcc---CCE
Q 013884 204 SYSGSEFAVVYGFMPASATIFNKK-CRP--ILELGSGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGK 272 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~d~~-~~~--~~~~~~~~~~~i~~sP~-----g~~l~~~~~~~~~g~i~iwd~~---~~~ 272 (434)
.-+|.+++ ++++||++.|..+- ... ..+| ..++++|+++|| .+.+++|| ..| +.++..+ +..
T Consensus 80 ~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 80 ILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKD 152 (846)
T ss_pred ccCCceEE--EecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCcc
Confidence 44788999 68899999987663 222 3344 578999999998 55777787 667 7777644 223
Q ss_pred EEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec------c--cceeeEEEcCCCCCC
Q 013884 273 QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF------D--KLFQAEWKPVSPDKF 340 (434)
Q Consensus 273 ~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~------~--~~~~~~w~p~~~~~~ 340 (434)
.+..... ..+..+.|. |.+||.+. |-+|+|+|...+ .+-..++ + -.+.+.|++...-++
T Consensus 153 ~v~l~~~eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred ceeeecCccceEEEEec--CcEEEEec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 3322222 255568885 66888887 789999998443 3333222 1 245777887654433
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.70 E-value=0.51 Score=43.74 Aligned_cols=231 Identities=12% Similarity=0.155 Sum_probs=121.3
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee---
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY--- 86 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~--- 86 (434)
.|+.|+.+. +++ |.++++............ ..+..+..-++-+.|+...|+.|.+|++.........
T Consensus 6 ~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGT-----EDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEE-----CCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence 467777766 566 999998433333333222 2355777788888888888899999998775432211
Q ss_pred ----------ee-ecCCeeEEE--EeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-CceeeeeecccceeEEEECC
Q 013884 87 ----------RL-RVPGVAAFE--VSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 87 ----------~~-~~~~v~~~~--~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-~~i~~~~~~~~~~~~~~ws~ 151 (434)
.+ ...++..++ -...+...+++.... ++.+|...... .. ........ ......+.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~- 147 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL- 147 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCcccccceeEEEEc-CCCcEEEEEe-
Confidence 11 123455555 112222344443322 67777775421 01 22222222 3455677787
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCC-----------CCCeEEEEECcCCCEEEEEEccCCC
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRK-----------EGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~-----------~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
++.+++.... ..+.++....... ...... ..++.-+..+ + ++|.+++. .
T Consensus 148 -~~~i~v~~~~-------------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~Ll~~~---~ 208 (275)
T PF00780_consen 148 -GNKICVGTSK-------------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D-NEFLLCYD---N 208 (275)
T ss_pred -CCEEEEEeCC-------------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C-ceEEEEec---c
Confidence 5666664321 1233333321111 111111 1244444443 3 35665542 2
Q ss_pred eEEEEeccceeEE----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE
Q 013884 220 SATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 284 (434)
Q Consensus 220 ~i~l~d~~~~~~~----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~ 284 (434)
...+.|..+.... .+...+..-....| ||+..+. ..|+||++.+++.+..+..+....
T Consensus 209 ~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~~----~~iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 209 IGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFSS----NSIEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred eEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEECC----CEEEEEECcCCcEEEEEECCCEEE
Confidence 4445566654433 33444443333343 6665442 369999999999999888765443
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.73 Score=45.61 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
..|+||+.. +..+.+..+-....+.|.|+.+...+++.
T Consensus 61 ~~I~iys~s----G~ll~~i~w~~~~iv~~~wt~~e~LvvV~ 98 (410)
T PF04841_consen 61 NSIQIYSSS----GKLLSSIPWDSGRIVGMGWTDDEELVVVQ 98 (410)
T ss_pred cEEEEECCC----CCEeEEEEECCCCEEEEEECCCCeEEEEE
Confidence 368888875 46777777777889999999976554443
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.01 Score=59.09 Aligned_cols=89 Identities=17% Similarity=0.359 Sum_probs=69.1
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.+.-+.|+|.=.+||++. ..|.|-+.-.+ ...+.++.-+ +++ .++|.|||+.|++|-. ||+|+|-|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHDV 91 (665)
T ss_pred ceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEEc
Confidence 456689999999999987 56789888776 6677777633 666 6999999999999999 999999999
Q ss_pred -cCceeeeee---cccceeeEEEcCC
Q 013884 315 -NGSLFFKKM---FDKLFQAEWKPVS 336 (434)
Q Consensus 315 -~g~~~~~~~---~~~~~~~~w~p~~ 336 (434)
.|..+.... ...+....|.|..
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~~~ 117 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDRIE 117 (665)
T ss_pred cCCCceeccccccccchheeecccce
Confidence 445555532 2467888887654
No 338
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.54 Score=43.17 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=93.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|.|+|+.+.|.+.. ....-.||=..+|+.+++...... ..-..+.|..+++|+++-. +.++.++.+...
T Consensus 88 vS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 88 VSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEeccccc--CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 67899999999999887 567778887789999998876543 2233678999999888763 567777776543
Q ss_pred CCc---eeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-----CCCceeeeeeccccee
Q 013884 81 PKG---ILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-----QSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~---~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-----~~~~i~~~~~~~~~~~ 145 (434)
... ...++. -.+...++|.|... .+-+ ..| -.|-.|..|+..... ...+-..+.++-.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~-aKE--r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFV-AKE--RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEE-EEc--cCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 211 011222 23567889999843 3322 222 234344444421100 0223334456666778
Q ss_pred EEEECCCCCeEEEEE
Q 013884 146 QLNWNRGSTGLLAVA 160 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~ 160 (434)
.+.+++....|+++.
T Consensus 237 gl~~~~~~~~LLVLS 251 (316)
T COG3204 237 GLEFNAITNSLLVLS 251 (316)
T ss_pred cceecCCCCcEEEEe
Confidence 889998888888874
No 339
>PRK10115 protease 2; Provisional
Probab=96.62 E-value=1.2 Score=47.12 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=112.7
Q ss_pred CCeeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEecCCC-CCCceEEEE
Q 013884 52 WPSIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFVPESK-GSPASVQIY 123 (434)
Q Consensus 52 ~~~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~~~~~-~~~~~v~i~ 123 (434)
+..+.|||||++|+.+.+ + +|++.|+.+... ..-.+.++ ..++|++++. .+.+...... ..+..|..+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---l~~~i~~~~~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---YPELLDNVEPSFVWANDSW-TFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---CCccccCcceEEEEeeCCC-EEEEEEecCCCCCCCEEEEE
Confidence 335689999999998843 1 688888865431 11112222 3589999854 3333222222 355678888
Q ss_pred EcCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eC-CCceeeeecCCCCCeE
Q 013884 124 ACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TD-GTHEGLVPLRKEGPVH 199 (434)
Q Consensus 124 ~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~-~~~~~~v~l~~~~~i~ 199 (434)
++.+.. .+............ +...-+.+|+++++......+ + .++++. .. +.....++.. .+...
T Consensus 205 ~lgt~~-~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~-------~--~~~l~~~~~~~~~~~~~~~~~-~~~~~ 273 (686)
T PRK10115 205 TIGTPA-SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT-------S--EVLLLDAELADAEPFVFLPRR-KDHEY 273 (686)
T ss_pred ECCCCh-hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc-------c--cEEEEECcCCCCCceEEEECC-CCCEE
Confidence 886621 01111111111111 222334588888744332211 1 133333 21 2211222222 22223
Q ss_pred EEEECcCCCEEEEEEccCCC--eEEEEeccc-e---eEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 200 DVQWSYSGSEFAVVYGFMPA--SATIFNKKC-R---PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 200 ~~~wspdg~~~av~~g~~~~--~i~l~d~~~-~---~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.+. ..+..|.+.+..... .+...++.. . .+..-. ...+..+.++ +++|++....+....+.++|..+++
T Consensus 274 ~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 274 SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 332 234566665543222 343344431 1 122111 2356667776 5566666554434456777765443
Q ss_pred EEEEe-eCC-CceEEEEC--CCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 273 QLGTT-RAE-CSVTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 273 ~i~~~-~~~-~~~~~~ws--pdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
..... ..+ .+..+.++ +++..++...+++.. -..+..+|..+
T Consensus 350 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~~ 395 (686)
T PRK10115 350 VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTT--PDTLFELDMDT 395 (686)
T ss_pred eEEecCCCCceEeeecccCCCCCceEEEEEecCCC--CCEEEEEECCC
Confidence 32211 222 22224455 555544433332222 45666677654
No 340
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.54 E-value=0.63 Score=42.75 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=81.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe-CCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD-TTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~-~~~ 79 (434)
+.+.+.||||+.++.... ......|.++... ......... .....+.|++++...+... +...+++. ..+
T Consensus 26 ~~s~AvS~dg~~~A~v~~--~~~~~~L~~~~~~--~~~~~~~~g----~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSE--GDGGRSLYVGPAG--GPVRPVLTG----GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ccceEECCCCCeEEEEEE--cCCCCEEEEEcCC--CcceeeccC----CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 467899999998887761 1123566666543 322332211 3455789999988777664 34555553 222
Q ss_pred CCCceeeeeecC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC------CceeeeeecccceeEEEE
Q 013884 80 FPKGILYRLRVP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS------QPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~~~~~~~~~~~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~------~~i~~~~~~~~~~~~~~w 149 (434)
.. .....+... .|..+.+||+ +..+++......+ +.|.+-.+.....+ .++............+.|
T Consensus 98 g~-~~~~~v~~~~~~~~I~~l~vSpD-G~RvA~v~~~~~~--~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 98 GT-GEPVEVDWPGLRGRITALRVSPD-GTRVAVVVEDGGG--GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred Cc-ceeEEecccccCCceEEEEECCC-CcEEEEEEecCCC--CeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 22 122222222 6899999999 6667666543322 56666555432112 111122122346679999
Q ss_pred CCCCCeEEEEE
Q 013884 150 NRGSTGLLAVA 160 (434)
Q Consensus 150 s~~G~~l~~~~ 160 (434)
.++++ |++++
T Consensus 174 ~~~~~-L~V~~ 183 (253)
T PF10647_consen 174 SDDST-LVVLG 183 (253)
T ss_pred cCCCE-EEEEe
Confidence 99987 44443
No 341
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.54 E-value=0.093 Score=46.95 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=56.1
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEE--EcCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccC
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PIL--ELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~--~~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.|++++-+|.-+.+.+ +|..++.+.+||.+.. ++. ..|+.+++.+-|+| ++..|++++ .+|.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEE-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence 4888999998777766 5888999999999743 222 23889999999999 567888888 678999999875
No 342
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.018 Score=56.35 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEcCCcCeeEEE-ECCCCCeEEEEecCCCCCeEEE-EEccCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELGSGPYNTVR-WNPKGKFLCLAGFGNLPGDMAF-WDYVDG 271 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~~~~~~~~i~-~sP~g~~l~~~~~~~~~g~i~i-wd~~~~ 271 (434)
++.+.+++..|.|+.+++ +-..|.+.+.|.+... +.+...-...-+. -.|..+.|+... ++..+.+ |...++
T Consensus 876 na~~R~iaVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~sa---ldHslaVnWhaldg 950 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSA---LDHSLAVNWHALDG 950 (1034)
T ss_pred chheeEEEeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhc---ccceeEeeehhcCC
Confidence 466789999999999994 7778899999987554 3333211111111 135566666665 4558888 887776
Q ss_pred EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
......+-+ ...++ .-.-|..|+++.. .+-+.+|.-.+.+.
T Consensus 951 imh~q~kpppepahf-lqsvgpSLV~a~~------Gn~lgVYad~a~~h 992 (1034)
T KOG4190|consen 951 IMHLQDKPPPEPAHF-LQSVGPSLVTAQN------GNILGVYADSAELH 992 (1034)
T ss_pred eeeeccCCCCcchhh-hhccCceeEEecc------CcEEEEEecchhhh
Confidence 544333322 11111 1224677899988 77788887655543
No 343
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.033 Score=56.57 Aligned_cols=116 Identities=16% Similarity=0.303 Sum_probs=76.6
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
.+...|.++.|.|...-+.. ++..|..+..||++. .++..+ -......+.|+-..-.++..+.|+ .|.+||+
T Consensus 112 ghsraitd~n~~~q~pdVla-tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~---~i~vwd~ 187 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLA-TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN---DIFVWDL 187 (1081)
T ss_pred cCccceeccccCCCCCccee-eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC---ceEEEec
Confidence 34678899999987654332 577788999999974 344444 234557899987655555556566 8999998
Q ss_pred cCC-EEEEEeeCCCce--EEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 269 VDG-KQLGTTRAECSV--TSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 269 ~~~-~~i~~~~~~~~~--~~~wspd-g~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
+.+ ..+..++++-.. .++|..- -..+++.+. |++++.|+|+...
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~------d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN------DGTVKFWDYSKST 235 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCC------CCceeeecccccc
Confidence 866 566666664221 2444322 224555566 9999999996543
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.64 Score=42.37 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=89.7
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
+...+.|+|+...|.++ .|... .|+.++..|.-...+++...+..-++++.-++ .|++ +...++.+.
T Consensus 23 e~SGLTy~pd~~tLfaV----~d~~~-------~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl-~~Er~~~L~ 89 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAV----QDEPG-------EIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVL-SEERDQRLY 89 (248)
T ss_dssp -EEEEEEETTTTEEEEE----ETTTT-------EEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEE-EETTTTEEE
T ss_pred CccccEEcCCCCeEEEE----ECCCC-------EEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEE-EEcCCCcEE
Confidence 45689999998887665 33333 36777777777777888777788899998665 5555 455678888
Q ss_pred EEecc--c-----ee--EEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEE-EEEe--------
Q 013884 223 IFNKK--C-----RP--ILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGTT-------- 277 (434)
Q Consensus 223 l~d~~--~-----~~--~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~-i~~~-------- 277 (434)
++++. + .. ..++ +...+..++|.|.++.|+++--. ....|+-++. ..... +...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccceeeccccccccccc
Confidence 88762 1 11 1122 23446789999998877776422 2223333433 11111 1111
Q ss_pred eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee
Q 013884 278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM 323 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~ 323 (434)
.....+.++++|...+|+.-+.- ...+.+.|.+|+.+....
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~e-----s~~l~~~d~~G~~~~~~~ 209 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDE-----SRLLLELDRQGRVVSSLS 209 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETT-----TTEEEEE-TT--EEEEEE
T ss_pred eeccccceEEcCCCCeEEEEECC-----CCeEEEECCCCCEEEEEE
Confidence 11255668999987666666653 677888998898766543
No 345
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.028 Score=53.90 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=80.4
Q ss_pred EccCCCeEEEEeccce--e---EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC------CEEEEEee----
Q 013884 214 YGFMPASATIFNKKCR--P---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------GKQLGTTR---- 278 (434)
Q Consensus 214 ~g~~~~~i~l~d~~~~--~---~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~---- 278 (434)
+....+.+.++|-.+. + ...+|..++..+.++|-|..+++.. ..|.|+-|.... .+....+.
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCccccccccccccch
Confidence 5667789999987532 2 2345899999999999999888766 568999998762 11111111
Q ss_pred ------C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884 279 ------A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 279 ------~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
+ ...+++++||+|..+.+-.. |..|+++.+.+..+.+.--+.+......|..+.-+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred hhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 1 14566999999999999888 999999998655443332233444455555544333
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.011 Score=55.78 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 235 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
+...|..++|||+.+ ++.+++.|+ +|.|.|+++..++..+..+ .+..|+|.-|.++++.|+.. .|.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~-----nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQ-----NGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCc---eEEEEecccceeeeheeccCCceeeeeccCCcceeEEecc-----CceEEEE
Confidence 566788999999998 677788666 9999999999888888777 66679999999998888875 7889999
Q ss_pred eecC
Q 013884 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
|+..
T Consensus 264 D~R~ 267 (463)
T KOG1645|consen 264 DMRQ 267 (463)
T ss_pred EccC
Confidence 9943
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.4 Score=46.16 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=118.3
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C---C--eEEEEeCC
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T---N--EIQFFDTT 78 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~---~--~i~v~~~~ 78 (434)
.||+.+..+|.++ .++.|.+.+ ..-+.++.|..... ..+ ..-|.-++ .+|++.+ | | .|+||+++
T Consensus 30 c~~s~~~~vvigt-----~~G~V~~Ln-~s~~~~~~fqa~~~--siv-~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 30 CCSSSTGSVVIGT-----ADGRVVILN-SSFQLIRGFQAYEQ--SIV-QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EEcCCCceEEEee-----ccccEEEec-ccceeeehheecch--hhh-hHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4777777777776 677777766 33444577766542 224 34456666 4666542 2 2 69999986
Q ss_pred CCCCc---eee---eee---cC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccce
Q 013884 79 DFPKG---ILY---RLR---VP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCST 144 (434)
Q Consensus 79 ~~~~~---~~~---~~~---~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~ 144 (434)
..... ... ++. .+ .+..+++|-+ -..+++- -..|.|..+.-.-.. .+....-....+..+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~G-----f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCG-----FTNGLVICYKGDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEE-----ecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence 53211 111 111 11 2344555554 2333321 122344444321100 011111111235677
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l 223 (434)
+.+.+..+|+.+++++.+. ...+|.+. |.......+++ ..++++..+++...+|+++ + +.-+.+
T Consensus 175 TgL~~~~d~~s~lFv~Tt~----------~V~~y~l~--gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~f 239 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTE----------QVMLYSLS--GRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYF 239 (933)
T ss_pred eeeEEecCCceeEEEEecc----------eeEEEEec--CCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEE
Confidence 8889999999876655442 11234443 33222333443 5678888898876667753 3 348999
Q ss_pred Eeccce-eEEEcCCcCeeEEEECCCCCeEEEEe
Q 013884 224 FNKKCR-PILELGSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 224 ~d~~~~-~~~~~~~~~~~~i~~sP~g~~l~~~~ 255 (434)
||..+. +-+.|+-+...-+.|...|.+|++..
T Consensus 240 Y~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred EcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 998643 44566656666677777777777653
No 348
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.24 E-value=1.2 Score=42.72 Aligned_cols=242 Identities=12% Similarity=0.151 Sum_probs=111.0
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC--CCCeE-EEEec-CCCCCCceE
Q 013884 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA--PGSHV-AVFVP-ESKGSPASV 120 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~--~~~~i-a~~~~-~~~~~~~~v 120 (434)
.| .++|.|||+++++-..+.|++++...........+ ...++..++++|+ .+..+ .++.. .........
T Consensus 4 P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 45 79999999999988889999999322111111111 1236788999995 12232 33332 122223333
Q ss_pred EEE--EcCCCC----CCCceeee-ee---cccceeEEEECCCCCeEEEEEEeccc----ccCceeecceeEEEEeeCCCc
Q 013884 121 QIY--ACGKDL----QSQPLARR-SF---FRCSTVQLNWNRGSTGLLAVAQSDVD----KTNQSYYGESKLNYLTTDGTH 186 (434)
Q Consensus 121 ~i~--~~~~~~----~~~~i~~~-~~---~~~~~~~~~ws~~G~~l~~~~~~~~d----~~~~~~~g~~~l~~l~~~~~~ 186 (434)
+|. .+.... ..+.+... .. .......|.|.||| .|.+.+....+ .......| .+..++..+..
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G--~ilri~~dG~~ 159 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRG--KILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTT--EEEEEETTSSB
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccc--eEEEecccCcC
Confidence 443 333210 01111111 11 12334569999999 55544322222 11112223 35666655531
Q ss_pred eeeeecC----CCCCe--------EEEEECcC-CCEEEEEEccCCC--eEEEEec---------c------c--------
Q 013884 187 EGLVPLR----KEGPV--------HDVQWSYS-GSEFAVVYGFMPA--SATIFNK---------K------C-------- 228 (434)
Q Consensus 187 ~~~v~l~----~~~~i--------~~~~wspd-g~~~av~~g~~~~--~i~l~d~---------~------~-------- 228 (434)
....+.- ....| ..++|.|. |+.++.-.|. +. .|.+..- . +
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~-~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP-DGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S-SSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC-CCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 1101110 01222 47999998 7766653332 22 3333210 0 0
Q ss_pred -----eeEEEc-CCcCeeEEEECCCCC------eEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCC
Q 013884 229 -----RPILEL-GSGPYNTVRWNPKGK------FLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPD 290 (434)
Q Consensus 229 -----~~~~~~-~~~~~~~i~~sP~g~------~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspd 290 (434)
.++..+ +......+.|-.... .++++..+ .+.|...+++....+... ... .+..+++.||
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 112222 223334455543322 23445543 368888887755322211 122 4677999999
Q ss_pred CCEEEEEEc
Q 013884 291 GRYFMTATT 299 (434)
Q Consensus 291 g~~l~tas~ 299 (434)
|..+++...
T Consensus 317 G~Lyv~~d~ 325 (331)
T PF07995_consen 317 GALYVSDDS 325 (331)
T ss_dssp SEEEEEE-T
T ss_pred CeEEEEECC
Confidence 998888776
No 349
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.19 E-value=0.9 Score=40.84 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcC----------e-eEEEECCCCCeEEEEecCCCCCe-EEEEEccCC
Q 013884 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGD-MAFWDYVDG 271 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~----------~-~~i~~sP~g~~l~~~~~~~~~g~-i~iwd~~~~ 271 (434)
+..+++ +..++.+..+|.+ ++.+... .... . ..+.++ +| .+++++ .+|. +.+ |..++
T Consensus 122 ~~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 122 GDRLYV--GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATG 193 (238)
T ss_dssp TTEEEE--EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTT
T ss_pred cCEEEE--EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCC
Confidence 555553 4446788888875 4444433 2111 1 223333 45 555554 2344 555 99999
Q ss_pred EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013884 272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 319 (434)
Q Consensus 272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~ 319 (434)
+.+....... ......+++..|+.++. |+.+.+||. +|+.+
T Consensus 194 ~~~w~~~~~~-~~~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 EKLWSKPISG-IYSLPSVDGGTLYVTSS------DGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECSS--ECECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred CEEEEecCCC-ccCCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence 8665443222 22225678888888887 999999998 55543
No 350
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.03 Score=51.86 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=58.7
Q ss_pred eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce----eEEEcCCcCeeEEEE-----CCCCCeEEEEec
Q 013884 187 EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRW-----NPKGKFLCLAGF 256 (434)
Q Consensus 187 ~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~----~~~~~~~~~~~~i~~-----sP~g~~l~~~~~ 256 (434)
.+...+-++..|.+++.-. ++..+. +.+|+++|++||++.. .+.+. .+++|..++ .|....|+++|.
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~Lm--aS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLM--ASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEe--eccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccC
Confidence 3444455566777766555 344444 5789999999999621 23333 455665554 445567777874
Q ss_pred CCCCCeEEEEEccCCEEEEEeeCC
Q 013884 257 GNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
| -..+||.++++.++.++.-+
T Consensus 367 D---cytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 D---CYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred e---eEEEEEecccCceeeccCCC
Confidence 4 48999999999999887665
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.15 Score=51.81 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=89.5
Q ss_pred eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
-+++..++|++.++ .+.|.+|+-..... ...+. ....+....+|++ +.++|. +++.+.|.++.+...-+.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~-e~lvAa-----gt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV-EYLVAA-----GTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch-hHhhhh-----hcCCceEEeehhhccCCC
Confidence 35667889999985 48999999665322 11111 2223445667776 444442 456678888887662212
Q ss_pred Cceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCceeeeecCCCCCeEEEEECcC
Q 013884 132 QPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 132 ~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~~~~i~~~~wspd 206 (434)
..+....+ |+..++++.|+++|..+.. .|..|+.- +..++.. .......-+...++|-.+....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-----GD~~Gkv~-----~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q- 180 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYS-----GDSQGKVV-----LTELDSRQAFLSKSQEILSEDSEIVQLDYLQ- 180 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEee-----cCCCceEE-----EEEechhhhhccccceeeccCcceEEeeccc-
Confidence 22221122 4567889999999998765 55555532 2333321 0001111122356776666542
Q ss_pred CCEEEEEEccCCCeEEEEeccceeEEEcCCcCee
Q 013884 207 GSEFAVVYGFMPASATIFNKKCRPILELGSGPYN 240 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~ 240 (434)
.++.| +.. -+..+++.+.+.+.++++.++.
T Consensus 181 -~~LLV-Stl--~r~~Lc~tE~eti~QIG~k~R~ 210 (726)
T KOG3621|consen 181 -SYLLV-STL--TRCILCQTEAETITQIGKKPRK 210 (726)
T ss_pred -ceehH-hhh--hhhheeecchhHHHHhcCCCcC
Confidence 23333 222 2567778776666666655444
No 352
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.017 Score=56.58 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=104.1
Q ss_pred CCCceEEEEEcCCCC--CCC--ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee--
Q 013884 115 GSPASVQIYACGKDL--QSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-- 188 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~--~~~--~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-- 188 (434)
..+.+|++|.+.... .+. ...+.+.|+..+..+.+-.+-++++ ++| | .+|+++..-+..-
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~---ScD---------~--giHlWDPFigr~Laq 819 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA---SCD---------G--GIHLWDPFIGRLLAQ 819 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee---ecc---------C--cceeecccccchhHh
Confidence 456789999986421 112 2223344566666666655555432 222 1 2455543322111
Q ss_pred eeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEecc-ceeEEEc-------CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 189 LVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 189 ~v~l~~~~~i~~~~wspd-g~~~av~~g~~~~~i~l~d~~-~~~~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
...-.+++.+..+.--|+ .+.+.+..+.-..++++||.+ |+-+-++ ..+.+.+++..|.|++++.+- .
T Consensus 820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---S 896 (1034)
T KOG4190|consen 820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---S 896 (1034)
T ss_pred hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---c
Confidence 111223455555555455 334443323555699999986 3322222 346678999999999998775 4
Q ss_pred CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE-EeecCce
Q 013884 260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGSL 318 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i-w~~~g~~ 318 (434)
.|.|.+.|.++|+.|....-- +...++ .|..+.|+.... |.++-+ |+.....
T Consensus 897 nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi 951 (1034)
T KOG4190|consen 897 NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI 951 (1034)
T ss_pred CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence 589999999999988755321 111222 466677777766 999999 9874443
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.03 E-value=0.024 Score=33.64 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=24.1
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
.+..+.|+|++.++++++. |+.+++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASD------DGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence 5567999999999999999 99999996
No 354
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.82 E-value=0.51 Score=47.32 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEEECcCC-----CEEEEEEccCCCeEEEEecc------ceeEE----Ec-CCcCe--eEEEECCCCCeEEEEec
Q 013884 195 EGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----EL-GSGPY--NTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 195 ~~~i~~~~wspdg-----~~~av~~g~~~~~i~l~d~~------~~~~~----~~-~~~~~--~~i~~sP~g~~l~~~~~ 256 (434)
-..|+.+.|+|-+ ..+||- .-..|++|-+. .+.+. ++ ..-++ ..+.|+|....|++-..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEe---ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 4578999999953 245542 23489999763 11111 11 11222 24789999998888663
Q ss_pred CCCCCeEEEEEcc--CCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 257 GNLPGDMAFWDYV--DGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 257 ~~~~g~i~iwd~~--~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.. .--++++. +.+....+...+.++ -+|.+||+.|++|-.+ -=.-+|||-..
T Consensus 133 ~d---vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q 187 (671)
T PF15390_consen 133 RD---VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ 187 (671)
T ss_pred Cc---eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence 32 33444543 335555556665555 7899999999998752 12345776533
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.79 E-value=0.023 Score=37.06 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.9
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
.+..++|+|....||.++. ||.|.|+.++|+.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRIW 46 (47)
T ss_pred cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCcc
Confidence 4556999999999999999 999999999887653
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.2 Score=51.67 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=83.2
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-----CcEEEEecCCeEEEEeCCCCCCce
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-----EAVACRMATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-----~~~la~~~~~~i~v~~~~~~~~~~ 84 (434)
+|.|++|++ .|+.|.|-.+-+.+..+++..+ ....+++++|| .+.+++|+...+.++.-.=++...
T Consensus 82 ~Gey~asCS-----~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~ 152 (846)
T KOG2066|consen 82 EGEYVASCS-----DDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD 152 (846)
T ss_pred CCceEEEec-----CCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc
Confidence 699999999 8999999999998887777665 45568899998 566666654337777643222211
Q ss_pred eeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------ceeEEEECCCCCeE
Q 013884 85 LYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------STVQLNWNRGSTGL 156 (434)
Q Consensus 85 ~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------~~~~~~ws~~G~~l 156 (434)
...++ ...|.++.|. +.+|| |..+. -|++|+++. ++.+........ -.+.+.|.++.+ |
T Consensus 153 ~v~l~~~eG~I~~i~W~---g~lIA-Wand~-----Gv~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L 219 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR---GNLIA-WANDD-----GVKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L 219 (846)
T ss_pred ceeeecCccceEEEEec---CcEEE-EecCC-----CcEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCe-E
Confidence 11222 3458888887 34454 44443 368999887 555555444322 225688988754 4
Q ss_pred EEEE
Q 013884 157 LAVA 160 (434)
Q Consensus 157 ~~~~ 160 (434)
++.+
T Consensus 220 VIGW 223 (846)
T KOG2066|consen 220 VIGW 223 (846)
T ss_pred EEec
Confidence 4443
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.57 E-value=0.043 Score=32.41 Aligned_cols=30 Identities=37% Similarity=0.840 Sum_probs=25.7
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
+...++++.|+|+++++++++ .+|.+.+||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence 567889999999999999888 556999996
No 358
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.46 E-value=0.022 Score=50.78 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=57.6
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC--CceEEEECC-CCCEEEEEEcCCceeeCCcEEEE
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~--~~~~~~wsp-dg~~l~tas~~~rl~~D~~i~iw 312 (434)
..+.+++-+|.-+.+++.|. .+|.+-+||.++... +..+.+| .+..+-|+| ++..|+|++. ||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se------dGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE------DGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC------CCcEEEE
Confidence 34888899997776665554 458999999988733 2333444 555689998 5789999999 9999999
Q ss_pred eecCceee
Q 013884 313 HHNGSLFF 320 (434)
Q Consensus 313 ~~~g~~~~ 320 (434)
|-++..+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99987665
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=2.1 Score=39.30 Aligned_cols=232 Identities=14% Similarity=0.138 Sum_probs=123.6
Q ss_pred CCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe--cCCeEEEEeCCCCCCceeeeeecCCee---EEEEeCCCCCeEE
Q 013884 34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM--ATNEIQFFDTTDFPKGILYRLRVPGVA---AFEVSKAPGSHVA 107 (434)
Q Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~---~~~~sp~~~~~ia 107 (434)
+.|+++....... .-..+.|+|-.... ++. =.-...+||........... ..++-. .=.|||++..+.+
T Consensus 56 eaGk~v~~~~lpa----R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYA 130 (366)
T COG3490 56 EAGKIVFATALPA----RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYA 130 (366)
T ss_pred cCCceeeeeeccc----ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEe
Confidence 5677776543321 11257888865433 333 22367888887755432211 111111 1257888533323
Q ss_pred EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE---ec--ccccCcee-ecceeEEEEe
Q 013884 108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ---SD--VDKTNQSY-YGESKLNYLT 181 (434)
Q Consensus 108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~---~~--~d~~~~~~-~g~~~l~~l~ 181 (434)
. -.+....-+.|-||+.... -+.+...+.|...-..+.|.+||..+++.-. +. ...+.... .-+..|.+++
T Consensus 131 T-Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 131 T-ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred e-cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 2 1122344578999998753 5666777778888889999999998776422 11 11110000 1122344555
Q ss_pred -eCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC------eEEEEeccceeEEEcC---------CcCeeEE
Q 013884 182 -TDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA------SATIFNKKCRPILELG---------SGPYNTV 242 (434)
Q Consensus 182 -~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~------~i~l~d~~~~~~~~~~---------~~~~~~i 242 (434)
..|......+|. +.-.|..++.-+||...+-+ .++.. -+-.+ .+++++.-+. ...+-+|
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsi 285 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSI 285 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhhe
Confidence 344333333333 23567888888888766532 22211 11111 1233322221 2345567
Q ss_pred EECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEee
Q 013884 243 RWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 243 ~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
+.+-+..++++.+. || ...+||..++..+....
T Consensus 286 A~n~~~glV~lTSP~GN---~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 286 AANRRDGLVALTSPRGN---RAVIWDAATGAVVSEAA 319 (366)
T ss_pred eecccCCeEEEecCCCC---eEEEEEcCCCcEEeccc
Confidence 88877777766653 44 67789999998776543
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.22 E-value=0.074 Score=53.88 Aligned_cols=109 Identities=11% Similarity=0.166 Sum_probs=75.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 271 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~- 271 (434)
.|.=-+++-+++++++ |..-|.+++|+-.++....+ ..+.+..+..|++..++|.|+ ..|.|.++-++..
T Consensus 35 ~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhccC
Confidence 3444455667888886 66678999998765554433 345667788999988888777 5579999987653
Q ss_pred --E--EEEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 272 --K--QLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 272 --~--~i~~~~~--~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
. .+..... . .++.++||+||..|.+|.. .|.|.+-.++-
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~------~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS------QGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCC------CceEEEEEech
Confidence 1 2222222 2 5667999999999999987 67776666554
No 361
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.05 E-value=0.72 Score=48.47 Aligned_cols=178 Identities=12% Similarity=0.125 Sum_probs=104.3
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 104 (434)
..+...|+.++++.+...... ..+.-+ -.+++++.++. .|+|.+-|..+++.......|...|.++...- +.
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a---~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G--Nl 229 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSA---SGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG--NL 229 (1118)
T ss_pred hheeeeecccceeeeeeeccC---CceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccC--Ce
Confidence 446667888877766554432 234233 34788888884 58999999999887666667777788776652 34
Q ss_pred eEEEEecCC---CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884 105 HVAVFVPES---KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 105 ~ia~~~~~~---~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
.+++-.... .-.+..|++||+.. -+.+.-+.+.... .-+.+.|.=...+++++. +++ ...++
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRm---mral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq-------~q~vd 294 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRM---MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ-------FQFVD 294 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhh---hhccCCcccccCc-hhhhhcccccceEEEEec----ccc-------eeecc
Confidence 444432222 23456899999987 4444444443322 345566654443444332 121 12222
Q ss_pred eCC--Cc-eeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884 182 TDG--TH-EGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 182 ~~~--~~-~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~ 227 (434)
..+ .. .....+.- ...+..+++|++|+.+++ |..++.|.+|--+
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWADR 342 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeecCC
Confidence 111 10 11111111 234899999999999995 8888999999633
No 362
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.95 E-value=0.2 Score=51.67 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=68.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
.|+|-|.|..++|....+.+....|+.+. .+|-.-..|...-.-.+.+..+.|.-....++....|.|++|-..++.-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence 47899999999999844333334566665 34422222211111113344667887888888888899999999886543
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEE
Q 013884 84 ILYRLRVPGVAAFEVSKAPGSHVAV 108 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~ 108 (434)
....+.++++.-+.|+|..+.++.+
T Consensus 330 LK~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 330 LKVERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEeecCCCcceeeeccccCcEEEE
Confidence 3445667889999999987666543
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.91 E-value=0.083 Score=34.41 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=28.4
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
...+.++.|+|...+||++. .+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence 45688999999999999998 6689999988 5443
No 364
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.90 E-value=2.7 Score=37.67 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=45.4
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
..+++.+|++.+ .++.|..||..+|+.+.++..... ... .+ ...++.+++...++.|..+|..+...
T Consensus 32 ~~~~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~--~~~-~~-~~~~~~v~v~~~~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 32 AVPDGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGP--ISG-AP-VVDGGRVYVGTSDGSLYALDAKTGKV 98 (238)
T ss_dssp EEEETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSC--GGS-GE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred EEEeCCEEEEEc-----CCCEEEEEECCCCCEEEEeecccc--ccc-ee-eecccccccccceeeeEecccCCcce
Confidence 344666676666 789999999999999888776321 111 22 33456666556677999999777553
No 365
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.82 E-value=1.3 Score=47.06 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---C--C--eEEEEeCCCCCCceeeeeecC--CeeEE
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---T--N--EIQFFDTTDFPKGILYRLRVP--GVAAF 96 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~--~--~i~v~~~~~~~~~~~~~~~~~--~v~~~ 96 (434)
++|.+-|...+.. +.+.... ...+.++.|||||++||.+. . + .|.+-++..... ...++.++ .|-..
T Consensus 329 ~~L~~~D~dG~n~-~~ve~~~--~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~-~~vkl~ve~aaiprw 404 (912)
T TIGR02171 329 GNLAYIDYTKGAS-RAVEIED--TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS-GLVKLPVENAAIPRW 404 (912)
T ss_pred CeEEEEecCCCCc-eEEEecC--CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC-CceEeecccccccce
Confidence 4777778554443 3331221 15555899999999999841 2 2 588888866443 22344443 45566
Q ss_pred EEeCCCCCeEEEEecCCC-CCC-c---eEEEEEcCC----CCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc
Q 013884 97 EVSKAPGSHVAVFVPESK-GSP-A---SVQIYACGK----DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT 167 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~-~~~-~---~v~i~~~~~----~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~ 167 (434)
.+..+++..| +|+.+.+ ..+ + .-.-|.++= +...+.+..-.+|..-...-...-.|..||-..-...+.
T Consensus 405 rv~e~gdt~i-vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dga~hggvs~~~~lavtga~llr~~~~~~~~- 482 (912)
T TIGR02171 405 RVLENGDTVI-VYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDGAYHGGVSEDLNLAVSGARLLRAHVANEDV- 482 (912)
T ss_pred EecCCCCeEE-EEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhccccccccccCCceeeehhhHhhhhhccccc-
Confidence 6677755555 4443322 221 1 223455541 111222333334433221111222233333111000000
Q ss_pred CceeecceeEEEEeeCCCceeeeecCCCCC--eEEEEECc-CCCEEEEEEccCC---CeEEEEeccceeEEEcC--CcC-
Q 013884 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGP--VHDVQWSY-SGSEFAVVYGFMP---ASATIFNKKCRPILELG--SGP- 238 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~--i~~~~wsp-dg~~~av~~g~~~---~~i~l~d~~~~~~~~~~--~~~- 238 (434)
-.|...+|+ ++...|.+.|.+++. ..-+.|-- .|+.|+ |..= ..+.|-|.+++.+.... .+.
T Consensus 483 ---~~~~~~vwy---n~eqacn~sl~~d~~~rt~fldfgg~tg~~fv---g~~y~~he~~lvads~gklv~~v~ap~gyt 553 (912)
T TIGR02171 483 ---DNGKDDVWY---NGEQACNASLAKDGSKRTLFLDFGGSTGQAFV---GQKYGVHERLLVADSKGKLVRAVAAPAGYT 553 (912)
T ss_pred ---ccCccceee---cchhccchhhhccCCcceEEEecCCccchhhc---cccccceeEEEEecCCCchhhhccCCCCcc
Confidence 012222333 255566666654332 23344442 455565 3321 26667788777766541 110
Q ss_pred eeEEEECCCCCeEEEEecCCCC---CeEEEEEccCCEEEEEeeCCCce
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLP---GDMAFWDYVDGKQLGTTRAECSV 283 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~---g~i~iwd~~~~~~i~~~~~~~~~ 283 (434)
..--.|--..+-++++..-|.+ -+|.+.|+.+++.+...++....
T Consensus 554 fdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~elw 601 (912)
T TIGR02171 554 FDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGDELW 601 (912)
T ss_pred ccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeecccccc
Confidence 0001144443555555544333 47889999988877776664433
No 366
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.60 E-value=0.11 Score=32.84 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=23.3
Q ss_pred CcceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCC
Q 013884 1 MLLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETG 36 (434)
Q Consensus 1 ~V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g 36 (434)
.|+++.|||... +|+..+ .-+.|.|+|+.++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E-----~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAE-----HQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEc-----cCCeEEEEEcccC
Confidence 378999998655 666555 4588999999864
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=1.1 Score=41.25 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCC---cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~---~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
...+.++.|+|+.+.+..+ ...|..+--.+.+++.+..++- ..-.+|.|.-+|+++++-- -++.++++.+...
T Consensus 85 ~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE---R~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE---RDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh---hcceEEEEEEcCC
Confidence 3458999999999988775 5667777777888888887742 3335689999998888765 3458888876643
Q ss_pred E-EEE------Eee---C-C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 272 K-QLG------TTR---A-E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~-~i~------~~~---~-~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
. .+. .+. . . +.-.++|+|..+.|..+-. -+=+.|+.+++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE------r~P~~I~~~~~~ 212 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE------RNPIGIFEVTQS 212 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc------cCCcEEEEEecC
Confidence 1 111 111 1 1 2223999999999999988 788888888654
No 368
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=94.53 E-value=7.3 Score=40.92 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=133.0
Q ss_pred ceEEecCCCcEEEEEecCC-C---CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CC--eEEEE
Q 013884 3 LLLTCLRVGLIIQTFQKSS-T---PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TN--EIQFF 75 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~-~---~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~--~i~v~ 75 (434)
....++|.|..++...... . .....+.+-|..+ +...... .....+.|||||++++... ++ ..++|
T Consensus 16 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~~~~~~~l~ 88 (620)
T COG1506 16 SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFG----GGVSELRWSPDGSVLAFVSTDGGRVAQLY 88 (620)
T ss_pred cCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccC----CcccccccCCCCCEEEEEeccCCCcceEE
Confidence 4456788888888766421 1 1123444434333 2222111 4445789999999999886 32 23444
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC----CCC----CceEEEEEcCCCCC---------CCceeeee
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES----KGS----PASVQIYACGKDLQ---------SQPLARRS 138 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~----~~~----~~~v~i~~~~~~~~---------~~~i~~~~ 138 (434)
-..... .......++....|+|.+ ..+++..++. .+. +..+.+|....... ........
T Consensus 89 l~~~~g---~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~ 164 (620)
T COG1506 89 LVDVGG---LITKTAFGVSDARWSPDG-DRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLG 164 (620)
T ss_pred EEecCC---ceeeeecccccceeCCCC-CeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCccccccc
Confidence 332211 233344567778888884 3333321111 010 01122222222100 11222333
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~ 218 (434)
....++..+.|++++..++...... + ..-+.. ..+.... ...........+..+..+.|.++|+.+++.....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 165 LGNLDVVSFATDGDGRLVASIRLDD-D--ADPWVT--NLYVLIE-GNGELESLTPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred CCCCceeeeeeCCCCceeEEeeecc-c--cCCceE--eeEEEec-CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 4455666777777777665543221 1 111111 1111111 22122223334566889999999998877543333
Q ss_pred C------eEEEEeccceeEEE---cCC--cCeeEEEEC-CCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEE
Q 013884 219 A------SATIFNKKCRPILE---LGS--GPYNTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTS 285 (434)
Q Consensus 219 ~------~i~l~d~~~~~~~~---~~~--~~~~~i~~s-P~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~ 285 (434)
. .+.+++.+...+.. ... ...-.+.+. +++..+.++..+ .|...+...... ..............
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~v~ 316 (620)
T COG1506 239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG--GGSSPLFRVDDLGGGVEGLSGDDGGVP 316 (620)
T ss_pred cCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC--CCceEEEEEeccCCceeeecCCCceEE
Confidence 1 34444511111111 000 000111122 223333333321 356777665522 12222223323344
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.|+.+|+.+++.-++|.. -..+.+++.
T Consensus 317 ~f~~~~~~~~~~~s~~~~--p~~i~~~~~ 343 (620)
T COG1506 317 GFDVDGRKLALAYSSPTE--PPEIYLYDR 343 (620)
T ss_pred EEeeCCCEEEEEecCCCC--ccceEEEcC
Confidence 555599999988876543 345666654
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.52 E-value=4.5 Score=38.47 Aligned_cols=109 Identities=13% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--Ec
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DY 268 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~ 268 (434)
.+++|++++-- +| .+++..| .++.+|++.... +.. +...+.........+.+|++|.. ..-+.++ +.
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~---~~sv~~~~~~~ 158 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDA---MKSVSLLRYDE 158 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEES---SSSEEEEEEET
T ss_pred ecCcceEhhhh-CC-EEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEc---ccCEEEEEEEc
Confidence 37899998865 34 4665444 589999986444 332 22333333444444678888873 3356665 54
Q ss_pred cCCEE--EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 269 VDGKQ--LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 269 ~~~~~--i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+..+. +..-. ...++.+.+-+|++.++.+.. ++.+.++.+..
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~------~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK------DGNLFVLRYNP 203 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET------TSEEEEEEE-S
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC------CCeEEEEEECC
Confidence 33322 22221 225666888877788888877 99999999863
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.48 E-value=0.82 Score=48.45 Aligned_cols=123 Identities=11% Similarity=0.227 Sum_probs=74.0
Q ss_pred eEEEEeeCCCcee-eeecCCCCCeEEEEECcCC--------CEEEEEEccCCCeEEEEeccc--eeEE-----Ec-CCcC
Q 013884 176 KLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSG--------SEFAVVYGFMPASATIFNKKC--RPIL-----EL-GSGP 238 (434)
Q Consensus 176 ~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg--------~~~av~~g~~~~~i~l~d~~~--~~~~-----~~-~~~~ 238 (434)
.||.+++..+... .-.+....+|.+++ |+. ..|+ |..+..+..||.+- ..+. ++ ....
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4777776654311 11233344555544 321 2233 55667889999863 2222 12 2345
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
..|++=+.+|. ||+|+ ..|.|++||.-..+.-..+.+ ..++.+..+.||++|+..+ +.-+.|.+.
T Consensus 580 Fs~~aTt~~G~-iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDGY-IAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCce-EEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence 66777777764 56676 678999999543322223333 3667799999999988665 678888875
No 371
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.46 E-value=0.18 Score=52.75 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=74.2
Q ss_pred ccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCC
Q 013884 215 GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDG 291 (434)
Q Consensus 215 g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg 291 (434)
|+-...+..+|+++...... ..+.+.-++. +++++++|. -.|+|.+-|.++.+.++++.+|.-+..+|+-.|
T Consensus 153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G 227 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG 227 (1118)
T ss_pred cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccC
Confidence 44445777788876554433 2333544554 478888776 568999999999999999999988888999999
Q ss_pred CEEEEEEcCCce---eeCCcEEEEee
Q 013884 292 RYFMTATTAPRL---QIDNGIKIFHH 314 (434)
Q Consensus 292 ~~l~tas~~~rl---~~D~~i~iw~~ 314 (434)
..|++++.+-|. .+|.-|+|||+
T Consensus 228 NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CeEEEeecccccccccccchhhhhhh
Confidence 999999998875 58999999997
No 372
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.26 E-value=3 Score=40.61 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccc--------eeEEE-cC------CcCeeEEEECCCCCeEEEEecC-C
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKC--------RPILE-LG------SGPYNTVRWNPKGKFLCLAGFG-N 258 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~-d~~~--------~~~~~-~~------~~~~~~i~~sP~g~~l~~~~~~-~ 258 (434)
...+.+++.++| +.| +..+ .|..| |..+ +.+.+ +. ....+.+.|.|||.+.++-+.. +
T Consensus 72 ~~p~Gi~~~~~G--lyV--~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~ 146 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYV--ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA 146 (367)
T ss_pred CCccceeEecCC--EEE--eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence 345789999988 333 2333 45544 4422 12222 32 2336789999999866554411 1
Q ss_pred ---------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884 259 ---------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 259 ---------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
..|.|.-+|.++.+......+. +...++|+|+|+.+++-.
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 1256777777665432222233 556699999999877643
No 373
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.07 E-value=6.5 Score=38.60 Aligned_cols=92 Identities=7% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCEEEEEEccCCCeEEEEeccc-eeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884 207 GSEFAVVYGFMPASATIFNKKC-RPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~-~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+..+.+ +..++.+..+|.+. +.+-... .....+... .+..|++++ .+|.|++.|..+++.+...+-.
T Consensus 294 ~~~vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~---~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 294 GGRIYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD---SEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred CCEEEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCCC
Confidence 444553 34567888888753 3332221 111111111 245666666 5689999999999988776532
Q ss_pred CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 281 CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
.+.. ... .+..|++++. |+.+..++
T Consensus 367 ~~~s~P~~--~~~~l~v~t~------~G~l~~~~ 392 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQAR------DGTVYAIT 392 (394)
T ss_pred cceeCCEE--ECCEEEEEeC------CceEEEEe
Confidence 1211 112 2446777777 77776654
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.18 Score=53.74 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=59.5
Q ss_pred EccCCCeEEEEeccceeE--EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceE
Q 013884 214 YGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVT 284 (434)
Q Consensus 214 ~g~~~~~i~l~d~~~~~~--~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~ 284 (434)
.|...+.+-.+|.+++.- +.- ..+++.+++|+-+|++++.|- .+|.|.+||+..++.++.+..+ .+..
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 356667888888876522 222 478999999999999988654 3489999999998776655433 4455
Q ss_pred EEECCCCCEEEEEEc
Q 013884 285 SEWSPDGRYFMTATT 299 (434)
Q Consensus 285 ~~wspdg~~l~tas~ 299 (434)
+.|..++..++++..
T Consensus 181 v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEeCCCcEEEEccC
Confidence 788888776666543
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=5.7 Score=37.53 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=100.3
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY 86 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~ 86 (434)
|.|++..|..+.- ..+.|+-|+..+|+. ..|.... .+.++..-.++..|+.+. ..+.+++..........
T Consensus 32 w~~~~~~L~w~DI----~~~~i~r~~~~~g~~-~~~~~p~----~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 32 WDPDRGALLWVDI----LGGRIHRLDPETGKK-RVFPSPG----GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLL 101 (307)
T ss_pred CcCCCCEEEEEeC----CCCeEEEecCCcCce-EEEECCC----CcccceeecCCCeEEEEc-cccEEEeccCCceeEEe
Confidence 5566665543331 246778888776643 3443332 222333333343444332 23344444322210111
Q ss_pred ee-----ecCCeeEEEEeCCCCCeEEEEe---cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 87 RL-----RVPGVAAFEVSKAPGSHVAVFV---PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 87 ~~-----~~~~v~~~~~sp~~~~~ia~~~---~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.. .....++....|++.-.+..-. .+.......-.||.+.-. +..+......-.-...++|||||+.+.+
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCCCEEEE
Confidence 00 1113445666776422111111 012222223367777621 4444444332333457999999997655
Q ss_pred EEEecccccCceeecceeEEEEeeC---CCc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccee
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRP 230 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~ 230 (434)
. .+.. . .||.+... +.. ...+... ..+..-.++...+|...+. .... +.|..|+.++..
T Consensus 180 a-DT~~---~-------~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pdG~l 246 (307)
T COG3386 180 A-DTPA---N-------RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPDGKL 246 (307)
T ss_pred E-eCCC---C-------eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCCCcE
Confidence 3 2211 1 23333322 110 1111111 1233334566666766642 2323 388999888766
Q ss_pred EEEc--CCcCee-EEEECCCCCeEEEEe
Q 013884 231 ILEL--GSGPYN-TVRWNPKGKFLCLAG 255 (434)
Q Consensus 231 ~~~~--~~~~~~-~i~~sP~g~~l~~~~ 255 (434)
+... +..... ++.-.|+.+.|.+.+
T Consensus 247 ~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 247 LGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 6544 423334 444466666555543
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=7.1 Score=38.21 Aligned_cols=204 Identities=11% Similarity=0.079 Sum_probs=122.3
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+..++++..+... .++.|.+.|....... .... ...-..++++|++.. + |+.......+.+.+.+-.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--~~~~vG~~P~~~~~~~~~~~-v--YV~n~~~~~~~vsvid~~t--- 149 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--GSIPVGLGPVGLAVDPDGKY-V--YVANAGNGNNTVSVIDAAT--- 149 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCccccee--eEeeeccCCceEEECCCCCE-E--EEEecccCCceEEEEeCCC---
Confidence 56778888744433 3579999996553321 1221 124567888888433 2 2222211346777777665
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee----eecCCCCCeEEEEECcC
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~~~wspd 206 (434)
...+.. .+-...-..+..+|+|+.+++.. .++..+..++..+..... ........-..+.++|+
T Consensus 150 ~~~~~~-~~vG~~P~~~a~~p~g~~vyv~~-----------~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 150 NKVTAT-IPVGNTPTGVAVDPDGNKVYVTN-----------SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred CeEEEE-EecCCCcceEEECCCCCeEEEEe-----------cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 555555 33222337889999999887753 122345555544432211 01122334468999999
Q ss_pred CCEEEEEEccC-CCeEEEEeccceeEEEc--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 207 GSEFAVVYGFM-PASATIFNKKCRPILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 207 g~~~av~~g~~-~~~i~l~d~~~~~~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|..+.+.-... ++.+...|.....+... . ...-..+..+|+|+++.++... .+.+.+.|..+.........
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCCCCceeeeecc
Confidence 99777643332 25888888876655543 1 1134568999999999888543 36899999988776665543
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.78 E-value=1.3 Score=47.11 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCCCceee-eee----cC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFPKGILY-RLR----VP 91 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~~~~~~-~~~----~~ 91 (434)
...|+-.|++.|+.|..+..+. ..+...+.|+ ++.++..+++.|..||..-.....+. ..+ ..
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCC----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 4678888999999999998764 2224566664 34555567889999997643211111 111 11
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...+++ ..++.+||+ +...|.||||+--. ...-..+...+..++.+.-+.||++|+..+.
T Consensus 579 ~Fs~~a--Tt~~G~iav-----gs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 579 NFSCFA--TTEDGYIAV-----GSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CceEEE--ecCCceEEE-----EeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 233333 233455654 35668999998432 3333344455778999999999999987654
No 378
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=93.34 E-value=7.2 Score=36.70 Aligned_cols=97 Identities=16% Similarity=0.337 Sum_probs=67.6
Q ss_pred ccCCCeEEEE---eccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-EEEEeeCC--CceEEE
Q 013884 215 GFMPASATIF---NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSE 286 (434)
Q Consensus 215 g~~~~~i~l~---d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~~~~~ 286 (434)
|...++++.. ......+..+ |.+.+.++.|.|..+.|.++..+. .+.+||+--++ ......+| .+..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCcceeeeeccchhhhhhhh
Confidence 5555555544 3345566665 788999999999999999888554 99999986443 22333333 344456
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
.-+--+.+.++.. |+.|.+|+++-+...
T Consensus 248 ~~~~t~~l~S~~e------dg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 248 YAQHTRQLISCGE------DGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhhheeeeeccC------CCeEEEEeccceeec
Confidence 6666678888888 999999999765443
No 379
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.22 E-value=1.2 Score=45.96 Aligned_cols=95 Identities=18% Similarity=0.381 Sum_probs=63.3
Q ss_pred CEEEEEEccCCCeEEEEeccceeE---EEc-CCcCeeEEEE--CCCCCeEEEEecCCCCCeEEEEEcc---------CCE
Q 013884 208 SEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRW--NPKGKFLCLAGFGNLPGDMAFWDYV---------DGK 272 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~~~---~~~-~~~~~~~i~~--sP~g~~l~~~~~~~~~g~i~iwd~~---------~~~ 272 (434)
+.+|++ ......++|||.+...+ ..| ..+.|..+.| .|+|+.++..||++ .|.++--. +..
T Consensus 41 ~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~---~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 41 KKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH---HVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred CcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc---EEEEEEccchhhhcCCcccc
Confidence 456665 33345999999975432 123 4678888887 57899999999887 88887432 112
Q ss_pred EE-----EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 273 QL-----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i-----~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.+ ..+..|.+.+..|-+||..++.+ +|.+.|++-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence 22 23344567779999999876644 567777764
No 380
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.18 E-value=2.6 Score=43.95 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=63.0
Q ss_pred CCCeEEEEECcCCCEEEEEE---ccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~---g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
.|--+.+.|-|+|..++.+- +....++.+|.-.+-.--++ .......++|+-....++++. +| .|.+|
T Consensus 246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n---~~~lw 321 (1243)
T COG5290 246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GN---LLKLW 321 (1243)
T ss_pred ccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cc---eEEEE
Confidence 34556799999999999764 11222677776543221122 123345577877777666553 33 79999
Q ss_pred EccCCEE--EEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 267 DYVDGKQ--LGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 267 d~~~~~~--i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
-..+..- -.....+.+..+.|.|....-+.-+.
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 9888743 33445567778999998665444443
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.08 E-value=3.4 Score=32.30 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=52.2
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~ 227 (434)
.+..+|..-|++.+ .|..++.|.++.-++ .+.....|..++-... .+|+ |+..+|+|-+|+-.
T Consensus 9 d~d~dg~~eLlvGs--~D~~IRvf~~~e~~~------------Ei~e~~~v~~L~~~~~-~~F~--Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 9 DFDGDGENELLVGS--DDFEIRVFKGDEIVA------------EITETDKVTSLCSLGG-GRFA--YALANGTVGVYDRS 71 (111)
T ss_pred ecCCCCcceEEEec--CCcEEEEEeCCcEEE------------EEecccceEEEEEcCC-CEEE--EEecCCEEEEEeCc
Confidence 34556655444443 344555554443333 2333456677766655 5677 68889999999875
Q ss_pred ceeEEEcCCcCeeEEEE---CCCCC-eEEEEecCCCCCeEEE
Q 013884 228 CRPILELGSGPYNTVRW---NPKGK-FLCLAGFGNLPGDMAF 265 (434)
Q Consensus 228 ~~~~~~~~~~~~~~i~~---sP~g~-~l~~~~~~~~~g~i~i 265 (434)
...-+.-.+..++++.+ .-||. -|++|- .+|.|.+
T Consensus 72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gw---snGkve~ 110 (111)
T PF14783_consen 72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGW---SNGKVEV 110 (111)
T ss_pred ceeeeeccCCCeEEEEEEcCCCCCceEEEEEe---cCCeEEe
Confidence 44333223344555443 23443 344443 3366654
No 382
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=3 Score=40.69 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=64.9
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+|+|.++.||+|.+.+|| ...+..|.+++..+.... ......+...+|+.. +-+|+... .-|.+|
T Consensus 65 d~G~I~SIkFSlDnkilAV--QR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~----~G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAV--QRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD----QGIEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEE--EecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec----CCeEEE
Confidence 4789999999999999997 455779999987432211 113445778899877 55555442 237777
Q ss_pred EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884 267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
-+... +.+...+.+ ++.-..|.|+-+.++.+++
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 65543 233333333 5555889999887776664
No 383
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.89 E-value=8.1 Score=41.68 Aligned_cols=112 Identities=18% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEec----------------cceeEEEc-----CCcCeeEEEE
Q 013884 193 RKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFNK----------------KCRPILEL-----GSGPYNTVRW 244 (434)
Q Consensus 193 ~~~~~i~~~~ws---p----dg~~~av~~g~~~~~i~l~d~----------------~~~~~~~~-----~~~~~~~i~~ 244 (434)
.-..||..|+|+ . ..+.|+|.+. ..++|+.. ..+++..+ +..+.-.++|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~---~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE---TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC---CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 447899999998 2 3347776543 36777761 12333333 4567788999
Q ss_pred CCCC-CeEEEEecCCCCCeEEEEEccCC-----EEE-------EEe-eC---CCce-EEEECCCCCEEEEEEcCCceeeC
Q 013884 245 NPKG-KFLCLAGFGNLPGDMAFWDYVDG-----KQL-------GTT-RA---ECSV-TSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 245 sP~g-~~l~~~~~~~~~g~i~iwd~~~~-----~~i-------~~~-~~---~~~~-~~~wspdg~~l~tas~~~rl~~D 306 (434)
+|.. +.||+.. ..|+..|||+..+ ..+ ..+ .. .... .+.|.++-..|+++. .
T Consensus 154 nP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-------r 223 (765)
T PF10214_consen 154 NPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-------R 223 (765)
T ss_pred ccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-------C
Confidence 9954 4777777 6689999999211 011 111 11 1112 388999988888887 4
Q ss_pred CcEEEEeecCc
Q 013884 307 NGIKIFHHNGS 317 (434)
Q Consensus 307 ~~i~iw~~~g~ 317 (434)
..+.++|+.+.
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 67777877654
No 384
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=5.1 Score=41.62 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=38.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
..|+|++ .+|+.+....-++. ..+ .+-||.|+.+++...+++++||+...
T Consensus 64 ~~I~If~-~sG~lL~~~~w~~~--~lI-~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFN-ISGQLLGRILWKHG--ELI-GMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEe-ccccchHHHHhcCC--Cee-eecccCCceEEEEeccceEEEeecch
Confidence 3588888 46777766544432 555 88999999999999999999999754
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.68 E-value=11 Score=37.05 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=95.8
Q ss_pred CCcEEEEe--cCCeEEEEeCCC-CCCceeeee-ecC------Ce---eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 60 DEAVACRM--ATNEIQFFDTTD-FPKGILYRL-RVP------GV---AAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 60 d~~~la~~--~~~~i~v~~~~~-~~~~~~~~~-~~~------~v---~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
+-++|+.. ..+.|+|+|+.. .......+. ..+ ++ ..+---|++.-+|.+.-...++.++-+-+++-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 44566654 457999999873 333222222 110 11 122223443445555444445666666676665
Q ss_pred CCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEecc-------------cccCceeecceeEEEEeeCCC-ceee
Q 013884 127 KDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDV-------------DKTNQSYYGESKLNYLTTDGT-HEGL 189 (434)
Q Consensus 127 ~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~-------------d~~~~~~~g~~~l~~l~~~~~-~~~~ 189 (434)
++ ..+...... ..--..+-|+|.-+.++. ++. |.... -||. .|+.++.... ..+.
T Consensus 166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiS---SeWg~P~~~~~Gf~~~d~~~~-~yG~-~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMIS---SEWGAPSMFEKGFNPEDLEAG-KYGH-SLHVWDWSTRKLLQT 237 (461)
T ss_dssp T-----EEEE--SB-TT------EEEETTTTEEEE----B---HHHHTT---TTTHHHH--S---EEEEEETTTTEEEEE
T ss_pred cc---cccceeccCCCCCCCCCCeEEcCCCCEEEE---eccCChhhcccCCChhHhhcc-cccC-eEEEEECCCCcEeeE
Confidence 42 222222111 112246778887665432 221 11111 2443 4677765443 2344
Q ss_pred eecCCCCC-eEEEEEC--cCCCEEEEEEccCCCeEEEEec-c-----ceeEEEcC-------------------CcCeeE
Q 013884 190 VPLRKEGP-VHDVQWS--YSGSEFAVVYGFMPASATIFNK-K-----CRPILELG-------------------SGPYNT 241 (434)
Q Consensus 190 v~l~~~~~-i~~~~ws--pdg~~~av~~g~~~~~i~l~d~-~-----~~~~~~~~-------------------~~~~~~ 241 (434)
+.|..++. ...+.|. |+..+=.+ ...-.++|.+|-. + .+.+.++. ..-++.
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFv-g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFV-GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEE-EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EecCCCCCceEEEEecCCCCccceEE-EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 45554443 3456655 44443332 2333446665532 1 23333332 134688
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC------------------CceEEEECCCCCEEEEEEc
Q 013884 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE------------------CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~------------------~~~~~~wspdg~~l~tas~ 299 (434)
|..|.|.++|.++.... |.|+.||+.+- +++....-. ..--++.|-||+.|...++
T Consensus 317 I~iSlDDrfLYvs~W~~--GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLH--GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEETTT--TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcccC--CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999999998855 99999999863 555543211 1123889999999988765
No 386
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.41 E-value=8.3 Score=35.00 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~ 89 (434)
|.+++... ..+.|.+-++++|+....|..... -.+ ..+-.+|+.++..++ |++.+..|..... .+.+.+
T Consensus 63 gdfVV~GC-----y~g~lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~--cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGC-----YSGGLYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYG--CVYKSK 132 (354)
T ss_pred CCEEEEEE-----ccCcEEEEEecchhheeeeeehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccc--eEEecc
Confidence 55666555 567788889999988777766532 333 456677888888874 6688888876543 334444
Q ss_pred cC
Q 013884 90 VP 91 (434)
Q Consensus 90 ~~ 91 (434)
..
T Consensus 133 cg 134 (354)
T KOG4649|consen 133 CG 134 (354)
T ss_pred cC
Confidence 33
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=1.9 Score=42.72 Aligned_cols=127 Identities=11% Similarity=0.198 Sum_probs=73.0
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE-----EEccCCCeEEEEeccceeE--------EEc-CCcCeeE
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV-----VYGFMPASATIFNKKCRPI--------LEL-GSGPYNT 241 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av-----~~g~~~~~i~l~d~~~~~~--------~~~-~~~~~~~ 241 (434)
.||.+++..+.. .-.-.-+..|.-+.+.|+.+.--+ +-|-.+..|.-||.+.+-. +++ .....+|
T Consensus 357 ~l~klDIE~GKI-VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 357 KLYKLDIERGKI-VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeccccee-eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 477777765531 111111233666667776542110 0155667888888763221 122 2334455
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
++=.-+| +|++|+ +.|.|++||.-...--..+.+ ..+..+.-+.||++|+..+ +..+.+-+.
T Consensus 436 ~aTT~sG-~IvvgS---~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESG-YIVVGS---LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT 499 (644)
T ss_pred eeecCCc-eEEEee---cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence 5555554 667787 778999999832222222333 3677799999999988655 677777665
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.85 E-value=6.2 Score=36.13 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~ 88 (434)
|-=|.+||. ++...+||..+.+.+.+|.... ++| .++ .|++.|..+ +.+.|+++|..++........
T Consensus 100 d~l~qLTWk------~~~~f~yd~~tl~~~~~~~y~~---EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 100 DKLYQLTWK------EGTGFVYDPNTLKKIGTFPYPG---EGW-GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp TEEEEEESS------SSEEEEEETTTTEEEEEEE-SS---S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CEEEEEEec------CCeEEEEccccceEEEEEecCC---cce-EEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 334556764 6889999999999999887653 889 776 566666555 567999999988765333333
Q ss_pred e-----cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCcee---eeeecccceeEEEECCCC
Q 013884 89 R-----VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLA---RRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 89 ~-----~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~---~~~~~~~~~~~~~ws~~G 153 (434)
. +..++.+++-.+. ...|+...|+++ ..+.++++.... .... .+.....--..++|.|.+
T Consensus 168 ~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG---~V~~~iDls~L~--~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETG---KVVGWIDLSGLR--PEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT----BEEEEEE-HHHH--HHHTSTTST--TTS-EEEEEEETTT
T ss_pred EECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCC---eEEEEEEhhHhh--hcccccccccccCCeeEeEeEeCCC
Confidence 3 3357777776431 123334444443 233444443210 0000 000001122468999988
Q ss_pred CeEEEE
Q 013884 154 TGLLAV 159 (434)
Q Consensus 154 ~~l~~~ 159 (434)
..+++.
T Consensus 243 ~~l~vT 248 (264)
T PF05096_consen 243 DRLFVT 248 (264)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 887663
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.83 E-value=10 Score=34.81 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=48.8
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
..|.|-.+|.++-+.+.+ ....|+.+|+.+|+.+........ -.+ .+..-.|.-+.++--++...+||..++.
T Consensus 48 QGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgE---Git~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGE---GITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EE---EEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred ccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccce---eEEEECCEEEEEEecCCeEEEEccccce
Confidence 357787888888877754 346899999999998766544321 012 2333345445555577899999998865
Q ss_pred C
Q 013884 82 K 82 (434)
Q Consensus 82 ~ 82 (434)
.
T Consensus 122 ~ 122 (264)
T PF05096_consen 122 K 122 (264)
T ss_dssp E
T ss_pred E
Confidence 4
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=1 Score=48.54 Aligned_cols=137 Identities=11% Similarity=0.080 Sum_probs=87.1
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee------EEEc--------CCcCeeEEEECCCCCeEEEEecC
Q 013884 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP------ILEL--------GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~------~~~~--------~~~~~~~i~~sP~g~~l~~~~~~ 257 (434)
+.++-+|+.+...+|+...+++....+..|..||++.-. ..-| ......++.|+|.=-...+...
T Consensus 97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l- 175 (1405)
T KOG3630|consen 97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL- 175 (1405)
T ss_pred eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-
Confidence 344678889999999988888777766689999986211 1101 1233457889986543222221
Q ss_pred CCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec------cccee
Q 013884 258 NLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF------DKLFQ 329 (434)
Q Consensus 258 ~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~------~~~~~ 329 (434)
.++.|.+.-+.-. ..+..+.- ...++++|||-|+.++.+-. .+++.-|...++.....+. .++.+
T Consensus 176 -~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 176 -SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred -cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCcceeE
Confidence 2356777655422 22222222 25567999999999999988 8889889988875444332 34677
Q ss_pred eEEEcCC
Q 013884 330 AEWKPVS 336 (434)
Q Consensus 330 ~~w~p~~ 336 (434)
|.|--.-
T Consensus 249 v~Wl~t~ 255 (1405)
T KOG3630|consen 249 VTWLSTQ 255 (1405)
T ss_pred EEEecce
Confidence 8886443
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=2.7 Score=41.73 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--------EEEEecCCeEEEEeCCCCCC--ceeeeee-c---C
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--------VACRMATNEIQFFDTTDFPK--GILYRLR-V---P 91 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--------~la~~~~~~i~v~~~~~~~~--~~~~~~~-~---~ 91 (434)
..|+=.|++.|+.+..+..+. .++.+++.||.+ .|+..+++.|.-||..-... ......+ . .
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN 431 (644)
T ss_pred CcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccc
Confidence 457777999999999887763 366788888754 44555778999999753222 1111111 0 1
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
+..++ ...++.+|++ ++..|.|+||+--. .+.-..+......+..+.-+.+|++|+..+
T Consensus 432 nFsc~--aTT~sG~Ivv-----gS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 432 NFSCF--ATTESGYIVV-----GSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccee--eecCCceEEE-----eecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 12222 2222344543 35668899999633 334444555667777888889999987654
No 392
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.04 E-value=1.6 Score=27.08 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.3
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013884 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW 287 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w 287 (434)
|+|++|.++..+. +.|.++|..+++.+..+.-. ....+.+
T Consensus 1 pd~~~lyv~~~~~--~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGS--NTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCC--CEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 7889888877543 79999999998877766543 3333444
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.90 E-value=0.97 Score=40.46 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=42.5
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEE------eecC-----cCCCCCCeeeecCCCcEEEEecCCeEE
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQL------FQKN-----MTKTTWPSIRFSSDEAVACRMATNEIQ 73 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~------~~~~-----~~~~~~~~~~~S~d~~~la~~~~~~i~ 73 (434)
+.+..+|.||+... .++.+++||+.+++.+..- .... .....+..+..+.+|.-++...++...
T Consensus 16 ~~l~~~~~~Ll~iT-----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 16 SFLECNGSYLLAIT-----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred EEEEeCCCEEEEEe-----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 44677899999888 8899999999998775432 0000 011333345555666666555555555
Q ss_pred EEeC
Q 013884 74 FFDT 77 (434)
Q Consensus 74 v~~~ 77 (434)
.|+.
T Consensus 91 ~y~~ 94 (219)
T PF07569_consen 91 SYSP 94 (219)
T ss_pred Eecc
Confidence 5554
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=0.63 Score=49.76 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=50.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~ 77 (434)
|++++|+-||++|+.+- .+|.|.+||+..++.++.+.........+..+.|..++..+.++.. |. +|+.
T Consensus 133 Vtsvafn~dg~~l~~G~-----~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 133 VTSVAFNQDGSLLLAGL-----GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeEecCCCceecccc-----CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 78999999999998766 6899999999999888776654432244446677777776665533 33 6654
No 395
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.72 E-value=0.64 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=19.3
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
......|||||++|+.++.... .+...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~---~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRND---RGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT-----SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCC---CCCcCEE
Confidence 3445899999999999987411 1566666
No 396
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.37 E-value=0.12 Score=51.92 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=79.7
Q ss_pred ceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCC--cE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013884 3 LLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETG--EA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g--~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~ 76 (434)
++++|++- .+.||..- ..-..|..+.|||+.++ .+ -..|... ...+..+++|-.|.+++.+|.. ..++++|
T Consensus 106 t~lAwneLDtn~LAagl-dkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGL-DKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred cccccccccHHHHHhhh-hhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhh
Confidence 45666663 44555432 11134678999999887 22 1223321 1133446788899998888855 5999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCC
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRG 152 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~ 152 (434)
+..-. .....+...-+..+.++|-...++|.+. ++.+-+||..... ..++.+.. ........++|.|.
T Consensus 183 lRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 183 LRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred hhhhh-hhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccC
Confidence 76311 1122223334566677774345555332 4578899942210 22222111 11123678899997
Q ss_pred CCeEEEEE
Q 013884 153 STGLLAVA 160 (434)
Q Consensus 153 G~~l~~~~ 160 (434)
-+.++.+.
T Consensus 255 rtglla~l 262 (783)
T KOG1008|consen 255 RTGLLAVL 262 (783)
T ss_pred Ccchhhhh
Confidence 66655443
No 397
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=90.32 E-value=2.2 Score=45.55 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeccc--eeEEEc--CCcCeeEEEECCC
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKC--RPILEL--GSGPYNTVRWNPK 247 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~--~--~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~ 247 (434)
.|.+++.+|.....+.+....+|.+.+|||||++++++++... + .|.+-|+.. ..+..+ ....|-.-...++
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~ 409 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN 409 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence 5788888887666666777899999999999999998666655 3 577777752 222233 4555555566777
Q ss_pred CCeEE
Q 013884 248 GKFLC 252 (434)
Q Consensus 248 g~~l~ 252 (434)
|..++
T Consensus 410 gdt~i 414 (912)
T TIGR02171 410 GDTVI 414 (912)
T ss_pred CCeEE
Confidence 76443
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.24 E-value=7.5 Score=30.44 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=49.3
Q ss_pred EEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceE-E
Q 013884 209 EFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVT-S 285 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~-~ 285 (434)
+|+ .|+.|..|++|+-. ..+.++ ....+..+.-...+++. .+- .+|+|-+|+.... +...+ .+.++. .
T Consensus 17 eLl--vGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F~-Y~l---~NGTVGvY~~~~R--lWRiKSK~~~~~~~ 87 (111)
T PF14783_consen 17 ELL--VGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRFA-YAL---ANGTVGVYDRSQR--LWRIKSKNQVTSMA 87 (111)
T ss_pred eEE--EecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEEE-EEe---cCCEEEEEeCcce--eeeeccCCCeEEEE
Confidence 454 38889999999865 445555 56778888887776644 343 4589999986433 22222 223444 2
Q ss_pred EECC--CCC-EEEEEEc
Q 013884 286 EWSP--DGR-YFMTATT 299 (434)
Q Consensus 286 ~wsp--dg~-~l~tas~ 299 (434)
.+.. ||. .|++|-.
T Consensus 88 ~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWS 104 (111)
T ss_pred EEcCCCCCceEEEEEec
Confidence 3333 332 5666665
No 399
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.57 E-value=1 Score=27.64 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=20.0
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+......|||||+.|+..+..+..|.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678999999998887754323566665
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.25 E-value=1.4 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.4
Q ss_pred cCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccC
Q 013884 237 GPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 237 ~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+.+.++.|||.. .+|+.+. ..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence 457889999854 4888776 568999999984
No 401
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.08 E-value=2.8 Score=37.56 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=46.6
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------------eCCCceEEEECCCCCEEEEEEcCCceee
Q 013884 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------------~~~~~~~~~wspdg~~l~tas~~~rl~~ 305 (434)
+.+..+|++|++.. .+|.+++||+.+++.+... ....+..+..+.+|.-|++-+
T Consensus 16 ~~l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls------- 85 (219)
T PF07569_consen 16 SFLECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS------- 85 (219)
T ss_pred EEEEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------
Confidence 34556788888777 6689999999998765432 223455688888888877765
Q ss_pred CCcEEEEeecCce
Q 013884 306 DNGIKIFHHNGSL 318 (434)
Q Consensus 306 D~~i~iw~~~g~~ 318 (434)
++....|+.+=..
T Consensus 86 ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 86 NGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEeccccce
Confidence 5667777765443
No 402
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.05 E-value=12 Score=33.99 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred CcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013884 204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
-+|.+.++++ |+..+++.-.|.+ ++...+. -...+.+-+.- -|.++++|- ..|.+++.+.++++++..+..-.
T Consensus 19 ~~dskT~v~i-gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 19 CNDSKTLVVI-GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ecCCceEEEE-ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEE---ccCcEEEEEecchhheeeeeehh
Confidence 3555666654 5555566555654 2222222 12222221111 478888887 55799999999998888776653
Q ss_pred ceE--EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 282 SVT--SEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 282 ~~~--~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.+. ..-.+||..|..++. |+.++.-|+
T Consensus 94 ~vk~~a~~d~~~glIycgsh------d~~~yalD~ 122 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSH------DGNFYALDP 122 (354)
T ss_pred hhccceEEcCCCceEEEecC------CCcEEEecc
Confidence 332 566889999999999 888887776
No 403
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.82 E-value=2.7 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=25.6
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
|+|++|....+ .+++|.++|+.+++.+..+..
T Consensus 1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEEC
Confidence 78898887663 468899999999988887755
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.77 E-value=9.8 Score=40.44 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=24.6
Q ss_pred CcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCC
Q 013884 236 SGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 236 ~~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
...+..+.|+|.+ .+|++-..| +.+++||+.+.
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsd---n~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSD---NTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecC---CEEEEEecCCC
Confidence 4567789999974 677777744 49999998753
No 405
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.23 E-value=0.074 Score=51.83 Aligned_cols=135 Identities=12% Similarity=0.246 Sum_probs=87.0
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
....|-+.|..+++.+ .+ +..++|.. ..+....+...+...+++|.-+|..++++. ...+.+.+|
T Consensus 38 i~~~w~~e~~nlavac---a~-tiv~~YD~----------agq~~le~n~tg~aldm~wDkegdvlavlA-ek~~piylw 102 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVAC---AN-TIVIYYDK----------AGQVILELNPTGKALDMAWDKEGDVLAVLA-EKTGPIYLW 102 (615)
T ss_pred ceeeEecCCCceehhh---hh-hHHHhhhh----------hcceecccCCchhHhhhhhccccchhhhhh-hcCCCeeec
Confidence 4677888887766542 11 12222211 112222333356777899999999999874 445699999
Q ss_pred eccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC-CceEEEECCCCCEEEEE
Q 013884 225 NKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 225 d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~-~~~~~~wspdg~~l~ta 297 (434)
|+..+...++. ...-.-+.|++-+..++.+. ..|++.|++..+.+.+.... +. ..+.++|.+.+..+...
T Consensus 103 d~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 103 DVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 99755444442 22333378999999999886 77899999987665544443 22 67779999987665543
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=11 Score=41.16 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CCcCeeEEEECCCCCeEEEEe
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~ 255 (434)
.....+++|+|.|+++++ |...+++.=|.-..+....+ ....+.+|+|--.-.++++-+
T Consensus 198 t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFI--GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccceeeEEeccccceeeE--ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 456789999999999996 88888887776554444433 246788999987777777644
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.41 E-value=2.3 Score=37.71 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=47.8
Q ss_pred ccCCCeEEEEeccce-eEE---EcCCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC
Q 013884 215 GFMPASATIFNKKCR-PIL---ELGSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP 289 (434)
Q Consensus 215 g~~~~~i~l~d~~~~-~~~---~~~~~~~~~-i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp 289 (434)
|..++.|++|+.... ... .+....+.+ |.---++.+.+++. .+|.|+.|+++-.+.+....+|.- -
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~h~~------~ 146 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQHNF------E 146 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec---cCCceeeeccccCceeeeeccccC------C
Confidence 777888888876411 111 112222222 22223344666666 557999999998887776655542 3
Q ss_pred CCCEEEEEEcCCceeeCCcEEEEee
Q 013884 290 DGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 290 dg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
++.++++.++ |..+++|+.
T Consensus 147 ~~e~~ivv~s------d~~i~~a~~ 165 (238)
T KOG2444|consen 147 SGEELIVVGS------DEFLKIADT 165 (238)
T ss_pred CcceeEEecC------CceEEeecc
Confidence 4445555555 566666654
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.38 E-value=2.6 Score=44.70 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=45.9
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----------CCE--EEEE-e-------e-CC--CceEEEECCCC--
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLGT-T-------R-AE--CSVTSEWSPDG-- 291 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~----------~~~--~i~~-~-------~-~~--~~~~~~wspdg-- 291 (434)
..|..|..||+|++|++.|.. | |.|..+- .++ .... + . .+ .+..+.|+|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~---~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPR---G-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCC---c-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 356789999999999999843 2 4443331 111 1111 0 0 11 33459999984
Q ss_pred -CEEEEEEcCCceeeCCcEEEEeec
Q 013884 292 -RYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 292 -~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.+|++-++ ||.+|+||+.
T Consensus 161 ~~~l~vLts------dn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTS------DNTLRLYDIS 179 (717)
T ss_pred CCeEEEEec------CCEEEEEecC
Confidence 89999888 9999999995
No 409
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.34 E-value=10 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEc
Q 013884 259 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~ 299 (434)
..|.+.-||..+++......+ .....++.|||+.+|+.+-+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 358899999999875444443 36667999999999999987
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.83 E-value=25 Score=32.28 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 60 DEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 60 d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
.++.|+.|.++-|.+|+..+... .........|..+...|.-+..+++ . ++.+.+++++..
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~-~~~i~~~~~I~ql~vl~~~~~llvL-s------d~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSK-PTRILKLSSITQLSVLPELNLLLVL-S------DGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCcc-ceeEeecceEEEEEEecccCEEEEE-c------CCccEEEEchhh
Confidence 45666667655599999833222 2223333348888888864433332 1 267888888764
No 411
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.75 E-value=4.5 Score=34.69 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=23.0
Q ss_pred CceEEEECCCC------CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 281 CSVTSEWSPDG------RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 281 ~~~~~~wspdg------~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+..++|||-| ..|++.++ ++.+.||.-.+.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs------~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTS------NGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcC------CCeEEEEecCCC
Confidence 44569999954 36777777 999999987654
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.00 E-value=15 Score=35.21 Aligned_cols=99 Identities=11% Similarity=0.194 Sum_probs=52.9
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecccee---EEEc------CCcCeeEEEECCC----CCeEEEEecC---C--C
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGFG---N--L 259 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~------~~~~~~~i~~sP~----g~~l~~~~~~---~--~ 259 (434)
-.+++|.|||+.|+ ....++|++++..+.. +..+ .......++++|+ +.+.+..... . .
T Consensus 4 P~~~a~~pdG~l~v---~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV---AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEE---EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEE---EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 36899999997766 3458899999854432 3232 3455678999995 4433332211 0 1
Q ss_pred CCeEEEEEccCC-------E-EEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013884 260 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 260 ~g~i~iwd~~~~-------~-~i~~~~-----~~~~~~~~wspdg~~l~tas~ 299 (434)
...|.-|..... + .+.... .|....+.|.|||..+++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 113444443322 2 222222 345566999999976666554
No 413
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=85.66 E-value=51 Score=34.68 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=33.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
+..+.|||+|++++..+... .....+.+.++. | .+..+ . ..+....|++++..++.
T Consensus 62 ~~~~~~spdg~~~~~~~~~~-~~~~~l~l~~~~-g-~~~~~-~-----~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVG-G-LITKT-A-----FGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccccCCCCCEEEEEeccC-CCcceEEEEecC-C-ceeee-e-----cccccceeCCCCCeEEE
Confidence 45678999999999877221 112344555544 4 11111 1 33336789999998887
No 414
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=52 Score=34.62 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec--C-CC
Q 013884 119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--R-KE 195 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~-~~ 195 (434)
.|+||++. ++.+......+.+.+.|.|+.+...|++. .+.+ ++..+..|........ + ..
T Consensus 65 ~I~If~~s----G~lL~~~~w~~~~lI~mgWs~~eeLI~v~----k~g~---------v~Vy~~~ge~ie~~svg~e~~~ 127 (829)
T KOG2280|consen 65 YIRIFNIS----GQLLGRILWKHGELIGMGWSDDEELICVQ----KDGT---------VHVYGLLGEFIESNSVGFESQM 127 (829)
T ss_pred eEEEEecc----ccchHHHHhcCCCeeeecccCCceEEEEe----ccce---------EEEeecchhhhccccccccccc
Confidence 57788874 57777777777799999999988766553 1111 2333333332222111 1 13
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccceeEEEcCCcCeeE---EEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELGSGPYNT---VRW--NPKGK-FLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~-d~~~~~~~~~~~~~~~~---i~~--sP~g~-~l~~~~~~~~~g~i~iwd~ 268 (434)
..|....+..+| +++.+.+ +++.+- +.....+..+..-|-+. .+| .++++ ..++.+-+-..| ..++-.
T Consensus 128 ~~I~ec~~f~~G--Vavlt~~--g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~ 202 (829)
T KOG2280|consen 128 SDIVECRFFHNG--VAVLTVS--GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV 202 (829)
T ss_pred CceeEEEEecCc--eEEEecC--CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence 356666666666 4443443 344443 33332333332222221 222 22222 111111110000 011111
Q ss_pred cCC-EEEEEee-C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 269 VDG-KQLGTTR-A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 269 ~~~-~~i~~~~-~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+.. .....+. . ..+..+..||.+++|+.-+. +|.|++-..+-
T Consensus 203 ~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D~ 247 (829)
T KOG2280|consen 203 EESRVQLHALSWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSIDL 247 (829)
T ss_pred ecccccccccCCCCceEEEEEEcCCcceEEEEec------CCcEEEEecch
Confidence 111 1112221 1 23344999999999999988 78777766643
No 415
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.94 E-value=0.13 Score=50.29 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=91.8
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT 276 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~ 276 (434)
....|-|.+..+++ +.-+..+..||-.++..... .++....++|.-+|..+++... ..+-+++||+++... --.
T Consensus 38 i~~~w~~e~~nlav--aca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAV--ACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCceeh--hhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHHHh
Confidence 35778898888886 33355788889877766655 4566667899999987666543 347899999976421 111
Q ss_pred eeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc--ee-eeeecccceeeEEEcCCCCCCCC
Q 013884 277 TRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 277 ~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~--~~-~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+... .-+.|++.+..++.+.. .+.+.|++..-. .+ .-.+..+..|++|.+.+.-++-+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred ccCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 112122 22899999999999976 899999987332 12 22366688999999987666554
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.69 E-value=24 Score=34.25 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=74.2
Q ss_pred CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEec-c--ce--eEEEc--CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 197 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g---------~~~~-~i~l~d~-~--~~--~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
....++|.++|+.++.-.. ...+ +|.+++- + +. ....| .....+.+++.++| +++ +..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~--- 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATP--- 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCC---
Confidence 3457899999987764210 1123 6766643 2 22 22333 23344779999999 444 331
Q ss_pred CCeEEEE-EccC-------CEEE-EEee------CCCceEEEECCCCCEEEEEEcC-------C------ceeeCCcEEE
Q 013884 260 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI 311 (434)
Q Consensus 260 ~g~i~iw-d~~~-------~~~i-~~~~------~~~~~~~~wspdg~~l~tas~~-------~------rl~~D~~i~i 311 (434)
..|..+ |.+. .+.+ ..+. +|....+.|.|||...++-+.. | .....+.|.-
T Consensus 90 -~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 -PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred -CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 356655 5431 1222 2222 2334569999999877655521 0 1111244555
Q ss_pred EeecCceeeee--ecccceeeEEEcCCCCCCCC
Q 013884 312 FHHNGSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
++..|..+... -...-+.+.|+|.+...+.+
T Consensus 169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred EecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 55566544332 23345788999987655544
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.37 E-value=37 Score=32.00 Aligned_cols=129 Identities=18% Similarity=0.279 Sum_probs=64.7
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE-cc
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD-YV 269 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd-~~ 269 (434)
..+.+.++.-++||+++++ +....-..-||-- ..+........+..+.|+|++.+.+++ .| |.|++=| ..
T Consensus 143 ~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~ 216 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG---GQIQFSDDPD 216 (302)
T ss_dssp ----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT---TEEEEEE-TT
T ss_pred CcceeEeEEECCCCcEEEE--ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC---cEEEEccCCC
Confidence 3578899999999998886 3333344456542 222223356788999999999987765 22 5788776 23
Q ss_pred CCEEEEE------eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec-----ccceeeEEEcC
Q 013884 270 DGKQLGT------TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----DKLFQAEWKPV 335 (434)
Q Consensus 270 ~~~~i~~------~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~-----~~~~~~~w~p~ 335 (434)
+.+.... .....+..++|.++++..+++.. +++..=.=.|+...+.+. ..||.+.|.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-------ccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 3333222 12235677999999888887764 443333334444444322 35777777654
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.23 E-value=12 Score=36.87 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=55.0
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC----CCCC--------------EEEEEE
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS----PDGR--------------YFMTAT 298 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws----pdg~--------------~l~tas 298 (434)
..+.+|..+|+|++.++.. .-|.|.++|+.++..+...++..--.|.|- ...+ .+...-
T Consensus 308 R~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 4467899999999888864 458999999999988877777543344442 1111 233334
Q ss_pred cCCceeeCCcEEEEee-cCceeeeeec
Q 013884 299 TAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
..|| -+.|-||.+ +|..+...+.
T Consensus 385 yapr---Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPR---RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred Eecc---CCeEEEEecCCCCEEEEEEe
Confidence 4455 578899998 6666665443
No 419
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.79 E-value=55 Score=32.80 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCCeEEEEECcCC------CEEEEEEccC--------CCeEEEEecc--------ceeEEE-cC---CcCeeEEEECCCC
Q 013884 195 EGPVHDVQWSYSG------SEFAVVYGFM--------PASATIFNKK--------CRPILE-LG---SGPYNTVRWNPKG 248 (434)
Q Consensus 195 ~~~i~~~~wspdg------~~~av~~g~~--------~~~i~l~d~~--------~~~~~~-~~---~~~~~~i~~sP~g 248 (434)
++...+|+++|+= .+|.+.+... ...|.-|.+. ...+.. +. ...-..|.|.|||
T Consensus 78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG 157 (454)
T TIGR03606 78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG 157 (454)
T ss_pred CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC
Confidence 5778999999873 3455544221 2244445432 112221 21 1223468999999
Q ss_pred CeEEEEe
Q 013884 249 KFLCLAG 255 (434)
Q Consensus 249 ~~l~~~~ 255 (434)
.+.++.|
T Consensus 158 ~LYVs~G 164 (454)
T TIGR03606 158 KIYYTIG 164 (454)
T ss_pred cEEEEEC
Confidence 8666554
No 420
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.08 E-value=0.78 Score=46.37 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=45.4
Q ss_pred eeeecC-CCcEEEEecCCeEEEEeC-CCCCCceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 54 SIRFSS-DEAVACRMATNEIQFFDT-TDFPKGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~-d~~~la~~~~~~i~v~~~-~~~~~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+...| ...|++...++.|-+||. .+.+.....-++.+ .+..++|+|.....+++...++ +.|++|++.
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS----~tIrlydi~ 275 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS----ITIRLYDIC 275 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc----ceEEEeccc
Confidence 345566 678999889999999994 33332222222322 3788999998766666655443 477887764
Q ss_pred C
Q 013884 127 K 127 (434)
Q Consensus 127 ~ 127 (434)
.
T Consensus 276 ~ 276 (783)
T KOG1008|consen 276 V 276 (783)
T ss_pred c
Confidence 3
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.83 E-value=51 Score=31.09 Aligned_cols=92 Identities=18% Similarity=0.376 Sum_probs=49.2
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
..+.++.+.-++||++++++..|+ -+.-||-- ..+.........+..+.|+||+...+++ . .+.|+.=
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~---~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s 212 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGN---FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQFS 212 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSS---EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECccc---EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEEc
Confidence 457788899999999999987554 44456643 2344444444466679999999887765 4 6666666
Q ss_pred e--ecCceeeeeec------ccceeeEEEcCC
Q 013884 313 H--HNGSLFFKKMF------DKLFQAEWKPVS 336 (434)
Q Consensus 313 ~--~~g~~~~~~~~------~~~~~~~w~p~~ 336 (434)
+ -+++...+... -.+..+.|+|..
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 6 22333222111 137888998764
No 422
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.53 E-value=33 Score=34.75 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=44.0
Q ss_pred CCCeEEEEeccceeEEEcCCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-----eEEEECC
Q 013884 217 MPASATIFNKKCRPILELGSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-----VTSEWSP 289 (434)
Q Consensus 217 ~~~~i~l~d~~~~~~~~~~~~~~~--~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-----~~~~wsp 289 (434)
......++|.++.....+...... .+..-++|.+++..+ ..+..+|.. |+.+........ -.+..-|
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcCC-CCEEEeeecCCcccccccccEECC
Confidence 344777888888877665322222 277889999998765 478888875 555554444331 1288899
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
+|.+|+.+..
T Consensus 200 nGn~L~l~~~ 209 (477)
T PF05935_consen 200 NGNLLILASE 209 (477)
T ss_dssp TS-EEEEEEE
T ss_pred CCCEEEEEee
Confidence 9999999883
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.27 E-value=63 Score=31.98 Aligned_cols=184 Identities=12% Similarity=0.131 Sum_probs=79.8
Q ss_pred ecCCCcEEEEe-cC------CeEEEEeCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEE-E-ec---------CC--
Q 013884 57 FSSDEAVACRM-AT------NEIQFFDTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAV-F-VP---------ES-- 113 (434)
Q Consensus 57 ~S~d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~-~-~~---------~~-- 113 (434)
--|+|.+++++ ++ +.+.++|...++........ ..--.+|-|.|..+.+|.. | .| +.
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 34789877775 21 37888888776543222221 1123467777865444432 1 11 10
Q ss_pred -CCCCceEEEEEcCCCCCCCceeeeeecccc----eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eCCCc
Q 013884 114 -KGSPASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TDGTH 186 (434)
Q Consensus 114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~~~~ 186 (434)
..--.++.+|++.. .+.+.++.+.... .+.+.++|+..+-.+.+. ... ++|.+- ..+..
T Consensus 217 ~~~yG~~l~vWD~~~---r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss---------~i~~~~k~~~g~W 282 (461)
T PF05694_consen 217 AGKYGHSLHVWDWST---RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSS---------SIWRFYKDDDGEW 282 (461)
T ss_dssp HH-S--EEEEEETTT---TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----E---------EEEEEEE-ETTEE
T ss_pred cccccCeEEEEECCC---CcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccc---------eEEEEEEcCCCCe
Confidence 01124899999988 7777777665432 244556777665433321 111 122221 11111
Q ss_pred --eeeeecCC------------------CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEc--C-----
Q 013884 187 --EGLVPLRK------------------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--G----- 235 (434)
Q Consensus 187 --~~~v~l~~------------------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~--~----- 235 (434)
+..+.+.. .+-|.+|..|.|.++|.+ ++.+.+.++-||+. -+.+.+. +
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv-s~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~ 361 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV-SNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRK 361 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE-EETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE-EcccCCcEEEEecCCCCCCcEEeEEEECcEecc
Confidence 11222110 356789999999988887 68999999999985 1222221 1
Q ss_pred -----------CcCeeEEEECCCCCeEEEEe
Q 013884 236 -----------SGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 236 -----------~~~~~~i~~sP~g~~l~~~~ 255 (434)
.+.-+-+..|-||+.|.+..
T Consensus 362 ~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 362 GDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 11225578888888777654
No 424
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=79.58 E-value=56 Score=30.79 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=48.3
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce-------EEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV-------TSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~-------~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
.+|+|..-++|.+|+++-.- ..|.+.|.++++.+..+.+..-. .++|-.|-+++-.... ++.|.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~---~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~------~~~Is 215 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNT---STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND------DGTIS 215 (299)
T ss_pred EeeeeeecCCccEEEEeccc---CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC------CCEEE
Confidence 46889999999999887633 48999999999999998776222 2455555444433333 77888
Q ss_pred EEee
Q 013884 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|+|=
T Consensus 216 lFDN 219 (299)
T PF14269_consen 216 LFDN 219 (299)
T ss_pred EEcC
Confidence 8875
No 425
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.48 E-value=67 Score=31.65 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=59.6
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-----eEEEcC----CcCeeEEEECCCCCeEEEEecCCC
Q 013884 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELG----SGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 189 ~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-----~~~~~~----~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
.+.......+.++.|.+++..+++ + ..+.+..-+-.+. ...... ...+..+.|.+++..+++|.
T Consensus 274 ~~~~~~~~~l~~v~~~~dg~l~l~--g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~---- 346 (398)
T PLN00033 274 PHNRASARRIQNMGWRADGGLWLL--T-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG---- 346 (398)
T ss_pred EecCCCccceeeeeEcCCCCEEEE--e-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC----
Confidence 344445678899999999887764 3 3445444332222 122221 12477899999998887764
Q ss_pred CCeEEEEEccCCEEEEEeeC-----CCceEEEECCCCCEEEEEE
Q 013884 260 PGDMAFWDYVDGKQLGTTRA-----ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~-----~~~~~~~wspdg~~l~tas 298 (434)
.|.+... ...++.-..... .+...+.|.++++-++++.
T Consensus 347 ~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 347 SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 3445544 344443322221 1344588888888888775
No 426
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.38 E-value=72 Score=31.98 Aligned_cols=51 Identities=10% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeee-------eecCCeeEEEEeCC
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYR-------LRVPGVAAFEVSKA 101 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~-------~~~~~v~~~~~sp~ 101 (434)
..| .+.|.|||++|++-- .+.|++++........... ....+...++++|+
T Consensus 31 ~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred Cce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 567 899999999999886 5899999765432111111 12357889999987
No 427
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=78.49 E-value=2 Score=34.66 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.5
Q ss_pred CCCCCccCCCCcCChh
Q 013884 377 ATKPAAYRPPHAKQAA 392 (434)
Q Consensus 377 ~~~~~~y~pp~~~~~~ 392 (434)
+...+.||||++|++.
T Consensus 83 ~~~~gvY~PP~~R~~~ 98 (129)
T PF15359_consen 83 ATTSGVYRPPAARNTT 98 (129)
T ss_pred CCCCceecCccccccc
Confidence 3455699999999875
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.97 E-value=1.1e+02 Score=33.36 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=112.6
Q ss_pred eecCCC--cEEEEecCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec---CCC---C---CCceEEEE
Q 013884 56 RFSSDE--AVACRMATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP---ESK---G---SPASVQIY 123 (434)
Q Consensus 56 ~~S~d~--~~la~~~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~---~~~---~---~~~~v~i~ 123 (434)
.|+.|. ..++.+..+.+.+..++...+....++.. +..+.+.+.+. ...+++... .+. + .-..++++
T Consensus 677 ~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred ccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 455443 46667777888888887765544444432 23445555542 222222211 001 1 12345666
Q ss_pred EcCCCCCCCceeeeeecc----cceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe
Q 013884 124 ACGKDLQSQPLARRSFFR----CSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 124 ~~~~~~~~~~i~~~~~~~----~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
+-.+ .+.++...+.. ...++..+..| ++++++.+.--.......-.|.--++.++-.+.-+.......+|.+
T Consensus 756 D~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 756 DQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV 832 (1096)
T ss_pred cCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce
Confidence 6544 33444333322 12344556666 6776665433111111111132223333221111111112225666
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEE--EEccCCEE
Q 013884 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF--WDYVDGKQ 273 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i--wd~~~~~~ 273 (434)
.++.-- +|+.+|-+ ...+++|+...+ .++. -+..++..+...-.|..+++|. +.+.+.+ |+...+..
T Consensus 833 ~aL~~f-ngkllA~I----n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD---lm~Sitll~y~~~eg~f 904 (1096)
T KOG1897|consen 833 YALVEF-NGKLLAGI----NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD---LMRSITLLQYKGDEGNF 904 (1096)
T ss_pred eehhhh-CCeEEEec----CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee---ccceEEEEEEeccCCce
Confidence 666543 57777743 458999998655 3222 1466778888899999999987 4445554 44444323
Q ss_pred EEE---eeCCCceEEEECCCCCEE
Q 013884 274 LGT---TRAECSVTSEWSPDGRYF 294 (434)
Q Consensus 274 i~~---~~~~~~~~~~wspdg~~l 294 (434)
+-. +...+.+.+++--+..|+
T Consensus 905 ~evArD~~p~Wmtaveil~~d~yl 928 (1096)
T KOG1897|consen 905 EEVARDYNPNWMTAVEILDDDTYL 928 (1096)
T ss_pred EEeehhhCccceeeEEEecCceEE
Confidence 222 222355556665444443
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.72 E-value=76 Score=31.29 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=69.5
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK- 272 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~- 272 (434)
....+.-++||..+++ |..-.-+.-+|--. .++..-....+..+.|.++|.+++++.. |.+. +....++
T Consensus 240 sf~~v~~~~dG~~~~v--g~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~----G~l~-~S~d~G~~ 312 (398)
T PLN00033 240 TFSTVNRSPDGDYVAV--SSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG----GGLY-VSKGTGLT 312 (398)
T ss_pred ceeeEEEcCCCCEEEE--ECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC----ceEE-EecCCCCc
Confidence 3445566677766653 33221222233211 1122123456788999999998877643 3443 3333432
Q ss_pred ----EEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee-----cccceeeEEEcCCCC
Q 013884 273 ----QLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM-----FDKLFQAEWKPVSPD 338 (434)
Q Consensus 273 ----~i~~~~~----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~-----~~~~~~~~w~p~~~~ 338 (434)
....... ..+..+.+.+|+..++++. ++.+....-.|+...... ..+||.+.|.+....
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 2222221 1356688999988777664 566666655555544322 247888888765443
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=77.68 E-value=68 Score=30.72 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEE-Eeccc---eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATI-FNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l-~d~~~---~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
..+.++++.+.|++..++ .|.. +.+.. +|-.+ ..+.......++.+.+.|+|+.++++. .|.+.+=..+
T Consensus 171 ~~g~~~~i~~~~~g~~v~--~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d 243 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVA--VSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPD 243 (334)
T ss_pred CcceEEEEEECCCCeEEE--EeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCC
Confidence 357889999999886555 3442 33332 22222 122222356778899999999887764 3455433344
Q ss_pred CCEEEEEeeC------CCceEEEECCCCCEEEEEE
Q 013884 270 DGKQLGTTRA------ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 270 ~~~~i~~~~~------~~~~~~~wspdg~~l~tas 298 (434)
.++.-..... .....+.+.|+++.++++.
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 4432221111 2345588999888666553
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.55 E-value=11 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=19.1
Q ss_pred CeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 53 PSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 53 ~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
.+++||.||+++ .+.++.|+|.+...
T Consensus 8 ~~l~WS~Dg~la-V~t~~~v~IL~~~~ 33 (173)
T PF12657_consen 8 NALAWSEDGQLA-VATGESVHILDPQT 33 (173)
T ss_pred cCeeECCCCCEE-EEcCCeEEEEeccC
Confidence 379999999654 46677888885443
No 432
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.36 E-value=1.2e+02 Score=33.24 Aligned_cols=109 Identities=10% Similarity=0.192 Sum_probs=65.2
Q ss_pred CeEEEEECcC-CCEEEEEEcc--------CCCeEEEEeccc-eeEEEcC----CcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 197 PVHDVQWSYS-GSEFAVVYGF--------MPASATIFNKKC-RPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 197 ~i~~~~wspd-g~~~av~~g~--------~~~~i~l~d~~~-~~~~~~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
.|.+..|..| +.+++|-++. ..|.+.+|.... +.+...+ .+.+.++.- =+|++||. .+ ..
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In---~~ 849 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--IN---QS 849 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cC---cE
Confidence 3455568877 6677764443 224677775532 2222222 344444332 14776654 33 38
Q ss_pred EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
|++|+..+.+.+..-..+ .+..+...-.|..+++|.. -+.|.+-.|.+.
T Consensus 850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl------m~Sitll~y~~~ 900 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL------MRSITLLQYKGD 900 (1096)
T ss_pred EEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec------cceEEEEEEecc
Confidence 999998887655544333 4455888888999999987 677776666443
No 433
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.26 E-value=69 Score=30.55 Aligned_cols=63 Identities=6% Similarity=0.030 Sum_probs=40.0
Q ss_pred eEEecCCCcEEEEEecCC-CCCCCcEEEEEcCCCcEEEEEeecC------------cCCCCCCeeeecCCCcEEEEe
Q 013884 4 LLTCLRVGLIIQTFQKSS-TPQEKNVILWKTETGEAVYQLFQKN------------MTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-~~~d~~v~iWd~~~g~~~~~~~~~~------------~~~~~~~~~~~S~d~~~la~~ 67 (434)
+|++.++|.++++.+... ......|..++.. |+.+..+.... ....+...++++|||+.|..+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 578889999999988320 1112788888865 76655542111 012456689999999954443
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.99 E-value=56 Score=29.42 Aligned_cols=87 Identities=14% Similarity=0.251 Sum_probs=53.4
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEe--ccc------eeEEEcCC-cC-----eeEEEECCCCCeEEEEecCCCCCeE
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFN--KKC------RPILELGS-GP-----YNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d--~~~------~~~~~~~~-~~-----~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
-+.++|+-|-+.|.++ .+.+-.|.-|| ..+ ..++.+.+ .+ -..++..-.|.+.+.. + ..|+|
T Consensus 160 sNgl~Wd~d~K~fY~i-Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-~--ng~~V 235 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYI-DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-F--NGGTV 235 (310)
T ss_pred CccccccccCcEEEEE-ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-e--cCcEE
Confidence 3579999999999886 44555676666 322 22333321 11 1123334455544433 3 23699
Q ss_pred EEEEccCCEEEEEeeCC--CceEEEEC
Q 013884 264 AFWDYVDGKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~--~~~~~~ws 288 (434)
.-.|..+++.+..+.-+ .+++|+|-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEec
Confidence 99999999988877655 67778885
No 435
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=76.47 E-value=52 Score=31.05 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCcee-------e-------CCcEE
Q 013884 247 KGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ-------I-------DNGIK 310 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~-------~-------D~~i~ 310 (434)
+|++.++-. ..|.+.-+|.++| +.+..+.+ .+..++|. |++++++.+-||.. + ..++.
T Consensus 212 dgrLwvlds---gtGev~~vD~~~G~~e~Va~vpG-~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~ 285 (335)
T TIGR03032 212 QGKLWLLNS---GRGELGYVDPQAGKFQPVAFLPG-FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA 285 (335)
T ss_pred CCeEEEEEC---CCCEEEEEcCCCCcEEEEEECCC-CCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence 466555443 3478999998877 44544443 45558888 99999999877721 1 24677
Q ss_pred EEee-cCceeeeeec----ccceeeEEEcCC
Q 013884 311 IFHH-NGSLFFKKMF----DKLFQAEWKPVS 336 (434)
Q Consensus 311 iw~~-~g~~~~~~~~----~~~~~~~w~p~~ 336 (434)
|-|+ +|..++-..+ +|+|+|.--|.-
T Consensus 286 vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 286 VIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 8887 6776655544 689999988853
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.85 E-value=5.4 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=29.1
Q ss_pred ceEEecC----CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884 3 LLLTCLR----VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 3 ~~l~fSP----~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
.++++++ +..+|+|.+ .|+.|+|||+.+++++.+...
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~-----~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLS-----RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEEE-----ETTTEEEEEE-----TTSEEEEEETTTTCEEEEEET
T ss_pred ceEEEecceeCCCCEEEEEe-----CCCeEEEEECCCCeEEEEecc
Confidence 3455666 778999999 899999999999999887643
No 437
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=75.52 E-value=18 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.5
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
..-|.|.++|++++|.++.. ..+.|.+|.+++
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~--~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASS--LAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEec--cCCeEEEEEecC
Confidence 44588999999999999875 347899998653
No 438
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=75.38 E-value=16 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.435 Sum_probs=33.3
Q ss_pred CeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 261 GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
|.|..||.++.+.+ ..+ .....+..|||+++|.+++.. .+.|++++..
T Consensus 36 ~~Vvyyd~~~~~~v--a~g~~~aNGI~~s~~~k~lyVa~~~-----~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVV--ASGFSFANGIAISPDKKYLYVASSL-----AHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEe--eccCCCCceEEEcCCCCEEEEEecc-----CCeEEEEEec
Confidence 46777775443222 222 244568999999999999885 8899998764
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.15 E-value=58 Score=28.78 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=39.4
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013884 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG 83 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~ 83 (434)
-|.+||. |+.-.++|..+-+++..|.... ++| .+ ..|++-|..+ +..++++-|..++...
T Consensus 103 ~y~LTw~------egvaf~~d~~t~~~lg~~~y~G---eGW-gL--t~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 103 FYQLTWK------EGVAFKYDADTLEELGRFSYEG---EGW-GL--TSDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred EEEEEec------cceeEEEChHHhhhhcccccCC---cce-ee--ecCCcceEeeCCceEEEecCHHHhhhc
Confidence 3566664 6777888988888888776543 788 54 3455545444 4457888777776543
No 440
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=74.84 E-value=1.1e+02 Score=31.86 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=44.5
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
-.++.|||+++|+-.....+.+--++++-|+.+|+.+..... .....+.|.+|++.|...
T Consensus 132 g~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~-----~~~~~~~Wa~d~~~lfYt 191 (682)
T COG1770 132 GAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT-----NTSGSFAWAADGKTLFYT 191 (682)
T ss_pred eeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc-----ccccceEEecCCCeEEEE
Confidence 467889999999977655555566899999999987544322 223478999999877665
No 441
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=74.74 E-value=88 Score=30.58 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=52.9
Q ss_pred CCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CC-ceEEEECCCCC
Q 013884 217 MPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--EC-SVTSEWSPDGR 292 (434)
Q Consensus 217 ~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~-~~~~~wspdg~ 292 (434)
.++.+.-+|.+ ++.+-....+....+. ..+..|++++ .+|.+..+|..+++.+..... .. ...... .+.
T Consensus 264 ~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g 336 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG 336 (394)
T ss_pred cCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence 45678878875 3333332211111122 2355666665 457999999999987765432 11 111111 245
Q ss_pred EEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 293 YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+|+.++. |+.+.+.|. +|+.+.+.
T Consensus 337 ~l~v~~~------~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 337 YLVVGDS------EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEEEeC------CCEEEEEECCCCCEEEEE
Confidence 6677777 888888887 66665544
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=74.73 E-value=51 Score=33.12 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFE 97 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~ 97 (434)
..+.-.|++-|+.+..+..+ ..+ .++|.|+ ++.|+..+++.|.-.|..-.+......-..+-+....
T Consensus 490 ~kLykmDIErGkvveeW~~~----ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~ 564 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLK----DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK 564 (776)
T ss_pred ccceeeecccceeeeEeecC----Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccc
Confidence 45666788899999888776 344 5788885 4556666677766666543221111111111122223
Q ss_pred EeCC---CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 98 VSKA---PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 98 ~sp~---~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
||.. ...+||+ .+..|.|++|+--. ...-..+......+..+.-+.+|++|++.+
T Consensus 565 Fss~~tTesGyIa~-----as~kGDirLyDRig---~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 565 FSSGMTTESGYIAA-----ASRKGDIRLYDRIG---KRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ccccccccCceEEE-----ecCCCceeeehhhc---chhhhcCcccccceeeeEeecCCcEEEEee
Confidence 3332 1345553 24557899998533 222333444555566677788999987754
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.62 E-value=15 Score=36.84 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=41.8
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEE--E---EEc----cCCEEEEE------------eeCC-CceEEEECCCC---CE
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMA--F---WDY----VDGKQLGT------------TRAE-CSVTSEWSPDG---RY 293 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~--i---wd~----~~~~~i~~------------~~~~-~~~~~~wspdg---~~ 293 (434)
+..+..||.|..++++| .+|-+. + |-. ++++.+.. -..+ .....+|+|++ .+
T Consensus 106 V~~vl~s~~GS~VaL~G---~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIG---IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEecCCCceEEEec---CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45677788888888888 344332 2 321 23321111 0111 22338999997 67
Q ss_pred EEEEEcCCceeeCCcEEEEeecC
Q 013884 294 FMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|+.-++ ||.||||+.+.
T Consensus 183 L~iL~s------dnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTS------DNVIRIYSLSE 199 (741)
T ss_pred EEEEec------CcEEEEEecCC
Confidence 777777 99999999854
No 444
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.46 E-value=95 Score=30.80 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCCCeEEEEECc-----CCCEEEEEEccCCCeEEEEecc---ce-------eE-----EEcCCcCeeEEEECCCC----
Q 013884 193 RKEGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKK---CR-------PI-----LELGSGPYNTVRWNPKG---- 248 (434)
Q Consensus 193 ~~~~~i~~~~wsp-----dg~~~av~~g~~~~~i~l~d~~---~~-------~~-----~~~~~~~~~~i~~sP~g---- 248 (434)
+-+.||..+..-. +...+||. .|.++.+|.+. +. .+ +.+.... -.+++-|-|
T Consensus 69 ~l~~PILqv~~G~F~s~~~~~~LaVL---hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a-~nm~~G~Fgg~~~ 144 (418)
T PF14727_consen 69 QLKDPILQVECGKFVSGSEDLQLAVL---HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTA-YNMCCGPFGGVKG 144 (418)
T ss_pred ecCCcEEEEEeccccCCCCcceEEEe---cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccce-eEEEEEECCCCCC
Confidence 3367888877543 34577765 47799999762 11 01 1111222 223333322
Q ss_pred -CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 249 -KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 249 -~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
.+||+-+ +||.+.||+-+.......+... -+.-+.+.|.-..|+++++ +..+..|.|
T Consensus 145 ~~~IcVQS---~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss------s~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQS---MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS------SWTLECYKY 203 (418)
T ss_pred ceEEEEEe---cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC------ceeEEEecH
Confidence 3677766 7899999998776544444442 1223788888889999988 666677766
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=73.95 E-value=15 Score=36.34 Aligned_cols=40 Identities=13% Similarity=-0.035 Sum_probs=32.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN 46 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~ 46 (434)
+.+|..||+|++.++.. .=+.|.|+|+.++..++-+.+-.
T Consensus 310 ~~~i~~sP~~~laA~tD-----slGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTD-----SLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred EEEEEECCCCCEEEEEc-----CCCcEEEEECCCChhhhhhccCc
Confidence 46789999999888854 44899999999998887776543
No 446
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=73.52 E-value=65 Score=31.70 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=45.0
Q ss_pred cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------CCceEEEEC-----CCC---CEEE
Q 013884 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------ECSVTSEWS-----PDG---RYFM 295 (434)
Q Consensus 234 ~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------~~~~~~~ws-----pdg---~~l~ 295 (434)
...+++++++.| |=-|+|+|- .+|.+.|.|++.-..|....- ..++.++|+ -|+ -.++
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 357888888887 455788776 558999999987777665221 134456665 233 4567
Q ss_pred EEEcCCceeeCCcEEEEee
Q 013884 296 TATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 296 tas~~~rl~~D~~i~iw~~ 314 (434)
+++. .|.+.+|.+
T Consensus 160 vGTn------~G~v~~fkI 172 (395)
T PF08596_consen 160 VGTN------SGNVLTFKI 172 (395)
T ss_dssp EEET------TSEEEEEEE
T ss_pred EEeC------CCCEEEEEE
Confidence 7777 788888876
No 447
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.42 E-value=70 Score=28.84 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCC----------eEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPA----------SATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~----------~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
+...++-..+|+|++|+ |.|-- .++.|-...+.-.-+ .-+--|.++|+-+-+.+..... ++..|
T Consensus 108 knR~NDgkvdP~Gryy~---GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG---GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEV 182 (310)
T ss_pred hcccccCccCCCCceee---eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc--CceEE
Confidence 34556677789999876 55532 223332221111111 1233477999988886665532 55678
Q ss_pred EEEE--ccCC-----EEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee--cccc
Q 013884 264 AFWD--YVDG-----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM--FDKL 327 (434)
Q Consensus 264 ~iwd--~~~~-----~~i~~~~~~------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~--~~~~ 327 (434)
.-|| ..++ +.+..+... ..-.++...+|..+++.-. .++|...|. +|+++.+.. ...+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEcCCCce
Confidence 7787 4444 333333221 1112555667776666555 566666665 777776653 3567
Q ss_pred eeeEEEc
Q 013884 328 FQAEWKP 334 (434)
Q Consensus 328 ~~~~w~p 334 (434)
.+++|--
T Consensus 257 tsccFgG 263 (310)
T KOG4499|consen 257 TSCCFGG 263 (310)
T ss_pred EEEEecC
Confidence 7777653
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.29 E-value=37 Score=34.02 Aligned_cols=57 Identities=11% Similarity=0.241 Sum_probs=39.0
Q ss_pred CeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
-|||+|+ ..|.|++||.-..+--..+.+ ..+..+..+.+|++|+..+ .+.+.+-|+.
T Consensus 574 GyIa~as---~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-------k~yllL~d~~ 632 (776)
T COG5167 574 GYIAAAS---RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-------KNYLLLTDVP 632 (776)
T ss_pred ceEEEec---CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-------cceEEEEecc
Confidence 3788887 557999999754432222222 3566689999999988665 5677777763
No 449
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=72.18 E-value=1.3e+02 Score=31.42 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=100.9
Q ss_pred eeeecCCCcEEEEecC---C---eEEEEeCCCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 54 SIRFSSDEAVACRMAT---N---EIQFFDTTDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~---~---~i~v~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+.-|||++++|.+.| + +|+|.|+.+... ....+.+ ..++.|++++....-+... ....|..|.-..+.
T Consensus 133 ~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~---~~d~i~~~~~~~~Wa~d~~~lfYt~~d-~~~rp~kv~~h~~g 208 (682)
T COG1770 133 AASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEE---LPDEITNTSGSFAWAADGKTLFYTRLD-ENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeCCCCceEEEEEecccccEEEEEEEecccccc---cchhhcccccceEEecCCCeEEEEEEc-CCCCcceEEEEecC
Confidence 4678999999999854 2 789999877542 1122233 5678999984433322222 33466666655554
Q ss_pred CCCCCCceeeeeecccc---eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCC-CCCeEEE
Q 013884 127 KDLQSQPLARRSFFRCS---TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-EGPVHDV 201 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-~~~i~~~ 201 (434)
+. ......-+...+ ...+.-+.+..+|++.... . .+..+++++..... ...+-+.. ++--+.+
T Consensus 209 t~---~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~---~------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~ 276 (682)
T COG1770 209 TP---GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGS---H------ITSEVRLLDADDPEAEPKVVLPRENGVEYSV 276 (682)
T ss_pred CC---CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCC---C------cceeEEEEecCCCCCceEEEEEcCCCcEEee
Confidence 31 011111111111 1223334455666554311 1 12235566543321 11111111 1222222
Q ss_pred EECcCCCEEEEEEccCCCeEEEEeccc------eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKKC------RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~~------~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
. .-+..|.+.+........|+-... -....-|...+.--.++-..++|++.-..+.-..|.++|.++++...
T Consensus 277 e--h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~ 354 (682)
T COG1770 277 E--HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG 354 (682)
T ss_pred e--ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence 2 236677766554333444443211 11111244455555666667888887655555689999998775443
No 450
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=67.03 E-value=40 Score=35.16 Aligned_cols=69 Identities=23% Similarity=0.589 Sum_probs=47.0
Q ss_pred CCCCCeEEEEEC--cCCCEEEEEEccCCCeEEEEec-c---------ceeEE-----EcCCcCeeEEEECCCCCeEEEEe
Q 013884 193 RKEGPVHDVQWS--YSGSEFAVVYGFMPASATIFNK-K---------CRPIL-----ELGSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 193 ~~~~~i~~~~ws--pdg~~~av~~g~~~~~i~l~d~-~---------~~~~~-----~~~~~~~~~i~~sP~g~~l~~~~ 255 (434)
...++|.++.|. |||..+..| |+ +..|.+|-. + ..++. ++...++.+..|-++|.+++.+|
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaV-Gf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAV-GF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEE-Ec-CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 447899999998 566655543 55 568887732 1 11222 23457899999999999887655
Q ss_pred cCCCCCeEEEEEc
Q 013884 256 FGNLPGDMAFWDY 268 (434)
Q Consensus 256 ~~~~~g~i~iwd~ 268 (434)
| .+.|+|.
T Consensus 148 --N---qlfv~dk 155 (631)
T PF12234_consen 148 --N---QLFVFDK 155 (631)
T ss_pred --C---EEEEECC
Confidence 4 8999874
No 451
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.36 E-value=50 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecC
Q 013884 217 MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 217 ~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~ 257 (434)
..|.+..||.+++.+..+ +-..-|-|+.|||+.+|+++-..
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 446788888887665544 23456889999999999988643
No 452
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=65.81 E-value=58 Score=31.43 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=50.5
Q ss_pred EEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-----EEEEE-eeCCC
Q 013884 210 FAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-----KQLGT-TRAEC 281 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-----~~i~~-~~~~~ 281 (434)
|++..+...|++..||...+....+ .-..-|-++.|||+.+++++-... ..-.+.| ++.. +.... +.+ .
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-~ri~ryw-i~g~k~gt~EvFa~~LPG-~ 266 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT-ARIKRYW-IKGPKAGTSEVFAEGLPG-Y 266 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc-ceeeeeE-ecCCccCchhhHhhcCCC-C
Confidence 4555666677888899877666554 334568899999999999986542 1222344 3211 11111 111 2
Q ss_pred ceEEEECCCCCEEEEE
Q 013884 282 SVTSEWSPDGRYFMTA 297 (434)
Q Consensus 282 ~~~~~wspdg~~l~ta 297 (434)
.-.+.-+++|.+-+.-
T Consensus 267 PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 267 PDNIRRDSTGHFWVAL 282 (376)
T ss_pred CcceeECCCCCEEEEE
Confidence 2236777888765544
No 453
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=65.50 E-value=1.2e+02 Score=28.40 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=59.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
..+.||-+=-|++- ++.-++|.|+.+-+......+-+. ..+ .-.|.=.|+++.... ++-+.++|+.+.+
T Consensus 90 ~Dv~vse~yvyvad-------~ssGL~IvDIS~P~sP~~~~~lnt--~gy-aygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 90 ADVRVSEEYVYVAD-------WSSGLRIVDISTPDSPTLIGFLNT--DGY-AYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred heeEecccEEEEEc-------CCCceEEEeccCCCCcceeccccC--Cce-EEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 34455544444443 346799999987765444333221 344 456666788877764 7788899998866
Q ss_pred Ccee-eeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 82 KGIL-YRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 82 ~~~~-~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
.... -+.... ....+.+|-+ --+++.| ++-+.|.++.+.
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn-~AYvA~~-------d~GL~ivDVSnp 201 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGN-YAYVAWR-------DGGLTIVDVSNP 201 (370)
T ss_pred CceeeeeeccCCCCceeEEEecC-eEEEEEe-------CCCeEEEEccCC
Confidence 5322 122222 1235555533 1223332 123577777663
No 454
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=64.47 E-value=95 Score=26.87 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCEEEEEEccCC-------CeEEEEeccceeEEEcC------CcCeeEEEECCCCCeEEEEec--CC--CCCeEEEEEc
Q 013884 206 SGSEFAVVYGFMP-------ASATIFNKKCRPILELG------SGPYNTVRWNPKGKFLCLAGF--GN--LPGDMAFWDY 268 (434)
Q Consensus 206 dg~~~av~~g~~~-------~~i~l~d~~~~~~~~~~------~~~~~~i~~sP~g~~l~~~~~--~~--~~g~i~iwd~ 268 (434)
++++-|.+-|-.+ |.|+|+|+.......+. ...-..+.|--|..++++-|+ |. ..|.++++++
T Consensus 68 ~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl 147 (200)
T PF15525_consen 68 NGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNL 147 (200)
T ss_pred CCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEc
Confidence 4556565555432 48999998755444331 111126888888888887764 32 3689999999
Q ss_pred cCCEEEEEeeC
Q 013884 269 VDGKQLGTTRA 279 (434)
Q Consensus 269 ~~~~~i~~~~~ 279 (434)
.+++....+..
T Consensus 148 ~tg~~~~ly~~ 158 (200)
T PF15525_consen 148 NTGNLTELYEW 158 (200)
T ss_pred cCCceeEeeec
Confidence 99866555543
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=63.91 E-value=1.1e+02 Score=27.25 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCeEEEEecc---ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCC---eEEEE
Q 013884 218 PASATIFNKK---CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG---DMAFW 266 (434)
Q Consensus 218 ~~~i~l~d~~---~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g---~i~iw 266 (434)
..+|.+|++. +..+..| .-+.+..+.++..|+||++--..+... .+++|
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3489999985 4556666 458899999999999999987666555 55554
No 456
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=63.86 E-value=22 Score=31.65 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=30.7
Q ss_pred EccCCCeEEEEeccceeEEEc---CC-cCeeEEEECCCCCeEEEE--ecCCCCCeEEEEEccC
Q 013884 214 YGFMPASATIFNKKCRPILEL---GS-GPYNTVRWNPKGKFLCLA--GFGNLPGDMAFWDYVD 270 (434)
Q Consensus 214 ~g~~~~~i~l~d~~~~~~~~~---~~-~~~~~i~~sP~g~~l~~~--~~~~~~g~i~iwd~~~ 270 (434)
++..++.++.++.+....... |+ .+...+..+-.+++|+++ +.+ -.+++|++..
T Consensus 119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d---~~~k~W~ve~ 178 (238)
T KOG2444|consen 119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHD---RVLKKWNVEK 178 (238)
T ss_pred EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccc---hhhhhcchhh
Confidence 577789999999875443322 33 344444445555555555 322 3566666543
No 457
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=65 Score=34.74 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=53.4
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--------C
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--------A 219 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~--------~ 219 (434)
..+||..++++.... ...--.++++.-.++.+.... ....+......+..+.|+|.++.++.+....- .
T Consensus 103 ~~s~d~~~~~~~~~~-~~~~rhs~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~ 179 (755)
T KOG2100|consen 103 LISPDRKYILLGRNY-KKRFRHSYTAKYHLYDLNTGE--KLHPPEYEGSKIQYASWSPLGNDLAYVLHNNIYYQSSEEDE 179 (755)
T ss_pred ccChhhhhheeccCc-ccccceeeEEEEEEEEcCCCC--cccCcccCCCeeEEEEEcCCCCEEEEEEecccccccCcCCC
Confidence 456777766553221 112222444444444443333 11222222455688999999999887654210 0
Q ss_pred eE-EEEeccceeEEEcC---------CcCeeEEEECCCCCeEEEEecC
Q 013884 220 SA-TIFNKKCRPILELG---------SGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 220 ~i-~l~d~~~~~~~~~~---------~~~~~~i~~sP~g~~l~~~~~~ 257 (434)
.+ .+++-....++..- -.....+-|||+|..++.+.+.
T Consensus 180 ~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~ 227 (755)
T KOG2100|consen 180 DVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFN 227 (755)
T ss_pred ceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEec
Confidence 11 11211111122111 1233567899999999976553
No 458
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.66 E-value=29 Score=26.34 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.5
Q ss_pred eeeecCCCcEEEEecCCeEE-EEeCCC
Q 013884 54 SIRFSSDEAVACRMATNEIQ-FFDTTD 79 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~-v~~~~~ 79 (434)
.+.||.|+..++...++..+ +||...
T Consensus 59 ~I~Wsedg~~a~L~Ingy~hA~FDF~~ 85 (97)
T PF10008_consen 59 SICWSEDGQKAALLINGYPHAVFDFAN 85 (97)
T ss_pred EEEEcccccEEEEEECCcEEEEEEecc
Confidence 78999999999988887654 566544
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=61.24 E-value=1.4e+02 Score=27.72 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=69.3
Q ss_pred EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CCcCeeEEEECCCCCe
Q 013884 177 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 177 l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~~~~~~i~~sP~g~~ 250 (434)
+-.|+-..+....++|.....-+.|..-|||..-+. .... -|.-+|-+...+..| .....++..|.+.|++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~l 161 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT--DTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNL 161 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe--cCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccE
Confidence 344555555566777776677788999999876652 2211 455566655444444 3566789999999998
Q ss_pred EEEEecCC------CCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 251 LCLAGFGN------LPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 251 l~~~~~~~------~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
-.++..|- ..+.|++|+.- ++....-++-.|||..-++.-.
T Consensus 162 WFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 162 WFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred EEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEecc
Confidence 88875331 13455555543 2234445667788776655433
No 460
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=57.09 E-value=55 Score=22.04 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.4
Q ss_pred eeEEEECCCCCeEEEEecC
Q 013884 239 YNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~ 257 (434)
...++.-|||++|+.+.+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVD 21 (55)
T ss_pred eEEEEECCCCcEEEEEEee
Confidence 4678889999999988654
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=2.3e+02 Score=28.29 Aligned_cols=158 Identities=6% Similarity=0.025 Sum_probs=80.1
Q ss_pred eeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 55 IRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 55 ~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
+-|...++.+.+...+.+.=|.+..++......+. -..|.++.||+| +..+|+-- ....|.+++.......
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR-----~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQR-----TSKTVDFCNFIPDNSQ 101 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEe-----cCceEEEEecCCCchh
Confidence 34544455555444455555555443322222222 236999999999 67777643 2346777765321101
Q ss_pred Ccee-eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884 132 QPLA-RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 132 ~~i~-~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~ 210 (434)
.... ........+..+.|+.. +.++++..+.. .+|.+..... ..+.--.+...|+-..|.|+-+..
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~-----------e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQGI-----------EFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEecCCe-----------EEEEEchhhh-hhhhhhhcccCccEEEEccccceE
Confidence 1111 11112334678899877 55666543321 2333322221 111111235678889999998877
Q ss_pred EEEEccCCCeEEEEeccceeE
Q 013884 211 AVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~~~~ 231 (434)
.++++-....+.=|.++...+
T Consensus 169 LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred eeeccccccccccEEEeecee
Confidence 776664444443344443333
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.64 E-value=2.1e+02 Score=29.06 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=21.5
Q ss_pred eeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCEE
Q 013884 239 YNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 239 ~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
+..++|+|+. ..|.+-..+| .|++||...-..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdn---viRiy~lS~~te 202 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDN---VIRIYSLSEPTE 202 (741)
T ss_pred eeeccccCCccCCceEEEEecCc---EEEEEecCCcch
Confidence 4567899976 3555555444 899999876433
No 463
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=54.40 E-value=2.2e+02 Score=27.97 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred eEEEEeccceeEEEc--CCc-----CeeEEEECCCCCeEEEEecCCCC------CeEEEEEccCCEEEEEe-eC--CC--
Q 013884 220 SATIFNKKCRPILEL--GSG-----PYNTVRWNPKGKFLCLAGFGNLP------GDMAFWDYVDGKQLGTT-RA--EC-- 281 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~--~~~-----~~~~i~~sP~g~~l~~~~~~~~~------g~i~iwd~~~~~~i~~~-~~--~~-- 281 (434)
.+.+||+..+.-..+ ..+ ...-++|- -++|+.|||.... .+|++||+++.+-...- .+ +.
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR 232 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR 232 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence 466777765443333 222 12335553 3577788875432 35778888887533221 22 21
Q ss_pred -ceEEEECCCCCEEEEEEcC
Q 013884 282 -SVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 282 -~~~~~wspdg~~l~tas~~ 300 (434)
-.++.-+|+|..++.++.+
T Consensus 233 SGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CcceEEecCCCcEEEEcchh
Confidence 1236667888888888763
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=54.19 E-value=51 Score=29.22 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884 249 KFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
..|.++..+ ..|++||+. ..+.+..+..- .+..+..+.-|.||+|--.
T Consensus 29 d~Lfva~~g---~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASG---CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCC---CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 455554434 489999987 33566666553 5566999999999999765
No 465
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=53.48 E-value=3.7 Score=22.14 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=7.2
Q ss_pred EecCCCcEE
Q 013884 6 TCLRVGLII 14 (434)
Q Consensus 6 ~fSP~g~~L 14 (434)
.|||+|+.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 599999864
No 466
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=53.38 E-value=2.6e+02 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
++|++.+.|....|++.+. ....|...|.++++....+..+
T Consensus 272 H~Nsi~yd~~dd~iivSsR--~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSR--HQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp -EEEEEEETTTTEEEEEET--TT-EEEEEE-TTS-EEEEES-S
T ss_pred ccCccEEeCCCCeEEEEcC--cceEEEEEECCCCcEEEEeCCC
Confidence 5799999995555555443 2358889998888887776554
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.74 E-value=1.8e+02 Score=26.43 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=62.2
Q ss_pred eEEEEECcCCCEEEEEEccCCC--eEEEEeccc----eeEEEcC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC----RPILELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~----~~~~~~~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
+..-++-|||+.+.+ .|..++ .+++|+--. ....+.. ..---++.-=|||+.|++||..+ .+.++|
T Consensus 69 CSgg~~L~dG~ll~t-GG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~--~t~E~~ 145 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQT-GGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN--PTYEFW 145 (243)
T ss_pred ccCcCCCCCCCEEEe-CCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC--Cccccc
Confidence 334456789977764 455444 677886422 1111111 11123455568999999999764 567888
Q ss_pred EccC--CEEEE--Eee-----CCCce--EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 267 DYVD--GKQLG--TTR-----AECSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 267 d~~~--~~~i~--~~~-----~~~~~--~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.... ..... .+. ...-. .+...|||+.|+.+.. .-.|||+....
T Consensus 146 P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------~s~i~d~~~n~ 200 (243)
T PF07250_consen 146 PPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------GSIIYDYKTNT 200 (243)
T ss_pred CCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------CcEEEeCCCCe
Confidence 7532 11111 111 11111 2667899999988754 45677887663
No 468
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=3.6e+02 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
++++.+++...+....-+..+......+.....|||.++++.+.+
T Consensus 72 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~d~~~~~~~~~ 116 (755)
T KOG2100|consen 72 DGNIVVSNALYGLSSVPLTNSTFGRLRYSSDLISPDRKYILLGRN 116 (755)
T ss_pred CCceEeecccCcccEEEecccchhhccccccccChhhhhheeccC
Confidence 567777777666432222221111122222355677777766543
No 469
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=48.33 E-value=3.1e+02 Score=27.81 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=59.1
Q ss_pred EccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEec---------------CCCCCeEEEEEccCCEEEEEe
Q 013884 214 YGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGF---------------GNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 214 ~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~---------------~~~~g~i~iwd~~~~~~i~~~ 277 (434)
.+..++.+.-+|.+ ++.+-+.... ...+..+| ..+.++.. ...+|.|.-.|+.+++.+...
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK 382 (488)
T ss_pred EECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence 46678889889985 4554443211 12244555 33333221 113578999999999888776
Q ss_pred eCCCce----------EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884 278 RAECSV----------TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 278 ~~~~~~----------~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
...... .-.-.-.+..|++++. |+.++.+|. +|+++-+.+
T Consensus 383 ~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~------dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 383 REGTIRDSWNIGFPHWGGSLATAGNLVFAGAA------DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eCCccccccccCCcccCcceEecCCeEEEECC------CCeEEEEECCCCceeeEEE
Confidence 543100 0001124567777777 898988887 677665543
No 470
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=47.94 E-value=2.4e+02 Score=26.51 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEE--eccceeEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~--d~~~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
...+.++... ++++++ |+.-..+.++ +.....+..+ ....+.++.|-++++.++++. ..|++.++..
T Consensus 129 ~~~i~sl~~~--~~~I~v--gD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~ 201 (321)
T PF03178_consen 129 PFYITSLSVF--KNYILV--GDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRY 201 (321)
T ss_dssp SSSEEEEEEE--TTEEEE--EESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE
T ss_pred eEEEEEEecc--ccEEEE--EEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEE
Confidence 3455555554 555664 6655666665 5444433332 455577888887777776666 5689999876
Q ss_pred c
Q 013884 269 V 269 (434)
Q Consensus 269 ~ 269 (434)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 5
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=47.61 E-value=67 Score=29.23 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred eEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC----CEEE---EEeeC-CCceEEEEC
Q 013884 220 SATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----GKQL---GTTRA-ECSVTSEWS 288 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~----~~~i---~~~~~-~~~~~~~ws 288 (434)
...+||+..+.+..+. .-....-.+-|||++|.+||.......+++++..+ ..-. ..+.. .+--...--
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 3445565544444332 12222335779999999998644334588887544 1111 11111 122235567
Q ss_pred CCCCEEEEEEc
Q 013884 289 PDGRYFMTATT 299 (434)
Q Consensus 289 pdg~~l~tas~ 299 (434)
|||+.|+.++.
T Consensus 127 ~DG~vlIvGG~ 137 (243)
T PF07250_consen 127 PDGRVLIVGGS 137 (243)
T ss_pred CCCCEEEEeCc
Confidence 79999999987
No 472
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=47.04 E-value=2.9e+02 Score=30.75 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=39.8
Q ss_pred EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE----EEECCCCCEEEEEEc
Q 013884 231 ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT----SEWSPDGRYFMTATT 299 (434)
Q Consensus 231 ~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~----~~wspdg~~l~tas~ 299 (434)
++.+...+.+...+.| ||++-+ + .-|+|||+++++++....++.+-. ..|.-+|..++.+..
T Consensus 948 ~~~w~g~p~~~a~~~~---yiia~~-~---~fIeI~~~~t~eli~~i~~~~Ir~~~~~~~~l~~~~~~~~~~~ 1013 (1029)
T KOG4305|consen 948 IFLWEGEPQEFALSYP---YIIAFG-D---NFIEIRDLETGELIQIILGQNIRLLTSGLGPLLHGGKIIYYCY 1013 (1029)
T ss_pred EEEEcCccceeeeecc---eEEEec-C---ceEEEEecccceeeEEeeccceeEeecCcccccCCCeEEEEEe
Confidence 4444566666666666 554433 2 379999999999999888875432 566665555444443
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.55 E-value=4.9e+02 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=32.5
Q ss_pred CeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+.+-+|+.........+.. ....++++|..+++..+ ||.+..||++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~h~------Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 219 GLVVIKDRASKYVQSAYLP---NGQLESRDGSHFVSYHT------DGSYAFWDVSSG 266 (993)
T ss_pred eeeeehhcccccchhhccc---ccccCccCCceEEEEEe------cCCEEeeecCCC
Confidence 4677776554433222221 11233999999999999 999999999775
No 474
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=45.32 E-value=31 Score=36.99 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=39.5
Q ss_pred CCeEEEEECc---CCCEEEEEEccCCCeEEEEeccc--eeEEEcCCc-----------CeeEEEECCCCCeEEEEecCCC
Q 013884 196 GPVHDVQWSY---SGSEFAVVYGFMPASATIFNKKC--RPILELGSG-----------PYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 196 ~~i~~~~wsp---dg~~~av~~g~~~~~i~l~d~~~--~~~~~~~~~-----------~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
.++.-+.|.| +. ..++++..++.+++.+... ..++.-|.. .+.--..||||+.++.+. .
T Consensus 181 s~~~~V~wcp~~~~~--~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~---~ 255 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNK--VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI---S 255 (1283)
T ss_pred CCcceeeeccccccc--ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee---c
Confidence 3456677776 33 4445788888888765431 111111222 222234899999999988 4
Q ss_pred CCeEEEEEc
Q 013884 260 PGDMAFWDY 268 (434)
Q Consensus 260 ~g~i~iwd~ 268 (434)
+|.+.+|..
T Consensus 256 dG~v~f~Qi 264 (1283)
T KOG1916|consen 256 DGSVGFYQI 264 (1283)
T ss_pred CCccceeee
Confidence 456666653
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=44.89 E-value=58 Score=18.52 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=17.7
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
.++++. .+|.+..+|.++++.+..+
T Consensus 8 ~v~~~~---~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGS---TDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEc---CCCEEEEEEcccCcEEEEc
Confidence 455555 4579999999888776543
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=44.38 E-value=2.9e+02 Score=26.29 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=65.1
Q ss_pred EEEEECcCCCEEEEEEccCC------CeEEEEeccceeEEEc-----------------CCcCeeEEEECCCCCeEEEEe
Q 013884 199 HDVQWSYSGSEFAVVYGFMP------ASATIFNKKCRPILEL-----------------GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 199 ~~~~wspdg~~~av~~g~~~------~~i~l~d~~~~~~~~~-----------------~~~~~~~i~~sP~g~~l~~~~ 255 (434)
.++++.++|..++ +.... ..|..|+..+..+..+ .......++++|+|+.|.++.
T Consensus 88 Egi~~~~~g~~~i--s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWI--SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEE--EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3688867776665 33334 5888888765543332 123456799999999655543
Q ss_pred cCCC--CC-----------eEEEEEccC-C----EEEEEee-------CCCceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 256 FGNL--PG-----------DMAFWDYVD-G----KQLGTTR-------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 256 ~~~~--~g-----------~i~iwd~~~-~----~~i~~~~-------~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
-..+ ++ .|..||..+ + +....+. ...++.+.+-+|+++|+.=-.+-. ...+.++
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~-~~~~~~r 244 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP-GTGNYKR 244 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC-CccceEE
Confidence 2211 11 244456554 2 2233333 346677999999997776443111 0255667
Q ss_pred EEeec
Q 013884 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
|+.++
T Consensus 245 i~~v~ 249 (326)
T PF13449_consen 245 IYRVD 249 (326)
T ss_pred EEEEE
Confidence 76664
No 477
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=40.69 E-value=98 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.9
Q ss_pred CceEEEECCCCCEEEEEEc
Q 013884 281 CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~ 299 (434)
.++-+.|+|||+.|.+.-.
T Consensus 503 E~tG~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 503 EITGPCFSPDGRTLFVNIQ 521 (524)
T ss_pred ccccceECCCCCEEEEEEe
Confidence 4455899999999887654
No 478
>PRK13615 lipoprotein LpqB; Provisional
Probab=39.85 E-value=4.5e+02 Score=27.27 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.5
Q ss_pred CCCeEEEEECcCCCEEEEEEcc-CCCeEEEEec---cc--eeE----EEc--CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGF-MPASATIFNK---KC--RPI----LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~-~~~~i~l~d~---~~--~~~----~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
.+.|..+..|+||-+++++... ..++|.+--+ .+ ..+ ..+ ..+.+.++.|..++.+++++.....+..
T Consensus 416 ~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~ 495 (557)
T PRK13615 416 TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGERQ 495 (557)
T ss_pred CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCce
Confidence 5789999999999999998643 2235554321 12 122 122 2447889999999998887742223346
Q ss_pred EEEEEcc
Q 013884 263 MAFWDYV 269 (434)
Q Consensus 263 i~iwd~~ 269 (434)
+++..+.
T Consensus 496 v~~v~v~ 502 (557)
T PRK13615 496 VELHQVG 502 (557)
T ss_pred EEEEECC
Confidence 7777665
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.21 E-value=71 Score=17.81 Aligned_cols=15 Identities=13% Similarity=-0.208 Sum_probs=10.9
Q ss_pred ceEEecCCCcEEEEE
Q 013884 3 LLLTCLRVGLIIQTF 17 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~ 17 (434)
..|+++++|+.+++=
T Consensus 5 ~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 5 HGVAVDSDGNIYVAD 19 (28)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred cEEEEeCCCCEEEEE
Confidence 467778888877763
No 480
>PRK13614 lipoprotein LpqB; Provisional
Probab=37.87 E-value=4.9e+02 Score=27.12 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~ 78 (434)
+.+++.|++|..++... .|+ -.+|-...|.....+... .....+.|.++| .+=+..+ + .|..+...
T Consensus 345 ~~s~avS~~g~~~A~~~-----~~~-~~l~~~~~g~~~~~~~~g----~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~ 413 (573)
T PRK13614 345 PASPAESPVSQTVAFLN-----GSR-TTLYTVSPGQPARALTSG----STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPT 413 (573)
T ss_pred ccceeecCCCceEEEec-----CCC-cEEEEecCCCcceeeecC----CCccCCcccCCC-CEEEeeCCCCceEEEEecC
Confidence 45678899999988765 344 244433334433332222 234467888877 4433322 2 45554432
Q ss_pred CC-CC--ceeee-----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeE
Q 013884 79 DF-PK--GILYR-----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQ 146 (434)
Q Consensus 79 ~~-~~--~~~~~-----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~ 146 (434)
.- .. ..... +.-..|..+.+|++ +-.+++.+... ...+|.|--+.....+.+..... .......+
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrD-G~R~Avi~~~~--g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~s 490 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSRE-GVRALVISEQN--GKSRVQVAGIVRNEDGTPRELTAPITLAADSDADT 490 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCC-ccEEEEEEEeC--CccEEEEEEEEeCCCCCeEEccCceecccCCCcce
Confidence 11 10 00001 11224999999999 45555554321 12235544433211122221111 11246788
Q ss_pred EEECCCCCeEEEEE
Q 013884 147 LNWNRGSTGLLAVA 160 (434)
Q Consensus 147 ~~ws~~G~~l~~~~ 160 (434)
+.|..+++ |++++
T Consensus 491 l~W~~~~s-l~V~~ 503 (573)
T PRK13614 491 GAWVGDST-VVVTK 503 (573)
T ss_pred eEEcCCCE-EEEEe
Confidence 99999887 44544
No 481
>PRK13613 lipoprotein LpqB; Provisional
Probab=37.58 E-value=5.1e+02 Score=27.20 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=88.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecCCCcEEEEe-c--CC--eE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSSDEAVACRM-A--TN--EI 72 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~--~~--~i 72 (434)
+.+++.|++|..++.... ....+.+..+..+.. ....... .....+.|..+|- +=+. . ++ .+
T Consensus 365 ~~s~avS~~g~~~A~v~~----~~~~l~vg~~~~~~~~~~~~~~~~~~----~~Lt~PS~d~~g~-vWtvd~~~~~~~vl 435 (599)
T PRK13613 365 LRRVAVSRDESRAAGISA----DGDSVYVGSLTPGASIGVHSWGVTAD----GRLTSPSWDGRGD-LWVVDRDPADPRLL 435 (599)
T ss_pred ccceEEcCCCceEEEEcC----CCcEEEEeccCCCCccccccceeecc----CcccCCcCcCCCC-EEEecCCCCCceEE
Confidence 356788999998887651 224666665433322 1111111 2344667777663 2222 1 11 25
Q ss_pred EEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-cee---eeeecccceeE
Q 013884 73 QFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLA---RRSFFRCSTVQ 146 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~---~~~~~~~~~~~ 146 (434)
++... ......+....+. .|..+.+|++ +-.+++.+.. +..++|.|--+.....+. .+. .....-.+...
T Consensus 436 ~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrD-G~RvAvv~~~--~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~ 511 (599)
T PRK13613 436 WLLQG-DGEPVEVRTPELDGHRVVAVRVARD-GVRVALIVEK--DGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTD 511 (599)
T ss_pred EEEcC-CCcEEEeeccccCCCEeEEEEECCC-ccEEEEEEec--CCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccce
Confidence 55543 2111111111222 4999999999 5556555432 222344444332211011 111 11112235789
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~ 208 (434)
+.|..+++ |+++..... +...++++.++|.......+..-.++..++-..+.+
T Consensus 512 ~~W~~~~s-L~Vlg~~~~--------~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~ 564 (599)
T PRK13613 512 MSWAGDSQ-LVVLGREEG--------GVQQARYVQVDGSTPPASAPAAVTGVESITASEDER 564 (599)
T ss_pred eEEcCCCE-EEEEeccCC--------CCcceEEEecCCcCcccccccCCCCeeEEEecCCCC
Confidence 99999877 444432211 234578888888654322222234455555554444
No 482
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.02 E-value=33 Score=28.39 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=13.8
Q ss_pred CccChhhhhhcchhhHHHHH
Q 013884 405 PEMSKNALRNKKKREKQKEK 424 (434)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~ 424 (434)
.-+||++++|-||.++..+.
T Consensus 88 pglsktakRnlKkeek~qaq 107 (212)
T KOG4325|consen 88 PGLSKTAKRNLKKEEKLQAQ 107 (212)
T ss_pred ccchhHHHhhhhHHHHHHHH
Confidence 34789998877766665444
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.97 E-value=1.5e+02 Score=29.50 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCeEEEEEccCCEE-EEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 260 PGDMAFWDYVDGKQ-LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 260 ~g~i~iwd~~~~~~-i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.|++.++.....+. +...-...+..+++||.+.++++-. .++++++.++.+
T Consensus 337 ~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-------~gki~~~~l~Nr 388 (733)
T COG4590 337 NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-------QGKIRLAQLENR 388 (733)
T ss_pred CCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-------CCceEEEEecCC
Confidence 35666654333322 2222222455689999999998754 578888887654
No 484
>PF14939 DCAF15_WD40: DDB1-and CUL4-substrate receptor 15, WD repeat
Probab=36.85 E-value=99 Score=27.26 Aligned_cols=39 Identities=10% Similarity=0.371 Sum_probs=25.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCC--------cEEEEEcCCCcEEEEE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEK--------NVILWKTETGEAVYQL 42 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~--------~v~iWd~~~g~~~~~~ 42 (434)
.|-||.+|+||++.......+|. .+..|...-+..++.+
T Consensus 35 flGft~cGq~lLSYt~~~~~~~~~~~~~ykY~L~wW~F~p~~~l~~v 81 (211)
T PF14939_consen 35 FLGFTKCGQFLLSYTSSCDDDDSLFFSNYKYHLYWWNFNPHQKLRKV 81 (211)
T ss_pred EEeecccCCEEEEEEeccCcccccccccceEEEEEEEecCCCeEEEE
Confidence 47899999999998743332222 4677776666555443
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.23 E-value=3.9e+02 Score=24.91 Aligned_cols=97 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred EEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEec--CC-CCCeEEEEEccCCEEEEEee-------CCCceEEEE
Q 013884 221 ATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGF--GN-LPGDMAFWDYVDGKQLGTTR-------AECSVTSEW 287 (434)
Q Consensus 221 i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~--~~-~~g~i~iwd~~~~~~i~~~~-------~~~~~~~~w 287 (434)
+.+||....+-..++ .+.|+++.|.-+.++++.|.+ .+ ....+..||.++..-...-. ++-.....-
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEee
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecCceeee
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~ 321 (434)
.-|+..+..++.. .++.-.|..++|.....
T Consensus 98 ~~d~~~~~~aG~~----~~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 98 SNDGSNFWVAGRS----ANGSTFLMKYDGSSWSS 127 (281)
T ss_pred ccCCceEEEecee----cCCCceEEEEcCCceEe
No 486
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=33.34 E-value=57 Score=29.72 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=32.7
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEE
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK 333 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~ 333 (434)
+-.|+-..+++... ..++++||++|+.++..+...+.+|.-|
T Consensus 62 ~t~P~kS~vItt~K------k~Gl~VYDLsGkqLqs~~~Gk~NNVDLr 103 (364)
T COG4247 62 ATNPDKSLVITTVK------KAGLRVYDLSGKQLQSVNPGKYNNVDLR 103 (364)
T ss_pred cCCcCcceEEEeec------cCCeEEEecCCCeeeecCCCcccccccc
Confidence 44677777787777 8899999999999998877766655544
No 487
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=32.86 E-value=23 Score=37.88 Aligned_cols=68 Identities=19% Similarity=0.438 Sum_probs=41.8
Q ss_pred eEEEECC---CCCeEEEEecCCCCCeEEEEEccC--CEEEEEeeCCCce-----------EEEECCCCCEEEEEEcCCce
Q 013884 240 NTVRWNP---KGKFLCLAGFGNLPGDMAFWDYVD--GKQLGTTRAECSV-----------TSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 240 ~~i~~sP---~g~~l~~~~~~~~~g~i~iwd~~~--~~~i~~~~~~~~~-----------~~~wspdg~~l~tas~~~rl 303 (434)
.-+.|.| +.-+++.+- .+|+|.+.+.+. ...+.. ....++ .-..||||..|+++..
T Consensus 184 ~~V~wcp~~~~~~~ic~~~---~~~~i~lL~~~ra~~~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---- 255 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGL---KGGEIRLLNINRALRSLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---- 255 (1283)
T ss_pred ceeeecccccccceeeecc---CCCceeEeeechHHHHHHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEEeec----
Confidence 4455555 455777665 345777655432 222222 111222 1358999999999999
Q ss_pred eeCCcEEEEee--cCc
Q 013884 304 QIDNGIKIFHH--NGS 317 (434)
Q Consensus 304 ~~D~~i~iw~~--~g~ 317 (434)
||.++.|.+ +|+
T Consensus 256 --dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 256 --DGSVGFYQIYITGK 269 (1283)
T ss_pred --CCccceeeeeeecc
Confidence 999999986 554
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=32.34 E-value=1e+02 Score=31.77 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=26.0
Q ss_pred CeeEEEECC----CCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 238 PYNTVRWNP----KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 238 ~~~~i~~sP----~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
....+..++ +..+|++.. .|+++++||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~---~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS---RDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE---TTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEe---CCCeEEEEECCCCeEEEEe
Confidence 345566666 566887777 5579999999999886654
No 489
>PF02095 Extensin_1: Extensin-like protein repeat; InterPro: IPR003883 Extensins are plant cell-wall proteins; they can account for up to 20% of the dry weight of the cell wall. They are highly-glycosylated, possibly reflecting their interactions with cell-wall carbohydrates. Amongst their functions is cell wall strengthening in response to mechanical stress (e.g., during attack by pests, plant-bending in the wind, etc.). This repeat occurs within extensin-like proteins.; GO: 0005199 structural constituent of cell wall
Probab=32.22 E-value=25 Score=14.84 Aligned_cols=6 Identities=50% Similarity=1.447 Sum_probs=3.9
Q ss_pred CccCCC
Q 013884 381 AAYRPP 386 (434)
Q Consensus 381 ~~y~pp 386 (434)
..|.||
T Consensus 2 P~ykPp 7 (10)
T PF02095_consen 2 PVYKPP 7 (10)
T ss_pred CccCCC
Confidence 467776
No 490
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=32.21 E-value=1.5e+02 Score=30.46 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=14.2
Q ss_pred CCCCeeeecCCCcEEEEe
Q 013884 50 TTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~ 67 (434)
..+..+.|+||++.|...
T Consensus 502 aE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVN 519 (524)
T ss_pred cccccceECCCCCEEEEE
Confidence 667789999999977654
No 491
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.99 E-value=54 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=15.3
Q ss_pred CCCCCeEEEEecCCC---CCeEEEEEccCCE
Q 013884 245 NPKGKFLCLAGFGNL---PGDMAFWDYVDGK 272 (434)
Q Consensus 245 sP~g~~l~~~~~~~~---~g~i~iwd~~~~~ 272 (434)
.+++++++.||.+.. -.++.+||+++.+
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 356777777776431 2478899988874
No 492
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=30.91 E-value=5.1e+02 Score=25.23 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEec--cceeEEEc----CC---cCeeEEEECCCCC--------------eEE
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL----GS---GPYNTVRWNPKGK--------------FLC 252 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~~~~~~~~----~~---~~~~~i~~sP~g~--------------~l~ 252 (434)
|.-..++|...|..|.|+-+ -.-+|.+ .++....+ .. .-.|.+...|+|. +++
T Consensus 115 GRPLGl~f~~~ggdL~VaDA----YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA----YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF 190 (376)
T ss_pred CCcceEEeccCCCeEEEEec----ceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence 55567999998877777533 3334322 22221111 00 1123344444333 222
Q ss_pred EEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEc
Q 013884 253 LAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~ 299 (434)
..-.+...|.+.-||..+.+.-...+. .....++.|||+.+++++-+
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAET 238 (376)
T ss_pred eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEee
Confidence 222233568888888777643222222 24445899999999999876
No 493
>PHA03098 kelch-like protein; Provisional
Probab=30.45 E-value=3.3e+02 Score=27.80 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=28.3
Q ss_pred eEEEEeccceeEEEcCC---cCeeEEEECCCCCeEEEEecCCCC-----CeEEEEEccCCE
Q 013884 220 SATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLP-----GDMAFWDYVDGK 272 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~~~---~~~~~i~~sP~g~~l~~~~~~~~~-----g~i~iwd~~~~~ 272 (434)
.+..||...+.-..... ......+..-+++++++||....+ ..+++||..+.+
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 57888886544333321 111112223456777777754221 248899987653
No 494
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=30.04 E-value=1.3e+02 Score=17.98 Aligned_cols=32 Identities=6% Similarity=-0.147 Sum_probs=23.8
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+..++|+|.++.|..+... .+.|...+++|.
T Consensus 10 ~~~~la~d~~~~~lYw~D~~-----~~~I~~~~~~g~ 41 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWG-----LDVIEVANLDGT 41 (43)
T ss_pred CcCEEEEeecCCEEEEEeCC-----CCEEEEEeCCCC
Confidence 44558999999988877663 467777777764
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=29.96 E-value=7.5e+02 Score=26.86 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=84.2
Q ss_pred CCCCeeeec-------CCCcEEEEecCCeEEEEe------CCCCCC-------ceeeeeec-----CCeeEEEEeCCCCC
Q 013884 50 TTWPSIRFS-------SDEAVACRMATNEIQFFD------TTDFPK-------GILYRLRV-----PGVAAFEVSKAPGS 104 (434)
Q Consensus 50 ~~~~~~~~S-------~d~~~la~~~~~~i~v~~------~~~~~~-------~~~~~~~~-----~~v~~~~~sp~~~~ 104 (434)
..+..|.|+ ...++|+.-....+.|+. ...... .....+.. ....+++|.|....
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Confidence 344455565 223577777778888888 211110 11112221 14678899998666
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCCC-CC-ceee-----eee-cccce----eEEEECCCCCeEEEEEEecccccCceee
Q 013884 105 HVAVFVPESKGSPASVQIYACGKDLQ-SQ-PLAR-----RSF-FRCST----VQLNWNRGSTGLLAVAQSDVDKTNQSYY 172 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~~-~~-~i~~-----~~~-~~~~~----~~~~ws~~G~~l~~~~~~~~d~~~~~~~ 172 (434)
.+|+. ...|...||++..... .. .+.. -+. +.... ..+.|..+-..|+++..
T Consensus 160 q~AiV-----D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r----------- 223 (765)
T PF10214_consen 160 QFAIV-----DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR----------- 223 (765)
T ss_pred eEEEE-----eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-----------
Confidence 67664 2346889999932110 11 1100 001 11112 36789888888877532
Q ss_pred cceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc
Q 013884 173 GESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 173 g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~ 228 (434)
..|..+++.+.... .+.......|.++.=+|+.. ++++++. ..|.++|++.
T Consensus 224 --~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 224 --SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred --CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 23555555554332 22223356899999998732 3334343 3677777754
No 496
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=28.85 E-value=73 Score=21.50 Aligned_cols=13 Identities=15% Similarity=-0.159 Sum_probs=6.9
Q ss_pred EecCCCcEEEEEe
Q 013884 6 TCLRVGLIIQTFQ 18 (434)
Q Consensus 6 ~fSP~g~~L~t~~ 18 (434)
-.++||+||+.+.
T Consensus 37 Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 37 YVDEDGRYLIQGQ 49 (57)
T ss_dssp EEETTSSEEEES-
T ss_pred EEcCCCCEEEEeE
Confidence 3466666666533
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.38 E-value=8.5e+02 Score=27.96 Aligned_cols=70 Identities=17% Similarity=0.348 Sum_probs=41.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEE-E-Ee-------ccceeE--------------EEc---CCcCeeEEEECCCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASAT-I-FN-------KKCRPI--------------LEL---GSGPYNTVRWNPKG 248 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~-l-~d-------~~~~~~--------------~~~---~~~~~~~i~~sP~g 248 (434)
.-.|.++...-+|+.|. +|. ++.++ + |. .+|..+ .++ +..++..|.....-
T Consensus 178 g~~V~~I~~t~nGRIF~--~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFF--AGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEE--eec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 44678888888898888 455 44332 1 11 112211 112 25577777776555
Q ss_pred CeEEEEecCCCCCeEEEEEccC
Q 013884 249 KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
..+.+-+ ..|+|.+||+..
T Consensus 255 ~IlY~ls---ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLS---EKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeec---cCceEEEEEccC
Confidence 5555554 568999999874
No 498
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.55 E-value=2.1e+02 Score=28.14 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=32.5
Q ss_pred eeEEEECCCCCeEEEEecC-------C---CCCeEEEEEcc---------CCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884 239 YNTVRWNPKGKFLCLAGFG-------N---LPGDMAFWDYV---------DGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~-------~---~~g~i~iwd~~---------~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
-..|.|+|||+++++.|.. + ..|+|.=.+.. ....+..+-+.+...++|+|....|.+.-.
T Consensus 179 g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~ 258 (399)
T COG2133 179 GGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEH 258 (399)
T ss_pred cccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEec
Confidence 3569999999877776644 1 12322211111 112344444446666888888444444443
No 499
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=27.19 E-value=1.1e+03 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=19.7
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
...+.++.+|+.++++. +++.. +.....+.++.++.
T Consensus 434 ~~~v~~l~sfSv~~~g~--vA~L~---~~d~q~~qL~~m~~ 469 (1774)
T PF11725_consen 434 EAEVDKLKSFSVAPDGT--VAMLT---GKDGQTLQLHDMSP 469 (1774)
T ss_pred hhhhhhcccccccCCCc--eeeee---cCCCcceeeeccCc
Confidence 34456788898888742 22221 11123457777655
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=27.08 E-value=1.5e+02 Score=17.79 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=18.4
Q ss_pred CCCeEEEEEccCCEEEEEeeCC
Q 013884 259 LPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
.+|.|+-.|.++|+.+..++..
T Consensus 8 ~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTSEEEEEETTTTSEEEEEESS
T ss_pred CCCEEEEEECCCCCEEEeeeCC
Confidence 5689999999999998887654
Done!